Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
FAM178A	55719	broad.mit.edu	36	10	102666513	102666513	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018121	exon3	c.T381C	p.G127G	.	.	.
TLX1NB	100038246	broad.mit.edu	36	10	102839550	102839550	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001085398	exon3	c.G103T	p.E35X	.	.	.
FBXW4	6468	broad.mit.edu	36	10	103361395	103361395	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022039	exon8	c.C1099T	p.R367C	.	.	.
NOLC1	9221	broad.mit.edu	36	10	103911983	103911983	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004741	exon13	c.C2067T	p.V689V	.	.	.
PSD	5662	broad.mit.edu	36	10	104155222	104155222	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002779	exon12	c.A2197G	p.K733E	.	.	.
SLK	9748	broad.mit.edu	36	10	105751228	105751228	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014720	exon8	c.C901T	p.R301X	.	.	.
SLK	9748	broad.mit.edu	36	10	105758021	105758021	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014720	exon12	c.C2701T	p.R901X	.	.	.
C10orf79	80217	broad.mit.edu	36	10	105895234	105895234	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025145	exon31	c.C3934T	p.R1312C	.	.	.
SORCS1	114815	broad.mit.edu	36	10	108913917	108913917	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052918	exon1	c.C358T	p.R120W	.	.	.
SMC3	9126	broad.mit.edu	36	10	112340778	112340778	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005445	exon17	c.G1710A	p.T570T	.	.	.
SHOC2	8036	broad.mit.edu	36	10	112759038	112759038	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007373	exon7	c.G1327A	p.G443S	.	.	.
TCF7L2	6934	broad.mit.edu	36	10	114915705	114915705	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146285	exon13	c.C1724A	p.T575N	.	.	.
FAM160B1	57700	broad.mit.edu	36	10	116598470	116598470	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020940	exon13	c.G1787A	p.R596Q	.	.	.
ATRNL1	26033	broad.mit.edu	36	10	117016451	117016451	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207303	exon12	c.G1960A	p.A654T	.	.	.
EIF3A	8661	broad.mit.edu	36	10	120809142	120809142	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003750	exon10	c.C1405T	p.R469W	.	.	.
TACC2	10579	broad.mit.edu	36	10	123834183	123834183	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206862	exon4	c.T2178C	p.T726T	.	.	.
TCERG1L	256536	broad.mit.edu	36	10	132948612	132948612	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174937	exon4	c.C756T	p.D252D	.	.	.
ZNF511	118472	broad.mit.edu	36	10	134976295	134976295	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145806	exon6	c.A694G	p.I232V	.	.	.
MTG1	92170	broad.mit.edu	36	10	135065072	135065072	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138384	exon7	c.G561A	p.M187I	.	.	.
FRMD4A	55691	broad.mit.edu	36	10	13775932	13775932	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018027	exon15	c.C1089T	p.S363S	.	.	.
FAM171A1	221061	broad.mit.edu	36	10	15295183	15295183	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010924	exon8	c.A2410G	p.T804A	.	.	.
FAM171A1	221061	broad.mit.edu	36	10	15295992	15295992	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010924	exon8	c.G1601A	p.R534H	.	.	.
CUBN	8029	broad.mit.edu	36	10	17182087	17182087	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081	exon14	c.C1688T	p.A563V	.	.	.
ARMC3	219681	broad.mit.edu	36	10	23330927	23330927	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173081	exon12	c.C1499T	p.A500V	.	.	.
SVIL	6840	broad.mit.edu	36	10	29851469	29851469	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003174	exon14	c.T1987C	p.S663P	.	.	.
KIF5B	3799	broad.mit.edu	36	10	32346170	32346170	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004521	exon24	c.C2668T	p.R890C	.	.	.
PARD3	56288	broad.mit.edu	36	10	34676914	34676914	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001184787	exon15	c.C2203A	p.L735I	.	.	.
PARD3	56288	broad.mit.edu	36	10	35025351	35025351	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184787	exon2	c.T123C	p.D41D	.	.	.
RET	5979	broad.mit.edu	36	10	42930170	42930170	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020975	exon11	c.G2116A	p.V706M	.	.	.
HNRNPF	3185	broad.mit.edu	36	10	43202811	43202811	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098208	exon3	c.A528G	p.I176M	.	.	.
RBP3	5949	broad.mit.edu	36	10	48010272	48010272	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002900	exon1	c.C612A	p.S204S	.	.	.
FRMPD2	143162	broad.mit.edu	36	10	49116113	49116113	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001018071	exon8	c.C848A	p.S283Y	.	.	.
C10orf72	196740	broad.mit.edu	36	10	49955354	49955354	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031746	exon4	c.G550A	p.V184M	.	.	.
C10orf72	196740	broad.mit.edu	36	10	49985812	49985812	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144984	exon2	c.G290A	p.R97Q	.	.	.
ERCC6	2074	broad.mit.edu	36	10	50354311	50354311	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000124	exon12	c.G2338A	p.V780I	.	.	.
CHAT	1103	broad.mit.edu	36	10	50524698	50524698	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142929	exon8	c.C899T	p.A300V	.	.	.
NET1	10276	broad.mit.edu	36	10	5484838	5484838	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005863	exon4	c.C387T	p.S129S	.	.	.
IPMK	253430	broad.mit.edu	36	10	59625950	59625950	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152230	exon6	c.C1144T	p.R382X	.	.	.
IPMK	253430	broad.mit.edu	36	10	59656864	59656864	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152230	exon3	c.C319T	p.R107X	.	.	.
BICC1	80114	broad.mit.edu	36	10	60216741	60216741	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080512	exon5	c.T440C	p.V147A	.	.	.
BICC1	80114	broad.mit.edu	36	10	60232928	60232928	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080512	exon15	c.G2101A	p.A701T	.	.	.
TET1	80312	broad.mit.edu	36	10	70074768	70074768	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030625	exon4	c.G2276A	p.G759D	.	.	.
TYSND1	219743	broad.mit.edu	36	10	71572485	71572485	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173555	exon3	c.G1428A	p.V476V	.	.	.
CDH23	64072	broad.mit.edu	36	10	73131952	73131952	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022124	exon22	c.A2565C	p.K855N	.	.	.
NDST2	8509	broad.mit.edu	36	10	75237935	75237935	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003635	exon3	c.G218A	p.R73Q	.	.	.
CAMK2G	818	broad.mit.edu	36	10	75279036	75279036	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172169	exon6	c.A403G	p.R135G	.	.	.
ITIH5	80760	broad.mit.edu	36	10	7724027	7724027	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030569	exon3	c.G168A	p.V56V	.	.	.
TAF3	83860	broad.mit.edu	36	10	8046201	8046201	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031923	exon3	c.C722A	p.P241H	.	.	.
ZCCHC24	219654	broad.mit.edu	36	10	80862479	80862479	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153367	exon2	c.C288T	p.G96G	.	.	.
C10orf58	84293	broad.mit.edu	36	10	82170334	82170334	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032333	exon2	c.C131T	p.A44V	.	.	.
TMEM20	159371	broad.mit.edu	36	10	95650627	95650627	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153226	exon3	c.C485T	p.T162M	.	.	.
PLCE1	51196	broad.mit.edu	36	10	96015660	96015660	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001165979	exon15	c.G3312A	p.T1104T	.	.	.
NOC3L	64318	broad.mit.edu	36	10	96107043	96107043	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022451	exon4	c.G386A	p.R129H	.	.	.
CYP2C18	1562	broad.mit.edu	36	10	96444734	96444734	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000772	exon4	c.T552C	p.H184H	.	.	.
DCLRE1A	9937	broad.mit.edu	36	10	115602843	115602843	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014881	exon1	c.89delA	p.N30fs	.	.	.
DCLRE1C	64421	broad.mit.edu	36	10	14991105	14991107	+	In_Frame_Del	DEL	CTT	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	CTT	CTT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001033855	exon14	c.1385_1387del	p.462_463del	.	.	.
UBE2D1	7321	broad.mit.edu	36	10	59793419	59793419	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003338	exon4	c.165delT	p.H55fs	.	.	.
PDE6C	5146	broad.mit.edu	36	10	95362825	95362825	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006204	exon1	c.353delC	p.T118fs	.	.	.
NOC3L	64318	broad.mit.edu	36	10	96102796	96102796	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022451	exon7	c.705delA	p.K235fs	.	.	.
AHNAK	79026	broad.mit.edu	36	11	62056495	62056496	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001620	exon5	c.1970_1971insA	p.I657fs	.	.	.
BIRC2	329	broad.mit.edu	36	11	101725857	101725857	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166	exon2	c.T62C	p.I21T	.	.	.
MRVI1	10335	broad.mit.edu	36	11	10554512	10554512	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100163	exon21	c.C2409A	p.A803A	.	.	.
SLN	6588	broad.mit.edu	36	11	107083850	107083850	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003063	exon2	c.G17A	p.R6Q	.	.	.
ATM	472	broad.mit.edu	36	11	107647336	107647336	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000051	exon20	c.G3070A	p.A1024T	.	.	.
ATM	472	broad.mit.edu	36	11	107691966	107691966	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000051	exon42	c.C6114T	p.H2038H	.	.	.
KDELC2	143888	broad.mit.edu	36	11	107853552	107853552	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153705	exon7	c.G1390A	p.V464I	.	.	.
DDX10	1662	broad.mit.edu	36	11	108051636	108051636	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004398	exon3	c.T351C	p.S117S	.	.	.
AMICA1	120425	broad.mit.edu	36	11	117588449	117588449	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153206	exon2	c.G51A	p.P17P	.	.	.
PVRL1	5818	broad.mit.edu	36	11	119041107	119041107	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002855	exon6	c.G1114A	p.G372S	.	.	.
GRIK4	2900	broad.mit.edu	36	11	120332727	120332727	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014619	exon14	c.C1729T	p.H577Y	.	.	.
BSX	390259	broad.mit.edu	36	11	122355240	122355240	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098169	exon2	c.G398A	p.R133H	.	.	.
MUC5B	727897	broad.mit.edu	36	11	1229269	1229269	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002458	exon31	c.C14583T	p.T4861T	.	.	.
CDON	50937	broad.mit.edu	36	11	125336871	125336871	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016952	exon19	c.G3589A	p.V1197I	.	.	.
FAM118B	79607	broad.mit.edu	36	11	125615984	125615984	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024556	exon4	c.A174T	p.Q58H	.	.	.
KIRREL3	84623	broad.mit.edu	36	11	125799848	125799848	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032531	exon17	c.C2174T	p.T725M	.	.	.
KCNJ5	3762	broad.mit.edu	36	11	128286775	128286775	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000890	exon2	c.C397A	p.L133I	.	.	.
ARHGAP32	9743	broad.mit.edu	36	11	128351715	128351715	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014715	exon10	c.G1058A	p.R353H	.	.	.
ST14	6768	broad.mit.edu	36	11	129571510	129571510	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021978	exon10	c.G1180A	p.A394T	.	.	.
NAV2	89797	broad.mit.edu	36	11	20032229	20032229	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001111018	exon18	c.G4317A	p.T1439T	.	.	.
NAV2	89797	broad.mit.edu	36	11	20081526	20081526	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001111018	exon33	c.C6375A	p.H2125Q	.	.	.
TSSC4	10078	broad.mit.edu	36	11	2381062	2381062	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005706	exon2	c.G623A	p.C208Y	.	.	.
LUZP2	338645	broad.mit.edu	36	11	24884166	24884166	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009909	exon6	c.C450T	p.H150H	.	.	.
CSTF3	1479	broad.mit.edu	36	11	33076857	33076857	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001326	exon13	c.T1083C	p.S361S	.	.	.
NAT10	55226	broad.mit.edu	36	11	34110326	34110326	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144030	exon13	c.C1383T	p.Y461Y	.	.	.
ELF5	2001	broad.mit.edu	36	11	34471644	34471644	+	Missense_Mutation	SNP	C	T	T	rs34981489	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001422	exon3	c.G313A	p.G105S	.	.	.
OR52K1	390036	broad.mit.edu	36	11	4466845	4466845	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005171	exon1	c.C139A	p.L47I	.	.	.
NUP160	23279	broad.mit.edu	36	11	47761221	47761221	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015231	exon34	c.C4096T	p.H1366Y	.	.	.
OR4C13	283092	broad.mit.edu	36	11	49931198	49931198	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001955	exon1	c.C648T	p.C216C	.	.	.
OR51V1	283111	broad.mit.edu	36	11	5178353	5178353	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004760	exon1	c.T154C	p.C52R	.	.	.
OR4C15	81309	broad.mit.edu	36	11	55079191	55079191	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001920	exon1	c.T833C	p.L278P	.	.	.
OR8H3	390152	broad.mit.edu	36	11	55646563	55646563	+	Silent	SNP	C	T	T	rs61729740	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005201	exon1	c.C139T	p.L47L	.	.	.
OR8K1	390157	broad.mit.edu	36	11	55870351	55870351	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002907	exon1	c.G261A	p.M87I	.	.	.
TRIM6	117854	broad.mit.edu	36	11	5588601	5588601	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003818	exon8	c.C1004T	p.P335L	.	.	.
TNKS1BP1	85456	broad.mit.edu	36	11	56836647	56836647	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033396	exon5	c.C2091T	p.G697G	.	.	.
TIMM10	26519	broad.mit.edu	36	11	57052814	57052814	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012456	exon3	c.G225T	p.Q75H	.	.	.
TIMM10	26519	broad.mit.edu	36	11	57052901	57052901	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012456	exon3	c.C138T	p.G46G	.	.	.
UBE2L6	9246	broad.mit.edu	36	11	57076524	57076524	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198183	exon4	c.G147A	p.P49P	.	.	.
OR56A1	120796	broad.mit.edu	36	11	6005243	6005243	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001917	exon1	c.G268A	p.A90T	.	.	.
DAK	26007	broad.mit.edu	36	11	60866516	60866516	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015533	exon8	c.C663T	p.H221H	.	.	.
CPSF7	79869	broad.mit.edu	36	11	60940516	60940516	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136040	exon6	c.G602A	p.R201Q	.	.	.
DAGLA	747	broad.mit.edu	36	11	61250114	61250114	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006133	exon6	c.C620T	p.T207M	.	.	.
FEN1	2237	broad.mit.edu	36	11	61320142	61320142	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004111	exon2	c.C733G	p.R245G	.	.	.
FADS2	9415	broad.mit.edu	36	11	61389220	61389220	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004265	exon11	c.G1178A	p.R393Q	.	.	.
AHNAK	79026	broad.mit.edu	36	11	62047634	62047634	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001620	exon5	c.A10831G	p.S3611G	.	.	.
METTL12	751071	broad.mit.edu	36	11	62190989	62190989	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001043229	exon3	c.C613T	p.R205X	.	.	.
SLC22A6	9356	broad.mit.edu	36	11	62507668	62507668	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004790	exon3	c.C545T	p.A182V	.	.	.
SLC22A8	9376	broad.mit.edu	36	11	62517604	62517604	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184732	exon10	c.C1397T	p.T466M	.	.	.
SLC22A11	55867	broad.mit.edu	36	11	64086179	64086179	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018484	exon3	c.G625A	p.G209S	.	.	.
SF1	7536	broad.mit.edu	36	11	64293286	64293286	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201998	exon7	c.G764A	p.R255Q	.	.	.
CDC42BPG	55561	broad.mit.edu	36	11	64356487	64356487	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017525	exon27	c.C3076T	p.R1026C	.	.	.
PCNXL3	399909	broad.mit.edu	36	11	65151460	65151460	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032223	exon22	c.C3533T	p.A1178V	.	.	.
C11orf68	83638	broad.mit.edu	36	11	65442133	65442133	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031450	exon2	c.C252T	p.R84R	.	.	.
NPAS4	266743	broad.mit.edu	36	11	65946889	65946889	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178864	exon4	c.G599A	p.R200H	.	.	.
DCHS1	8642	broad.mit.edu	36	11	6618499	6618499	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003737	exon2	c.G922A	p.D308N	.	.	.
KDM2A	22992	broad.mit.edu	36	11	66778328	66778328	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012308	exon20	c.G3170A	p.R1057H	.	.	.
CABP2	51475	broad.mit.edu	36	11	67047345	67047345	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031204	exon1	c.G29A	p.R10H	.	.	.
C11orf24	53838	broad.mit.edu	36	11	67787753	67787753	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022338	exon3	c.C59T	p.A20V	.	.	.
CPT1A	1374	broad.mit.edu	36	11	68318948	68318948	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031847	exon8	c.T779G	p.L260R	.	.	.
OR10A2	341276	broad.mit.edu	36	11	6848282	6848282	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004460	exon1	c.T721C	p.S241P	.	.	.
MRGPRD	116512	broad.mit.edu	36	11	68504901	68504901	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198923	exon1	c.G131A	p.G44D	.	.	.
CTTN	2017	broad.mit.edu	36	11	69958844	69958844	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005231	exon18	c.C1581T	p.D527D	.	.	.
SHANK2	22941	broad.mit.edu	36	11	70009228	70009228	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012309	exon22	c.C4627T	p.R1543X	.	.	.
SHANK2	22941	broad.mit.edu	36	11	70026022	70026022	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133266	exon4	c.C451T	p.R151W	.	.	.
C2CD3	26005	broad.mit.edu	36	11	73463025	73463025	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015531	exon24	c.G4872A	p.T1624T	.	.	.
C2CD3	26005	broad.mit.edu	36	11	73466944	73466944	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015531	exon23	c.G4467A	p.R1489R	.	.	.
CHRDL2	25884	broad.mit.edu	36	11	74091600	74091600	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015424	exon9	c.G1007T	p.G336V	.	.	.
MYO7A	4647	broad.mit.edu	36	11	76545693	76545693	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127179	exon7	c.C730T	p.R244C	.	.	.
PAK1	5058	broad.mit.edu	36	11	76744361	76744361	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002576	exon7	c.C772T	p.R258X	.	.	.
DLG2	1740	broad.mit.edu	36	11	82921427	82921427	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142700	exon13	c.C1541T	p.A514V	.	.	.
SCUBE2	57758	broad.mit.edu	36	11	9003934	9003934	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020974	exon20	c.C2574T	p.Y858Y	.	.	.
SCUBE2	57758	broad.mit.edu	36	11	9037492	9037492	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020974	exon9	c.G1024A	p.V342M	.	.	.
FAT3	120114	broad.mit.edu	36	11	91725729	91725729	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008781	exon1	c.T803C	p.V268A	.	.	.
FAT3	120114	broad.mit.edu	36	11	92204755	92204755	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008781	exon13	c.A9801G	p.T3267T	.	.	.
FAT3	120114	broad.mit.edu	36	11	92255760	92255760	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008781	exon23	c.G12490A	p.V4164I	.	.	.
WEE1	7465	broad.mit.edu	36	11	9555291	9555291	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143976	exon5	c.C404T	p.A135V	.	.	.
PLEKHA7	144100	broad.mit.edu	36	11	16773038	16773038	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175058	exon18	c.2513delA	p.N838fs	.	.	.
OR52J3	119679	broad.mit.edu	36	11	5025259	5025259	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001916	exon1	c.928delA	p.K310fs	.	.	.
NXF1	10482	broad.mit.edu	36	11	62319971	62319972	+	Frame_Shift_Del	DEL	AG	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	AG	AG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006362	exon17	c.1481_1482del	p.494_494del	.	.	.
TRMT112	51504	broad.mit.edu	36	11	63841148	63841150	+	In_Frame_Del	DEL	CTC	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	CTC	CTC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016404	exon3	c.226_228del	p.76_76del	.	.	.
IGF2AS	51214	broad.mit.edu	36	11	2124114	2124114	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
WT1-AS	51352	broad.mit.edu	36	11	32417041	32417041	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
IFT81	28981	broad.mit.edu	36	12	109114807	109114808	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014055	exon14	c.1470_1471insA	p.V490fs	.	.	.
NUAK1	9891	broad.mit.edu	36	12	104985600	104985600	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014840	exon7	c.C1096T	p.R366W	.	.	.
CKAP4	10970	broad.mit.edu	36	12	105157490	105157490	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006825	exon2	c.G1251T	p.E417D	.	.	.
WSCD2	9671	broad.mit.edu	36	12	107113792	107113792	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014653	exon2	c.G53A	p.R18H	.	.	.
WSCD2	9671	broad.mit.edu	36	12	107128151	107128151	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014653	exon4	c.C621T	p.C207C	.	.	.
CSDA	8531	broad.mit.edu	36	12	10753970	10753970	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003651	exon6	c.A584G	p.E195G	.	.	.
MVK	4598	broad.mit.edu	36	12	108502056	108502056	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114185	exon4	c.C293T	p.P98L	.	.	.
GIT2	9815	broad.mit.edu	36	12	108856245	108856245	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135214	exon18	c.G1942A	p.V648I	.	.	.
ALDH2	217	broad.mit.edu	36	12	110707507	110707507	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000690	exon4	c.T414G	p.D138E	.	.	.
SDSL	113675	broad.mit.edu	36	12	112360170	112360170	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138432	exon9	c.C893A	p.P298H	.	.	.
RNFT2	84900	broad.mit.edu	36	12	115758422	115758422	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032814	exon10	c.C1152T	p.C384C	.	.	.
CAMKK2	10645	broad.mit.edu	36	12	120167405	120167405	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172215	exon14	c.C1345T	p.R449C	.	.	.
BCL7A	605	broad.mit.edu	36	12	120953052	120953052	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020993	exon2	c.G156T	p.T52T	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122977161	122977161	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207437	exon68	c.C11592A	p.S3864R	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122981926	122981926	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207437	exon73	c.G12516A	p.A4172A	.	.	.
SCARB1	949	broad.mit.edu	36	12	123868081	123868081	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005505	exon2	c.G252A	p.P84P	.	.	.
PIWIL1	9271	broad.mit.edu	36	12	129405404	129405404	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004764	exon11	c.G1190A	p.R397H	.	.	.
GPR133	283383	broad.mit.edu	36	12	130188703	130188703	+	Silent	SNP	C	T	T	rs34765022	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198827	exon24	c.C2505T	p.N835N	.	.	.
P2RX2	22953	broad.mit.edu	36	12	131707129	131707129	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174873	exon7	c.G661A	p.G221R	.	.	.
GRIN2B	2904	broad.mit.edu	36	12	13607877	13607877	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000834	exon13	c.G3562A	p.G1188S	.	.	.
EPS8	2059	broad.mit.edu	36	12	15702320	15702320	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004447	exon12	c.C1061T	p.A354V	.	.	.
