Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID
RADIL	55698	hgsc.bcm.edu	36	7	4883967	4883967	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
WIPI2	26100	hgsc.bcm.edu	36	7	5205799	5205799	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
SNX13	23161	hgsc.bcm.edu	36	7	17821090	17821090	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
HOXA6	3203	hgsc.bcm.edu	36	7	27153877	27153877	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
C7orf16	10842	hgsc.bcm.edu	36	7	31713362	31713362	+	Silent	SNP	C	C	T	rs2072409	byCluster;byFrequency;byHapMap	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
HERPUD2	64224	hgsc.bcm.edu	36	7	35676413	35676413	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
FIGNL1	63979	hgsc.bcm.edu	36	7	50481162	50481162	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
KCTD7	154881	hgsc.bcm.edu	36	7	65741313	65741313	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
DTX2	113878	hgsc.bcm.edu	36	7	75949844	75949844	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
GRM3	2913	hgsc.bcm.edu	36	7	86306253	86306253	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
KRIT1	889	hgsc.bcm.edu	36	7	91681221	91681221	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PPP1R9A	55607	hgsc.bcm.edu	36	7	94735881	94735881	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
TRRAP	8295	hgsc.bcm.edu	36	7	98353157	98353157	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ZNF789	285989	hgsc.bcm.edu	36	7	98922559	98922559	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
C7orf43	55262	hgsc.bcm.edu	36	7	99593432	99593432	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
RELN	5649	hgsc.bcm.edu	36	7	102911424	102911424	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
SRPK2	6733	hgsc.bcm.edu	36	7	104574202	104574202	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PRKAR2B	5577	hgsc.bcm.edu	36	7	106574069	106574069	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
SLC26A4	5172	hgsc.bcm.edu	36	7	107129630	107129630	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
TMEM140	55281	hgsc.bcm.edu	36	7	134500121	134500121	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ZC3HAV1	56829	hgsc.bcm.edu	36	7	138419275	138419275	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
HIPK2	28996	hgsc.bcm.edu	36	7	138935822	138935822	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
BRAF	673	hgsc.bcm.edu	36	7	140099591	140099591	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
BRAF	673	hgsc.bcm.edu	36	7	140099619	140099619	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
BRAF	673	hgsc.bcm.edu	36	7	140127911	140127911	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
BRAF	673	hgsc.bcm.edu	36	7	140127945	140127945	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
KEL	3792	hgsc.bcm.edu	36	7	142351604	142351604	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
OR2A5	393046	hgsc.bcm.edu	36	7	143378728	143378728	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
SIRPD	128646	hgsc.bcm.edu	36	20	1480452	1480452	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
TGM3	7053	hgsc.bcm.edu	36	20	2241605	2241605	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
C20orf26	26074	hgsc.bcm.edu	36	20	20180313	20180313	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CEP250	11190	hgsc.bcm.edu	36	20	33555271	33555271	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
TGM2	7052	hgsc.bcm.edu	36	20	36212778	36212778	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PTPRT	11122	hgsc.bcm.edu	36	20	40310742	40310742	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PTPRT	11122	hgsc.bcm.edu	36	20	40534333	40534333	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
SRSF6	0	hgsc.bcm.edu	36	20	41522138	41522138	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ZNF334	55713	hgsc.bcm.edu	36	20	44563872	44563872	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
OSBPL2	9885	hgsc.bcm.edu	36	20	60292516	60292516	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
COL20A1	57642	hgsc.bcm.edu	36	20	61427289	61427289	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
KCNQ2	3785	hgsc.bcm.edu	36	20	61546576	61546576	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CHEK2	11200	hgsc.bcm.edu	36	22	27421841	27421841	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
NF2	4771	hgsc.bcm.edu	36	22	28399294	28399294	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
XRCC6	2547	hgsc.bcm.edu	36	22	40379603	40379603	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PACSIN2	11252	hgsc.bcm.edu	36	22	41597376	41597376	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PKDREJ	10343	hgsc.bcm.edu	36	22	45032793	45032793	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
TUBGCP6	85378	hgsc.bcm.edu	36	22	49000210	49000210	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CLEC14A	161198	hgsc.bcm.edu	36	14	37794219	37794219	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
SEC23A	10484	hgsc.bcm.edu	36	14	38584205	38584205	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
EXOC5	10640	hgsc.bcm.edu	36	14	56768186	56768186	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
TC2N	123036	hgsc.bcm.edu	36	14	91348597	91348597	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CDC42BPB	9578	hgsc.bcm.edu	36	14	102475983	102475983	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
STK11	6794	hgsc.bcm.edu	36	19	1172974	1172974	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
S1PR2	9294	hgsc.bcm.edu	36	19	10196095	10196095	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
SLC44A2	57153	hgsc.bcm.edu	36	19	10607124	10607124	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CPAMD8	27151	hgsc.bcm.edu	36	19	16893769	16893769	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CPAMD8	27151	hgsc.bcm.edu	36	19	16900020	16900020	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
C19orf2	8725	hgsc.bcm.edu	36	19	35169155	35169155	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CEBPA	1050	hgsc.bcm.edu	36	19	38484230	38484230	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PDCD2L	84306	hgsc.bcm.edu	36	19	39592050	39592050	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
