Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
CYP2E1	1571	hgsc.bcm.edu	36	10	135200665	135200665	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_000773	exon7	c.G1076A	p.R359Q	.	.	.
CHAT	1103	hgsc.bcm.edu	36	10	50524621	50524621	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_001142929	exon8	c.G822A	p.A274A	.	.	.
KIAA1279	26128	hgsc.bcm.edu	36	10	70435532	70435532	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_015634	exon4	c.C644T	p.A215V	.	.	.
KIF20B	9585	hgsc.bcm.edu	36	10	91501148	91501148	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_016195	exon24	c.C4042G	p.Q1348E	.	.	.
HTR3A	3359	hgsc.bcm.edu	36	11	113365588	113365588	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_000869	exon9	c.C1348T	p.R450C	.	.	.
MLL	4297	hgsc.bcm.edu	36	11	117877041	117877041	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_005933	exon25	c.G6279T	p.R2093S	.	.	.
ILK	3611	hgsc.bcm.edu	36	11	6587156	6587156	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_004517	exon8	c.G669A	p.K223K	.	.	.
INPPL1	3636	hgsc.bcm.edu	36	11	71619815	71619815	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_001567	exon12	c.C1431T	p.G477G	.	.	.
IPO7	10527	hgsc.bcm.edu	36	11	9413060	9413060	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_006391	exon19	c.T2078C	p.M693T	.	.	.
KRAS	3845	hgsc.bcm.edu	36	12	25269914	25269914	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_004985	exon4	c.A351C	p.K117N	 KRAS,large_intestine,NS,Substitution - Missense,0 	.	.
CLEC4D	338339	hgsc.bcm.edu	36	12	8564179	8564179	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_080387	exon5	c.C475A	p.Q159K	.	.	.
PARP4	143	hgsc.bcm.edu	36	13	23927207	23927207	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_006437	exon22	c.G2706A	p.A902A	.	.	.
POLR1D	51082	hgsc.bcm.edu	36	13	27138029	27138029	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_152705	exon3	c.A308G	p.Y103C	.	.	.
POSTN	10631	hgsc.bcm.edu	36	13	37052705	37052705	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_001135934	exon11	c.C1522T	p.R508C	.	.	.
SALL2	6297	hgsc.bcm.edu	36	14	21062476	21062476	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_005407	exon2	c.G1226A	p.R409H	.	.	.
DUOX2	50506	hgsc.bcm.edu	36	15	43176847	43176847	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_014080	exon29	c.T3728G	p.L1243R	.	.	.
GABPB1	2553	hgsc.bcm.edu	36	15	48358264	48358264	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_005254	exon9	c.G1045T	p.A349S	.	.	.
ABHD2	11057	hgsc.bcm.edu	36	15	87539526	87539526	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_152924	exon11	c.C1146A	p.G382G	.	.	.
IL4R	3566	hgsc.bcm.edu	36	16	27274697	27274697	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_000418	exon8	c.C738T	p.A246A	.	.	.
ADAMTS18	170692	hgsc.bcm.edu	36	16	75947429	75947429	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_199355	exon9	c.G1369T	p.E457X	.	.	.
KRT37	8688	hgsc.bcm.edu	36	17	36833948	36833948	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_003770	exon1	c.C354T	p.Y118Y	.	.	.
CDC27	996	hgsc.bcm.edu	36	17	42589628	42589628	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_001114091	exon6	c.G597A	p.E199E	.	.	.
ABCA10	10349	hgsc.bcm.edu	36	17	64689925	64689925	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_080282	exon23	c.G2733A	p.T911T	.	.	.
TP53	7157	hgsc.bcm.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	C	T	rs28934578	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_001126114	exon5	c.G524A	p.R175H	 TP53,lung,NS,Substitution - Missense,0 	.	.
ADAM11	4185	hgsc.bcm.edu	36	17	40210083	40210083	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_002390	exon21	c.G1705A	p.E569K	.	.	.