SLC6A12	6539	broad.mit.edu	36	12	180160	180160	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122847	exon7	c.G629A	p.R210H	.	.	.
TM7SF3	51768	broad.mit.edu	36	12	27018348	27018348	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016551	exon12	c.G1530A	p.P510P	.	.	.
FKBP4	2288	broad.mit.edu	36	12	2777286	2777286	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002014	exon3	c.G381A	p.T127T	.	.	.
TEAD4	7004	broad.mit.edu	36	12	3000084	3000084	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003213	exon9	c.G607A	p.A203T	.	.	.
DNM1L	10059	broad.mit.edu	36	12	32784328	32784328	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012062	exon17	c.G1771T	p.G591X	.	.	.
LRRK2	120892	broad.mit.edu	36	12	38905228	38905228	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198578	exon1	c.G28A	p.E10K	.	.	.
ADAMTS20	80070	broad.mit.edu	36	12	42063930	42063930	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025003	exon30	c.C4570T	p.R1524X	.	.	.
ARID2	196528	broad.mit.edu	36	12	44516871	44516871	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152641	exon8	c.C853T	p.R285W	.	.	.
HDAC7	51564	broad.mit.edu	36	12	46478646	46478646	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098416	exon4	c.G315A	p.L105L	.	.	.
CACNB3	784	broad.mit.edu	36	12	47506484	47506484	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000725	exon10	c.C810T	p.D270D	.	.	.
MLL2	8085	broad.mit.edu	36	12	47718538	47718538	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003482	exon34	c.C8868A	p.T2956T	.	.	.
MLL2	8085	broad.mit.edu	36	12	47719867	47719867	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003482	exon31	c.A7953G	p.G2651G	.	.	.
MLL2	8085	broad.mit.edu	36	12	47732140	47732140	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003482	exon10	c.A1593G	p.A531A	.	.	.
SPATS2	65244	broad.mit.edu	36	12	48174895	48174895	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023071	exon7	c.C369T	p.S123S	.	.	.
NCKAP5L	57701	broad.mit.edu	36	12	48475597	48475597	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037806	exon8	c.C2313T	p.C771C	.	.	.
FAIM2	23017	broad.mit.edu	36	12	48581218	48581218	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012306	exon2	c.C173T	p.A58V	.	.	.
GPD1	2819	broad.mit.edu	36	12	48785721	48785721	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005276	exon3	c.G343T	p.G115C	.	.	.
ACVR1B	91	broad.mit.edu	36	12	50671998	50671998	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020327	exon8	c.A1190T	p.D397V	.	.	.
MFSD5	84975	broad.mit.edu	36	12	51934108	51934108	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032889	exon2	c.A1222G	p.M408V	.	.	.
AAAS	8086	broad.mit.edu	36	12	51987634	51987634	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001173466	exon15	c.C1448T	p.P483L	.	.	.
TARBP2	6895	broad.mit.edu	36	12	52185225	52185225	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004178	exon7	c.C590T	p.A197V	.	.	.
CALCOCO1	57658	broad.mit.edu	36	12	52403690	52403690	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020898	exon4	c.G404T	p.G135V	.	.	.
DCD	117159	broad.mit.edu	36	12	53325234	53325234	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053283	exon4	c.C279T	p.S93S	.	.	.
KIAA0748	9840	broad.mit.edu	36	12	53653566	53653566	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098815	exon3	c.T168C	p.N56N	.	.	.
RDH5	5959	broad.mit.edu	36	12	54401792	54401792	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002905	exon3	c.A363G	p.T121T	.	.	.
ERBB3	2065	broad.mit.edu	36	12	54778810	54778810	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001982	exon23	c.G2693A	p.G898D	.	.	.
SLC39A5	283375	broad.mit.edu	36	12	54916507	54916507	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135195	exon7	c.A1006G	p.S336G	.	.	.
TIMELESS	8914	broad.mit.edu	36	12	55103471	55103471	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003920	exon18	c.C2146T	p.Q716X	.	.	.
BAZ2A	11176	broad.mit.edu	36	12	55279058	55279058	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013449	exon28	c.A5413G	p.I1805V	.	.	.
NACA	4666	broad.mit.edu	36	12	55399402	55399402	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001113203	exon3	c.G2179T	p.A727S	.	.	.
LRP1	4035	broad.mit.edu	36	12	55888196	55888196	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002332	exon77	c.G11968A	p.E3990K	.	.	.
OS9	10956	broad.mit.edu	36	12	56396519	56396519	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017958	exon8	c.A950T	p.E317V	.	.	.
AVPR1A	552	broad.mit.edu	36	12	61830132	61830132	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000706	exon1	c.C752T	p.T251M	.	.	.
SRGAP1	57522	broad.mit.edu	36	12	62808134	62808134	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020762	exon21	c.C2767T	p.R923W	.	.	.
TNFRSF1A	7132	broad.mit.edu	36	12	6313664	6313664	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001065	exon2	c.T47C	p.L16P	.	.	.
MSRB3	253827	broad.mit.edu	36	12	63958905	63958905	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198080	exon1	c.G90A	p.A30A	.	.	.
CPSF6	11052	broad.mit.edu	36	12	67942589	67942589	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007007	exon9	c.G1639A	p.E547K	.	.	.
USP5	8078	broad.mit.edu	36	12	6835573	6835573	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003481	exon4	c.C436T	p.R146W	.	.	.
PTPN6	5777	broad.mit.edu	36	12	6937471	6937471	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002831	exon11	c.C1335T	p.H445H	.	.	.
C1RL	51279	broad.mit.edu	36	12	7140177	7140177	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016546	exon6	c.G1416A	p.V472V	.	.	.
CD163	9332	broad.mit.edu	36	12	7539222	7539222	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203416	exon6	c.G1142A	p.R381H	.	.	.
ACSS3	79611	broad.mit.edu	36	12	80117279	80117279	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024560	exon9	c.C1279T	p.R427X	.	.	.
PPFIA2	8499	broad.mit.edu	36	12	80287039	80287039	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003625	exon12	c.G1332T	p.K444N	.	.	.
DUSP6	1848	broad.mit.edu	36	12	88267397	88267397	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022652	exon2	c.C473T	p.T158I	.	.	.
POC1B	282809	broad.mit.edu	36	12	88390125	88390125	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172240	exon5	c.T511G	p.W171G	.	.	.
EPYC	1833	broad.mit.edu	36	12	89889829	89889829	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004950	exon5	c.G581A	p.R194Q	.	.	.
LUM	4060	broad.mit.edu	36	12	90026377	90026377	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002345	exon2	c.C511A	p.L171M	.	.	.
FGD6	55785	broad.mit.edu	36	12	94128202	94128202	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018351	exon2	c.G989A	p.C330Y	.	.	.
USP44	84101	broad.mit.edu	36	12	94446732	94446732	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042403	exon3	c.G1606A	p.V536I	.	.	.
AMDHD1	144193	broad.mit.edu	36	12	94874830	94874830	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152435	exon4	c.C546T	p.I182I	.	.	.
HAL	3034	broad.mit.edu	36	12	94894568	94894568	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002108	exon19	c.C1702T	p.R568C	.	.	.
CMAS	55907	broad.mit.edu	36	12	22090751	22090751	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018686	exon1	c.247delG	p.G83fs	.	.	.
COL2A1	1280	broad.mit.edu	36	12	46666478	46666478	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033150	exon22	c.1228delC	p.Q410fs	.	.	.
WNT1	7471	broad.mit.edu	36	12	47660615	47660615	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005430	exon3	c.500delG	p.W167fs	.	.	.
NALCN	259232	broad.mit.edu	36	13	100708917	100708917	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052867	exon11	c.C1144T	p.R382W	.	.	.
NALCN	259232	broad.mit.edu	36	13	100742634	100742634	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052867	exon8	c.G884A	p.R295H	.	.	.
ANKRD10	55608	broad.mit.edu	36	13	110330440	110330440	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017664	exon6	c.G808A	p.V270I	.	.	.
ARHGEF7	8874	broad.mit.edu	36	13	110733664	110733664	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001113512	exon15	c.C1816T	p.R606W	.	.	.
MCF2L	23263	broad.mit.edu	36	13	112766651	112766651	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024979	exon6	c.C534T	p.H178H	.	.	.
LAMP1	3916	broad.mit.edu	36	13	113023949	113023949	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005561	exon8	c.G1020A	p.A340A	.	.	.
TFDP1	7027	broad.mit.edu	36	13	113325525	113325525	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007111	exon4	c.T109A	p.S37T	.	.	.
RASA3	22821	broad.mit.edu	36	13	113783182	113783182	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007368	exon20	c.A1913C	p.E638A	.	.	.
ZNF828	283489	broad.mit.edu	36	13	114108664	114108664	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164145	exon3	c.G1245A	p.V415V	.	.	.
TUBA3C	7278	broad.mit.edu	36	13	18649332	18649332	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006001	exon4	c.G791A	p.R264H	.	.	.
SACS	26278	broad.mit.edu	36	13	22803345	22803345	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014363	exon10	c.A12670T	p.I4224L	.	.	.
MIPEP	4285	broad.mit.edu	36	13	23309877	23309877	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005932	exon13	c.C1357A	p.R453S	.	.	.
ATP12A	479	broad.mit.edu	36	13	24161404	24161404	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001185085	exon5	c.A437G	p.Y146C	.	.	.
CENPJ	55835	broad.mit.edu	36	13	24355445	24355445	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018451	exon17	c.A3887C	p.K1296T	.	.	.
GPR12	2835	broad.mit.edu	36	13	26231612	26231612	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005288	exon2	c.G353A	p.G118D	.	.	.
MTUS2	23281	broad.mit.edu	36	13	28960123	28960123	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033602	exon9	c.C3516T	p.D1172D	.	.	.
SLC7A1	6541	broad.mit.edu	36	13	28995525	28995525	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003045	exon7	c.G927A	p.T309T	.	.	.
SLC7A1	6541	broad.mit.edu	36	13	28996324	28996324	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003045	exon6	c.G771A	p.S257S	.	.	.
FAM48A	55578	broad.mit.edu	36	13	36505682	36505682	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017569	exon10	c.C614T	p.A205V	.	.	.
NAA16	79612	broad.mit.edu	36	13	40795288	40795288	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024561	exon5	c.G499T	p.A167S	.	.	.
ENOX1	55068	broad.mit.edu	36	13	42708854	42708854	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127615	exon15	c.T1632C	p.V544V	.	.	.
NUFIP1	26747	broad.mit.edu	36	13	44413406	44413406	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012345	exon10	c.C1423T	p.R475W	.	.	.
SIAH3	283514	broad.mit.edu	36	13	45255657	45255657	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198849	exon2	c.C672T	p.C224C	.	.	.
CDADC1	81602	broad.mit.edu	36	13	48752798	48752798	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030911	exon8	c.T1373C	p.M458T	.	.	.
FAM124A	220108	broad.mit.edu	36	13	50753297	50753297	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145019	exon5	c.C1653T	p.C551C	.	.	.
PCDH17	27253	broad.mit.edu	36	13	57197139	57197139	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040429	exon4	c.C3190A	p.L1064M	.	.	.
MYCBP2	23077	broad.mit.edu	36	13	76622947	76622947	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015057	exon47	c.G7054T	p.A2352S	.	.	.
POU4F1	5457	broad.mit.edu	36	13	78073652	78073652	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006237	exon2	c.G1159A	p.A387T	.	.	.
ABCC4	10257	broad.mit.edu	36	13	94525804	94525804	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005845	exon22	c.C2689T	p.R897W	.	.	.
SLC15A1	6564	broad.mit.edu	36	13	98159880	98159880	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005073	exon14	c.G1014A	p.P338P	.	.	.
TRAF3	7187	broad.mit.edu	36	14	102441556	102441556	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145725	exon12	c.C1389T	p.D463D	.	.	.
KIAA0284	283638	broad.mit.edu	36	14	104415334	104415334	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015005	exon3	c.G53A	p.R18H	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104481034	104481034	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138420	exon7	c.C11799T	p.S3933S	.	.	.
JAG2	3714	broad.mit.edu	36	14	104689402	104689402	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145159	exon7	c.C957T	p.N319N	.	.	.
RNASE7	84659	broad.mit.edu	36	14	20581404	20581404	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032572	exon2	c.A413G	p.Q138R	.	.	.
TOX4	9878	broad.mit.edu	36	14	21030902	21030902	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014828	exon7	c.T1287A	p.A429A	.	.	.
CDH24	64403	broad.mit.edu	36	14	22593887	22593887	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022478	exon4	c.C525T	p.H175H	.	.	.
DHRS2	10202	broad.mit.edu	36	14	23178023	23178023	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005794	exon2	c.G110A	p.R37Q	.	.	.
IRF9	10379	broad.mit.edu	36	14	23705225	23705225	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006084	exon9	c.G1162A	p.A388T	.	.	.
IPO4	79711	broad.mit.edu	36	14	23722661	23722661	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024658	exon20	c.G2038A	p.V680M	.	.	.
GMPR2	51292	broad.mit.edu	36	14	23772368	23772368	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016576	exon1	c.C123A	p.T41T	.	.	.
RALGAPA1	253959	broad.mit.edu	36	14	35164387	35164387	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194301	exon34	c.G5342T	p.R1781M	.	.	.
ABHD12B	145447	broad.mit.edu	36	14	50422257	50422257	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181814	exon5	c.C325T	p.P109S	.	.	.
PYGL	5836	broad.mit.edu	36	14	50441923	50441923	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002863	exon20	c.C2481T	p.N827N	.	.	.
DACT1	51339	broad.mit.edu	36	14	58181924	58181924	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079520	exon4	c.C719T	p.A240V	.	.	.
DAAM1	23002	broad.mit.edu	36	14	58867847	58867847	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014992	exon14	c.T1728C	p.P576P	.	.	.
GPHB5	122876	broad.mit.edu	36	14	62854295	62854295	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145171	exon1	c.C22A	p.L8I	.	.	.
C14orf166B	145497	broad.mit.edu	36	14	76396916	76396916	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194287	exon11	c.A1232C	p.N411T	.	.	.
C14orf159	80017	broad.mit.edu	36	14	90706106	90706106	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102368	exon5	c.C264T	p.G88G	.	.	.
CCDC88C	440193	broad.mit.edu	36	14	90840046	90840046	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080414	exon20	c.C3387T	p.S1129S	.	.	.
TC2N	123036	broad.mit.edu	36	14	91338353	91338353	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128596	exon4	c.C467T	p.S156L	.	.	.
TC2N	123036	broad.mit.edu	36	14	91348485	91348485	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128596	exon3	c.T225C	p.F75F	.	.	.
TRIP11	9321	broad.mit.edu	36	14	91542383	91542383	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004239	exon11	c.C1690T	p.L564L	.	.	.
ITPK1	3705	broad.mit.edu	36	14	92552833	92552833	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142594	exon4	c.G187A	p.V63I	.	.	.
EVL	51466	broad.mit.edu	36	14	99664680	99664680	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016337	exon6	c.559delC	p.P187fs	.	.	.
MIR369	442914	broad.mit.edu	36	14	100601704	100601704	+	RNA	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
POTEB	339010	broad.mit.edu	36	15	19331037	19331037	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207355	exon3	c.C723T	p.T241T	.	.	.
POTEB	339010	broad.mit.edu	36	15	19331344	19331344	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207355	exon2	c.T575C	p.L192P	.	.	.
POTEB	339010	broad.mit.edu	36	15	19336240	19336240	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207355	exon1	c.A61G	p.R21G	.	.	.
MKRN3	7681	broad.mit.edu	36	15	21362280	21362280	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005664	exon1	c.G258A	p.P86P	.	.	.
GABRG3	2567	broad.mit.edu	36	15	25446230	25446230	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033223	exon8	c.C922T	p.P308S	.	.	.
HERC2	8924	broad.mit.edu	36	15	26063454	26063454	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004667	exon72	c.G11100T	p.W3700C	.	.	.
HERC2	8924	broad.mit.edu	36	15	26129858	26129858	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004667	exon44	c.C6954T	p.C2318C	.	.	.
OTUD7A	161725	broad.mit.edu	36	15	29564151	29564151	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130901	exon11	c.G1419A	p.S473S	.	.	.
MEIS2	4212	broad.mit.edu	36	15	35116414	35116414	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170676	exon8	c.G793T	p.G265C	.	.	.
MGA	23269	broad.mit.edu	36	15	39839924	39839924	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164273	exon20	c.C7303T	p.R2435W	.	.	.
TP53BP1	7158	broad.mit.edu	36	15	41500173	41500173	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005657	exon21	c.T4288C	p.S1430P	.	.	.
CTDSPL2	51496	broad.mit.edu	36	15	42538659	42538659	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016396	exon2	c.T155A	p.I52N	.	.	.
SPG11	80208	broad.mit.edu	36	15	42645476	42645476	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025137	exon38	c.G6867A	p.Q2289Q	.	.	.
SHC4	399694	broad.mit.edu	36	15	46905583	46905583	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203349	exon12	c.C1770T	p.V590V	.	.	.
TRPM7	54822	broad.mit.edu	36	15	48674011	48674011	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017672	exon24	c.C3382T	p.L1128L	.	.	.
UNC13C	440279	broad.mit.edu	36	15	52094933	52094933	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080534	exon1	c.A2541T	p.T847T	.	.	.
TCF12	6938	broad.mit.edu	36	15	55341596	55341596	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207037	exon17	c.C1480T	p.R494W	.	.	.
ADAM10	102	broad.mit.edu	36	15	56720302	56720302	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001110	exon8	c.C978T	p.G326G	.	.	.
CILP	8483	broad.mit.edu	36	15	63284758	63284758	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003613	exon5	c.G524A	p.R175H	.	.	.
PARP6	56965	broad.mit.edu	36	15	70345340	70345340	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020214	exon4	c.A128G	p.D43G	.	.	.
EDC3	80153	broad.mit.edu	36	15	72751039	72751039	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142444	exon4	c.T294C	p.N98N	.	.	.
ULK3	25989	broad.mit.edu	36	15	72920877	72920877	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099436	exon4	c.C391T	p.R131W	.	.	.
MPI	4351	broad.mit.edu	36	15	72969927	72969927	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002435	exon2	c.C23A	p.P8Q	.	.	.
PTPN9	5780	broad.mit.edu	36	15	73585107	73585107	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002833	exon7	c.G932A	p.R311H	.	.	.
KIAA1199	57214	broad.mit.edu	36	15	78959160	78959160	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018689	exon4	c.G290A	p.R97Q	.	.	.
KIAA1199	57214	broad.mit.edu	36	15	78960423	78960423	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018689	exon5	c.C508T	p.P170S	.	.	.
WHAMM	123720	broad.mit.edu	36	15	81296683	81296683	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080435	exon9	c.A1920T	p.P640P	.	.	.
ZNF592	9640	broad.mit.edu	36	15	83127766	83127766	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014630	exon4	c.G856A	p.A286T	.	.	.
NTRK3	4916	broad.mit.edu	36	15	86273527	86273527	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002530	exon16	c.C2032T	p.R678X	 NTRK3,breast,NS,Substitution - Missense,+1 	.	.
RLBP1	6017	broad.mit.edu	36	15	87561446	87561446	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000326	exon5	c.G255A	p.A85A	.	.	.
C15orf42	90381	broad.mit.edu	36	15	87947036	87947036	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152259	exon13	c.A2573C	p.N858T	.	.	.
PLIN1	5346	broad.mit.edu	36	15	88015740	88015740	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002666	exon4	c.G310A	p.A104T	.	.	.
IDH2	3418	broad.mit.edu	36	15	88429599	88429599	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002168	exon8	c.C992T	p.T331M	.	.	.
IGF1R	3480	broad.mit.edu	36	15	97068541	97068541	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000875	exon2	c.G322A	p.G108S	.	.	.
LRRK1	79705	broad.mit.edu	36	15	99407376	99407376	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024652	exon23	c.G3304A	p.E1102K	.	.	.
SPRED1	161742	broad.mit.edu	36	15	36401817	36401817	+	Frame_Shift_Del	DEL	G	-	-	rs7182445	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			Illumina HiSeq	NM_152594	exon3	c.291delG	p.K97fs	.	.	.
ZSCAN29	146050	broad.mit.edu	36	15	41443452	41443452	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152455	exon4	c.1643delC	p.P548fs	.	.	.
ZNF609	23060	broad.mit.edu	36	15	62754300	62754300	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015042	exon4	c.2194delA	p.K732fs	.	.	.
MEX3B	84206	broad.mit.edu	36	15	80123025	80123025	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032246	exon2	c.1241delG	p.G414fs	.	.	.
CIITA	4261	broad.mit.edu	36	16	10897122	10897122	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000246	exon3	c.G295A	p.A99T	.	.	.
CLEC16A	23274	broad.mit.edu	36	16	11043633	11043633	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015226	exon14	c.C1682T	p.T561M	.	.	.
CACNA1H	8912	broad.mit.edu	36	16	1205066	1205066	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021098	exon28	c.C5023T	p.R1675W	.	.	.
TPSD1	23430	broad.mit.edu	36	16	1246866	1246866	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012217	exon3	c.C322T	p.L108L	.	.	.
IFT140	9742	broad.mit.edu	36	16	1548113	1548113	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014714	exon19	c.C2223T	p.D741D	.	.	.
ABCC1	4363	broad.mit.edu	36	16	16123491	16123491	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019862	exon23	c.C3372T	p.D1124D	.	.	.
ABCC6	368	broad.mit.edu	36	16	16156070	16156070	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171	exon29	c.T4124C	p.L1375P	.	.	.
RPL3L	6123	broad.mit.edu	36	16	1942900	1942900	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005061	exon3	c.G341A	p.C114Y	.	.	.
NTHL1	4913	broad.mit.edu	36	16	2030162	2030162	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002528	exon5	c.G788A	p.R263H	.	.	.
CRYM	1428	broad.mit.edu	36	16	21186413	21186413	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001014444	exon6	c.G510A	p.L170L	.	.	.
PRKCB	5579	broad.mit.edu	36	16	24104338	24104338	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_212535	exon15	c.C1671T	p.N557N	.	.	.
TNRC6A	27327	broad.mit.edu	36	16	24708359	24708359	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014494	exon6	c.A895G	p.S299G	.	.	.
GTF3C1	2975	broad.mit.edu	36	16	27464255	27464255	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001520	exon2	c.A312G	p.L104L	.	.	.
SEZ6L2	26470	broad.mit.edu	36	16	29791331	29791331	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114100	exon14	c.C2203T	p.P735S	.	.	.