MEGF8	1954	hgsc.bcm.edu	36	19	47549494	47549494	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ZNF235	9310	hgsc.bcm.edu	36	19	49483755	49483755	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
HIF3A	64344	hgsc.bcm.edu	36	19	51499098	51499098	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PRKD2	25865	hgsc.bcm.edu	36	19	51892837	51892837	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
GRLF1	2909	hgsc.bcm.edu	36	19	52115128	52115128	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
FUT1	2523	hgsc.bcm.edu	36	19	53945898	53945898	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PLEKHA4	57664	hgsc.bcm.edu	36	19	54036375	54036375	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ZNF473	25888	hgsc.bcm.edu	36	19	55234261	55234261	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
MYBPC2	4606	hgsc.bcm.edu	36	19	55650352	55650352	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ZNF28	7576	hgsc.bcm.edu	36	19	57995195	57995195	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PTPRH	5794	hgsc.bcm.edu	36	19	60408623	60408623	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ZNF547	284306	hgsc.bcm.edu	36	19	62580927	62580927	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ZNF549	256051	hgsc.bcm.edu	36	19	62742008	62742008	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ESCO2	157570	hgsc.bcm.edu	36	8	27706168	27706168	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
FZD3	8326	hgsc.bcm.edu	36	8	28441485	28441485	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PRKDC	5591	hgsc.bcm.edu	36	8	48929315	48929315	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PRKDC	5591	hgsc.bcm.edu	36	8	48934866	48934866	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
UBXN2B	137886	hgsc.bcm.edu	36	8	59514809	59514809	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
MMP16	4325	hgsc.bcm.edu	36	8	89198032	89198032	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
VPS13B	157680	hgsc.bcm.edu	36	8	100548937	100548937	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
RSPO2	340419	hgsc.bcm.edu	36	8	109042104	109042104	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
NOV	6134	hgsc.bcm.edu	36	8	120499693	120499693	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PHF20L1	51105	hgsc.bcm.edu	36	8	133876184	133876184	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
SLA	51091	hgsc.bcm.edu	36	8	134126431	134126431	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ZFAT	57623	hgsc.bcm.edu	36	8	135684101	135684101	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
SKI	6497	hgsc.bcm.edu	36	1	2225645	2225645	+	Missense_Mutation	SNP	G	G	A	rs61735580	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CLCN6	1185	hgsc.bcm.edu	36	1	11809831	11809831	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PIGV	55650	hgsc.bcm.edu	36	1	26993844	26993844	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
TAF12	6883	hgsc.bcm.edu	36	1	28804554	28804554	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CSMD2	114784	hgsc.bcm.edu	36	1	33849273	33849273	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CSMD2	114784	hgsc.bcm.edu	36	1	34327187	34327187	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
MAP7D1	55700	hgsc.bcm.edu	36	1	36418125	36418125	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
NFYC	4802	hgsc.bcm.edu	36	1	40996509	40996509	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PTPRF	5792	hgsc.bcm.edu	36	1	43858402	43858402	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
POMGNT1	55624	hgsc.bcm.edu	36	1	46431602	46431602	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
FAF1	11124	hgsc.bcm.edu	36	1	50777923	50777923	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CACHD1	57685	hgsc.bcm.edu	36	1	64919544	64919544	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
C1orf173	127254	hgsc.bcm.edu	36	1	74810870	74810870	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ABCA4	24	hgsc.bcm.edu	36	1	94294785	94294785	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
DPYD	1806	hgsc.bcm.edu	36	1	97929869	97929869	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ATXN7L2	127002	hgsc.bcm.edu	36	1	109831162	109831162	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
MOV10	4343	hgsc.bcm.edu	36	1	113040590	113040590	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
TRIM45	80263	hgsc.bcm.edu	36	1	117462240	117462240	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
HMGCS2	3158	hgsc.bcm.edu	36	1	120108341	120108341	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
FMO5	2330	hgsc.bcm.edu	36	1	145139682	145139682	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
SV2A	9900	hgsc.bcm.edu	36	1	148151547	148151547	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CREB3L4	148327	hgsc.bcm.edu	36	1	152207769	152207769	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ISG20L2	81875	hgsc.bcm.edu	36	1	154963802	154963802	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ARHGEF11	9826	hgsc.bcm.edu	36	1	155176010	155176010	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
OR6N1	128372	hgsc.bcm.edu	36	1	157002735	157002735	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CRP	140913	hgsc.bcm.edu	36	1	157950257	157950257	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PVRL4	81607	hgsc.bcm.edu	36	1	159314046	159314046	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
RCSD1	92241	hgsc.bcm.edu	36	1	165933142	165933142	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PIGC	5279	hgsc.bcm.edu	36	1	170678312	170678312	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
LAMC1	3915	hgsc.bcm.edu	36	1	181366167	181366167	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
GLT25D2	23127	hgsc.bcm.edu	36	1	182210942	182210942	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
HMCN1	83872	hgsc.bcm.edu	36	1	184348582	184348582	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PTGS2	5743	hgsc.bcm.edu	36	1	184911128	184911128	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
GPR25	2848	hgsc.bcm.edu	36	1	199109766	199109766	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
KIF21B	23046	hgsc.bcm.edu	36	1	199227445	199227445	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