MBD3	53615	hgsc.bcm.edu	36	19	1532173	1532173	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_003926	exon5	c.G595A	p.A199T	.	.	.
ZNF536	9745	hgsc.bcm.edu	36	19	35731646	35731646	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_014717	exon4	c.G3280A	p.G1094S	.	.	.
PNMAL1	55228	hgsc.bcm.edu	36	19	51666062	51666062	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_018215	exon2	c.C71T	p.S24F	.	.	.
SLC17A7	57030	hgsc.bcm.edu	36	19	54628862	54628862	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_020309	exon7	c.C800T	p.S267L	.	.	.
NLRP7	199713	hgsc.bcm.edu	36	19	60143394	60143394	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_139176	exon4	c.C605T	p.P202L	.	.	.
VAV1	7409	hgsc.bcm.edu	36	19	6780915	6780915	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_005428	exon14	c.C1384T	p.R462X	.	.	.
SPAG17	200162	hgsc.bcm.edu	36	1	118338587	118338587	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_206996	exon35	c.C5143T	p.R1715W	.	.	.
TNN	63923	hgsc.bcm.edu	36	1	173364445	173364445	+	Silent	SNP	C	C	T	rs61740198	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_022093	exon15	c.C3270T	p.G1090G	.	.	.
PABPC4	8761	hgsc.bcm.edu	36	1	39807105	39807105	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_001135653	exon6	c.C832T	p.R278W	.	.	.
GPBP1L1	60313	hgsc.bcm.edu	36	1	45893550	45893550	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_021639	exon5	c.G89C	p.G30A	.	.	.
TAS1R1	80835	hgsc.bcm.edu	36	1	6559163	6559163	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_177540	exon3	c.G600T	p.W200C	.	.	.
DDX27	55661	hgsc.bcm.edu	36	20	47293603	47293603	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_017895	exon20	c.C2328A	p.G776G	.	.	.
EP300	2033	hgsc.bcm.edu	36	22	39853675	39853675	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_001429	exon4	c.G1145A	p.C382Y	.	.	.
ACSL3	2181	hgsc.bcm.edu	36	2	223514494	223514494	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_004457	exon17	c.C2041T	p.R681C	.	.	.
HTR2B	3357	hgsc.bcm.edu	36	2	231682229	231682229	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_000867	exon4	c.C692A	p.A231E	.	.	.
FAM98A	25940	hgsc.bcm.edu	36	2	33663941	33663941	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_015475	exon8	c.G963A	p.P321P	.	.	.
GPR17	2840	hgsc.bcm.edu	36	2	128125483	128125483	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_005291	exon3	c.G788A	p.R263H	.	.	.
CCDC80	151887	hgsc.bcm.edu	36	3	113841142	113841142	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_199511	exon2	c.G301A	p.A101T	.	.	.
DGKG	1608	hgsc.bcm.edu	36	3	187472762	187472762	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_001080744	exon11	c.C975T	p.Y325Y	.	.	.
STAC	6769	hgsc.bcm.edu	36	3	36397220	36397220	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_003149	exon1	c.T81C	p.S27S	.	.	.
CADPS	8618	hgsc.bcm.edu	36	3	62545939	62545939	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_183393	exon8	c.C1538A	p.A513D	.	.	.
C4orf18	51313	hgsc.bcm.edu	36	4	159311631	159311631	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_001128424	exon2	c.G347A	p.S116N	.	.	.
SLC34A2	10568	hgsc.bcm.edu	36	4	25287079	25287079	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_001177999	exon13	c.C1680T	p.P560P	.	.	.
ADD1	118	hgsc.bcm.edu	36	4	2847576	2847576	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_001119	exon2	c.C136T	p.R46C	.	.	.
FBN2	2201	hgsc.bcm.edu	36	5	127650411	127650411	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_001999	exon55	c.G6910A	p.D2304N	.	.	.
PCDHA13	56136	hgsc.bcm.edu	36	5	140243429	140243429	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_031865	exon1	c.G1392T	p.V464V	.	.	.