TAOK2	9344	broad.mit.edu	36	16	29898279	29898279	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004783	exon8	c.T604C	p.Y202H	.	.	.
CLDN9	9080	broad.mit.edu	36	16	3003474	3003474	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020982	exon1	c.G110A	p.G37D	.	.	.
CORO1A	11151	broad.mit.edu	36	16	30107219	30107219	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193333	exon11	c.G1102A	p.A368T	.	.	.
TBC1D10B	26000	broad.mit.edu	36	16	30276989	30276989	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015527	exon9	c.G2204A	p.R735Q	.	.	.
MMP25	64386	broad.mit.edu	36	16	3040091	3040091	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022468	exon3	c.C313T	p.R105C	.	.	.
ZNF768	79724	broad.mit.edu	36	16	30444108	30444108	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024671	exon2	c.G854A	p.G285D	.	.	.
ZNF434	54925	broad.mit.edu	36	16	3374606	3374606	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017810	exon5	c.C452T	p.A151V	.	.	.
CREBBP	1387	broad.mit.edu	36	16	3718598	3718598	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004380	exon31	c.C6451T	p.R2151W	.	.	.
CREBBP	1387	broad.mit.edu	36	16	3719535	3719535	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004380	exon31	c.C5514T	p.C1838C	.	.	.
C16orf78	123970	broad.mit.edu	36	16	47987987	47987987	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144602	exon4	c.G547A	p.D183N	.	.	.
C16orf78	123970	broad.mit.edu	36	16	47990571	47990571	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144602	exon5	c.C679T	p.R227W	.	.	.
UBN1	29855	broad.mit.edu	36	16	4842930	4842930	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016936	exon1	c.C11T	p.P4L	.	.	.
SALL1	6299	broad.mit.edu	36	16	49733165	49733165	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002968	exon2	c.A469G	p.S157G	.	.	.
SEC14L5	9717	broad.mit.edu	36	16	4977581	4977581	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014692	exon3	c.C86T	p.T29M	.	.	.
SEC14L5	9717	broad.mit.edu	36	16	4981935	4981935	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014692	exon6	c.T570C	p.D190D	.	.	.
MMP2	4313	broad.mit.edu	36	16	54076809	54076809	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004530	exon4	c.C627T	p.D209D	.	.	.
SLC12A3	6559	broad.mit.edu	36	16	55469566	55469566	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000339	exon9	c.C1172T	p.A391V	.	.	.
CNGB1	1258	broad.mit.edu	36	16	56549850	56549850	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135639	exon11	c.C802A	p.P268T	.	.	.
MMP15	4324	broad.mit.edu	36	16	56629732	56629732	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002428	exon3	c.C373A	p.L125M	.	.	.
CDH5	1003	broad.mit.edu	36	16	64978475	64978475	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001795	exon3	c.C473T	p.A158V	.	.	.
CMTM2	146225	broad.mit.edu	36	16	65171520	65171520	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144673	exon2	c.A376G	p.S126G	.	.	.
CDH16	1014	broad.mit.edu	36	16	65503750	65503750	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004062	exon12	c.G1444A	p.A482T	.	.	.
RLTPR	146206	broad.mit.edu	36	16	66240547	66240547	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013838	exon18	c.G1659A	p.A553A	.	.	.
NFATC3	4775	broad.mit.edu	36	16	66713622	66713622	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173163	exon2	c.A335G	p.Q112R	.	.	.
CDH3	1001	broad.mit.edu	36	16	67279133	67279133	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001793	exon12	c.C1788T	p.N596N	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69512086	69512086	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032821	exon46	c.G7691T	p.G2564V	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69530125	69530125	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032821	exon44	c.G6885T	p.K2295N	.	.	.
DHX38	9785	broad.mit.edu	36	16	70692575	70692575	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014003	exon10	c.G1368A	p.E456E	.	.	.
ZFHX3	463	broad.mit.edu	36	16	71542079	71542079	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006885	exon3	c.C3006T	p.H1002H	.	.	.
CNTNAP4	85445	broad.mit.edu	36	16	75041255	75041255	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033401	exon7	c.T1069C	p.W357R	.	.	.
CNTNAP4	85445	broad.mit.edu	36	16	75086374	75086374	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033401	exon14	c.C2146T	p.R716C	.	.	.
RBFOX1	54715	broad.mit.edu	36	16	7577293	7577293	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145893	exon4	c.G518A	p.R173Q	.	.	.
C16orf46	123775	broad.mit.edu	36	16	79652712	79652712	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152337	exon4	c.G743A	p.C248Y	.	.	.
CDH13	1012	broad.mit.edu	36	16	81808555	81808555	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001257	exon5	c.C588T	p.S196S	.	.	.
NECAB2	54550	broad.mit.edu	36	16	82588346	82588346	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019065	exon9	c.C820T	p.R274C	.	.	.
KLHL36	79786	broad.mit.edu	36	16	83248280	83248280	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024731	exon3	c.G366A	p.T122T	.	.	.
COX4NB	10328	broad.mit.edu	36	16	84371551	84371551	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006067	exon4	c.C408T	p.C136C	.	.	.
GRIN2A	2903	broad.mit.edu	36	16	9770389	9770389	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134408	exon12	c.C2415T	p.N805N	.	.	.
POLR3E	55718	broad.mit.edu	36	16	22241702	22241702	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018119	exon14	c.1017delC	p.S339fs	.	.	.
RBL2	5934	broad.mit.edu	36	16	52054040	52054040	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005611	exon11	c.1532delA	p.Q511fs	.	.	.
PSKH1	5681	broad.mit.edu	36	16	66518799	66518799	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006742	exon3	c.1028delG	p.R343fs	.	.	.
HS3ST3A1	9955	broad.mit.edu	36	17	13340812	13340812	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006042	exon2	c.G648A	p.T216T	.	.	.
HS3ST3A1	9955	broad.mit.edu	36	17	13445070	13445070	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006042	exon1	c.G102A	p.T34T	.	.	.
TRIM16	10626	broad.mit.edu	36	17	15456779	15456779	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006382	exon5	c.C1083T	p.S361S	.	.	.
CENPV	201161	broad.mit.edu	36	17	16192671	16192671	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181716	exon3	c.G563A	p.R188H	.	.	.
RAI1	10743	broad.mit.edu	36	17	17638166	17638166	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030665	exon3	c.G1179A	p.M393I	.	.	.
DRG2	1819	broad.mit.edu	36	17	17950513	17950513	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001388	exon12	c.C996T	p.Y332Y	.	.	.
TOP3A	7156	broad.mit.edu	36	17	18129485	18129485	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004618	exon14	c.C1672T	p.R558W	.	.	.
SPECC1	92521	broad.mit.edu	36	17	20049071	20049071	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033555	exon2	c.C874A	p.L292I	.	.	.
CCDC144NL	339184	broad.mit.edu	36	17	20739695	20739695	+	Silent	SNP	G	A	A	rs7215626	by2Hit2Allele	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004306	exon1	c.C231T	p.R77R	.	.	.
SGSM2	9905	broad.mit.edu	36	17	2215270	2215270	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098509	exon11	c.C1173T	p.F391F	.	.	.
KSR1	8844	broad.mit.edu	36	17	22933930	22933930	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014238	exon5	c.G241T	p.A81S	.	.	.
NOS2	4843	broad.mit.edu	36	17	23112358	23112358	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000625	exon23	c.G2827A	p.V943I	.	.	.
SUZ12	23512	broad.mit.edu	36	17	27291451	27291451	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015355	exon2	c.G308A	p.R103Q	.	.	.
OR1A1	8383	broad.mit.edu	36	17	3066472	3066472	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014565	exon1	c.G808A	p.A270T	.	.	.
PEX12	5193	broad.mit.edu	36	17	30928498	30928498	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000286	exon2	c.A352G	p.M118V	.	.	.
OR1E1	8387	broad.mit.edu	36	17	3248042	3248042	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003553	exon1	c.C413A	p.P138H	.	.	.
SRCIN1	80725	broad.mit.edu	36	17	33988368	33988368	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025248	exon2	c.C225T	p.D75D	.	.	.
FBXL20	84961	broad.mit.edu	36	17	34708836	34708836	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032875	exon5	c.C262T	p.R88X	.	.	.
STARD3	10948	broad.mit.edu	36	17	35072620	35072620	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001165938	exon14	c.C1217T	p.A406V	.	.	.
MSL1	339287	broad.mit.edu	36	17	35535993	35535993	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012241	exon3	c.G11A	p.R4Q	.	.	.
CASC3	22794	broad.mit.edu	36	17	35571684	35571684	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007359	exon4	c.C450T	p.D150D	.	.	.
KRT26	353288	broad.mit.edu	36	17	36180097	36180097	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181539	exon3	c.C615T	p.T205T	.	.	.
KRT33B	3884	broad.mit.edu	36	17	36775043	36775043	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002279	exon5	c.G786A	p.S262S	.	.	.
KRT31	3881	broad.mit.edu	36	17	36807053	36807053	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002277	exon1	c.C265T	p.R89W	.	.	.
KRT15	3866	broad.mit.edu	36	17	36926592	36926592	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002275	exon3	c.C732T	p.H244H	.	.	.
JUP	3728	broad.mit.edu	36	17	37174817	37174817	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021991	exon6	c.A938G	p.Q313R	.	.	.
FKBP10	60681	broad.mit.edu	36	17	37226889	37226889	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021939	exon2	c.C299A	p.T100N	.	.	.
FAM134C	162427	broad.mit.edu	36	17	37987685	37987685	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178126	exon9	c.A1073G	p.Y358C	.	.	.
TMEM106A	113277	broad.mit.edu	36	17	38720744	38720744	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145041	exon3	c.A158G	p.D53G	.	.	.
RUNDC3A	10900	broad.mit.edu	36	17	39747872	39747872	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001144825	exon6	c.G598A	p.D200N	.	.	.
CRHR1	1394	broad.mit.edu	36	17	41263590	41263590	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145147	exon6	c.C462T	p.A154A	.	.	.
SPNS2	124976	broad.mit.edu	36	17	4382605	4382605	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001124758	exon6	c.T812C	p.M271T	.	.	.
PHB	5245	broad.mit.edu	36	17	44841738	44841738	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002634	exon4	c.A347C	p.E116A	.	.	.
RSAD1	55316	broad.mit.edu	36	17	45917122	45917122	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018346	exon9	c.G1230T	p.W410C	.	.	.
MYCBPAP	84073	broad.mit.edu	36	17	45953736	45953736	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032133	exon9	c.G1222A	p.D408N	.	.	.
CACNA1G	8913	broad.mit.edu	36	17	46001308	46001308	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198382	exon2	c.C321T	p.I107I	.	.	.
VMO1	284013	broad.mit.edu	36	17	4636072	4636072	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182566	exon2	c.G211T	p.G71C	.	.	.
BZRAP1	9256	broad.mit.edu	36	17	53740075	53740075	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004758	exon24	c.G4879A	p.V1627I	.	.	.
TRIM37	4591	broad.mit.edu	36	17	54511981	54511981	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005207	exon7	c.C532T	p.R178C	.	.	.
SCN4A	6329	broad.mit.edu	36	17	59392476	59392476	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000334	exon11	c.G1654A	p.A552T	.	.	.
ERN1	2081	broad.mit.edu	36	17	59486918	59486918	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001433	exon13	c.C1521T	p.D507D	.	.	.
WSCD1	23302	broad.mit.edu	36	17	5964519	5964519	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015253	exon9	c.G1542T	p.E514D	.	.	.
RGS9	8787	broad.mit.edu	36	17	60651846	60651846	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003835	exon18	c.G1672A	p.E558K	.	.	.
CCDC46	201134	broad.mit.edu	36	17	61063758	61063758	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199165	exon26	c.T2810C	p.L937P	.	.	.
HELZ	9931	broad.mit.edu	36	17	62572374	62572374	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014877	exon21	c.C2716T	p.R906X	.	.	.
GPRC5C	55890	broad.mit.edu	36	17	69947606	69947606	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018653	exon2	c.C132T	p.S44S	.	.	.
CD300LB	124599	broad.mit.edu	36	17	70031337	70031337	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174892	exon3	c.C530T	p.A177V	.	.	.
SLC16A5	9121	broad.mit.edu	36	17	70601464	70601464	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004695	exon3	c.G138T	p.Q46H	.	.	.
DVL2	1856	broad.mit.edu	36	17	7071486	7071486	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004422	exon12	c.C1324T	p.R442C	.	.	.
KIAA0195	9772	broad.mit.edu	36	17	70998416	70998416	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014738	exon11	c.G1110A	p.T370T	.	.	.
CDK3	1018	broad.mit.edu	36	17	71509591	71509591	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001258	exon3	c.C158T	p.S53L	.	.	.
SPEM1	374768	broad.mit.edu	36	17	7265050	7265050	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199339	exon3	c.G332A	p.R111H	.	.	.
SEC14L1	6397	broad.mit.edu	36	17	72698525	72698525	+	Missense_Mutation	SNP	G	A	A	rs1049416	byCluster;byFrequency	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039573	exon4	c.G109A	p.V37M	.	.	.
SEPT9	10801	broad.mit.edu	36	17	72996407	72996407	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001113495	exon5	c.G792A	p.W264X	.	.	.
TNRC6C	57690	broad.mit.edu	36	17	73582837	73582837	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018996	exon9	c.C2943T	p.D981D	.	.	.
TK1	7083	broad.mit.edu	36	17	73682443	73682443	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003258	exon7	c.G697A	p.A233T	.	.	.
LGALS3BP	3959	broad.mit.edu	36	17	74480003	74480003	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005567	exon6	c.T1008C	p.H336H	.	.	.
DNAH2	146754	broad.mit.edu	36	17	7630333	7630333	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020877	exon39	c.C6296T	p.A2099V	.	.	.
C17orf55	284185	broad.mit.edu	36	17	76893042	76893042	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178519	exon4	c.G718A	p.V240I	.	.	.
CCDC57	284001	broad.mit.edu	36	17	77753027	77753027	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198082	exon2	c.G83A	p.R28H	.	.	.
CD7	924	broad.mit.edu	36	17	77866532	77866532	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006137	exon4	c.C677T	p.S226L	.	.	.
C17orf101	79701	broad.mit.edu	36	17	77966656	77966656	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175902	exon2	c.G211A	p.A71T	.	.	.
WDR45L	56270	broad.mit.edu	36	17	78178453	78178453	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019613	exon4	c.T248C	p.M83T	.	.	.
ALOX12B	242	broad.mit.edu	36	17	7919638	7919638	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001139	exon12	c.G1654T	p.G552C	.	.	.
MYH10	4628	broad.mit.edu	36	17	8336984	8336984	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005964	exon31	c.C4200T	p.D1400D	.	.	.
MYH3	4621	broad.mit.edu	36	17	10496602	10496602	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002470	exon3	c.208delC	p.L70fs	.	.	.
RHOT1	55288	broad.mit.edu	36	17	27553931	27553931	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033566	exon15	c.1231delA	p.K411fs	.	.	.
GEMIN4	50628	broad.mit.edu	36	17	597048	597048	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015721	exon2	c.985delG	p.E329fs	.	.	.
AXIN2	8313	broad.mit.edu	36	17	60962979	60962979	+	Frame_Shift_Del	DEL	G	-	-	rs35415678	byFrequency;by1000genomes	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004655	exon8	c.2062delC	p.L688X	.	.	.
KIAA0195	9772	broad.mit.edu	36	17	71002658	71002658	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014738	exon20	c.2676delC	p.I892fs	.	.	.
MGAT5B	146664	broad.mit.edu	36	17	72413840	72413840	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001199172	exon8	c.1001delC	p.T334fs	.	.	.
TUBB6	84617	broad.mit.edu	36	18	12300964	12300964	+	Silent	SNP	C	T	T	rs34553814	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032525	exon3	c.C189T	p.A63A	.	.	.
TUBB6	84617	broad.mit.edu	36	18	12301032	12301032	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032525	exon3	c.G257A	p.R86Q	.	.	.
MC2R	4158	broad.mit.edu	36	18	13875108	13875108	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000529	exon2	c.G410A	p.R137Q	.	.	.
ROCK1	6093	broad.mit.edu	36	18	16818449	16818449	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005406	exon20	c.C2350T	p.L784L	.	.	.
CABLES1	91768	broad.mit.edu	36	18	19028430	19028430	+	Nonsense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138375	exon3	c.C143G	p.S48X	.	.	.
LAMA3	3909	broad.mit.edu	36	18	19748772	19748772	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127718	exon20	c.G2599A	p.D867N	.	.	.
DSC3	1825	broad.mit.edu	36	18	26863533	26863533	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001941	exon4	c.A414G	p.A138A	.	.	.
KLHL14	57565	broad.mit.edu	36	18	28575953	28575953	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020805	exon3	c.C1005T	p.D335D	.	.	.
SLC39A6	25800	broad.mit.edu	36	18	31948160	31948160	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099406	exon6	c.C916T	p.R306C	.	.	.
ELP2	55250	broad.mit.edu	36	18	31972274	31972274	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018255	exon4	c.A332G	p.Y111C	.	.	.
PIK3C3	5289	broad.mit.edu	36	18	37791591	37791591	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002647	exon2	c.A127C	p.M43L	.	.	.
SETBP1	26040	broad.mit.edu	36	18	40535765	40535765	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015559	exon2	c.G456T	p.K152N	.	.	.
CD226	10666	broad.mit.edu	36	18	65713963	65713963	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006566	exon4	c.C681T	p.S227S	.	.	.
LAMA1	284217	broad.mit.edu	36	18	6961913	6961913	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005559	exon48	c.C6842A	p.S2281Y	.	.	.
FBXO15	201456	broad.mit.edu	36	18	69942774	69942774	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152676	exon7	c.C697A	p.L233M	.	.	.
LAMA1	284217	broad.mit.edu	36	18	7022076	7022076	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005559	exon16	c.G2263A	p.G755S	.	.	.
ZNF236	7776	broad.mit.edu	36	18	72719083	72719083	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007345	exon7	c.C965T	p.A322V	.	.	.
SALL3	27164	broad.mit.edu	36	18	74856001	74856001	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_171999	exon2	c.G3022A	p.A1008T	.	.	.
PTPRM	5797	broad.mit.edu	36	18	8103555	8103555	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002845	exon12	c.A1928G	p.Y643C	.	.	.
PPP4R1	9989	broad.mit.edu	36	18	9540351	9540351	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042388	exon17	c.T2337C	p.Y779Y	.	.	.
ICAM5	7087	broad.mit.edu	36	19	10265738	10265738	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003259	exon8	c.G1734A	p.P578P	.	.	.
TYK2	7297	broad.mit.edu	36	19	10333834	10333834	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003331	exon12	c.C1693T	p.R565W	.	.	.
SMARCA4	6597	broad.mit.edu	36	19	10961020	10961020	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003072	exon7	c.T1146C	p.I382I	.	.	.
SMARCA4	6597	broad.mit.edu	36	19	10997181	10997181	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003072	exon22	c.C3165T	p.I1055I	.	.	.
ZNF440	126070	broad.mit.edu	36	19	11804463	11804463	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152357	exon4	c.G1472A	p.R491H	.	.	.
ATP5D	513	broad.mit.edu	36	19	1195345	1195345	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001687	exon4	c.C416T	p.A139V	.	.	.
CACNA1A	773	broad.mit.edu	36	19	13255088	13255088	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001174080	exon22	c.G3818A	p.R1273Q	.	.	.
ADAMTSL5	339366	broad.mit.edu	36	19	1459093	1459093	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_213604	exon7	c.G505T	p.G169W	.	.	.
ZNF333	84449	broad.mit.edu	36	19	14666848	14666848	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032433	exon3	c.C30T	p.A10A	.	.	.
SLC1A6	6511	broad.mit.edu	36	19	14943641	14943641	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005071	exon2	c.G251A	p.R84H	.	.	.
RAB8A	4218	broad.mit.edu	36	19	16101378	16101378	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005370	exon7	c.C495T	p.L165L	.	.	.
CPAMD8	27151	broad.mit.edu	36	19	16865089	16865089	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015692	exon42	c.G5629A	p.A1877T	.	.	.
JAK3	3718	broad.mit.edu	36	19	17806701	17806701	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000215	exon16	c.G2159A	p.S720N	.	.	.
MAST3	23031	broad.mit.edu	36	19	18106498	18106498	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015016	exon15	c.G1594A	p.A532T	.	.	.
MAST3	23031	broad.mit.edu	36	19	18116452	18116452	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015016	exon22	c.C2674T	p.R892C	.	.	.
KIAA1683	80726	broad.mit.edu	36	19	18239026	18239026	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025249	exon3	c.G324A	p.T108T	.	.	.
ELL	8178	broad.mit.edu	36	19	18418267	18418267	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006532	exon10	c.C1556T	p.S519L	.	.	.
LPAR2	9170	broad.mit.edu	36	19	19596209	19596209	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004720	exon3	c.C912T	p.R304R	.	.	.
ATP13A1	57130	broad.mit.edu	36	19	19625900	19625900	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020410	exon14	c.C1867T	p.R623C	.	.	.
ATP13A1	57130	broad.mit.edu	36	19	19628480	19628480	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020410	exon7	c.C1072T	p.P358S	.	.	.
ZNF429	353088	broad.mit.edu	36	19	21512651	21512651	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001415	exon4	c.T1956C	p.C652C	.	.	.
SPPL2B	56928	broad.mit.edu	36	19	2295557	2295557	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077238	exon12	c.A1182G	p.P394P	.	.	.
TLE6	79816	broad.mit.edu	36	19	2942865	2942865	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143986	exon14	c.A1269C	p.G423G	.	.	.
NFIC	4782	broad.mit.edu	36	19	3403663	3403663	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005597	exon8	c.C1268T	p.P423L	.	.	.
TJP3	27134	broad.mit.edu	36	19	3684756	3684756	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014428	exon6	c.C780T	p.N260N	.	.	.
MATK	4145	broad.mit.edu	36	19	3735219	3735219	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139354	exon4	c.G142A	p.V48I	.	.	.
ANKRD27	84079	broad.mit.edu	36	19	37780958	37780958	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032139	exon29	c.T3086C	p.V1029A	.	.	.
ZFR2	23217	broad.mit.edu	36	19	3782746	3782746	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015174	exon4	c.G510A	p.T170T	.	.	.
ATCAY	85300	broad.mit.edu	36	19	3860578	3860578	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033064	exon7	c.G742T	p.G248C	.	.	.