MDM4	4194	hgsc.bcm.edu	36	1	202782578	202782578	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
TMCC2	9911	hgsc.bcm.edu	36	1	203477331	203477331	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
LPGAT1	9926	hgsc.bcm.edu	36	1	210023255	210023255	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
USH2A	7399	hgsc.bcm.edu	36	1	214128935	214128935	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
DNAH14	127602	hgsc.bcm.edu	36	1	223221848	223221848	+	Silent	SNP	G	G	A	rs61732752	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CDC42BPA	8476	hgsc.bcm.edu	36	1	225374187	225374187	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
WNT9A	7483	hgsc.bcm.edu	36	1	226176099	226176099	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ARID4B	51742	hgsc.bcm.edu	36	1	233412054	233412054	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CHRM3	1131	hgsc.bcm.edu	36	1	238137856	238137856	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
NLRP3	114548	hgsc.bcm.edu	36	1	245654347	245654347	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
OR2L2	26246	hgsc.bcm.edu	36	1	246268505	246268505	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
OR2M3	127062	hgsc.bcm.edu	36	1	246433390	246433390	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
OR2T33	391195	hgsc.bcm.edu	36	1	246503495	246503495	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
IFITM3	10410	hgsc.bcm.edu	36	11	310765	310765	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ANO9	338440	hgsc.bcm.edu	36	11	418521	418521	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ANO9	338440	hgsc.bcm.edu	36	11	423874	423874	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
OR8H3	390152	hgsc.bcm.edu	36	11	55646946	55646946	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
GANAB	23193	hgsc.bcm.edu	36	11	62163677	62163677	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
KIAA1377	57562	hgsc.bcm.edu	36	11	101339573	101339573	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
GRIA4	2893	hgsc.bcm.edu	36	11	105263461	105263461	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ATM	472	hgsc.bcm.edu	36	11	107683873	107683873	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ATM	472	hgsc.bcm.edu	36	11	107721711	107721711	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
MLL	4297	hgsc.bcm.edu	36	11	117878487	117878487	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
EXOC2	55770	hgsc.bcm.edu	36	6	578066	578066	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
HIVEP1	3096	hgsc.bcm.edu	36	6	12232176	12232176	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
RANBP9	10048	hgsc.bcm.edu	36	6	13733874	13733874	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ALDH5A1	7915	hgsc.bcm.edu	36	6	24623377	24623377	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ZBTB9	221504	hgsc.bcm.edu	36	6	33531671	33531671	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
FGD2	619477	hgsc.bcm.edu	36	6	37084690	37084690	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
KCNK16	83795	hgsc.bcm.edu	36	6	39390830	39390830	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
FRS3	10817	hgsc.bcm.edu	36	6	41848568	41848568	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
TBCC	6903	hgsc.bcm.edu	36	6	42821492	42821492	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
RUNX2	860	hgsc.bcm.edu	36	6	45622657	45622657	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PKHD1	5314	hgsc.bcm.edu	36	6	51840794	51840794	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
C6orf150	115004	hgsc.bcm.edu	36	6	74191797	74191797	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PHIP	55023	hgsc.bcm.edu	36	6	79721271	79721271	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
MDN1	23195	hgsc.bcm.edu	36	6	90437399	90437399	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
BACH2	60468	hgsc.bcm.edu	36	6	90717350	90717350	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
EPHA7	2045	hgsc.bcm.edu	36	6	94177077	94177077	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
GRIK2	2901	hgsc.bcm.edu	36	6	102590050	102590050	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
BEND3	57673	hgsc.bcm.edu	36	6	107498431	107498431	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PDSS2	57107	hgsc.bcm.edu	36	6	107673478	107673478	+	Silent	SNP	T	T	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PTPRK	5796	hgsc.bcm.edu	36	6	128339554	128339554	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ARHGAP18	93663	hgsc.bcm.edu	36	6	129946930	129946930	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
EPB41L2	2037	hgsc.bcm.edu	36	6	131232578	131232578	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
MAP3K4	4216	hgsc.bcm.edu	36	6	161430420	161430420	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
MLLT4	4301	hgsc.bcm.edu	36	6	168094982	168094982	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
RNMTL1	55178	hgsc.bcm.edu	36	17	632587	632587	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
RAP1GAP2	0	hgsc.bcm.edu	36	17	2868116	2868116	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
TP53	7157	hgsc.bcm.edu	36	17	7514726	7514726	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
TP53	7157	hgsc.bcm.edu	36	17	7517819	7517819	+	Missense_Mutation	SNP	G	G	A	rs28934574	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
TP53	7157	hgsc.bcm.edu	36	17	7518308	7518308	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
TP53	7157	hgsc.bcm.edu	36	17	7519158	7519158	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
TP53	7157	hgsc.bcm.edu	36	17	7520238	7520238	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PFAS	5198	hgsc.bcm.edu	36	17	8097999	8097999	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
SMCR7	125170	hgsc.bcm.edu	36	17	18108531	18108531	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
SPECC1	92521	hgsc.bcm.edu	36	17	20048347	20048347	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
NLK	51701	hgsc.bcm.edu	36	17	23394165	23394165	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
NF1	4763	hgsc.bcm.edu	36	17	26701420	26701420	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
