Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID
WIPF3	644150	hgsc.bcm.edu	36	7	29882023	29882023	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
MAGI2	9863	hgsc.bcm.edu	36	7	77813252	77813252	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
SMURF1	57154	hgsc.bcm.edu	36	7	98492778	98492778	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
CTTNBP2	83992	hgsc.bcm.edu	36	7	117152523	117152523	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
TAS2R3	50831	hgsc.bcm.edu	36	7	141110936	141110936	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
MLL3	58508	hgsc.bcm.edu	36	7	151509575	151509575	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
MLL3	58508	hgsc.bcm.edu	36	7	151593142	151593142	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
SNPH	9751	hgsc.bcm.edu	36	20	1225811	1225811	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
PAK7	57144	hgsc.bcm.edu	36	20	9494783	9494783	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
ISM1	140862	hgsc.bcm.edu	36	20	13208457	13208457	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
SSTR4	6754	hgsc.bcm.edu	36	20	22964520	22964520	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
DNMT3B	1789	hgsc.bcm.edu	36	20	30836239	30836239	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
SRMS	6725	hgsc.bcm.edu	36	20	61642623	61642623	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
MYO18B	84700	hgsc.bcm.edu	36	22	24494210	24494210	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
MUC16	94025	hgsc.bcm.edu	36	19	8822961	8822961	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
MUC16	94025	hgsc.bcm.edu	36	19	8910153	8910153	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
ZNF254	9534	hgsc.bcm.edu	36	19	24101338	24101338	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
CCNE1	898	hgsc.bcm.edu	36	19	35006479	35006479	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
KIR2DL3	3804	hgsc.bcm.edu	36	19	59955724	59955724	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
ZSCAN4	201516	hgsc.bcm.edu	36	19	62881725	62881725	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
AGPAT5	55326	hgsc.bcm.edu	36	8	6592756	6592756	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
PSD3	23362	hgsc.bcm.edu	36	8	18458108	18458108	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
SULF1	23213	hgsc.bcm.edu	36	8	70698949	70698949	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
PTDSS1	9791	hgsc.bcm.edu	36	8	97381174	97381174	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
RIMS2	9699	hgsc.bcm.edu	36	8	104993524	104993524	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
TRPS1	7227	hgsc.bcm.edu	36	8	116495515	116495515	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
ARC	23237	hgsc.bcm.edu	36	8	143691855	143691855	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
ZNF644	84146	hgsc.bcm.edu	36	1	91179342	91179342	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
S1PR1	1901	hgsc.bcm.edu	36	1	101477919	101477919	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
FLG2	388698	hgsc.bcm.edu	36	1	150590681	150590681	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
ISG20L2	81875	hgsc.bcm.edu	36	1	154963387	154963387	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
C1orf129	80133	hgsc.bcm.edu	36	1	169219281	169219281	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
RGSL1	353299	hgsc.bcm.edu	36	1	180784562	180784562	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
EPRS	2058	hgsc.bcm.edu	36	1	218223219	218223219	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
MARK1	4139	hgsc.bcm.edu	36	1	218875425	218875425	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
NVL	4931	hgsc.bcm.edu	36	1	222558155	222558155	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
OBSCN	84033	hgsc.bcm.edu	36	1	226511217	226511217	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
PCNXL2	80003	hgsc.bcm.edu	36	1	231186712	231186712	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
KCNK1	3775	hgsc.bcm.edu	36	1	231869087	231869087	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
EXO1	9156	hgsc.bcm.edu	36	1	240102021	240102021	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
OR2T27	403239	hgsc.bcm.edu	36	1	246880439	246880439	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
SLC17A6	57084	hgsc.bcm.edu	36	11	22354787	22354787	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
QSER1	79832	hgsc.bcm.edu	36	11	32912004	32912004	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
FAT3	120114	hgsc.bcm.edu	36	11	92173918	92173918	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
NCAM1	4684	hgsc.bcm.edu	36	11	112581496	112581496	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
ZKSCAN3	80317	hgsc.bcm.edu	36	6	28435525	28435525	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
HLA-DPA1	3113	hgsc.bcm.edu	36	6	33144442	33144442	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
VTA1	51534	hgsc.bcm.edu	36	6	142510147	142510147	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