GPI	2821	broad.mit.edu	36	19	39576005	39576005	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000175	exon10	c.C817T	p.R273C	.	.	.
CD22	933	broad.mit.edu	36	19	40527665	40527665	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001185100	exon10	c.G2129A	p.R710Q	.	.	.
SBSN	374897	broad.mit.edu	36	19	40710730	40710730	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166034	exon1	c.C294A	p.A98A	.	.	.
CREB3L3	84699	broad.mit.edu	36	19	4108142	4108142	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032607	exon3	c.C307T	p.R103C	.	.	.
WDR62	284403	broad.mit.edu	36	19	41282220	41282220	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083961	exon22	c.G2600A	p.R867Q	.	.	.
RYR1	6261	broad.mit.edu	36	19	43648721	43648721	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042723	exon24	c.C3021T	p.S1007S	.	.	.
MAP4K1	11184	broad.mit.edu	36	19	43778171	43778171	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042600	exon28	c.C2218T	p.R740W	.	.	.
HNRNPL	3191	broad.mit.edu	36	19	44023012	44023012	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005335	exon7	c.G509A	p.R170H	.	.	.
TTC9B	148014	broad.mit.edu	36	19	45413974	45413974	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152479	exon3	c.A656T	p.N219I	.	.	.
SHKBP1	92799	broad.mit.edu	36	19	45788830	45788830	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138392	exon18	c.C2001G	p.C667W	.	.	.
ADCK4	79934	broad.mit.edu	36	19	45901355	45901355	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024876	exon9	c.G730T	p.A244S	.	.	.
CYP2A7	1549	broad.mit.edu	36	19	46076612	46076612	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000764	exon5	c.C724T	p.Q242X	.	.	.
B9D2	80776	broad.mit.edu	36	19	46552614	46552614	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030578	exon4	c.G359A	p.R120Q	.	.	.
MEGF8	1954	broad.mit.edu	36	19	47539565	47539565	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001410	exon9	c.G1610A	p.R537H	.	.	.
MEGF8	1954	broad.mit.edu	36	19	47567452	47567452	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001410	exon40	c.G7046A	p.R2349H	.	.	.
CEACAM8	1088	broad.mit.edu	36	19	47784852	47784852	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001816	exon4	c.C882T	p.S294S	.	.	.
PSG8	440533	broad.mit.edu	36	19	47951010	47951010	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130168	exon3	c.C592T	p.R198C	.	.	.
ZNF428	126299	broad.mit.edu	36	19	48803760	48803760	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182498	exon3	c.C416T	p.P139L	.	.	.
PLAUR	5329	broad.mit.edu	36	19	48842538	48842538	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005376	exon7	c.C757T	p.R253C	.	.	.
ZNF284	342909	broad.mit.edu	36	19	49282514	49282514	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037813	exon5	c.G1043A	p.C348Y	.	.	.
HIF3A	64344	broad.mit.edu	36	19	51507271	51507271	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152795	exon7	c.G784A	p.A262T	.	.	.
LIG1	3978	broad.mit.edu	36	19	53330770	53330770	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000234	exon16	c.T1502C	p.M501T	.	.	.
IZUMO1	284359	broad.mit.edu	36	19	53938538	53938538	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182575	exon6	c.T475C	p.C159R	.	.	.
NR1H2	7376	broad.mit.edu	36	19	55572824	55572824	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007121	exon4	c.C66T	p.G22G	.	.	.
SHANK1	50944	broad.mit.edu	36	19	55862323	55862323	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016148	exon22	c.C4706T	p.P1569L	.	.	.
ZNF320	162967	broad.mit.edu	36	19	58085306	58085306	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207333	exon2	c.G15A	p.Q5Q	.	.	.
VN1R2	317701	broad.mit.edu	36	19	58453495	58453495	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173856	exon1	c.G55A	p.A19T	.	.	.
CNOT3	4849	broad.mit.edu	36	19	59347814	59347814	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014516	exon14	c.C1645T	p.R549W	.	.	.
PTPRH	5794	broad.mit.edu	36	19	60407216	60407216	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002842	exon5	c.T632C	p.V211A	.	.	.
ZNF470	388566	broad.mit.edu	36	19	61781183	61781183	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001668	exon6	c.C1574T	p.A525V	.	.	.
ZNF71	58491	broad.mit.edu	36	19	61824687	61824687	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021216	exon3	c.G220A	p.A74T	.	.	.
PEG3	5178	broad.mit.edu	36	19	62017954	62017954	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146186	exon7	c.C3668T	p.S1223L	.	.	.
PEG3	5178	broad.mit.edu	36	19	62019158	62019158	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146186	exon7	c.G2464T	p.G822W	.	.	.
ZNF416	55659	broad.mit.edu	36	19	62775426	62775426	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017879	exon4	c.G1658A	p.G553D	.	.	.
ARHGEF18	23370	broad.mit.edu	36	19	7422152	7422152	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015318	exon7	c.G817T	p.A273S	.	.	.
MYO1F	4542	broad.mit.edu	36	19	8507852	8507852	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012335	exon17	c.C1780T	p.R594X	.	.	.
MUC16	94025	broad.mit.edu	36	19	8946800	8946800	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon1	c.C6015A	p.V2005V	.	.	.
OLFM2	93145	broad.mit.edu	36	19	9826018	9826018	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_058164	exon6	c.C1209T	p.Y403Y	.	.	.
PKN1	5585	broad.mit.edu	36	19	14442408	14442410	+	In_Frame_Del	DEL	GAG	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	GAG	GAG	GAG	-	GAG	GAG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_213560	exon20	c.2476_2478del	p.826_826del	.	.	.
ARHGAP33	115703	broad.mit.edu	36	19	40970475	40970475	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052948	exon21	c.2685delC	p.G895fs	.	.	.
C3P1	388503	broad.mit.edu	36	19	10018501	10018501	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
KIR3DX1	90011	broad.mit.edu	36	19	59738839	59738839	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SLC35A3	23443	broad.mit.edu	36	1	100237462	100237462	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012243	exon3	c.T245C	p.M82T	.	.	.
RTCD1	8634	broad.mit.edu	36	1	100508790	100508790	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003729	exon4	c.C380T	p.A127V	.	.	.
UBE4B	10277	broad.mit.edu	36	1	10115094	10115094	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001105562	exon15	c.C1992T	p.V664V	.	.	.
COL11A1	1301	broad.mit.edu	36	1	103256973	103256973	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001854	exon10	c.G1339A	p.A447T	.	.	.
GPSM2	29899	broad.mit.edu	36	1	109262914	109262914	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013296	exon12	c.C1420T	p.R474X	.	.	.
CELSR2	1952	broad.mit.edu	36	1	109603038	109603038	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001408	exon2	c.T3772G	p.S1258A	.	.	.
AMPD2	271	broad.mit.edu	36	1	109972349	109972349	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004037	exon10	c.C1364T	p.T455M	.	.	.
ALX3	257	broad.mit.edu	36	1	110404881	110404881	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006492	exon4	c.G1029A	p.T343T	.	.	.
RBM15	64783	broad.mit.edu	36	1	110685521	110685521	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022768	exon1	c.T1971C	p.P657P	.	.	.
ANGPTL7	10218	broad.mit.edu	36	1	11172503	11172503	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021146	exon1	c.C280T	p.R94W	.	.	.
BCAS2	10286	broad.mit.edu	36	1	114919844	114919844	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005872	exon4	c.G309A	p.W103X	.	.	.
CSDE1	7812	broad.mit.edu	36	1	115069449	115069449	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130523	exon15	c.G1714A	p.E572K	.	.	.
FBXO2	26232	broad.mit.edu	36	1	11632693	11632693	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012168	exon3	c.G417A	p.V139V	.	.	.
C1orf187	374946	broad.mit.edu	36	1	11697799	11697799	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198545	exon6	c.C884T	p.P295L	.	.	.
PHGDH	26227	broad.mit.edu	36	1	120085996	120085996	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006623	exon10	c.G1162A	p.V388M	.	.	.
NOTCH2	4853	broad.mit.edu	36	1	120263702	120263702	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024408	exon31	c.A5537G	p.D1846G	.	.	.
VPS13D	55187	broad.mit.edu	36	1	12258810	12258810	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018156	exon19	c.C2578T	p.R860C	.	.	.
HFE2	148738	broad.mit.edu	36	1	144127182	144127182	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_213653	exon3	c.C644T	p.T215I	.	.	.
ANKRD35	148741	broad.mit.edu	36	1	144273495	144273495	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144698	exon10	c.C1826T	p.A609V	.	.	.
GPR89B	51463	broad.mit.edu	36	1	145882276	145882276	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016334	exon4	c.C307T	p.R103X	.	.	.
HIST2H3D	653604	broad.mit.edu	36	1	148051480	148051480	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001123375	exon1	c.G381T	p.L127F	.	.	.
PLEKHO1	51177	broad.mit.edu	36	1	148398326	148398326	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016274	exon6	c.G1214A	p.R405Q	.	.	.
CELF3	11189	broad.mit.edu	36	1	149945349	149945349	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007185	exon10	c.G1101A	p.Q367Q	.	.	.
LINGO4	339398	broad.mit.edu	36	1	150040408	150040408	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004432	exon2	c.A1397G	p.D466G	.	.	.
FLG	2312	broad.mit.edu	36	1	150544079	150544079	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002016	exon3	c.G9907A	p.G3303R	.	.	.
FLG	2312	broad.mit.edu	36	1	150549118	150549118	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002016	exon3	c.G4868A	p.R1623Q	.	.	.
FLG	2312	broad.mit.edu	36	1	150549997	150549997	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002016	exon3	c.G3989A	p.G1330D	.	.	.
DENND4B	9909	broad.mit.edu	36	1	152171366	152171366	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014856	exon24	c.C3934T	p.R1312C	.	.	.
JTB	10899	broad.mit.edu	36	1	152216076	152216076	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006694	exon2	c.G121A	p.A41T	.	.	.
TRIM46	80128	broad.mit.edu	36	1	153418960	153418960	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025058	exon8	c.G1514A	p.R505H	.	.	.
THBS3	7059	broad.mit.edu	36	1	153436461	153436461	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007112	exon15	c.C1776T	p.D592D	.	.	.
MEX3A	92312	broad.mit.edu	36	1	154314081	154314081	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001093725	exon2	c.C471A	p.A157A	.	.	.
SMG5	23381	broad.mit.edu	36	1	154502611	154502611	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015327	exon12	c.G1440A	p.S480S	.	.	.
MEF2D	4209	broad.mit.edu	36	1	154713479	154713479	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005920	exon7	c.C804T	p.P268P	.	.	.
ISG20L2	81875	broad.mit.edu	36	1	154963484	154963484	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030980	exon1	c.T585A	p.V195V	.	.	.
INSRR	3645	broad.mit.edu	36	1	155085854	155085854	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014215	exon6	c.G1252A	p.D418N	.	.	.
FCRL5	83416	broad.mit.edu	36	1	155771191	155771191	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031281	exon8	c.G1518C	p.Q506H	.	.	.
CDK11B	984	broad.mit.edu	36	1	1562314	1562314	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033486	exon15	c.A1678G	p.I560V	.	.	.
OR6K3	391114	broad.mit.edu	36	1	156954024	156954024	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005327	exon1	c.G506A	p.C169Y	.	.	.
IGSF9	57549	broad.mit.edu	36	1	158167946	158167946	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135050	exon12	c.G1434A	p.K478K	.	.	.
DDI2	84301	broad.mit.edu	36	1	15829442	15829442	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032341	exon3	c.C304T	p.P102S	.	.	.
NCSTN	23385	broad.mit.edu	36	1	158590637	158590637	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015331	exon11	c.C1285T	p.R429X	.	.	.
F11R	50848	broad.mit.edu	36	1	159237538	159237538	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016946	exon3	c.T137C	p.V46A	.	.	.
FCRLB	127943	broad.mit.edu	36	1	159962355	159962355	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002901	exon4	c.C428T	p.A143V	.	.	.
OLFML2B	25903	broad.mit.edu	36	1	160220623	160220623	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015441	exon8	c.C1719T	p.G573G	.	.	.
NOS1AP	9722	broad.mit.edu	36	1	160591705	160591705	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164757	exon7	c.A685G	p.S229G	.	.	.
RXRG	6258	broad.mit.edu	36	1	163664754	163664754	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006917	exon2	c.C123T	p.S41S	.	.	.
NME7	29922	broad.mit.edu	36	1	167560299	167560299	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013330	exon2	c.C67T	p.R23C	.	.	.
F5	2153	broad.mit.edu	36	1	167754315	167754315	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000130	exon23	c.C6304T	p.R2102C	.	.	.
KIFAP3	22920	broad.mit.edu	36	1	168157479	168157479	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014970	exon20	c.C2341T	p.R781C	.	.	.
ATP13A2	23400	broad.mit.edu	36	1	17204803	17204803	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022089	exon2	c.C68G	p.T23R	.	.	.
TNR	7143	broad.mit.edu	36	1	173632452	173632452	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003285	exon5	c.T1091C	p.L364P	.	.	.
PADI6	353238	broad.mit.edu	36	1	17597908	17597908	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207421	exon15	c.C1830T	p.C610C	.	.	.
RCC2	55920	broad.mit.edu	36	1	17612172	17612172	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136204	exon9	c.C1297T	p.R433W	.	.	.
SEC16B	89866	broad.mit.edu	36	1	176194634	176194634	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033127	exon9	c.G1098A	p.L366L	.	.	.
CACNA1E	777	broad.mit.edu	36	1	180032564	180032564	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000721	exon46	c.C6217T	p.R2073C	.	.	.
CRB1	23418	broad.mit.edu	36	1	195657051	195657051	+	Silent	SNP	C	T	T	rs35193230	byFrequency	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201253	exon6	c.C1470T	p.G490G	.	.	.
PTPRC	5788	broad.mit.edu	36	1	196970134	196970134	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080921	exon19	c.C1745T	p.A582V	.	.	.
PRKCZ	5590	broad.mit.edu	36	1	1976779	1976779	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002744	exon2	c.C111T	p.F37F	.	.	.
IPO9	55705	broad.mit.edu	36	1	200084318	200084318	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018085	exon4	c.G487A	p.V163I	.	.	.
PRELP	5549	broad.mit.edu	36	1	201719712	201719712	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002725	exon2	c.C777T	p.N259N	.	.	.
DYRK3	8444	broad.mit.edu	36	1	204887690	204887690	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003582	exon3	c.C524T	p.A175V	.	.	.
LAMB3	3914	broad.mit.edu	36	1	207857449	207857449	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017402	exon20	c.C3157T	p.Q1053X	.	.	.
EIF4G3	8672	broad.mit.edu	36	1	21059593	21059593	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003760	exon19	c.A2948G	p.N983S	.	.	.
KCTD3	51133	broad.mit.edu	36	1	213860045	213860045	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016121	exon18	c.C1910T	p.T637I	.	.	.
USH2A	7399	broad.mit.edu	36	1	214491055	214491055	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206933	exon12	c.A1980C	p.G660G	.	.	.
HLX	3142	broad.mit.edu	36	1	219122303	219122303	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021958	exon3	c.C947T	p.T316M	.	.	.
TP53BP2	7159	broad.mit.edu	36	1	222052721	222052721	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031685	exon12	c.G1767T	p.R589R	.	.	.
CELA3A	10136	broad.mit.edu	36	1	22206454	22206454	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005747	exon6	c.C501T	p.T167T	.	.	.
C1orf69	200205	broad.mit.edu	36	1	226429613	226429613	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010867	exon3	c.C847T	p.R283W	.	.	.
RHOU	58480	broad.mit.edu	36	1	226945894	226945894	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021205	exon3	c.G561A	p.A187A	.	.	.
AGT	183	broad.mit.edu	36	1	228912808	228912808	+	Missense_Mutation	SNP	C	T	T	rs61762539	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000029	exon2	c.G412A	p.A138T	.	.	.
TTC13	79573	broad.mit.edu	36	1	229111152	229111152	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024525	exon22	c.C2397T	p.D799D	.	.	.
NID1	4811	broad.mit.edu	36	1	234211640	234211640	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002508	exon16	c.A3121G	p.N1041D	.	.	.
RYR2	6262	broad.mit.edu	36	1	235844330	235844330	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon37	c.G5279A	p.R1760Q	.	.	.
RYR2	6262	broad.mit.edu	36	1	236014689	236014689	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon90	c.A13054G	p.K4352E	.	.	.
EXO1	9156	broad.mit.edu	36	1	240108850	240108850	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130398	exon13	c.C1691T	p.P564L	.	.	.
PLD5	200150	broad.mit.edu	36	1	240319782	240319782	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195811	exon10	c.A1422G	p.V474V	.	.	.
IL28RA	163702	broad.mit.edu	36	1	24356235	24356235	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170743	exon7	c.G1535A	p.R512Q	.	.	.
OR2L3	391192	broad.mit.edu	36	1	246290985	246290985	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004687	exon1	c.T379C	p.F127L	.	.	.
OR2L13	284521	broad.mit.edu	36	1	246329543	246329543	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175911	exon3	c.G243A	p.A81A	.	.	.
OR2M3	127062	broad.mit.edu	36	1	246433696	246433696	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004689	exon1	c.G704A	p.R235H	.	.	.
OR2M7	391196	broad.mit.edu	36	1	246553752	246553752	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004691	exon1	c.G742C	p.V248L	.	.	.
OR2T34	127068	broad.mit.edu	36	1	246804282	246804282	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001821	exon1	c.C400T	p.P134S	.	.	.
CNKSR1	10256	broad.mit.edu	36	1	26387743	26387743	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006314	exon19	c.G1658A	p.R553H	.	.	.
CD52	1043	broad.mit.edu	36	1	26519321	26519321	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001803	exon2	c.G127A	p.G43R	.	.	.
ZDHHC18	84243	broad.mit.edu	36	1	27051881	27051881	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032283	exon7	c.C987A	p.P329P	.	.	.
AHDC1	27245	broad.mit.edu	36	1	27751094	27751094	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029882	exon6	c.C120A	p.P40P	.	.	.
SESN2	83667	broad.mit.edu	36	1	28479844	28479844	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031459	exon10	c.C1387T	p.R463C	.	.	.
RAB42	115273	broad.mit.edu	36	1	28793025	28793025	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152304	exon2	c.G127A	p.V43M	.	.	.
PUM1	9698	broad.mit.edu	36	1	31237886	31237886	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001020658	exon7	c.C1096T	p.Q366X	.	.	.
COL16A1	1307	broad.mit.edu	36	1	31929694	31929694	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001856	exon19	c.C1309T	p.P437S	.	.	.
ADC	113451	broad.mit.edu	36	1	33322268	33322268	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052998	exon5	c.C232T	p.L78L	.	.	.
ZNF362	149076	broad.mit.edu	36	1	33537184	33537184	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152493	exon9	c.C1213T	p.P405S	.	.	.
CSMD2	114784	broad.mit.edu	36	1	33952892	33952892	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052896	exon21	c.C3168T	p.G1056G	.	.	.
GJB3	2707	broad.mit.edu	36	1	35023074	35023074	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024009	exon2	c.C124T	p.R42C	.	.	.
EIF2C4	192670	broad.mit.edu	36	1	36064118	36064118	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017629	exon6	c.T630C	p.S210S	.	.	.
EIF2C1	26523	broad.mit.edu	36	1	36132550	36132550	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012199	exon7	c.C832T	p.R278C	.	.	.
EIF2C3	192669	broad.mit.edu	36	1	36277999	36277999	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177422	exon13	c.C1162T	p.H388Y	.	.	.
OSCP1	127700	broad.mit.edu	36	1	36658758	36658758	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145047	exon8	c.T865A	p.L289M	.	.	.
GNL2	29889	broad.mit.edu	36	1	37807039	37807039	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013285	exon13	c.G1868T	p.R623I	.	.	.
BMP8A	353500	broad.mit.edu	36	1	39763943	39763943	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181809	exon7	c.G1095A	p.A365A	.	.	.
SLFNL1	200172	broad.mit.edu	36	1	41256155	41256155	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144990	exon3	c.C696T	p.G232G	.	.	.
RIMKLA	284716	broad.mit.edu	36	1	42648334	42648334	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173642	exon4	c.G574A	p.V192M	.	.	.
SLC6A9	6536	broad.mit.edu	36	1	44249090	44249090	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201649	exon3	c.G301A	p.G101S	.	.	.
ZSWIM5	57643	broad.mit.edu	36	1	45257257	45257257	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020883	exon14	c.G3014A	p.R1005H	.	.	.
ECHDC2	55268	broad.mit.edu	36	1	53142931	53142931	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198962	exon6	c.C584T	p.A195V	.	.	.
DIO1	1733	broad.mit.edu	36	1	54148206	54148206	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039715	exon3	c.T552G	p.P184P	.	.	.
CHD5	26038	broad.mit.edu	36	1	6114304	6114304	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015557	exon21	c.G3236A	p.R1079Q	.	.	.
CHD5	26038	broad.mit.edu	36	1	6124929	6124929	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015557	exon15	c.T2282C	p.I761T	.	.	.
NFIA	4774	broad.mit.edu	36	1	61590790	61590790	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145512	exon6	c.G916A	p.A306T	.	.	.
ATG4C	84938	broad.mit.edu	36	1	63073069	63073069	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178221	exon9	c.C1047T	p.C349C	.	.	.
EFCAB7	84455	broad.mit.edu	36	1	63763856	63763856	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032437	exon2	c.G25A	p.A9T	.	.	.
RAVER2	55225	broad.mit.edu	36	1	65045606	65045606	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018211	exon9	c.C1502T	p.T501M	.	.	.
RPE65	6121	broad.mit.edu	36	1	68668109	68668109	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000329	exon14	c.G1540A	p.A514T	.	.	.
LRRC7	57554	broad.mit.edu	36	1	69998607	69998607	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020794	exon1	c.C132T	p.F44F	.	.	.
RABGGTB	5876	broad.mit.edu	36	1	76027514	76027514	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004582	exon3	c.G194A	p.R65H	.	.	.
RERE	473	broad.mit.edu	36	1	8341136	8341136	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012102	exon21	c.G4046A	p.R1349Q	.	.	.
SSX2IP	117178	broad.mit.edu	36	1	84885855	84885855	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166295	exon13	c.C1613A	p.T538N	.	.	.
MCOLN3	55283	broad.mit.edu	36	1	85279417	85279417	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018298	exon3	c.T260C	p.V87A	.	.	.