NF1	4763	hgsc.bcm.edu	36	17	26711705	26711705	+	Silent	SNP	A	A	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ERBB2	2064	hgsc.bcm.edu	36	17	35135143	35135143	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
KRT12	3859	hgsc.bcm.edu	36	17	36276896	36276896	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
KRTAP4-1	85285	hgsc.bcm.edu	36	17	36594265	36594265	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
AOC3	8639	hgsc.bcm.edu	36	17	38258187	38258187	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
NFE2L1	4779	hgsc.bcm.edu	36	17	43491272	43491272	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ANKFN1	162282	hgsc.bcm.edu	36	17	51806991	51806991	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
C17orf71	55181	hgsc.bcm.edu	36	17	54643792	54643792	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
AXIN2	8313	hgsc.bcm.edu	36	17	60968093	60968093	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
BPTF	2186	hgsc.bcm.edu	36	17	63338211	63338211	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
LLGL2	3993	hgsc.bcm.edu	36	17	71066945	71066945	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
TK1	7083	hgsc.bcm.edu	36	17	73690323	73690323	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
LTN1	0	hgsc.bcm.edu	36	21	29225360	29225360	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
TIAM1	7074	hgsc.bcm.edu	36	21	31560652	31560652	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
RUNX1	861	hgsc.bcm.edu	36	21	35153661	35153661	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
RRP1B	23076	hgsc.bcm.edu	36	21	43904015	43904015	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
TRAPPC10	7109	hgsc.bcm.edu	36	21	44336308	44336308	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
TSC2	7249	hgsc.bcm.edu	36	16	2053027	2053027	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
THOC6	79228	hgsc.bcm.edu	36	16	3016080	3016080	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
MEFV	4210	hgsc.bcm.edu	36	16	3233510	3233510	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CREBBP	1387	hgsc.bcm.edu	36	16	3760775	3760775	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
GP2	2813	hgsc.bcm.edu	36	16	20243030	20243030	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
DNAH3	55567	hgsc.bcm.edu	36	16	21000513	21000513	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ZKSCAN2	342357	hgsc.bcm.edu	36	16	25165606	25165606	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
KIAA0556	23247	hgsc.bcm.edu	36	16	27627703	27627703	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CDH1	51343	hgsc.bcm.edu	36	16	67393084	67393084	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CDH1	51343	hgsc.bcm.edu	36	16	67404736	67404736	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CLUL1	27098	hgsc.bcm.edu	36	18	634984	634984	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
C18orf19	125228	hgsc.bcm.edu	36	18	13671833	13671833	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
MC5R	4161	hgsc.bcm.edu	36	18	13816276	13816276	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
LAMA3	3910	hgsc.bcm.edu	36	18	19692762	19692762	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
SMAD4	4089	hgsc.bcm.edu	36	18	46829187	46829187	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
SMAD4	4089	hgsc.bcm.edu	36	18	46829670	46829670	+	Silent	SNP	A	A	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ATP8B1	5205	hgsc.bcm.edu	36	18	53503330	53503330	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ZNF532	55205	hgsc.bcm.edu	36	18	54752764	54752764	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CDH7	28513	hgsc.bcm.edu	36	18	61681086	61681086	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CNTN6	27255	hgsc.bcm.edu	36	3	1244641	1244641	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CAMK1	8536	hgsc.bcm.edu	36	3	9777434	9777434	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
VHL	7428	hgsc.bcm.edu	36	3	10166496	10166496	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
VHL	7428	hgsc.bcm.edu	36	3	10166566	10166566	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
VHL	7428	hgsc.bcm.edu	36	3	10166647	10166647	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
RAB5A	5868	hgsc.bcm.edu	36	3	19992563	19992563	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
DCLK3	85443	hgsc.bcm.edu	36	3	36753890	36753890	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
MLH1	4292	hgsc.bcm.edu	36	3	37056686	37056686	+	Missense_Mutation	SNP	C	C	T	rs63751703	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
DLEC1	9940	hgsc.bcm.edu	36	3	38076319	38076319	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CTNNB1	1499	hgsc.bcm.edu	36	3	41241076	41241076	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CTNNB1	1499	hgsc.bcm.edu	36	3	41241201	41241201	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CTNNB1	1499	hgsc.bcm.edu	36	3	41241927	41241927	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
TRAK1	22906	hgsc.bcm.edu	36	3	42219104	42219104	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CCR9	10803	hgsc.bcm.edu	36	3	45918065	45918065	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
UBA3	9039	hgsc.bcm.edu	36	3	69193967	69193967	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
MITF	4286	hgsc.bcm.edu	36	3	70096796	70096796	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
OR5H15	403274	hgsc.bcm.edu	36	3	99370997	99370997	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CLDND1	56650	hgsc.bcm.edu	36	3	99718362	99718362	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CD200R1	131450	hgsc.bcm.edu	36	3	114131013	114131013	+	Silent	SNP	T	T	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ADCY5	111	hgsc.bcm.edu	36	3	124491421	124491421	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ADCY5	111	hgsc.bcm.edu	36	3	124492812	124492812	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
KLF15	28999	hgsc.bcm.edu	36	3	127554210	127554210	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
FAM194A	0	hgsc.bcm.edu	36	3	151867431	151867431	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
MBNL1	4154	hgsc.bcm.edu	36	3	153658662	153658662	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