NLRP1	22861	hgsc.bcm.edu	36	17	5376988	5376988	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
MYH3	4621	hgsc.bcm.edu	36	17	10482221	10482221	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
ABCA9	10350	hgsc.bcm.edu	36	17	64558771	64558771	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
GCFC1	0	hgsc.bcm.edu	36	21	33056285	33056285	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
TIGD7	91151	hgsc.bcm.edu	36	16	3290316	3290316	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
HEATR3	55027	hgsc.bcm.edu	36	16	48666995	48666995	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
DPEP3	64180	hgsc.bcm.edu	36	16	66567590	66567590	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
HYDIN	54768	hgsc.bcm.edu	36	16	69425433	69425433	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
HYDIN	54768	hgsc.bcm.edu	36	16	69492550	69492550	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
CD226	10666	hgsc.bcm.edu	36	18	65713993	65713993	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
SOCS6	9306	hgsc.bcm.edu	36	18	66143906	66143906	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
CTNNB1	1499	hgsc.bcm.edu	36	3	41241108	41241108	+	Missense_Mutation	SNP	G	G	T	rs28931589	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
CCR3	1232	hgsc.bcm.edu	36	3	46281820	46281820	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
PLXNB1	5364	hgsc.bcm.edu	36	3	48431359	48431359	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
CD86	942	hgsc.bcm.edu	36	3	123307874	123307874	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
UROC1	131669	hgsc.bcm.edu	36	3	127709314	127709314	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
TRIM42	287015	hgsc.bcm.edu	36	3	141889681	141889681	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
PLSCR4	57088	hgsc.bcm.edu	36	3	147397150	147397150	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
PIK3CA	5290	hgsc.bcm.edu	36	3	180418766	180418766	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
PIK3CA	5290	hgsc.bcm.edu	36	3	180418777	180418777	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
ZNF639	51193	hgsc.bcm.edu	36	3	180528822	180528822	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
CACNA2D4	93589	hgsc.bcm.edu	36	12	1854093	1854093	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
KCNA5	3741	hgsc.bcm.edu	36	12	5024568	5024568	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
KRAS	3845	hgsc.bcm.edu	36	12	25289552	25289552	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
MLL2	9757	hgsc.bcm.edu	36	12	47724309	47724309	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
LGR5	8549	hgsc.bcm.edu	36	12	70264198	70264198	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
IFT81	28981	hgsc.bcm.edu	36	12	109065707	109065707	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
DISP2	85455	hgsc.bcm.edu	36	15	38448789	38448789	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
APH1B	83464	hgsc.bcm.edu	36	15	61358526	61358526	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
KDM6A	7403	hgsc.bcm.edu	36	X	44814086	44814086	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
SYP	6855	hgsc.bcm.edu	36	X	48936734	48936734	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
NOX1	27035	hgsc.bcm.edu	36	X	99991454	99991454	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
H2BFWT	158983	hgsc.bcm.edu	36	X	103154763	103154763	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
TBC1D8B	54885	hgsc.bcm.edu	36	X	105950874	105950874	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
STAP1	26228	hgsc.bcm.edu	36	4	68129749	68129749	+	Silent	SNP	T	T	G	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
SLC25A31	83447	hgsc.bcm.edu	36	4	128871266	128871266	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
PALLD	23022	hgsc.bcm.edu	36	4	170061529	170061529	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
ADAM29	11086	hgsc.bcm.edu	36	4	176135488	176135488	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
GMCL1	64395	hgsc.bcm.edu	36	2	69935490	69935490	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
DNAH6	1768	hgsc.bcm.edu	36	2	84780259	84780259	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
NXPH2	11249	hgsc.bcm.edu	36	2	139145337	139145337	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
LRP1B	53353	hgsc.bcm.edu	36	2	140969612	140969612	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
SLC38A11	151258	hgsc.bcm.edu	36	2	165504213	165504213	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
LRP2	4036	hgsc.bcm.edu	36	2	169717636	169717636	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
ZNF804A	91752	hgsc.bcm.edu	36	2	185511058	185511058	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
FAM171B	165215	hgsc.bcm.edu	36	2	187335568	187335568	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
WDR75	84128	hgsc.bcm.edu	36	2	190048276	190048276	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