ENO1	2023	broad.mit.edu	36	1	8849844	8849844	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001428	exon6	c.T363A	p.A121A	.	.	.
SLC44A3	126969	broad.mit.edu	36	1	95130459	95130459	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114106	exon14	c.T1655G	p.L552R	.	.	.
PIK3CD	5293	broad.mit.edu	36	1	9705846	9705846	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005026	exon20	c.G2503A	p.A835T	.	.	.
ATP1A1	476	broad.mit.edu	36	1	116748092	116748092	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000701	exon22	c.3015delA	p.R1005fs	.	.	.
INSRR	3645	broad.mit.edu	36	1	155080677	155080677	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014215	exon15	c.2757delG	p.G919fs	.	.	.
IGSF9	57549	broad.mit.edu	36	1	158165076	158165076	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135050	exon19	c.2726delC	p.P909fs	.	.	.
GPR161	23432	broad.mit.edu	36	1	166321493	166321493	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153832	exon8	c.1490delG	p.G497fs	.	.	.
TCEB3	6924	broad.mit.edu	36	1	23950991	23950991	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003198	exon4	c.1387delA	p.K463fs	.	.	.
ZMYM1	79830	broad.mit.edu	36	1	35351773	35351773	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024772	exon10	c.1755delT	p.N585fs	.	.	.
KCNQ4	9132	broad.mit.edu	36	1	41071296	41071298	+	In_Frame_Del	DEL	GAG	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	GAG	GAG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004700	exon11	c.1537_1539del	p.513_513del	.	.	.
ST6GALNAC5	81849	broad.mit.edu	36	1	77301411	77301411	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030965	exon5	c.943delT	p.F315fs	.	.	.
CTBS	1486	broad.mit.edu	36	1	84808333	84808333	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004388	exon3	c.394delA	p.T132fs	.	.	.
BTBD3	22903	broad.mit.edu	36	20	11851989	11851989	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181443	exon5	c.C1061G	p.S354C	.	.	.
C20orf12	55184	broad.mit.edu	36	20	18393962	18393962	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099407	exon2	c.T41C	p.L14S	.	.	.
CRNKL1	51340	broad.mit.edu	36	20	19966196	19966196	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016652	exon14	c.A2150G	p.Q717R	.	.	.
C20orf26	26074	broad.mit.edu	36	20	20217417	20217417	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015585	exon23	c.C2961T	p.Y987Y	.	.	.
RALGAPA2	57186	broad.mit.edu	36	20	20441824	20441824	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020343	exon32	c.A4189G	p.I1397V	.	.	.
THBD	7056	broad.mit.edu	36	20	22976478	22976478	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000361	exon1	c.C1664T	p.A555V	.	.	.
RALY	22913	broad.mit.edu	36	20	32128700	32128700	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016732	exon8	c.C864T	p.S288S	.	.	.
ACSS2	55902	broad.mit.edu	36	20	32977170	32977170	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018677	exon15	c.C1666T	p.R556W	.	.	.
GSS	2937	broad.mit.edu	36	20	32988239	32988239	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000178	exon8	c.G755A	p.R252Q	.	.	.
CPNE1	8904	broad.mit.edu	36	20	33677690	33677690	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152927	exon17	c.G1501A	p.V501M	.	.	.
EPB41L1	2036	broad.mit.edu	36	20	34246668	34246668	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012156	exon13	c.G1453T	p.E485X	.	.	.
C20orf117	140710	broad.mit.edu	36	20	34858766	34858766	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080627	exon13	c.C3415T	p.R1139C	.	.	.
C20orf117	140710	broad.mit.edu	36	20	34864843	34864843	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080627	exon11	c.C3169G	p.Q1057E	.	.	.
TOP1	7150	broad.mit.edu	36	20	39123480	39123480	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003286	exon3	c.C91A	p.R31R	.	.	.
PTPRT	11122	broad.mit.edu	36	20	40166664	40166664	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133170	exon26	c.G3556A	p.D1186N	.	.	.
PTPRT	11122	broad.mit.edu	36	20	40172445	40172445	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133170	exon24	c.G3253A	p.V1085I	.	.	.
SMOX	54498	broad.mit.edu	36	20	4111386	4111386	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175840	exon6	c.C1101T	p.Y367Y	.	.	.
MMP9	4318	broad.mit.edu	36	20	44075401	44075401	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004994	exon9	c.C1431A	p.P477P	.	.	.
NCOA3	8202	broad.mit.edu	36	20	45698372	45698372	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001174087	exon12	c.C1835A	p.P612H	.	.	.
STAU1	6780	broad.mit.edu	36	20	47167157	47167157	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017452	exon11	c.C1302T	p.N434N	.	.	.
DDX27	55661	broad.mit.edu	36	20	47278733	47278733	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017895	exon8	c.G874A	p.V292M	.	.	.
ZNFX1	57169	broad.mit.edu	36	20	47321154	47321154	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021035	exon3	c.G602A	p.R201H	.	.	.
ZFP64	55734	broad.mit.edu	36	20	50202719	50202719	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018197	exon6	c.G1419A	p.T473T	.	.	.
ZFP64	55734	broad.mit.edu	36	20	50203030	50203030	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018197	exon6	c.C1108A	p.P370T	.	.	.
BMP7	655	broad.mit.edu	36	20	55179432	55179432	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001719	exon7	c.G1286A	p.G429D	.	.	.
ZNF831	128611	broad.mit.edu	36	20	57215439	57215439	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178457	exon3	c.C3960A	p.R1320R	.	.	.
PPP1R3D	5509	broad.mit.edu	36	20	57947534	57947534	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006242	exon1	c.C848T	p.A283V	.	.	.
CDH26	60437	broad.mit.edu	36	20	57980572	57980572	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177980	exon4	c.C392T	p.T131M	.	.	.
CDH4	1002	broad.mit.edu	36	20	59918916	59918916	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001794	exon9	c.C1232A	p.A411E	.	.	.
TAF4	6874	broad.mit.edu	36	20	60023143	60023143	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003185	exon2	c.G1376A	p.R459Q	.	.	.
DIDO1	11083	broad.mit.edu	36	20	60996870	60996870	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193370	exon9	c.G2307A	p.T769T	.	.	.
PRPF6	24148	broad.mit.edu	36	20	62101416	62101416	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012469	exon8	c.C883T	p.R295X	.	.	.
KIF16B	55614	broad.mit.edu	36	20	16308401	16308401	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024704	exon19	c.2246delA	p.K749fs	.	.	.
POTED	317754	broad.mit.edu	36	21	13904645	13904645	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174981	exon1	c.C225A	p.S75R	.	.	.
CHODL	140578	broad.mit.edu	36	21	18550819	18550819	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024944	exon2	c.C202A	p.L68I	.	.	.
ADAMTS5	11096	broad.mit.edu	36	21	27248955	27248955	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007038	exon2	c.C1211T	p.A404V	.	.	.
LTN1	26046	broad.mit.edu	36	21	29254849	29254849	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015565	exon12	c.C2352T	p.G784G	.	.	.
HUNK	30811	broad.mit.edu	36	21	32218924	32218924	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014586	exon2	c.C535T	p.R179W	.	.	.
DOPEY2	9980	broad.mit.edu	36	21	36571192	36571192	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005128	exon28	c.C5636A	p.A1879D	.	.	.
HLCS	3141	broad.mit.edu	36	21	37231239	37231239	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000411	exon5	c.G376A	p.E126K	.	.	.
DYRK1A	1859	broad.mit.edu	36	21	37806550	37806550	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130436	exon11	c.G2111A	p.G704D	.	.	.
RSPH1	89765	broad.mit.edu	36	21	42779614	42779614	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080860	exon4	c.G301A	p.G101S	.	.	.
PFKL	5211	broad.mit.edu	36	21	44560810	44560810	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002626	exon9	c.C911T	p.T304M	.	.	.
TRPM2	7226	broad.mit.edu	36	21	44646091	44646091	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003307	exon16	c.C2421T	p.F807F	.	.	.
HUNK	30811	broad.mit.edu	36	21	32218684	32218684	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014586	exon2	c.295delA	p.K99fs	.	.	.
ABCG1	9619	broad.mit.edu	36	21	42566522	42566522	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207629	exon4	c.436delC	p.P146fs	.	.	.
IL17RA	23765	broad.mit.edu	36	22	15964432	15964432	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014339	exon8	c.C811T	p.R271C	.	.	.
TXNRD2	10587	broad.mit.edu	36	22	18247758	18247758	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006440	exon14	c.T1219C	p.C407R	.	.	.
DGCR8	54487	broad.mit.edu	36	22	18460367	18460367	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022720	exon8	c.A1642G	p.I548V	.	.	.
KLHL22	84861	broad.mit.edu	36	22	19142116	19142116	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032775	exon5	c.C1284T	p.Y428Y	.	.	.
PI4KA	5297	broad.mit.edu	36	22	19414262	19414262	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002650	exon5	c.C582T	p.V194V	.	.	.
SNAP29	9342	broad.mit.edu	36	22	19554765	19554765	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004782	exon2	c.A378G	p.K126K	.	.	.
AIFM3	150209	broad.mit.edu	36	22	19657654	19657654	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146288	exon3	c.G108A	p.S36S	.	.	.
TOP3B	8940	broad.mit.edu	36	22	20647241	20647241	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003935	exon12	c.A1229C	p.E410A	.	.	.
SMARCB1	6598	broad.mit.edu	36	22	22465750	22465750	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003073	exon3	c.C237T	p.H79H	.	.	.
ASPHD2	57168	broad.mit.edu	36	22	25160029	25160029	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020437	exon2	c.C448T	p.R150C	.	.	.
EWSR1	2130	broad.mit.edu	36	22	28025662	28025662	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013986	exon17	c.C1767T	p.P589P	.	.	.
SMTN	6525	broad.mit.edu	36	22	29822874	29822874	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006932	exon14	c.G2017A	p.V673I	.	.	.
PISD	23761	broad.mit.edu	36	22	30347668	30347668	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014338	exon5	c.G423A	p.P141P	.	.	.
LARGE	9215	broad.mit.edu	36	22	32352259	32352259	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133642	exon4	c.G460A	p.V154I	.	.	.
HMGXB4	10042	broad.mit.edu	36	22	34019100	34019100	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003681	exon10	c.A1754G	p.Q585R	.	.	.
MYH9	4627	broad.mit.edu	36	22	35048510	35048510	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002473	exon6	c.C615T	p.G205G	.	.	.
MYH9	4627	broad.mit.edu	36	22	35067383	35067383	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002473	exon3	c.C468T	p.T156T	.	.	.
TRIOBP	11078	broad.mit.edu	36	22	36427412	36427412	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039141	exon3	c.G94C	p.A32P	.	.	.
MICALL1	85377	broad.mit.edu	36	22	36653697	36653697	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033386	exon9	c.C1799T	p.A600V	.	.	.
PLA2G6	8398	broad.mit.edu	36	22	36841484	36841484	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199562	exon13	c.G1868A	p.R623H	.	.	.
MKL1	57591	broad.mit.edu	36	22	39144528	39144528	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020831	exon12	c.C1860T	p.S620S	.	.	.
SREBF2	6721	broad.mit.edu	36	22	40592983	40592983	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004599	exon2	c.A291G	p.L97L	.	.	.
TCF20	6942	broad.mit.edu	36	22	40905573	40905573	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005650	exon2	c.G5735A	p.C1912Y	.	.	.
A4GALT	53947	broad.mit.edu	36	22	41419538	41419538	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017436	exon3	c.G364A	p.A122T	.	.	.
C22orf40	150383	broad.mit.edu	36	22	45022805	45022805	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207327	exon2	c.A41G	p.E14G	.	.	.
PKDREJ	10343	broad.mit.edu	36	22	45033513	45033513	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006071	exon1	c.G4371A	p.A1457A	.	.	.
CELSR1	9620	broad.mit.edu	36	22	45238623	45238623	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014246	exon2	c.G3828A	p.P1276P	.	.	.
SELO	83642	broad.mit.edu	36	22	48991406	48991406	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031454	exon5	c.G1290T	p.Q430H	.	.	.
GGT5	2687	broad.mit.edu	36	22	22958868	22958868	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004121	exon4	c.519delG	p.G173fs	.	.	.
A4GALT	53947	broad.mit.edu	36	22	41419701	41419701	+	Frame_Shift_Del	DEL	G	-	-	rs67879429	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017436	exon3	c.201delC	p.P67fs	.	.	.
PDCL3	79031	broad.mit.edu	36	2	100559258	100559258	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024065	exon6	c.G588T	p.W196C	.	.	.
NPAS2	4862	broad.mit.edu	36	2	100973191	100973191	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002518	exon18	c.C1869T	p.S623S	.	.	.
IL1RL1	9173	broad.mit.edu	36	2	102323691	102323691	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003856	exon5	c.T581C	p.V194A	.	.	.
MRPS9	64965	broad.mit.edu	36	2	105071895	105071895	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182640	exon6	c.A511G	p.N171D	.	.	.
UXS1	80146	broad.mit.edu	36	2	106095608	106095608	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025076	exon10	c.C790T	p.P264S	.	.	.
SNTG2	54221	broad.mit.edu	36	2	1069206	1069206	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018968	exon2	c.G75A	p.T25T	.	.	.
FBLN7	129804	broad.mit.edu	36	2	112661377	112661377	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153214	exon8	c.C1143T	p.R381R	.	.	.
ZC3H6	376940	broad.mit.edu	36	2	112806347	112806347	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198581	exon12	c.A3381G	p.P1127P	.	.	.
POLR1B	84172	broad.mit.edu	36	2	113046801	113046801	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001137604	exon12	c.G2098A	p.A700T	.	.	.
POLR1B	84172	broad.mit.edu	36	2	113049311	113049311	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001137604	exon14	c.G2774A	p.S925N	.	.	.
GLI2	2736	broad.mit.edu	36	2	121401473	121401473	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005270	exon2	c.G215A	p.R72K	.	.	.
TRIB2	28951	broad.mit.edu	36	2	12775976	12775976	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021643	exon1	c.G92A	p.R31K	.	.	.
UGGT1	56886	broad.mit.edu	36	2	128646692	128646692	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020120	exon29	c.A3180T	p.K1060N	.	.	.
POTEE	445582	broad.mit.edu	36	2	131702390	131702390	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083538	exon5	c.G1021A	p.A341T	.	.	.
ACMSD	130013	broad.mit.edu	36	2	135337495	135337495	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138326	exon5	c.G310A	p.V104I	.	.	.
ZEB2	9839	broad.mit.edu	36	2	144873388	144873388	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171653	exon7	c.G1764A	p.A588A	.	.	.
NMI	9111	broad.mit.edu	36	2	151840301	151840301	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004688	exon6	c.C577T	p.R193C	.	.	.
PRPF40A	55660	broad.mit.edu	36	2	153237375	153237375	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017892	exon13	c.C1214T	p.A405V	.	.	.
KCNJ3	3760	broad.mit.edu	36	2	155274506	155274506	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002239	exon2	c.T848G	p.L283R	.	.	.
PLA2R1	22925	broad.mit.edu	36	2	160597760	160597760	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007366	exon4	c.C797T	p.T266M	.	.	.
PLA2R1	22925	broad.mit.edu	36	2	160609842	160609842	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007366	exon2	c.T182A	p.L61Q	.	.	.
PXDN	7837	broad.mit.edu	36	2	1632251	1632251	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012293	exon17	c.G2308A	p.V770M	.	.	.
SCN9A	6335	broad.mit.edu	36	2	166764214	166764214	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002977	exon27	c.A5148C	p.E1716D	.	.	.
TTC30A	92104	broad.mit.edu	36	2	178191049	178191049	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152275	exon1	c.G627T	p.K209N	.	.	.
TTN	7273	broad.mit.edu	36	2	179136608	179136608	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon154	c.C55301T	p.P18434L	 TTN,skin,NS,Substitution - Missense,+1 	.	.
TTN	7273	broad.mit.edu	36	2	179142399	179142399	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon154	c.A49510G	p.T16504A	.	.	.
TTN	7273	broad.mit.edu	36	2	179184072	179184072	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon98	c.C23834T	p.A7945V	.	.	.
TTN	7273	broad.mit.edu	36	2	179342698	179342698	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133379	exon37	c.C8855T	p.T2952I	.	.	.
ZNF804A	91752	broad.mit.edu	36	2	185509655	185509655	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194250	exon4	c.T1287C	p.L429L	.	.	.
DNAH7	56171	broad.mit.edu	36	2	196379728	196379728	+	Missense_Mutation	SNP	C	T	T	rs6708527	byHapMap	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018897	exon54	c.G10157A	p.R3386H	.	.	.
CASP8	841	broad.mit.edu	36	2	201847887	201847887	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033356	exon5	c.C581T	p.S194L	.	.	.
ALS2	57679	broad.mit.edu	36	2	202277547	202277547	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020919	exon32	c.A4713G	p.K1571K	.	.	.
NBEAL1	65065	broad.mit.edu	36	2	203724483	203724483	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114132	exon34	c.G5426A	p.R1809H	.	.	.
PARD3B	117583	broad.mit.edu	36	2	205691957	205691957	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057177	exon7	c.G748A	p.E250K	.	.	.
PARD3B	117583	broad.mit.edu	36	2	205745214	205745214	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057177	exon12	c.C1655T	p.A552V	.	.	.
CRYGC	1420	broad.mit.edu	36	2	208702487	208702487	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020989	exon2	c.C175T	p.R59W	.	.	.
APOB	338	broad.mit.edu	36	2	21083839	21083839	+	Missense_Mutation	SNP	G	A	A	rs72653102	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000384	exon26	c.C9406T	p.R3136C	.	.	.
APOB	338	broad.mit.edu	36	2	21088182	21088182	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000384	exon26	c.G5063T	p.G1688V	.	.	.
FN1	2335	broad.mit.edu	36	2	215934999	215934999	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_212476	exon43	c.G6757T	p.E2253X	.	.	.
FN1	2335	broad.mit.edu	36	2	215980270	215980270	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_212476	exon18	c.G2538A	p.S846S	.	.	.
CCDC108	255101	broad.mit.edu	36	2	219600859	219600859	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194302	exon13	c.C1968T	p.V656V	.	.	.
CCDC108	255101	broad.mit.edu	36	2	219603017	219603017	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194302	exon10	c.A1319G	p.Y440C	.	.	.
DOCK10	55619	broad.mit.edu	36	2	225489709	225489709	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014689	exon3	c.T280C	p.S94P	.	.	.
MFF	56947	broad.mit.edu	36	2	227920198	227920198	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020194	exon8	c.G606A	p.S202S	.	.	.
SPHKAP	80309	broad.mit.edu	36	2	228592272	228592272	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142644	exon7	c.G1542T	p.Q514H	.	.	.
TRIP12	9320	broad.mit.edu	36	2	230432513	230432513	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004238	exon3	c.T120C	p.A40A	.	.	.
DGKD	8527	broad.mit.edu	36	2	234031777	234031777	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152879	exon22	c.G2689A	p.A897T	.	.	.
SH3BP4	23677	broad.mit.edu	36	2	235615284	235615284	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014521	exon4	c.C1132T	p.L378L	.	.	.
AGAP1	116987	broad.mit.edu	36	2	236314421	236314421	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037131	exon4	c.C386T	p.P129L	.	.	.
CXCR7	57007	broad.mit.edu	36	2	237154328	237154328	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020311	exon2	c.C481T	p.R161C	.	.	.
CXCR7	57007	broad.mit.edu	36	2	237154403	237154403	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020311	exon2	c.G556A	p.V186I	.	.	.
HDAC4	9759	broad.mit.edu	36	2	239750457	239750457	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006037	exon6	c.G590A	p.S197N	.	.	.
OR6B3	150681	broad.mit.edu	36	2	240633440	240633440	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173351	exon1	c.C723T	p.C241C	.	.	.
PASK	23178	broad.mit.edu	36	2	241725267	241725267	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015148	exon7	c.G962C	p.S321T	.	.	.
PASK	23178	broad.mit.edu	36	2	241726133	241726133	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015148	exon6	c.G784A	p.G262R	.	.	.
FARP2	9855	broad.mit.edu	36	2	241995645	241995645	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014808	exon5	c.C352T	p.R118C	.	.	.
ITSN2	50618	broad.mit.edu	36	2	24376352	24376352	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019595	exon12	c.G1274A	p.R425H	.	.	.
ASXL2	55252	broad.mit.edu	36	2	25820076	25820076	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018263	exon12	c.G2634A	p.V878V	.	.	.
KIF3C	3797	broad.mit.edu	36	2	26057992	26057992	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002254	exon1	c.G299A	p.G100D	.	.	.
GPR113	165082	broad.mit.edu	36	2	26389423	26389423	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145169	exon9	c.G1338A	p.A446A	.	.	.
GTF3C2	2976	broad.mit.edu	36	2	27403117	27403117	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035521	exon19	c.T2665C	p.F889L	.	.	.
IFT172	26160	broad.mit.edu	36	2	27531017	27531017	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015662	exon31	c.C3386T	p.A1129V	.	.	.
GALNT14	79623	broad.mit.edu	36	2	31008537	31008537	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024572	exon10	c.G959T	p.G320V	.	.	.
LTBP1	4052	broad.mit.edu	36	2	33265590	33265590	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000627	exon2	c.G387A	p.T129T	.	.	.
FAM82A1	151393	broad.mit.edu	36	2	38032538	38032538	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144713	exon2	c.G676A	p.D226N	.	.	.
PKDCC	91461	broad.mit.edu	36	2	42137912	42137912	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138370	exon6	c.T1270A	p.C424S	.	.	.
ABCG5	64240	broad.mit.edu	36	2	43912457	43912457	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022436	exon4	c.G456A	p.A152A	.	.	.
SIX3	6496	broad.mit.edu	36	2	45025345	45025345	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005413	exon2	c.C941T	p.A314V	.	.	.
TTC7A	57217	broad.mit.edu	36	2	47059472	47059472	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020458	exon5	c.G686A	p.C229Y	.	.	.
NRXN1	9378	broad.mit.edu	36	2	50619099	50619099	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135659	exon11	c.T2059G	p.L687V	.	.	.
BMP10	27302	broad.mit.edu	36	2	68951776	68951776	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014482	exon1	c.G219A	p.T73T	.	.	.
EGR4	1961	broad.mit.edu	36	2	73372252	73372252	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001965	exon2	c.C1611T	p.G537G	.	.	.
STAMBP	10617	broad.mit.edu	36	2	73928179	73928179	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006463	exon6	c.G533A	p.R178Q	.	.	.