SLITRK3	22865	hgsc.bcm.edu	36	3	166391031	166391031	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PIK3CA	5290	hgsc.bcm.edu	36	3	180404234	180404234	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PIK3CA	5290	hgsc.bcm.edu	36	3	180434596	180434596	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PIK3CA	5290	hgsc.bcm.edu	36	3	180434744	180434744	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
DVL3	1857	hgsc.bcm.edu	36	3	185365641	185365641	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
FBXO45	200933	hgsc.bcm.edu	36	3	197795429	197795429	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
NECAP1	25977	hgsc.bcm.edu	36	12	8136905	8136905	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
LRP6	4040	hgsc.bcm.edu	36	12	12193353	12193353	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PIK3C2G	5288	hgsc.bcm.edu	36	12	18468200	18468200	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CAPZA3	93661	hgsc.bcm.edu	36	12	18782587	18782587	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PLEKHA5	54477	hgsc.bcm.edu	36	12	19410171	19410171	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
KIAA0528	9847	hgsc.bcm.edu	36	12	22513986	22513986	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
IFLTD1	160492	hgsc.bcm.edu	36	12	25590734	25590734	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
IPO8	10526	hgsc.bcm.edu	36	12	30683784	30683784	+	Silent	SNP	A	A	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CCNT1	904	hgsc.bcm.edu	36	12	47373171	47373171	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
DDX23	9416	hgsc.bcm.edu	36	12	47525735	47525735	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
KRT73	319101	hgsc.bcm.edu	36	12	51293741	51293741	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
KRT78	196374	hgsc.bcm.edu	36	12	51526331	51526331	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
HOXC5	3222	hgsc.bcm.edu	36	12	52713367	52713367	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ERBB3	2065	hgsc.bcm.edu	36	12	54773434	54773434	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ERBB3	2065	hgsc.bcm.edu	36	12	54780231	54780231	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PIP4K2C	79837	hgsc.bcm.edu	36	12	56274142	56274142	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
TRHDE	29953	hgsc.bcm.edu	36	12	70953418	70953418	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ACTR6	64431	hgsc.bcm.edu	36	12	99136383	99136383	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
STAB2	55576	hgsc.bcm.edu	36	12	102679210	102679210	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
NT5DC3	51559	hgsc.bcm.edu	36	12	102695800	102695800	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
RIC8B	55188	hgsc.bcm.edu	36	12	105732884	105732884	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CUX2	23316	hgsc.bcm.edu	36	12	110264214	110264214	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
RAB35	11021	hgsc.bcm.edu	36	12	119021289	119021289	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
SBNO1	55206	hgsc.bcm.edu	36	12	122376074	122376074	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
DDX55	57696	hgsc.bcm.edu	36	12	122656611	122656611	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ATP6V0A2	23545	hgsc.bcm.edu	36	12	122799082	122799082	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
UBC	7316	hgsc.bcm.edu	36	12	123963649	123963649	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ULK1	8408	hgsc.bcm.edu	36	12	130969018	130969018	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
EP400	57634	hgsc.bcm.edu	36	12	131011263	131011263	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CYFIP1	23191	hgsc.bcm.edu	36	15	20520685	20520685	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CYFIP1	23191	hgsc.bcm.edu	36	15	20520686	20520686	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
RYR3	6263	hgsc.bcm.edu	36	15	31780543	31780543	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
RYR3	6263	hgsc.bcm.edu	36	15	31893018	31893018	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
RYR3	6263	hgsc.bcm.edu	36	15	31937406	31937406	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
EIF2AK4	440275	hgsc.bcm.edu	36	15	38076505	38076505	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
NDUFAF1	51103	hgsc.bcm.edu	36	15	39474436	39474436	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
TYRO3	7301	hgsc.bcm.edu	36	15	39657410	39657410	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ZFP106	64397	hgsc.bcm.edu	36	15	40529812	40529812	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
UBR1	197131	hgsc.bcm.edu	36	15	41083369	41083369	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
MYEF2	50804	hgsc.bcm.edu	36	15	46245453	46245453	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
RORA	6095	hgsc.bcm.edu	36	15	58706825	58706825	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CLK3	1198	hgsc.bcm.edu	36	15	72701588	72701588	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CYP1A2	1544	hgsc.bcm.edu	36	15	72834383	72834383	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
COX5A	9377	hgsc.bcm.edu	36	15	73008571	73008571	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ADAMTSL3	57188	hgsc.bcm.edu	36	15	82233330	82233330	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
NTRK3	4916	hgsc.bcm.edu	36	15	86224636	86224636	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
NTRK3	4916	hgsc.bcm.edu	36	15	86491588	86491588	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ADAMTS17	170691	hgsc.bcm.edu	36	15	98510374	98510374	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ARSF	416	hgsc.bcm.edu	36	X	3029222	3029222	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PTCHD1	139411	hgsc.bcm.edu	36	X	23321697	23321697	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
MAGEB2	4113	hgsc.bcm.edu	36	X	30146686	30146686	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CXorf38	159013	hgsc.bcm.edu	36	X	40381333	40381333	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ZNF182	7988	hgsc.bcm.edu	36	X	47721255	47721255	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PPP1R3F	89801	hgsc.bcm.edu	36	X	49030034	49030034	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