FAM75D1	0	hgsc.bcm.edu	36	9	83796515	83796515	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
ZDHHC12	84885	hgsc.bcm.edu	36	9	130523388	130523388	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
SPATA13	221178	hgsc.bcm.edu	36	13	23766945	23766945	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
MTUS2	0	hgsc.bcm.edu	36	13	28975281	28975281	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
FRY	10129	hgsc.bcm.edu	36	13	31666298	31666298	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
RB1	5925	hgsc.bcm.edu	36	13	47937190	47937190	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
SLITRK6	84189	hgsc.bcm.edu	36	13	85267452	85267452	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
COL4A2	1284	hgsc.bcm.edu	36	13	109956800	109956800	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
PTEN	5728	hgsc.bcm.edu	36	10	89682879	89682879	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
PTEN	5728	hgsc.bcm.edu	36	10	89710680	89710680	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
PLCE1	51196	hgsc.bcm.edu	36	10	96043366	96043366	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
LOXL4	84171	hgsc.bcm.edu	36	10	100012606	100012606	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
ABCC2	1244	hgsc.bcm.edu	36	10	101568632	101568632	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
PHF15	23338	hgsc.bcm.edu	36	5	133942275	133942275	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
PCDHA13	56136	hgsc.bcm.edu	36	5	140243822	140243822	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
PCDHB3	56132	hgsc.bcm.edu	36	5	140461006	140461006	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
PCDHB6	56130	hgsc.bcm.edu	36	5	140511357	140511357	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
PCDHB7	56129	hgsc.bcm.edu	36	5	140533998	140533998	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
SPINK6	404203	hgsc.bcm.edu	36	5	147573744	147573744	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
ITK	3702	hgsc.bcm.edu	36	5	156540605	156540605	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
ATP10B	23120	hgsc.bcm.edu	36	5	159958512	159958512	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
COL18A1	80781	hgsc.bcm.edu	36	21	45735657	45735657	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
MUC4	4585	hgsc.bcm.edu	36	3	196998195	196998242	+	In_Frame_Del	DEL	TGGTGTCACCTGTGGATGCTGAGGAAGGGCTAGTGACAGGAAGAGGCA	TGGTGTCACCTGTGGATGCTGAGGAAGGGCTAGTGACAGGAAGAGGCA	-	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	TGGTGTCACCTGTGGATGCTGAGGAAGGGCTAGTGACAGGAAGAGGCA	TGGTGTCACCTGTGGATGCTGAGGAAGGGCTAGTGACAGGAAGAGGCA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
MUC4	4585	hgsc.bcm.edu	36	3	196999393	196999440	+	In_Frame_Del	DEL	GGTGGTGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGA	GGTGGTGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGA	-	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	GGTGGTGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGA	GGTGGTGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
MUC4	4585	hgsc.bcm.edu	36	3	196999762	196999809	+	In_Frame_Del	DEL	GGTGACAGGAAGAGGGGTGGTGTGACCTGTGGATACTGAGGAAGGGCT	GGTGACAGGAAGAGGGGTGGTGTGACCTGTGGATACTGAGGAAGGGCT	-	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	GGTGACAGGAAGAGGGGTGGTGTGACCTGTGGATACTGAGGAAGGGCT	GGTGACAGGAAGAGGGGTGGTGTGACCTGTGGATACTGAGGAAGGGCT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
CRIPAK	285464	hgsc.bcm.edu	36	4	1378594	1378622	+	Frame_Shift_Del	DEL	CACGTGCCCATGTGGAGTGCCCGCCTGCT	CACGTGCCCATGTGGAGTGCCCGCCTGCT	-	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	CACGTGCCCATGTGGAGTGCCCGCCTGCT	CACGTGCCCATGTGGAGTGCCCGCCTGCT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
EYS	346007	hgsc.bcm.edu	36	6	65074937	65074938	+	Frame_Shift_Del	DEL	GA	GA	-	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	GA	GA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
ALDH3B1	221	hgsc.bcm.edu	36	11	67551954	67551955	+	Frame_Shift_Ins	INS	-	-	C	rs11436139	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
KRTAP4-5	85289	hgsc.bcm.edu	36	17	36559326	36559340	+	In_Frame_Del	DEL	TGGATTCACAGCAAT	TGGATTCACAGCAAT	-	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	TGGATTCACAGCAAT	TGGATTCACAGCAAT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
OR7E24	26648	hgsc.bcm.edu	36	19	9222741	9222741	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
ZNF568	374900	hgsc.bcm.edu	36	19	42132586	42132586	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
RHBDD3	25807	hgsc.bcm.edu	36	22	27991544	27991546	+	In_Frame_Del	DEL	CAG	CAG	-	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	CAG	CAG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
OFD1	8481	hgsc.bcm.edu	36	X	13674867	13674867	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-CM-4747-01A-01D-1408-10	TCGA-CM-4747-10A-01D-1408-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	09a186e7-5839-4087-98f4-c83fe2f79f76	5f83a307-810b-4e93-91d6-8983420d8e54