TET3	200424	broad.mit.edu	36	2	74174215	74174215	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144993	exon7	c.C2776T	p.R926W	.	.	.
SEMA4F	10505	broad.mit.edu	36	2	74737195	74737195	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004263	exon2	c.G172A	p.A58T	.	.	.
C2orf3	6936	broad.mit.edu	36	2	75760900	75760900	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003203	exon12	c.G1739A	p.S580N	.	.	.
REG3G	130120	broad.mit.edu	36	2	79106788	79106788	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008387	exon2	c.C61T	p.L21L	.	.	.
LRRTM1	347730	broad.mit.edu	36	2	80383854	80383854	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178839	exon2	c.C602T	p.A201V	.	.	.
SFTPB	6439	broad.mit.edu	36	2	85746305	85746305	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198843	exon6	c.C553T	p.L185L	.	.	.
POLR1A	25885	broad.mit.edu	36	2	86122643	86122643	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015425	exon24	c.G3452A	p.R1151H	.	.	.
KDM3A	55818	broad.mit.edu	36	2	86530509	86530509	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146688	exon3	c.G255A	p.R85R	.	.	.
RPIA	22934	broad.mit.edu	36	2	88817275	88817275	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144563	exon7	c.C705T	p.G235G	.	.	.
UNC50	25972	broad.mit.edu	36	2	98593761	98593761	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014044	exon3	c.C372T	p.G124G	.	.	.
EIF5B	9669	broad.mit.edu	36	2	99373538	99373538	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015904	exon17	c.C2686T	p.P896S	.	.	.
LIMS2	55679	broad.mit.edu	36	2	128114974	128114976	+	In_Frame_Del	DEL	CTT	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	CTT	CTT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001136037	exon8	c.784_786del	p.262_262del	.	.	.
DDX1	1653	broad.mit.edu	36	2	15675833	15675833	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004939	exon16	c.1194delA	p.G398fs	.	.	.
LY75	4065	broad.mit.edu	36	2	160336698	160336699	+	Frame_Shift_Del	DEL	TG	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	TG	TG	TG	-	TG	TG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198760	exon38	c.5363_5364del	p.1788_1788del	.	.	.
PXDN	7837	broad.mit.edu	36	2	1631991	1631991	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012293	exon17	c.2568delC	p.P856fs	.	.	.
SCN3A	6328	broad.mit.edu	36	2	165662063	165662063	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006922	exon23	c.4184delA	p.N1395fs	.	.	.
TTN	7273	broad.mit.edu	36	2	179323293	179323293	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133379	exon46	c.12079delA	p.T4027fs	.	.	.
DNER	92737	broad.mit.edu	36	2	229980298	229980299	+	Frame_Shift_Del	DEL	GT	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	GT	GT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_139072	exon10	c.1616_1617del	p.539_539del	.	.	.
LOC728819	728819	broad.mit.edu	36	2	43756936	43756936	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001101330	exon1	c.30delT	p.F10fs	.	.	.
CD47	961	broad.mit.edu	36	3	109251181	109251181	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001777	exon10	c.A942C	p.K314N	.	.	.
SLC6A11	6538	broad.mit.edu	36	3	10928798	10928798	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014229	exon7	c.G915T	p.Q305H	.	.	.
CCDC80	151887	broad.mit.edu	36	3	113840653	113840653	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199511	exon2	c.G790A	p.G264S	.	.	.
CCDC80	151887	broad.mit.edu	36	3	113841052	113841052	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199511	exon2	c.C391T	p.R131C	.	.	.
SIDT1	54847	broad.mit.edu	36	3	114806484	114806484	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017699	exon14	c.G1375A	p.V459M	.	.	.
ZBTB20	26137	broad.mit.edu	36	3	115553135	115553135	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164343	exon11	c.C261T	p.S87S	.	.	.
ILDR1	286676	broad.mit.edu	36	3	123208658	123208658	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175924	exon2	c.C99A	p.R33R	.	.	.
CASR	846	broad.mit.edu	36	3	123485264	123485264	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000388	exon7	c.C1773T	p.S591S	.	.	.
ADCY5	111	broad.mit.edu	36	3	124492805	124492805	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183357	exon18	c.C3172T	p.R1058C	.	.	.
KALRN	8997	broad.mit.edu	36	3	125531512	125531512	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003947	exon8	c.A1393G	p.T465A	.	.	.
PODXL2	50512	broad.mit.edu	36	3	128840976	128840976	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015720	exon2	c.G269A	p.R90Q	.	.	.
PODXL2	50512	broad.mit.edu	36	3	128862190	128862190	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015720	exon3	c.G629C	p.S210T	.	.	.
RUVBL1	8607	broad.mit.edu	36	3	129303144	129303144	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003707	exon5	c.G551A	p.R184Q	.	.	.
RHO	6010	broad.mit.edu	36	3	130733832	130733832	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000539	exon3	c.G579A	p.T193T	.	.	.
COL6A6	131873	broad.mit.edu	36	3	131768394	131768394	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102608	exon4	c.G1441A	p.A481T	.	.	.
SOX14	8403	broad.mit.edu	36	3	138966503	138966503	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004189	exon1	c.C187T	p.R63W	.	.	.
ESYT3	83850	broad.mit.edu	36	3	139674192	139674192	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031913	exon18	c.G2038A	p.G680R	.	.	.
XPC	7508	broad.mit.edu	36	3	14174888	14174888	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145769	exon9	c.G1388A	p.R463Q	.	.	.
LSM3	27258	broad.mit.edu	36	3	14198160	14198160	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014463	exon2	c.C118T	p.R40X	.	.	.
GRIP2	80852	broad.mit.edu	36	3	14533588	14533588	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080423	exon12	c.C1584T	p.N528N	.	.	.
AADACL2	344752	broad.mit.edu	36	3	152946097	152946097	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207365	exon4	c.C542T	p.T181I	.	.	.
AADACL2	344752	broad.mit.edu	36	3	152957690	152957690	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207365	exon5	c.G824T	p.R275I	.	.	.
P2RY1	5028	broad.mit.edu	36	3	154036852	154036852	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002563	exon1	c.C591T	p.N197N	.	.	.
COLQ	8292	broad.mit.edu	36	3	15472441	15472441	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080539	exon14	c.C1062T	p.D354D	.	.	.
GPR149	344758	broad.mit.edu	36	3	155538742	155538742	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001038705	exon4	c.G1636A	p.A546T	.	.	.
RSRC1	51319	broad.mit.edu	36	3	159322594	159322594	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016625	exon2	c.C7T	p.R3C	.	.	.
MLF1	4291	broad.mit.edu	36	3	159805624	159805624	+	Nonsense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195434	exon9	c.C716G	p.S239X	.	.	.
SMC4	10051	broad.mit.edu	36	3	161618209	161618209	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001002800	exon11	c.G1442A	p.R481Q	.	.	.
KPNA4	3840	broad.mit.edu	36	3	161715966	161715966	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002268	exon12	c.C1000T	p.L334F	.	.	.
OTOL1	131149	broad.mit.edu	36	3	162697409	162697409	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080440	exon1	c.G120A	p.M40I	.	.	.
RFTN1	23180	broad.mit.edu	36	3	16333516	16333516	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015150	exon10	c.G1560A	p.L520L	.	.	.
ZBBX	79740	broad.mit.edu	36	3	168522621	168522621	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024687	exon12	c.T961A	p.L321I	.	.	.
ARPM1	84517	broad.mit.edu	36	3	170968127	170968127	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032487	exon2	c.T906A	p.S302S	.	.	.
LRRC31	79782	broad.mit.edu	36	3	171056973	171056973	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024727	exon5	c.C668A	p.P223H	.	.	.
GHSR	2693	broad.mit.edu	36	3	173648068	173648068	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004122	exon1	c.C830T	p.A277V	.	.	.
TBL1XR1	79718	broad.mit.edu	36	3	178246653	178246653	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024665	exon10	c.G883A	p.A295T	.	.	.
MCCC1	56922	broad.mit.edu	36	3	184237724	184237724	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020166	exon13	c.G1570A	p.D524N	.	.	.
ECE2	9718	broad.mit.edu	36	3	185491322	185491322	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014693	exon16	c.C2168T	p.T723M	.	.	.
ADIPOQ	9370	broad.mit.edu	36	3	188054907	188054907	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004797	exon3	c.G455A	p.C152Y	.	.	.
RNF168	165918	broad.mit.edu	36	3	197714261	197714261	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152617	exon1	c.T181C	p.W61R	.	.	.
SENP5	205564	broad.mit.edu	36	3	198111258	198111258	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152699	exon4	c.C1686T	p.I562I	.	.	.
TOP2B	7155	broad.mit.edu	36	3	25643731	25643731	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001068	exon16	c.G1952A	p.R651H	.	.	.
SLC4A7	9497	broad.mit.edu	36	3	27411086	27411086	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003615	exon20	c.G3017A	p.R1006H	.	.	.
UBP1	7342	broad.mit.edu	36	3	33425244	33425244	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128161	exon9	c.A869G	p.K290R	.	.	.
STAC	6769	broad.mit.edu	36	3	36397213	36397213	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003149	exon1	c.C74T	p.P25L	.	.	.
VILL	50853	broad.mit.edu	36	3	38018300	38018300	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015873	exon12	c.G1424A	p.G475D	.	.	.
SCN5A	6331	broad.mit.edu	36	3	38622511	38622511	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099405	exon10	c.G1273A	p.A425T	.	.	.
SCN11A	11280	broad.mit.edu	36	3	38966808	38966808	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014139	exon1	c.G50A	p.R17H	.	.	.
ANO10	55129	broad.mit.edu	36	3	43593560	43593560	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018075	exon6	c.G790A	p.G264S	.	.	.
ZNF445	353274	broad.mit.edu	36	3	44471793	44471793	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181489	exon3	c.A253G	p.R85G	.	.	.
ZNF501	115560	broad.mit.edu	36	3	44751599	44751599	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145044	exon3	c.C682T	p.R228C	.	.	.
SLC6A20	54716	broad.mit.edu	36	3	45798595	45798595	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022405	exon2	c.G246A	p.P82P	.	.	.
CCR5	1234	broad.mit.edu	36	3	46390071	46390071	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100168	exon3	c.G674A	p.R225Q	.	.	.
LTF	4057	broad.mit.edu	36	3	46466497	46466497	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199149	exon8	c.C776T	p.P259L	.	.	.
NBEAL2	23218	broad.mit.edu	36	3	47015316	47015316	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015175	exon23	c.C3327T	p.D1109D	.	.	.
DHX30	22907	broad.mit.edu	36	3	47866432	47866432	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138615	exon22	c.G3403A	p.V1135M	.	.	.
PLXNB1	5364	broad.mit.edu	36	3	48440460	48440460	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002673	exon3	c.C565A	p.L189M	.	.	.
DAG1	1605	broad.mit.edu	36	3	49544505	49544505	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004393	exon3	c.G1557A	p.P519P	.	.	.
RBM6	10180	broad.mit.edu	36	3	49980238	49980238	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005777	exon3	c.C376T	p.R126W	.	.	.
ZMYND10	51364	broad.mit.edu	36	3	50355627	50355627	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015896	exon6	c.G525A	p.Q175Q	.	.	.
DOCK3	1795	broad.mit.edu	36	3	51102757	51102757	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004947	exon9	c.C607T	p.L203F	.	.	.
RAD54L2	23132	broad.mit.edu	36	3	51671486	51671486	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015106	exon22	c.C3414T	p.S1138S	.	.	.
ALAS1	211	broad.mit.edu	36	3	52212966	52212966	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000688	exon5	c.G475A	p.D159N	.	.	.
STAB1	23166	broad.mit.edu	36	3	52530427	52530427	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015136	exon56	c.C5919T	p.G1973G	.	.	.
CACNA1D	776	broad.mit.edu	36	3	53669312	53669312	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128839	exon5	c.C736T	p.R246X	.	.	.
CACNA1D	776	broad.mit.edu	36	3	53795935	53795935	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128839	exon39	c.G4794T	p.Q1598H	.	.	.
CACNA1D	776	broad.mit.edu	36	3	53820192	53820192	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128839	exon46	c.G6133A	p.E2045K	.	.	.
FLNB	2317	broad.mit.edu	36	3	58130498	58130498	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164317	exon46	c.C7652T	p.A2551V	.	.	.
ACOX2	8309	broad.mit.edu	36	3	58494897	58494897	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003500	exon4	c.C339A	p.D113E	.	.	.
PTPRG	5793	broad.mit.edu	36	3	62228471	62228471	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002841	exon19	c.G2811T	p.R937S	.	.	.
FOXP1	27086	broad.mit.edu	36	3	71330164	71330164	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032682	exon6	c.C59T	p.S20L	.	.	.
CHMP2B	25978	broad.mit.edu	36	3	87377723	87377723	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014043	exon3	c.C296T	p.A99V	.	.	.
LHFPL4	375323	broad.mit.edu	36	3	9522736	9522736	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198560	exon3	c.C558T	p.N186N	.	.	.
CRELD1	78987	broad.mit.edu	36	3	9960631	9960631	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031717	exon11	c.G1094A	p.R365H	.	.	.
CLDND1	56650	broad.mit.edu	36	3	99718609	99718609	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019895	exon5	c.C518T	p.T173M	.	.	.
KALRN	8997	broad.mit.edu	36	3	125624367	125624367	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003947	exon15	c.2555delA	p.E852fs	.	.	.
PLXNA1	5361	broad.mit.edu	36	3	128218081	128218081	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032242	exon15	c.3046delC	p.P1016fs	.	.	.
SETD5	55209	broad.mit.edu	36	3	9492543	9492543	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080517	exon23	c.4097delC	p.T1366fs	.	.	.
CRYBG3	131544	broad.mit.edu	36	3	99078747	99078747	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ADH5	128	broad.mit.edu	36	4	100215110	100215110	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000671	exon7	c.A939G	p.T313T	.	.	.
NHEDC2	133308	broad.mit.edu	36	4	104183908	104183908	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178833	exon9	c.C1140T	p.S380S	.	.	.
ELOVL6	79071	broad.mit.edu	36	4	111246180	111246180	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130721	exon3	c.G143A	p.R48Q	.	.	.
ANK2	287	broad.mit.edu	36	4	114495009	114495009	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001148	exon38	c.C5786T	p.S1929L	.	.	.
SEC24D	9871	broad.mit.edu	36	4	119879873	119879873	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014822	exon18	c.G2256A	p.T752T	.	.	.
ADAD1	132612	broad.mit.edu	36	4	123536895	123536895	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139243	exon7	c.G637A	p.V213I	.	.	.
ANKRD50	57182	broad.mit.edu	36	4	125812476	125812476	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167882	exon3	c.C869T	p.A290V	.	.	.
FAT4	79633	broad.mit.edu	36	4	126457599	126457599	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024582	exon1	c.G583T	p.G195C	.	.	.
FAT4	79633	broad.mit.edu	36	4	126459341	126459341	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024582	exon1	c.C2325T	p.N775N	.	.	.
FAT4	79633	broad.mit.edu	36	4	126631985	126631985	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024582	exon17	c.T14558C	p.M4853T	.	.	.
NKX3-2	579	broad.mit.edu	36	4	13152857	13152857	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001189	exon2	c.G860A	p.R287H	.	.	.
PCDH10	57575	broad.mit.edu	36	4	134291549	134291549	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032961	exon1	c.C804T	p.L268L	.	.	.
SMAD1	4086	broad.mit.edu	36	4	146687485	146687485	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003688	exon5	c.G956A	p.R319Q	.	.	.
POU4F2	5458	broad.mit.edu	36	4	147780931	147780931	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004575	exon2	c.G751A	p.V251M	.	.	.
FBXW7	55294	broad.mit.edu	36	4	153463634	153463634	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018315	exon11	c.G1733A	p.R578Q	 FBXW7,endometrium,NS,Substitution - Nonsense,-1 	.	.
KIAA0922	23240	broad.mit.edu	36	4	154736897	154736897	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015196	exon20	c.A2030G	p.H677R	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155375325	155375325	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017639	exon25	c.G8564A	p.R2855H	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155474028	155474028	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142552	exon5	c.C2782T	p.R928W	.	.	.
TDO2	6999	broad.mit.edu	36	4	157045688	157045688	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005651	exon3	c.C161T	p.A54V	.	.	.
TKTL2	84076	broad.mit.edu	36	4	164613123	164613123	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032136	exon1	c.G1214A	p.R405Q	.	.	.
GLRA3	8001	broad.mit.edu	36	4	175986516	175986516	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042543	exon1	c.C22T	p.R8W	.	.	.
LETM1	3954	broad.mit.edu	36	4	1812904	1812904	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012318	exon3	c.G562A	p.G188S	.	.	.
ODZ3	55714	broad.mit.edu	36	4	183950895	183950895	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080477	exon25	c.C6076T	p.R2026X	.	.	.
ACSL1	2180	broad.mit.edu	36	4	185946840	185946840	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001995	exon3	c.G235A	p.D79N	.	.	.
LRP2BP	55805	broad.mit.edu	36	4	186533764	186533764	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018409	exon3	c.C327T	p.D109D	.	.	.
FAT1	2195	broad.mit.edu	36	4	187777597	187777597	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005245	exon10	c.C7137T	p.D2379D	.	.	.
WHSC1	7468	broad.mit.edu	36	4	1909998	1909998	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133331	exon9	c.C1697T	p.T566M	.	.	.
GPR125	166647	broad.mit.edu	36	4	21998749	21998749	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145290	exon19	c.G3643A	p.E1215K	.	.	.
PPARGC1A	10891	broad.mit.edu	36	4	23425177	23425177	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013261	exon8	c.A1027G	p.N343D	.	.	.
LGI2	55203	broad.mit.edu	36	4	24614496	24614496	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018176	exon8	c.G1313T	p.R438L	.	.	.
TNIP2	79155	broad.mit.edu	36	4	2719332	2719332	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024309	exon2	c.G415A	p.A139T	.	.	.
DOK7	285489	broad.mit.edu	36	4	3445087	3445087	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164673	exon3	c.C257A	p.A86D	.	.	.
TMEM33	55161	broad.mit.edu	36	4	41635406	41635406	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018126	exon2	c.G76T	p.A26S	.	.	.
DCAF4L1	285429	broad.mit.edu	36	4	41679631	41679631	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029955	exon1	c.G1065A	p.P355P	.	.	.
KDR	3791	broad.mit.edu	36	4	55659635	55659635	+	Missense_Mutation	SNP	G	A	A	rs1139774	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002253	exon16	c.C2359T	p.R787W	.	.	.
KIAA1211	57482	broad.mit.edu	36	4	56875975	56875975	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020722	exon8	c.G1550A	p.R517H	.	.	.
TBC1D14	57533	broad.mit.edu	36	4	6976332	6976332	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001113361	exon2	c.C315T	p.C105C	.	.	.
UGT2B7	7364	broad.mit.edu	36	4	69998976	69998976	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001074	exon2	c.C851A	p.P284H	.	.	.
PCGF3	10336	broad.mit.edu	36	4	717506	717506	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006315	exon4	c.G37A	p.A13T	.	.	.
USO1	8615	broad.mit.edu	36	4	76869064	76869064	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003715	exon1	c.G37A	p.A13T	.	.	.
SORCS2	57537	broad.mit.edu	36	4	7728787	7728787	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020777	exon9	c.C1272T	p.Y424Y	.	.	.
SHROOM3	57619	broad.mit.edu	36	4	77880744	77880744	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020859	exon5	c.G2394A	p.P798P	.	.	.
FRAS1	80144	broad.mit.edu	36	4	79553200	79553200	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025074	exon32	c.C4362T	p.I1454I	.	.	.
FRAS1	80144	broad.mit.edu	36	4	79587051	79587051	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025074	exon43	c.T6003C	p.P2001P	.	.	.
UNC5C	8633	broad.mit.edu	36	4	96359343	96359343	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003728	exon9	c.A1445G	p.Y482C	.	.	.
FAM200B	285550	broad.mit.edu	36	4	15298629	15298629	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145191	exon2	c.931delA	p.K311fs	.	.	.
UGT2A1	10941	broad.mit.edu	36	4	70547662	70547662	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006798	exon1	c.290delA	p.N97fs	.	.	.
PCGF3	10336	broad.mit.edu	36	4	718799	718799	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006315	exon5	c.189delC	p.H63fs	.	.	.
WDFY3	23001	broad.mit.edu	36	4	85967030	85967030	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014991	exon10	c.1085delT	p.L362fs	.	.	.
FAM173B	134145	broad.mit.edu	36	5	10292183	10292183	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199133	exon2	c.G302A	p.R101H	.	.	.
YTHDC2	64848	broad.mit.edu	36	5	112919691	112919691	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022828	exon17	c.T2177C	p.V726A	.	.	.
SEMA6A	57556	broad.mit.edu	36	5	115839150	115839150	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020796	exon16	c.G1698A	p.G566G	.	.	.
ZNF474	133923	broad.mit.edu	36	5	121515889	121515889	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207317	exon2	c.G305A	p.R102Q	.	.	.
CSNK1G3	1456	broad.mit.edu	36	5	122909305	122909305	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001044723	exon2	c.C49T	p.R17X	.	.	.
SLC6A18	348932	broad.mit.edu	36	5	1297882	1297882	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182632	exon11	c.C1656T	p.Y552Y	.	.	.
CATSPER3	347732	broad.mit.edu	36	5	134373010	134373010	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178019	exon6	c.G867A	p.M289I	.	.	.
MYOT	9499	broad.mit.edu	36	5	137234464	137234464	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006790	exon2	c.G225T	p.Q75H	.	.	.
CDC23	8697	broad.mit.edu	36	5	137555872	137555872	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004661	exon11	c.G1271A	p.R424Q	.	.	.
CDC23	8697	broad.mit.edu	36	5	137562236	137562236	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004661	exon7	c.G789A	p.S263S	.	.	.
REEP2	51308	broad.mit.edu	36	5	137808085	137808085	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016606	exon4	c.C265T	p.R89C	.	.	.
MGC29506	51237	broad.mit.edu	36	5	138752112	138752112	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016459	exon2	c.G239A	p.R80Q	.	.	.
PCDHA9	9752	broad.mit.edu	36	5	140208358	140208358	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014005	exon1	c.C94A	p.H32N	.	.	.
PCDHB1	29930	broad.mit.edu	36	5	140413262	140413262	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013340	exon1	c.C2023A	p.Q675K	.	.	.
PCDHB13	56123	broad.mit.edu	36	5	140574679	140574679	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018933	exon1	c.C800T	p.A267V	.	.	.