FAM120C	54954	hgsc.bcm.edu	36	X	54202712	54202712	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
MAGED2	10916	hgsc.bcm.edu	36	X	54854085	54854085	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
TAF1	6872	hgsc.bcm.edu	36	X	70518333	70518333	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ZCCHC5	203430	hgsc.bcm.edu	36	X	77799796	77799796	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
P2RY10	27334	hgsc.bcm.edu	36	X	78102727	78102727	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
BRWD3	254065	hgsc.bcm.edu	36	X	79823651	79823651	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CPXCR1	53336	hgsc.bcm.edu	36	X	87895687	87895687	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
BEX5	340542	hgsc.bcm.edu	36	X	101295673	101295673	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
COL4A6	1288	hgsc.bcm.edu	36	X	107292894	107292894	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
COL4A6	1288	hgsc.bcm.edu	36	X	107440712	107440712	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ARHGAP36	0	hgsc.bcm.edu	36	X	130048250	130048250	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
GPR112	139378	hgsc.bcm.edu	36	X	135259842	135259842	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
L1CAM	3897	hgsc.bcm.edu	36	X	152786509	152786509	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
RPL10	6138	hgsc.bcm.edu	36	X	153280070	153280070	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
F8	2157	hgsc.bcm.edu	36	X	153743289	153743289	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
F8	2157	hgsc.bcm.edu	36	X	153810276	153810276	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CRMP1	1400	hgsc.bcm.edu	36	4	5889396	5889396	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PDGFRA	5156	hgsc.bcm.edu	36	4	54822145	54822145	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
KIT	3815	hgsc.bcm.edu	36	4	55256522	55256522	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
KIT	3815	hgsc.bcm.edu	36	4	55288341	55288341	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
WDFY3	23001	hgsc.bcm.edu	36	4	85819341	85819341	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PTPN13	5783	hgsc.bcm.edu	36	4	87874918	87874918	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
HSD17B13	345275	hgsc.bcm.edu	36	4	88454114	88454114	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
GPRIN3	285513	hgsc.bcm.edu	36	4	90388768	90388768	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
TACR3	6870	hgsc.bcm.edu	36	4	104859865	104859865	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ARHGEF38	0	hgsc.bcm.edu	36	4	106729857	106729857	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
AGXT2L1	64850	hgsc.bcm.edu	36	4	109900885	109900885	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
LARP7	51574	hgsc.bcm.edu	36	4	113790257	113790257	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
GAB1	128869	hgsc.bcm.edu	36	4	144580892	144580892	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
MMAA	387254	hgsc.bcm.edu	36	4	146794600	146794600	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
LRBA	987	hgsc.bcm.edu	36	4	151731428	151731428	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
SH3D19	152503	hgsc.bcm.edu	36	4	152268306	152268306	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
FBXW7	55294	hgsc.bcm.edu	36	4	153463634	153463634	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
FBXW7	55294	hgsc.bcm.edu	36	4	153466623	153466623	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
FBXW7	55294	hgsc.bcm.edu	36	4	153552367	153552367	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
GRIA2	2891	hgsc.bcm.edu	36	4	158503628	158503628	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
FSTL5	56884	hgsc.bcm.edu	36	4	162728084	162728084	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CPE	1363	hgsc.bcm.edu	36	4	166625129	166625129	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
NEK1	4750	hgsc.bcm.edu	36	4	170745318	170745318	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ATP6V1C2	245973	hgsc.bcm.edu	36	2	10821977	10821977	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
DDX1	1653	hgsc.bcm.edu	36	2	15660167	15660167	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PFN4	375189	hgsc.bcm.edu	36	2	24198906	24198906	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
KHK	3795	hgsc.bcm.edu	36	2	27175928	27175928	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CAD	1677	hgsc.bcm.edu	36	2	27310986	27310986	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
NLRC4	58484	hgsc.bcm.edu	36	2	32331088	32331088	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
GPR75	10936	hgsc.bcm.edu	36	2	53934070	53934070	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CCT4	10575	hgsc.bcm.edu	36	2	61953162	61953162	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ADD2	119	hgsc.bcm.edu	36	2	70759467	70759467	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
AFF3	3899	hgsc.bcm.edu	36	2	99576631	99576631	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
MERTK	10461	hgsc.bcm.edu	36	2	112421600	112421600	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
NCKAP5	0	hgsc.bcm.edu	36	2	133257731	133257731	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
RIF1	55791	hgsc.bcm.edu	36	2	152028237	152028237	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ACVR1C	130399	hgsc.bcm.edu	36	2	158107608	158107608	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CCDC148	130940	hgsc.bcm.edu	36	2	158878514	158878514	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
KCNH7	90134	hgsc.bcm.edu	36	2	162961626	162961626	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
XIRP2	129446	hgsc.bcm.edu	36	2	167809655	167809655	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
XIRP2	129446	hgsc.bcm.edu	36	2	167811899	167811899	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
B3GALT1	8708	hgsc.bcm.edu	36	2	168434165	168434165	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
BBS5	129880	hgsc.bcm.edu	36	2	170062384	170062384	+	Missense_Mutation	SNP	G	G	A	rs35487251	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ZAK	51776	hgsc.bcm.edu	36	2	173764078	173764078	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