PCDH24	54825	hgsc.bcm.edu	36	5	175944093	175944093	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_001171976	exon19	c.G2205A	p.S735S	.	.	.
CDH18	1016	hgsc.bcm.edu	36	5	19627016	19627016	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_004934	exon7	c.C906T	p.D302D	.	.	.
C9	735	hgsc.bcm.edu	36	5	39344139	39344139	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_001737	exon8	c.G1190T	p.G397V	.	.	.
DAB2	1601	hgsc.bcm.edu	36	5	39418847	39418847	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_001343	exon10	c.C971A	p.S324X	.	.	.
MAP1B	4131	hgsc.bcm.edu	36	5	71525690	71525690	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_005909	exon5	c.C752T	p.S251L	.	.	.
THBS2	7058	hgsc.bcm.edu	36	6	169367232	169367232	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_003247	exon18	c.C2706T	p.N902N	.	.	.
HIST1H3C	8352	hgsc.bcm.edu	36	6	26153633	26153633	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_003531	exon1	c.C16G	p.Q6E	.	.	.
BAI3	577	hgsc.bcm.edu	36	6	69405877	69405877	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_001704	exon3	c.A589T	p.T197S	.	.	.
EPHA1	2041	hgsc.bcm.edu	36	7	142798940	142798940	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_005232	exon17	c.G2747A	p.R916Q	.	.	.
SEMA3E	9723	hgsc.bcm.edu	36	7	82859876	82859876	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_012431	exon14	c.G1598A	p.R533Q	.	.	.
ABCB4	5244	hgsc.bcm.edu	36	7	86921828	86921828	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_018849	exon5	c.G303A	p.S101S	.	.	.
TMEM130	222865	hgsc.bcm.edu	36	7	98298847	98298847	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_001134450	exon2	c.C198T	p.D66D	.	.	.
COL22A1	169044	hgsc.bcm.edu	36	8	139803473	139803473	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_152888	exon26	c.G2289T	p.P763P	.	.	.
ADHFE1	137872	hgsc.bcm.edu	36	8	67535109	67535109	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_144650	exon13	c.G1175A	p.R392H	.	.	.
CNGB3	54714	hgsc.bcm.edu	36	8	87714208	87714208	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_019098	exon11	c.G1208C	p.R403P	.	.	.
SLC26A7	115111	hgsc.bcm.edu	36	8	92421941	92421941	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_134266	exon8	c.A1012T	p.I338F	.	.	.
GRIN3A	116443	hgsc.bcm.edu	36	9	103425515	103425515	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_133445	exon5	c.C2520T	p.D840D	.	.	.
NIPSNAP3A	25934	hgsc.bcm.edu	36	9	106553222	106553222	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_015469	exon2	c.A225C	p.V75V	.	.	.
COL27A1	85301	hgsc.bcm.edu	36	9	116111502	116111502	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_032888	exon60	c.C5359T	p.R1787C	.	.	.
COL5A1	1289	hgsc.bcm.edu	36	9	136800121	136800121	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_000093	exon25	c.C2277T	p.D759D	.	.	.
SH3GL2	6456	hgsc.bcm.edu	36	9	17776392	17776392	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_003026	exon4	c.G201T	p.K67N	.	.	.
OGT	8473	hgsc.bcm.edu	36	X	70691809	70691810	+	Frame_Shift_Ins	INS	-	-	CC	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	-	-	-	CC	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_181673	exon7	c.743_744insCC	p.H248fs	.	.	.
KLHL13	90293	hgsc.bcm.edu	36	X	116927337	116927337	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_001168300	exon5	c.G1303T	p.G435X	.	.	.
EDA2R	60401	hgsc.bcm.edu	36	X	65741066	65741066	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	dfa93420-7755-4ba2-bb1e-f7ca904294b0	4193ced3-31b3-48f4-b489-85c1dddc0c22	NM_001199687	exon4	c.C274T	p.R92X	.	.	.