PCDHB14	56122	broad.mit.edu	36	5	140584851	140584851	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018934	exon1	c.C1590T	p.R530R	.	.	.
PCDHGA1	56114	broad.mit.edu	36	5	140692667	140692667	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031993	exon1	c.C2232T	p.D744D	.	.	.
PCDHGA2	56113	broad.mit.edu	36	5	140699205	140699205	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032009	exon1	c.C483T	p.D161D	.	.	.
PCDHGA4	56111	broad.mit.edu	36	5	140714985	140714985	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018917	exon1	c.C34T	p.R12W	.	.	.
PCDHGA10	56106	broad.mit.edu	36	5	140775077	140775077	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032090	exon1	c.G2151A	p.A717A	.	.	.
POU4F3	5459	broad.mit.edu	36	5	145699633	145699633	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002700	exon2	c.C450T	p.G150G	.	.	.
CSNK1A1	1452	broad.mit.edu	36	5	148866870	148866870	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001892	exon8	c.C770T	p.A257V	.	.	.
SLC6A7	6534	broad.mit.edu	36	5	149563769	149563769	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014228	exon10	c.T1307C	p.L436P	.	.	.
TNIP1	10318	broad.mit.edu	36	5	150416660	150416660	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006058	exon6	c.C487T	p.R163C	.	.	.
SLC36A3	285641	broad.mit.edu	36	5	150643827	150643827	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181774	exon8	c.C945A	p.A315A	.	.	.
FAT2	2196	broad.mit.edu	36	5	150914116	150914116	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001447	exon4	c.G3945A	p.T1315T	.	.	.
GALNT10	55568	broad.mit.edu	36	5	153654635	153654635	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198321	exon2	c.G226A	p.D76N	.	.	.
RNF145	153830	broad.mit.edu	36	5	158520944	158520944	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199382	exon10	c.C1576T	p.R526C	.	.	.
RNF145	153830	broad.mit.edu	36	5	158522648	158522648	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199382	exon9	c.T1181C	p.F394S	.	.	.
RNF145	153830	broad.mit.edu	36	5	158533690	158533690	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199382	exon6	c.G718A	p.V240I	.	.	.
UBLCP1	134510	broad.mit.edu	36	5	158642843	158642843	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145049	exon10	c.G847T	p.E283X	.	.	.
C1QTNF2	114898	broad.mit.edu	36	5	159714561	159714561	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031908	exon2	c.C171A	p.P57P	.	.	.
GABRG2	2566	broad.mit.edu	36	5	161427654	161427654	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198904	exon1	c.C71T	p.T24M	.	.	.
WWC1	23286	broad.mit.edu	36	5	167787625	167787625	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161661	exon12	c.C1820T	p.T607M	.	.	.
DOCK2	1794	broad.mit.edu	36	5	169401605	169401605	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004946	exon38	c.A3767C	p.E1256A	.	.	.
MSX2	4488	broad.mit.edu	36	5	174088825	174088825	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002449	exon2	c.G437A	p.R146H	.	.	.
CDHR2	54825	broad.mit.edu	36	5	175940973	175940973	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171976	exon17	c.C1842T	p.G614G	.	.	.
HK3	3101	broad.mit.edu	36	5	176240999	176240999	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002115	exon18	c.C2537T	p.A846V	.	.	.
F12	2161	broad.mit.edu	36	5	176765654	176765654	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000505	exon3	c.G130A	p.G44R	.	.	.
RMND5B	64777	broad.mit.edu	36	5	177503650	177503650	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022762	exon7	c.C629T	p.A210V	.	.	.
GRM6	2916	broad.mit.edu	36	5	178342630	178342630	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000843	exon9	c.G2323A	p.V775M	.	.	.
RAI14	26064	broad.mit.edu	36	5	34858926	34858926	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145522	exon14	c.G1135T	p.D379Y	.	.	.
RAI14	26064	broad.mit.edu	36	5	34859771	34859771	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145522	exon14	c.C1980T	p.N660N	.	.	.
EGFLAM	133584	broad.mit.edu	36	5	38406312	38406312	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152403	exon6	c.C703A	p.R235R	.	.	.
HEATR7B2	133558	broad.mit.edu	36	5	41085273	41085273	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173489	exon14	c.C1367A	p.T456N	.	.	.
PAIP1	10605	broad.mit.edu	36	5	43578939	43578939	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183323	exon4	c.C322A	p.R108S	.	.	.
HCN1	348980	broad.mit.edu	36	5	45297978	45297978	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021072	exon8	c.G2475A	p.T825T	.	.	.
HCN1	348980	broad.mit.edu	36	5	45298450	45298450	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021072	exon8	c.A2003G	p.Y668C	.	.	.
HCN1	348980	broad.mit.edu	36	5	45432410	45432410	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021072	exon4	c.G1171T	p.G391C	.	.	.
ISL1	3670	broad.mit.edu	36	5	50721265	50721265	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002202	exon4	c.C507T	p.A169A	.	.	.
MAP3K1	4214	broad.mit.edu	36	5	56196400	56196400	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005921	exon4	c.G917A	p.R306H	.	.	.
MIER3	166968	broad.mit.edu	36	5	56270480	56270480	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152622	exon4	c.T302C	p.M101T	.	.	.
GPBP1	65056	broad.mit.edu	36	5	56562855	56562855	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022913	exon5	c.G361A	p.G121R	.	.	.
RAB3C	115827	broad.mit.edu	36	5	57949284	57949284	+	Missense_Mutation	SNP	G	A	A	rs11550682	byHapMap	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138453	exon2	c.G82A	p.D28N	.	.	.
ZNF366	167465	broad.mit.edu	36	5	71775727	71775727	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152625	exon5	c.G1847A	p.C616Y	.	.	.
TNPO1	3842	broad.mit.edu	36	5	72232602	72232602	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153188	exon22	c.A2436G	p.S812S	.	.	.
FCHO2	115548	broad.mit.edu	36	5	72406333	72406333	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146032	exon19	c.C1489T	p.R497W	.	.	.
ADCY2	108	broad.mit.edu	36	5	7837558	7837558	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020546	exon19	c.G2465T	p.R822I	.	.	.
CMYA5	202333	broad.mit.edu	36	5	79070547	79070547	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153610	exon2	c.C10203T	p.I3401I	.	.	.
ACOT12	134526	broad.mit.edu	36	5	80667458	80667458	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130767	exon12	c.G1147T	p.E383X	.	.	.
GPR98	84059	broad.mit.edu	36	5	90495374	90495374	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032119	exon90	c.T18822C	p.S6274S	.	.	.
SEMA5A	9037	broad.mit.edu	36	5	9243440	9243440	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003966	exon11	c.C1212T	p.H404H	.	.	.
CAST	831	broad.mit.edu	36	5	96116155	96116155	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173060	exon19	c.1349delA	p.E450fs	.	.	.
BAT2	7916	broad.mit.edu	36	6	31710911	31710912	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004638	exon22	c.5184_5185insC	p.L1728fs	.	.	.
ASCC3	10973	broad.mit.edu	36	6	101064031	101064031	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006828	exon42	c.G6561T	p.Q2187H	.	.	.
TFAP2A	7020	broad.mit.edu	36	6	10523188	10523188	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003220	exon1	c.C17T	p.T6M	.	.	.
BEND3	57673	broad.mit.edu	36	6	107496762	107496762	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080450	exon5	c.C2326T	p.R776W	.	.	.
ARMC2	84071	broad.mit.edu	36	6	109327636	109327636	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032131	exon7	c.C795T	p.D265D	.	.	.
MICAL1	64780	broad.mit.edu	36	6	109878237	109878237	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022765	exon8	c.G1150A	p.A384T	.	.	.
ROS1	6098	broad.mit.edu	36	6	117788225	117788225	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002944	exon22	c.G3418A	p.A1140T	.	.	.
KIAA1244	57221	broad.mit.edu	36	6	138697677	138697677	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020340	exon33	c.C6001T	p.R2001W	.	.	.
GPR126	57211	broad.mit.edu	36	6	142744796	142744796	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001032394	exon5	c.C1085T	p.P362L	.	.	.
PLAGL1	5325	broad.mit.edu	36	6	144304324	144304324	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080955	exon6	c.C1166A	p.P389H	.	.	.
GRM1	2911	broad.mit.edu	36	6	146715132	146715132	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114329	exon5	c.A1240G	p.I414V	.	.	.
AKAP12	9590	broad.mit.edu	36	6	151714762	151714762	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005100	exon4	c.C3543T	p.D1181D	.	.	.
ESR1	2099	broad.mit.edu	36	6	152461760	152461760	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122740	exon9	c.C1754T	p.T585M	.	.	.
SYNJ2	8871	broad.mit.edu	36	6	158410631	158410631	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003898	exon14	c.G1878A	p.S626S	.	.	.
EZR	7430	broad.mit.edu	36	6	159110892	159110892	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001111077	exon11	c.G1163A	p.R388H	.	.	.
MAP3K4	4216	broad.mit.edu	36	6	161439376	161439376	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005922	exon17	c.G3601A	p.A1201T	.	.	.
MLLT4	4301	broad.mit.edu	36	6	168095002	168095002	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040000	exon29	c.G4098A	p.P1366P	.	.	.
WDR27	253769	broad.mit.edu	36	6	169801505	169801505	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182552	exon11	c.G1164A	p.S388S	.	.	.
SLC17A3	10786	broad.mit.edu	36	6	25970613	25970613	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098486	exon3	c.G130A	p.V44I	.	.	.
FKBPL	63943	broad.mit.edu	36	6	32204823	32204823	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022110	exon2	c.G713A	p.R238Q	.	.	.
PNPLA1	285848	broad.mit.edu	36	6	36382083	36382083	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145717	exon7	c.C1421A	p.A474D	.	.	.
KIAA0240	23506	broad.mit.edu	36	6	42932909	42932909	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015349	exon9	c.C2211T	p.H737H	.	.	.
C6orf108	10591	broad.mit.edu	36	6	43301479	43301479	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006443	exon4	c.G495A	p.Q165Q	.	.	.
SLC22A7	10864	broad.mit.edu	36	6	43375739	43375739	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006672	exon4	c.C778T	p.L260L	.	.	.
SLC22A7	10864	broad.mit.edu	36	6	43376927	43376927	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006672	exon5	c.G898A	p.A300T	.	.	.
SLC22A7	10864	broad.mit.edu	36	6	43377336	43377336	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006672	exon6	c.G983A	p.R328Q	.	.	.
DLK2	65989	broad.mit.edu	36	6	43526544	43526544	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023932	exon6	c.G863A	p.R288Q	.	.	.
TCTE1	202500	broad.mit.edu	36	6	44358117	44358117	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182539	exon4	c.G1004A	p.R335H	.	.	.
TCTE1	202500	broad.mit.edu	36	6	44361769	44361769	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182539	exon3	c.C756T	p.C252C	.	.	.
PKHD1	5314	broad.mit.edu	36	6	52055220	52055220	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170724	exon4	c.C210A	p.P70P	.	.	.
ICK	22858	broad.mit.edu	36	6	52984845	52984845	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016513	exon11	c.G1292A	p.S431N	.	.	.
FBXO9	26268	broad.mit.edu	36	6	53065203	53065203	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012347	exon7	c.G701A	p.R234H	.	.	.
ELOVL5	60481	broad.mit.edu	36	6	53248961	53248961	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021814	exon4	c.G299A	p.R100H	.	.	.
TINAG	27283	broad.mit.edu	36	6	54362605	54362605	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014464	exon11	c.C1354T	p.R452X	.	.	.
DST	667	broad.mit.edu	36	6	56592775	56592775	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001723	exon23	c.C4016T	p.P1339L	.	.	.
PHF3	23469	broad.mit.edu	36	6	64452006	64452006	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015153	exon3	c.C424T	p.R142X	.	.	.
BAI3	577	broad.mit.edu	36	6	69723382	69723382	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001704	exon8	c.G1485A	p.T495T	.	.	.
RIMS1	22999	broad.mit.edu	36	6	72863448	72863448	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014989	exon3	c.C321T	p.G107G	.	.	.
DDX43	55510	broad.mit.edu	36	6	74161589	74161589	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018665	exon1	c.C240T	p.G80G	.	.	.
IMPG1	3617	broad.mit.edu	36	6	76808350	76808350	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001563	exon2	c.A281G	p.Q94R	.	.	.
IBTK	25998	broad.mit.edu	36	6	82998253	82998253	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015525	exon4	c.C444T	p.G148G	.	.	.
DOPEY1	23033	broad.mit.edu	36	6	83898747	83898747	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015018	exon18	c.A2750G	p.Q917R	.	.	.
DOPEY1	23033	broad.mit.edu	36	6	83904590	83904590	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015018	exon21	c.C4110T	p.L1370L	.	.	.
ZNF292	23036	broad.mit.edu	36	6	88023099	88023099	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015021	exon8	c.C3033T	p.L1011L	.	.	.
ZNF292	23036	broad.mit.edu	36	6	88026145	88026145	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015021	exon8	c.G6079A	p.A2027T	.	.	.
RNGTT	8732	broad.mit.edu	36	6	89380715	89380715	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003800	exon15	c.C1625T	p.A542V	.	.	.
MDN1	23195	broad.mit.edu	36	6	90453421	90453421	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014611	exon69	c.C11493T	p.T3831T	.	.	.
MDN1	23195	broad.mit.edu	36	6	90539081	90539081	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014611	exon14	c.C2015A	p.P672H	.	.	.
MDN1	23195	broad.mit.edu	36	6	90541091	90541091	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014611	exon13	c.G1904A	p.R635Q	.	.	.
CASP8AP2	9994	broad.mit.edu	36	6	90629099	90629099	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001137667	exon7	c.G950A	p.R317H	.	.	.
NDUFAF4	29078	broad.mit.edu	36	6	97445843	97445843	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014165	exon3	c.T386C	p.F129S	.	.	.
FBXL4	26235	broad.mit.edu	36	6	99460098	99460098	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012160	exon5	c.G1028A	p.R343H	.	.	.
TIAM2	26230	broad.mit.edu	36	6	155603383	155603385	+	In_Frame_Del	DEL	AGG	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	AGG	AGG	AGG	-	AGG	AGG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012454	exon15	c.3196_3198del	p.1066_1066del	.	.	.
DTNBP1	84062	broad.mit.edu	36	6	15632766	15632768	+	In_Frame_Del	DEL	CTC	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	CTC	CTC	CTC	-	CTC	CTC	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032122	exon9	c.779_781del	p.260_261del	.	.	.
MAP3K4	4216	broad.mit.edu	36	6	161389766	161389766	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006724	exon3	c.472delA	p.K158fs	.	.	.
ATXN1	6310	broad.mit.edu	36	6	16414852	16414853	+	Frame_Shift_Del	DEL	TT	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	TT	TT	TT	-	TT	TT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000332	exon9	c.2134_2135del	p.712_712del	.	.	.
SCAND3	114821	broad.mit.edu	36	6	28651581	28651581	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052923	exon3	c.880delG	p.E294fs	.	.	.
RIMS1	22999	broad.mit.edu	36	6	72653496	72653496	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014989	exon1	c.49delC	p.P17fs	.	.	.
LRCH4	4034	broad.mit.edu	36	7	100018016	100018016	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002319	exon2	c.C223T	p.L75L	.	.	.
SRRT	51593	broad.mit.edu	36	7	100323831	100323831	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128852	exon19	c.G2443A	p.A815T	.	.	.
LRRC17	10234	broad.mit.edu	36	7	102361877	102361877	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005824	exon2	c.G281A	p.R94H	.	.	.
C7orf53	286006	broad.mit.edu	36	7	111912145	111912145	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134468	exon2	c.T38A	p.I13N	.	.	.
CTTNBP2	83992	broad.mit.edu	36	7	117205006	117205006	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033427	exon8	c.G2573A	p.S858N	.	.	.
SLC13A1	6561	broad.mit.edu	36	7	122556219	122556219	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022444	exon10	c.C1049T	p.T350I	.	.	.
CHRM2	1129	broad.mit.edu	36	7	136351486	136351486	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000739	exon4	c.C1334G	p.A445G	.	.	.
KIAA1549	57670	broad.mit.edu	36	7	138252878	138252878	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164665	exon2	c.G2034A	p.L678L	.	.	.
BRAF	673	broad.mit.edu	36	7	140099605	140099605	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004333	exon15	c.T1799A	p.V600E	 BRAF,pituitary,NS,Substitution - Missense,0 	.	.
TAS2R3	50831	broad.mit.edu	36	7	141110767	141110767	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016943	exon1	c.T340C	p.F114L	.	.	.
EPHB6	2051	broad.mit.edu	36	7	142272106	142272106	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004445	exon7	c.C426A	p.D142E	.	.	.
CLCN1	1180	broad.mit.edu	36	7	142759114	142759114	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000083	exon23	c.C2901T	p.A967A	.	.	.
CNTNAP2	26047	broad.mit.edu	36	7	147446159	147446159	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014141	exon16	c.C2400T	p.A800A	.	.	.
ZNF212	7988	broad.mit.edu	36	7	148581615	148581615	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012256	exon5	c.T664C	p.Y222H	.	.	.
GIMAP4	55303	broad.mit.edu	36	7	149900373	149900373	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018326	exon3	c.G282A	p.V94V	.	.	.
SLC4A2	6522	broad.mit.edu	36	7	150399800	150399800	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199694	exon14	c.C2241A	p.P747P	.	.	.
PTPRN2	5799	broad.mit.edu	36	7	157677833	157677833	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130843	exon5	c.G496A	p.A166T	.	.	.
MACC1	346389	broad.mit.edu	36	7	20165880	20165880	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182762	exon5	c.C629T	p.A210V	.	.	.
ABCB5	340273	broad.mit.edu	36	7	20749081	20749081	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178559	exon16	c.C1746T	p.R582R	.	.	.
ABCB5	340273	broad.mit.edu	36	7	20761655	20761655	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178559	exon19	c.C2322T	p.N774N	.	.	.
IL6	3569	broad.mit.edu	36	7	22733697	22733697	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000600	exon2	c.C129T	p.H43H	.	.	.
OSBPL3	26031	broad.mit.edu	36	7	24869684	24869684	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145321	exon8	c.G733A	p.V245I	.	.	.
NOD1	10392	broad.mit.edu	36	7	30453129	30453129	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006092	exon8	c.G2348A	p.C783Y	.	.	.
NOD1	10392	broad.mit.edu	36	7	30461378	30461378	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006092	exon5	c.A276C	p.Q92H	.	.	.
GARS	2617	broad.mit.edu	36	7	30623350	30623350	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002047	exon10	c.G1290A	p.R430R	.	.	.
FAM188B	84182	broad.mit.edu	36	7	30842823	30842823	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032222	exon7	c.G1157A	p.R386K	.	.	.
RP9	6100	broad.mit.edu	36	7	33102649	33102649	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203288	exon5	c.C448T	p.R150X	.	.	.
GLI3	2737	broad.mit.edu	36	7	42054680	42054680	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000168	exon5	c.G614A	p.R205H	.	.	.
HECW1	23072	broad.mit.edu	36	7	43514204	43514204	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015052	exon23	c.G3815A	p.R1272Q	.	.	.
ZMIZ2	83637	broad.mit.edu	36	7	44763184	44763184	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174929	exon3	c.G279A	p.A93A	.	.	.
RAMP3	10268	broad.mit.edu	36	7	45189379	45189379	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005856	exon3	c.A290G	p.H97R	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48283501	48283501	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152701	exon15	c.T3529C	p.S1177P	.	.	.
COBL	23242	broad.mit.edu	36	7	51171408	51171408	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015198	exon6	c.C898T	p.R300C	.	.	.
FSCN1	6624	broad.mit.edu	36	7	5611547	5611547	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003088	exon5	c.C1398T	p.G466G	.	.	.
AUTS2	26053	broad.mit.edu	36	7	69002378	69002378	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015570	exon2	c.G480A	p.Q160Q	.	.	.
FZD9	8326	broad.mit.edu	36	7	72487173	72487173	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003508	exon1	c.G900A	p.A300A	.	.	.
HSPB1	3315	broad.mit.edu	36	7	75771309	75771309	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001540	exon3	c.C501A	p.A167A	.	.	.
PTPN12	5782	broad.mit.edu	36	7	77103079	77103079	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001131009	exon14	c.C1729T	p.R577X	.	.	.
SEMA3A	10371	broad.mit.edu	36	7	83448617	83448617	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006080	exon14	c.T1608C	p.A536A	.	.	.
DLX6	1750	broad.mit.edu	36	7	96477181	96477181	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005222	exon3	c.C768T	p.D256D	.	.	.
TRRAP	8295	broad.mit.edu	36	7	98368857	98368857	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003496	exon27	c.G3910A	p.A1304T	.	.	.
ARPC1B	10095	broad.mit.edu	36	7	98823660	98823660	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005720	exon4	c.G232A	p.V78M	.	.	.
PTCD1	26024	broad.mit.edu	36	7	98865336	98865336	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015545	exon4	c.C624T	p.D208D	.	.	.
STAG3	10734	broad.mit.edu	36	7	99635855	99635855	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012447	exon17	c.C1738A	p.L580I	.	.	.
ANLN	54443	broad.mit.edu	36	7	36405467	36405467	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018685	exon3	c.427delA	p.K143fs	.	.	.
CCT6A	908	broad.mit.edu	36	7	56093565	56093565	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009186	exon6	c.607delT	p.F203fs	.	.	.
ABCB4	5244	broad.mit.edu	36	7	86885844	86885844	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018849	exon20	c.2423delA	p.N808fs	.	.	.
C7orf59	389541	broad.mit.edu	36	7	99589439	99589440	+	Frame_Shift_Del	DEL	AC	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	AC	AC	AC	-	AC	AC	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008395	exon4	c.216_217del	p.72_73del	.	.	.
LSM5	23658	broad.mit.edu	36	7	32495385	32495385	+	Splice_Site	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
HPVC1	3262	broad.mit.edu	36	7	54236911	54236912	+	Frame_Shift_Del	DEL	AC	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	AC	AC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
VPS13B	157680	broad.mit.edu	36	8	100901342	100901342	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152564	exon49	c.A8810G	p.Q2937R	.	.	.
YWHAZ	7534	broad.mit.edu	36	8	102005392	102005392	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135699	exon5	c.G645A	p.T215T	.	.	.
GRHL2	79977	broad.mit.edu	36	8	102655090	102655090	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024915	exon6	c.C753A	p.T251T	.	.	.