TTN	7273	hgsc.bcm.edu	36	2	179127189	179127189	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
TTN	7273	hgsc.bcm.edu	36	2	179144275	179144275	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ZSWIM2	151112	hgsc.bcm.edu	36	2	187401220	187401220	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ANKAR	150709	hgsc.bcm.edu	36	2	190316410	190316410	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PLCL1	5334	hgsc.bcm.edu	36	2	198658695	198658695	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
MAP2	10988	hgsc.bcm.edu	36	2	210278593	210278593	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
FN1	2335	hgsc.bcm.edu	36	2	216006396	216006396	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
STK36	27148	hgsc.bcm.edu	36	2	219266913	219266913	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
KIAA1486	57624	hgsc.bcm.edu	36	2	225981934	225981934	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
AGFG1	3267	hgsc.bcm.edu	36	2	228106712	228106712	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
HDAC4	9759	hgsc.bcm.edu	36	2	239763189	239763189	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
KANK1	23189	hgsc.bcm.edu	36	9	701830	701830	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
C9orf11	54586	hgsc.bcm.edu	36	9	27276330	27276330	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
NOL6	65083	hgsc.bcm.edu	36	9	33457829	33457829	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
TLN1	7094	hgsc.bcm.edu	36	9	35693799	35693799	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
MELK	9833	hgsc.bcm.edu	36	9	36641768	36641768	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
AGTPBP1	23287	hgsc.bcm.edu	36	9	87497522	87497522	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
IPPK	64768	hgsc.bcm.edu	36	9	94440332	94440332	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PTCH1	5727	hgsc.bcm.edu	36	9	97269446	97269446	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PTCH1	5727	hgsc.bcm.edu	36	9	97271059	97271059	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PTCH1	5727	hgsc.bcm.edu	36	9	97287822	97287822	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
TGFBR1	7046	hgsc.bcm.edu	36	9	100940110	100940110	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ALG2	85365	hgsc.bcm.edu	36	9	101020710	101020710	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
GRIN3A	116443	hgsc.bcm.edu	36	9	103472540	103472540	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
TLR4	7099	hgsc.bcm.edu	36	9	119515072	119515072	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
OLFML2A	169611	hgsc.bcm.edu	36	9	126612071	126612071	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
HSPA5	3309	hgsc.bcm.edu	36	9	127038735	127038735	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ABL1	25	hgsc.bcm.edu	36	9	132740142	132740142	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CAMSAP1	157922	hgsc.bcm.edu	36	9	137852875	137852875	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CACNA1B	774	hgsc.bcm.edu	36	9	140066424	140066424	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
MTUS2	0	hgsc.bcm.edu	36	13	28498812	28498812	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
SLC7A1	6541	hgsc.bcm.edu	36	13	28989903	28989903	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
BRCA2	675	hgsc.bcm.edu	36	13	31812504	31812504	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
RB1	5925	hgsc.bcm.edu	36	13	47814851	47814851	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
RB1	5925	hgsc.bcm.edu	36	13	47834984	47834984	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
RB1	5925	hgsc.bcm.edu	36	13	47851761	47851761	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
OLFM4	10562	hgsc.bcm.edu	36	13	52514069	52514069	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
OXGR1	27199	hgsc.bcm.edu	36	13	96437950	96437950	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PRKCQ	5588	hgsc.bcm.edu	36	10	6524002	6524002	+	Silent	SNP	G	G	A	rs34060945	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ITIH5	80760	hgsc.bcm.edu	36	10	7645218	7645218	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PTCHD3	374308	hgsc.bcm.edu	36	10	27742952	27742952	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
RET	5979	hgsc.bcm.edu	36	10	42928321	42928321	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
MAPK8	5599	hgsc.bcm.edu	36	10	49298283	49298283	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ADK	132	hgsc.bcm.edu	36	10	76099971	76099971	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PTEN	5728	hgsc.bcm.edu	36	10	89682986	89682986	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PTEN	5728	hgsc.bcm.edu	36	10	89701929	89701929	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PTEN	5728	hgsc.bcm.edu	36	10	89710642	89710642	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PTEN	5728	hgsc.bcm.edu	36	10	89710700	89710700	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
TNKS2	80351	hgsc.bcm.edu	36	10	93576912	93576912	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
TNKS2	80351	hgsc.bcm.edu	36	10	93592071	93592071	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
TCF7L2	6934	hgsc.bcm.edu	36	10	114900844	114900844	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
NRAP	65083	hgsc.bcm.edu	36	10	115413583	115413583	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
GFRA1	2674	hgsc.bcm.edu	36	10	117874814	117874814	+	Silent	SNP	T	T	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
DPYSL4	10570	hgsc.bcm.edu	36	10	133863895	133863895	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
KNDC1	85442	hgsc.bcm.edu	36	10	134870381	134870381	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
TERT	7015	hgsc.bcm.edu	36	5	1346682	1346682	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
UGT3A1	133688	hgsc.bcm.edu	36	5	36001554	36001554	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
IL6ST	3572	hgsc.bcm.edu	36	5	55294992	55294992	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
NSA2	10412	hgsc.bcm.edu	36	5	74105456	74105456	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
F2R	2149	hgsc.bcm.edu	36	5	76064570	76064570	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