KLF10	7071	broad.mit.edu	36	8	103732560	103732560	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001032282	exon3	c.G1143A	p.T381T	.	.	.
CSMD3	114788	broad.mit.edu	36	8	114003082	114003082	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198123	exon10	c.G1583A	p.R528Q	.	.	.
TRPS1	7227	broad.mit.edu	36	8	116499763	116499763	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014112	exon6	c.G2794A	p.A932T	.	.	.
CTSB	1508	broad.mit.edu	36	8	11742737	11742737	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_147781	exon8	c.G536A	p.C179Y	.	.	.
SLC30A8	169026	broad.mit.edu	36	8	118228493	118228493	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173851	exon2	c.C191T	p.A64V	.	.	.
ZHX2	22882	broad.mit.edu	36	8	124034333	124034333	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014943	exon3	c.G1402A	p.E468K	.	.	.
ATAD2	29028	broad.mit.edu	36	8	124428655	124428655	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014109	exon16	c.C2070T	p.S690S	.	.	.
DLC1	10395	broad.mit.edu	36	8	13002501	13002501	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182643	exon9	c.G1716A	p.P572P	.	.	.
TG	7038	broad.mit.edu	36	8	133952880	133952880	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003235	exon4	c.C380T	p.A127V	.	.	.
PLEC	5339	broad.mit.edu	36	8	145081230	145081230	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201383	exon8	c.C774T	p.Y258Y	.	.	.
CPSF1	29894	broad.mit.edu	36	8	145592424	145592424	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013291	exon26	c.G2926A	p.A976T	.	.	.
COMMD5	28991	broad.mit.edu	36	8	146047049	146047049	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081004	exon2	c.A479G	p.D160G	.	.	.
DLGAP2	9228	broad.mit.edu	36	8	1485067	1485067	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004745	exon2	c.C801T	p.N267N	.	.	.
DLGAP2	9228	broad.mit.edu	36	8	1613946	1613946	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004745	exon9	c.C2208T	p.S736S	.	.	.
ARHGEF10	9639	broad.mit.edu	36	8	1841240	1841240	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014629	exon17	c.C1918A	p.R640R	.	.	.
ENTPD4	9583	broad.mit.edu	36	8	23346437	23346437	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004901	exon13	c.G1798A	p.A600T	.	.	.
NKX3-1	4824	broad.mit.edu	36	8	23594765	23594765	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006167	exon2	c.C619T	p.R207W	.	.	.
FZD3	7976	broad.mit.edu	36	8	28441227	28441227	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145866	exon4	c.T1031C	p.I344T	.	.	.
UNC5D	137970	broad.mit.edu	36	8	35526365	35526365	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080872	exon2	c.C117T	p.G39G	.	.	.
WHSC1L1	54904	broad.mit.edu	36	8	38303446	38303446	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017778	exon7	c.C1667T	p.T556M	.	.	.
ADAM2	2515	broad.mit.edu	36	8	39814819	39814819	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001464	exon1	c.C43T	p.R15W	.	.	.
SFRP1	6422	broad.mit.edu	36	8	41285436	41285436	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003012	exon1	c.G400A	p.E134K	.	.	.
NPBWR1	2831	broad.mit.edu	36	8	54015993	54015993	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005285	exon1	c.C973T	p.R325C	.	.	.
UBXN2B	137886	broad.mit.edu	36	8	59522515	59522515	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077619	exon8	c.C847T	p.R283W	.	.	.
EYA1	2138	broad.mit.edu	36	8	72373918	72373918	+	Silent	SNP	C	T	T	rs10098224	byCluster;byFrequency;byHapMap	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172060	exon7	c.G645A	p.T215T	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77779699	77779699	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024721	exon2	c.G821T	p.R274M	.	.	.
IMPA1	3612	broad.mit.edu	36	8	82755499	82755499	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144879	exon3	c.G138A	p.T46T	.	.	.
FAM82B	51115	broad.mit.edu	36	8	87561636	87561636	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016033	exon6	c.C627T	p.H209H	.	.	.
CNBD1	168975	broad.mit.edu	36	8	88435045	88435045	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173538	exon10	c.C1218T	p.S406S	.	.	.
DCAF4L2	138009	broad.mit.edu	36	8	88954556	88954556	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152418	exon1	c.C760T	p.R254C	.	.	.
MMP16	4325	broad.mit.edu	36	8	89200156	89200156	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005941	exon5	c.T760C	p.L254L	.	.	.
UQCRB	7381	broad.mit.edu	36	8	97312463	97312463	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006294	exon4	c.A332C	p.K111T	.	.	.
ZNF34	80778	broad.mit.edu	36	8	145970391	145970391	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030580	exon6	c.747delA	p.K249fs	.	.	.
PCM1	5108	broad.mit.edu	36	8	17841639	17841639	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006197	exon6	c.772delA	p.K258fs	.	.	.
KIAA1429	25962	broad.mit.edu	36	8	95577798	95577798	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015496	exon18	c.4317delA	p.K1439fs	.	.	.
TBC1D2	55357	broad.mit.edu	36	9	100010936	100010936	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018421	exon9	c.G1985A	p.R662H	.	.	.
MRPL50	54534	broad.mit.edu	36	9	103192654	103192654	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019051	exon2	c.A392G	p.N131S	.	.	.
OR13C3	138803	broad.mit.edu	36	9	106338503	106338503	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001961	exon1	c.G413A	p.G138E	.	.	.
FOXD4	2298	broad.mit.edu	36	9	106972	106972	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207305	exon1	c.C1148T	p.A383V	.	.	.
ZNF462	58499	broad.mit.edu	36	9	108727365	108727365	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021224	exon3	c.C1351T	p.R451X	.	.	.
ZNF462	58499	broad.mit.edu	36	9	108727655	108727655	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021224	exon3	c.A1641G	p.P547P	.	.	.
CTNNAL1	8727	broad.mit.edu	36	9	110801349	110801349	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003798	exon2	c.G150A	p.T50T	.	.	.
EPB41L4B	54566	broad.mit.edu	36	9	111055611	111055611	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018424	exon12	c.C1210T	p.R404X	.	.	.
MUSK	4593	broad.mit.edu	36	9	112602811	112602811	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166280	exon13	c.C2074T	p.R692C	.	.	.
KIAA0368	23392	broad.mit.edu	36	9	113216734	113216734	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080398	exon20	c.A2317G	p.M773V	.	.	.
SUSD1	64420	broad.mit.edu	36	9	113944428	113944428	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022486	exon5	c.T699C	p.H233H	.	.	.
KIAA1958	158405	broad.mit.edu	36	9	114447923	114447923	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133465	exon3	c.G1344T	p.K448N	.	.	.
FKBP15	23307	broad.mit.edu	36	9	114996219	114996219	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015258	exon10	c.G916A	p.D306N	.	.	.
FKBP15	23307	broad.mit.edu	36	9	114999051	114999051	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015258	exon9	c.C846T	p.F282F	.	.	.
TNC	3371	broad.mit.edu	36	9	116826229	116826229	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002160	exon27	c.C6339T	p.S2113S	.	.	.
ASTN2	23245	broad.mit.edu	36	9	118622767	118622767	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014010	exon11	c.G2004A	p.T668T	.	.	.
DBC1	1620	broad.mit.edu	36	9	120969421	120969421	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014618	exon8	c.G2048A	p.G683D	.	.	.
DBC1	1620	broad.mit.edu	36	9	121051172	121051172	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014618	exon3	c.C296T	p.P99L	.	.	.
CDK5RAP2	55755	broad.mit.edu	36	9	122217178	122217178	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018249	exon28	c.C4258T	p.R1420W	.	.	.
TTLL11	158135	broad.mit.edu	36	9	123791367	123791367	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001139442	exon4	c.G1467A	p.A489A	.	.	.
MAPKAP1	79109	broad.mit.edu	36	9	127361736	127361736	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001006620	exon5	c.G269A	p.R90Q	.	.	.
CIZ1	25792	broad.mit.edu	36	9	129987738	129987738	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001131015	exon5	c.G497T	p.G166V	.	.	.
ODF2	4957	broad.mit.edu	36	9	130302278	130302278	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153435	exon21	c.G2605A	p.A869T	.	.	.
SPTAN1	6709	broad.mit.edu	36	9	130409795	130409795	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195532	exon31	c.C4078T	p.R1360X	.	.	.
LRRC8A	56262	broad.mit.edu	36	9	130710195	130710195	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019594	exon3	c.G931A	p.A311T	.	.	.
C9orf106	414318	broad.mit.edu	36	9	131124140	131124140	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012715	exon2	c.G227A	p.R76H	.	.	.
FNBP1	23048	broad.mit.edu	36	9	131711022	131711022	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015033	exon12	c.A1263G	p.L421L	.	.	.
ABL1	25	broad.mit.edu	36	9	132749633	132749633	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005157	exon11	c.G2135A	p.R712H	.	.	.
PPAPDC3	84814	broad.mit.edu	36	9	133173322	133173322	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032728	exon2	c.C643T	p.R215C	.	.	.
BAT2L1	84726	broad.mit.edu	36	9	133353102	133353102	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013318	exon27	c.G6023A	p.S2008N	.	.	.
TSC1	7248	broad.mit.edu	36	9	134772011	134772011	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001162426	exon14	c.C1363T	p.L455L	.	.	.
SURF6	6838	broad.mit.edu	36	9	135188672	135188672	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006753	exon5	c.G940A	p.V314M	.	.	.
DBH	1621	broad.mit.edu	36	9	135498452	135498452	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000787	exon4	c.G841A	p.G281R	.	.	.
SARDH	1757	broad.mit.edu	36	9	135545463	135545463	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007101	exon16	c.T1929C	p.G643G	.	.	.
SARDH	1757	broad.mit.edu	36	9	135572347	135572347	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007101	exon8	c.A1072G	p.T358A	.	.	.
WDR5	11091	broad.mit.edu	36	9	135995663	135995663	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017588	exon3	c.A99G	p.P33P	.	.	.
FCN1	2219	broad.mit.edu	36	9	136941605	136941605	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002003	exon9	c.G841A	p.A281T	.	.	.
OLFM1	10439	broad.mit.edu	36	9	137121891	137121891	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014279	exon2	c.G126A	p.W42X	.	.	.
SEC16A	9919	broad.mit.edu	36	9	138490355	138490355	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014866	exon3	c.A1534G	p.T512A	.	.	.
FBXW5	54461	broad.mit.edu	36	9	138955282	138955282	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018998	exon9	c.C1620T	p.S540S	.	.	.
TUBB2C	10383	broad.mit.edu	36	9	139256875	139256875	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006088	exon4	c.C384T	p.D128D	.	.	.
NELF	26012	broad.mit.edu	36	9	139463894	139463894	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130970	exon14	c.A1404G	p.S468S	.	.	.
EHMT1	79813	broad.mit.edu	36	9	139758300	139758300	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024757	exon6	c.G1107A	p.A369A	.	.	.
FREM1	158326	broad.mit.edu	36	9	14838727	14838727	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144966	exon8	c.T1197C	p.P399P	.	.	.
SMARCA2	6595	broad.mit.edu	36	9	2019048	2019048	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139045	exon2	c.C26T	p.A9V	.	.	.
MLLT3	4300	broad.mit.edu	36	9	20403785	20403785	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004529	exon5	c.G1059A	p.P353P	.	.	.
KIAA0020	9933	broad.mit.edu	36	9	2814765	2814765	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014878	exon11	c.C1086T	p.H362H	.	.	.
UBE2R2	54926	broad.mit.edu	36	9	33807924	33807924	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017811	exon1	c.T169C	p.Y57H	.	.	.
KIF24	347240	broad.mit.edu	36	9	34247972	34247972	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194313	exon11	c.G1633T	p.E545X	.	.	.
UNC13B	10497	broad.mit.edu	36	9	35367554	35367554	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006377	exon15	c.C1678T	p.R560X	.	.	.
CCIN	881	broad.mit.edu	36	9	36160694	36160694	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005893	exon1	c.C1195T	p.R399W	.	.	.
FRMPD1	22844	broad.mit.edu	36	9	37735824	37735824	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014907	exon16	c.G3795T	p.E1265D	.	.	.
KDM4C	23081	broad.mit.edu	36	9	6870040	6870040	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146696	exon6	c.C724T	p.R242X	.	.	.
FXN	2395	broad.mit.edu	36	9	70869735	70869735	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000144	exon4	c.C446T	p.T149M	.	.	.
TJP2	9414	broad.mit.edu	36	9	71030096	71030096	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201629	exon6	c.C1009A	p.L337M	.	.	.
TJP2	9414	broad.mit.edu	36	9	71059064	71059064	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201629	exon21	c.G3086A	p.R1029H	.	.	.
ALDH1A1	216	broad.mit.edu	36	9	74730284	74730284	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000689	exon6	c.T569A	p.V190E	.	.	.
RORB	6096	broad.mit.edu	36	9	76476584	76476584	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006914	exon9	c.G1171T	p.A391S	.	.	.
TRPM6	140803	broad.mit.edu	36	9	76580628	76580628	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177310	exon24	c.G3379A	p.V1127I	.	.	.
TLE4	7091	broad.mit.edu	36	9	81511545	81511545	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007005	exon11	c.C847T	p.R283C	.	.	.
DAPK1	1612	broad.mit.edu	36	9	89454752	89454752	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004938	exon16	c.C1525A	p.R509R	.	.	.
C9orf79	286234	broad.mit.edu	36	9	89693151	89693151	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178828	exon4	c.A3929T	p.D1310V	.	.	.
ROR2	4920	broad.mit.edu	36	9	93527083	93527083	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004560	exon9	c.C1514T	p.A505V	.	.	.
IARS	3376	broad.mit.edu	36	9	94080341	94080341	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013417	exon8	c.C794T	p.A265V	.	.	.
SUSD3	203328	broad.mit.edu	36	9	94881618	94881618	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145006	exon4	c.C470T	p.T157M	 SUSD3,skin,NS,Substitution - coding silent,-1 	.	.
NINJ1	4814	broad.mit.edu	36	9	94927133	94927133	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004148	exon3	c.G337A	p.A113T	.	.	.
PHF2	5253	broad.mit.edu	36	9	95462489	95462489	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005392	exon12	c.C1524A	p.P508P	.	.	.
FAM22F	54754	broad.mit.edu	36	9	96121099	96121099	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017561	exon7	c.A1740G	p.G580G	.	.	.
C9orf3	84909	broad.mit.edu	36	9	96758026	96758026	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032823	exon7	c.C1483T	p.R495W	.	.	.
PTCH1	5727	broad.mit.edu	36	9	97269319	97269319	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083605	exon15	c.C2007T	p.Y669Y	.	.	.
CTSL2	1515	broad.mit.edu	36	9	98835081	98835081	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001333	exon8	c.G976A	p.A326T	.	.	.
CTSL2	1515	broad.mit.edu	36	9	98835151	98835151	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001333	exon8	c.C906A	p.S302R	.	.	.
COL5A1	1289	broad.mit.edu	36	9	136848728	136848728	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000093	exon53	c.4158delG	p.S1386fs	.	.	.
SNAPC4	6621	broad.mit.edu	36	9	138396306	138396306	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003086	exon17	c.2108delC	p.P703fs	.	.	.
AGTPBP1	23287	broad.mit.edu	36	9	87383760	87383760	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015239	exon24	c.3117delA	p.K1039fs	.	.	.
LOC57653	57653	broad.mit.edu	36	9	99176654	99176654	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020893	exon35	c.4741delC	p.P1581fs	.	.	.
ARMCX2	9823	broad.mit.edu	36	X	100797922	100797922	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177949	exon6	c.A1309G	p.I437V	.	.	.
TCEAL6	158931	broad.mit.edu	36	X	101282599	101282599	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001006938	exon3	c.T361C	p.S121P	.	.	.
IRS4	8471	broad.mit.edu	36	X	107864617	107864617	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003604	exon1	c.G1614T	p.Q538H	.	.	.
TMEM164	84187	broad.mit.edu	36	X	109133734	109133734	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032227	exon2	c.G76A	p.G26S	.	.	.
TRPC5	7224	broad.mit.edu	36	X	110906667	110906667	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012471	exon11	c.C2452T	p.P818S	.	.	.
ZCCHC16	340595	broad.mit.edu	36	X	111585514	111585514	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004308	exon3	c.C902T	p.P301L	.	.	.
ZBTB33	10009	broad.mit.edu	36	X	119272228	119272228	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006777	exon2	c.G930A	p.V310V	.	.	.
ZDHHC9	51114	broad.mit.edu	36	X	128773063	128773063	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016032	exon9	c.G881T	p.S294I	.	.	.
ARHGAP36	158763	broad.mit.edu	36	X	130048241	130048241	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144967	exon11	c.T1407C	p.D469D	.	.	.
DDX26B	203522	broad.mit.edu	36	X	134507088	134507088	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182540	exon3	c.C264T	p.L88L	.	.	.
GPR101	83550	broad.mit.edu	36	X	135941186	135941186	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_054021	exon1	c.C314T	p.T105M	.	.	.
MAGEC2	51438	broad.mit.edu	36	X	141118353	141118353	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016249	exon3	c.A1087G	p.S363G	.	.	.
GPR50	9248	broad.mit.edu	36	X	150099290	150099290	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004224	exon2	c.G577A	p.V193I	.	.	.
GABRE	2564	broad.mit.edu	36	X	150881622	150881622	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004961	exon4	c.C492T	p.H164H	.	.	.
IDH3G	3421	broad.mit.edu	36	X	152708882	152708882	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004135	exon4	c.C195T	p.I65I	.	.	.
HCFC1	3054	broad.mit.edu	36	X	152869602	152869602	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005334	exon23	c.G5559A	p.K1853K	.	.	.
BMX	660	broad.mit.edu	36	X	15437449	15437449	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203281	exon3	c.C215T	p.T72M	.	.	.
ACE2	59272	broad.mit.edu	36	X	15501471	15501471	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021804	exon12	c.A1481G	p.D494G	.	.	.
ACE2	59272	broad.mit.edu	36	X	15506329	15506329	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021804	exon10	c.C1101T	p.D367D	.	.	.
PHKA2	5256	broad.mit.edu	36	X	18853755	18853755	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000292	exon15	c.C1521T	p.T507T	.	.	.
TAB3	257397	broad.mit.edu	36	X	30762144	30762144	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152787	exon10	c.C1935T	p.S645S	.	.	.
FTHL17	53940	broad.mit.edu	36	X	30999793	30999793	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031894	exon1	c.G199A	p.A67T	.	.	.
BCOR	54880	broad.mit.edu	36	X	39818609	39818609	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001123383	exon4	c.C934T	p.Q312X	.	.	.
SLC9A7	84679	broad.mit.edu	36	X	46503188	46503188	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032591	exon1	c.T221C	p.L74P	.	.	.
KCND1	3750	broad.mit.edu	36	X	48710942	48710942	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004979	exon1	c.C681A	p.F227L	.	.	.
GPR173	54328	broad.mit.edu	36	X	53123540	53123540	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018969	exon2	c.A1012G	p.I338V	.	.	.
TSPYL2	64061	broad.mit.edu	36	X	53129002	53129002	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022117	exon1	c.G597T	p.K199N	.	.	.
SMC1A	8243	broad.mit.edu	36	X	53449012	53449012	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006306	exon12	c.G1948T	p.G650X	.	.	.
HUWE1	10075	broad.mit.edu	36	X	53606581	53606581	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031407	exon53	c.C7140T	p.D2380D	.	.	.
ZC3H12B	340554	broad.mit.edu	36	X	64625669	64625669	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010888	exon1	c.G263A	p.R88H	.	.	.
DGAT2L6	347516	broad.mit.edu	36	X	69340978	69340978	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198512	exon6	c.T746C	p.F249S	.	.	.
DLG3	1741	broad.mit.edu	36	X	69590346	69590346	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021120	exon8	c.G1280A	p.R427H	.	.	.
GJB1	2705	broad.mit.edu	36	X	70360980	70360980	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000166	exon2	c.C698T	p.S233L	.	.	.
CXCR3	2833	broad.mit.edu	36	X	70753882	70753882	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001504	exon2	c.C165T	p.F55F	.	.	.
FLJ44635	392490	broad.mit.edu	36	X	71296494	71296494	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207422	exon2	c.C90T	p.D30D	.	.	.
KIAA2022	340533	broad.mit.edu	36	X	73880425	73880425	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008537	exon3	c.C692T	p.A231V	.	.	.
ATP7A	538	broad.mit.edu	36	X	77151336	77151336	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000052	exon7	c.G1789A	p.V597M	.	.	.
POF1B	79983	broad.mit.edu	36	X	84501255	84501255	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024921	exon4	c.C394T	p.P132S	.	.	.
PABPC5	140886	broad.mit.edu	36	X	90577789	90577789	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080832	exon2	c.G557A	p.R186Q	.	.	.
NAP1L3	4675	broad.mit.edu	36	X	92814445	92814445	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004538	exon1	c.G515A	p.S172N	.	.	.
DIAPH2	1730	broad.mit.edu	36	X	96090612	96090612	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006729	exon15	c.G1532A	p.R511Q	.	.	.
SHROOM2	357	broad.mit.edu	36	X	9823764	9823764	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001649	exon4	c.G1816A	p.A606T	.	.	.
TSPAN6	7105	broad.mit.edu	36	X	99778276	99778276	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003270	exon1	c.C72T	p.Y24Y	.	.	.
SMARCA1	6594	broad.mit.edu	36	X	128432874	128432874	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003069	exon20	c.2553delA	p.K851fs	.	.	.
CCDC160	347475	broad.mit.edu	36	X	133206541	133206541	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001101357	exon2	c.45delT	p.P15fs	.	.	.
FLNA	2316	broad.mit.edu	36	X	153231122	153231122	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001456	exon46	c.7534delC	p.R2512fs	.	.	.
RBM10	8241	broad.mit.edu	36	X	46915411	46915413	+	In_Frame_Del	DEL	GGC	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	GGC	GGC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005676	exon4	c.242_244del	p.81_82del	.	.	.
SLC35A2	7355	broad.mit.edu	36	X	48647069	48647074	+	In_Frame_Del	DEL	GAGGCA	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	GAGGCA	GAGGCA	GAGGCA	-	GAGGCA	GAGGCA	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042498	exon4	c.1056_1061del	p.352_354del	.	.	.
RPS6KA6	27330	broad.mit.edu	36	X	83289719	83289719	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014496	exon4	c.327delA	p.K109fs	.	.	.