RASGRF2	5924	hgsc.bcm.edu	36	5	80425931	80425931	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
VCAN	1462	hgsc.bcm.edu	36	5	82872760	82872760	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CCNH	902	hgsc.bcm.edu	36	5	86736503	86736503	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
MEF2C	4208	hgsc.bcm.edu	36	5	88092797	88092797	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
GPR98	84059	hgsc.bcm.edu	36	5	90108039	90108039	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PAM	23077	hgsc.bcm.edu	36	5	102392650	102392650	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
APC	324	hgsc.bcm.edu	36	5	112202478	112202478	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
APC	324	hgsc.bcm.edu	36	5	112202530	112202530	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
APC	324	hgsc.bcm.edu	36	5	112202712	112202712	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
APC	324	hgsc.bcm.edu	36	5	112202817	112202817	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
APC	324	hgsc.bcm.edu	36	5	112203061	112203061	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
APC	324	hgsc.bcm.edu	36	5	112203291	112203291	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
APC	324	hgsc.bcm.edu	36	5	112203373	112203373	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
APC	324	hgsc.bcm.edu	36	5	112203382	112203382	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
APC	324	hgsc.bcm.edu	36	5	112203573	112203573	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
AQPEP	0	hgsc.bcm.edu	36	5	115326739	115326739	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ADAMTS19	171019	hgsc.bcm.edu	36	5	129065168	129065168	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ADAMTS19	171019	hgsc.bcm.edu	36	5	129100805	129100805	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
TGFBI	7045	hgsc.bcm.edu	36	5	135422725	135422725	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PCDHGA1	56114	hgsc.bcm.edu	36	5	140690466	140690466	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PCDH1	5097	hgsc.bcm.edu	36	5	141228618	141228618	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PDGFRB	5159	hgsc.bcm.edu	36	5	149477554	149477554	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
NMUR2	56923	hgsc.bcm.edu	36	5	151764253	151764253	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
GRIA1	2890	hgsc.bcm.edu	36	5	153129990	153129990	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
SOX30	11063	hgsc.bcm.edu	36	5	156986011	156986011	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
DBN1	1627	hgsc.bcm.edu	36	5	176817070	176817070	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
NF2	4771	hgsc.bcm.edu	36	22	28380644	28380644	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
SCLY	51540	hgsc.bcm.edu	36	2	238667798	238667798	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CHUK	1147	hgsc.bcm.edu	36	10	101951834	101951834	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
PANK3	79646	hgsc.bcm.edu	36	5	167920975	167920975	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
CP	1356	hgsc.bcm.edu	36	3	150422268	150422269	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
MUC4	4585	hgsc.bcm.edu	36	3	196993221	196993316	+	In_Frame_Del	DEL	CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA	CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA	-	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA	CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
MUC4	4585	hgsc.bcm.edu	36	3	196999393	196999440	+	In_Frame_Del	DEL	GGTGGTGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGA	GGTGGTGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGA	-	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	GGTGGTGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGA	GGTGGTGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ADCY2	108	hgsc.bcm.edu	36	5	7810684	7810715	+	Frame_Shift_Del	DEL	GGCCGTGTTCAACATGGTAAGTCCCAGAGCAC	GGCCGTGTTCAACATGGTAAGTCCCAGAGCAC	-	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	GGCCGTGTTCAACATGGTAAGTCCCAGAGCAC	GGCCGTGTTCAACATGGTAAGTCCCAGAGCAC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
TBCA	6902	hgsc.bcm.edu	36	5	77024899	77024899	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
APC	324	hgsc.bcm.edu	36	5	112203505	112203505	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
EPC1	80314	hgsc.bcm.edu	36	10	32600503	32600504	+	Frame_Shift_Del	DEL	AC	AC	-	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	AC	AC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
MKI67	4288	hgsc.bcm.edu	36	10	129800254	129800255	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
MUC2	4583	hgsc.bcm.edu	36	11	1082802	1082802	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
FAM186A	121006	hgsc.bcm.edu	36	12	49032180	49032215	+	In_Frame_Del	DEL	TGAGAGGGATCTCCAATTCCTGAGCCTGCGGAGGGA	TGAGAGGGATCTCCAATTCCTGAGCCTGCGGAGGGA	-	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	TGAGAGGGATCTCCAATTCCTGAGCCTGCGGAGGGA	TGAGAGGGATCTCCAATTCCTGAGCCTGCGGAGGGA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
C14orf184	0	hgsc.bcm.edu	36	14	91110343	91110343	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
C15orf40	123207	hgsc.bcm.edu	36	15	81468275	81468275	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
KRTAP4-1	85285	hgsc.bcm.edu	36	17	36594322	36594378	+	Frame_Shift_Del	DEL	CGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG	CGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG	-	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	CGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG	CGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
ZNF772	400720	hgsc.bcm.edu	36	19	62680487	62680488	+	In_Frame_Ins	INS	-	-	GCT	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
SON	6651	hgsc.bcm.edu	36	21	33847482	33847505	+	In_Frame_Del	DEL	GTCCTGGAGTCTTCGGCTGTGACC	GTCCTGGAGTCTTCGGCTGTGACC	-	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	GTCCTGGAGTCTTCGGCTGTGACC	GTCCTGGAGTCTTCGGCTGTGACC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
NEFH	4744	hgsc.bcm.edu	36	22	28215581	28215604	+	In_Frame_Del	DEL	AGGCCAAGTCCCCAGAGAAGGAAG	AGGCCAAGTCCCCAGAGAAGGAAG	-	novel	unknown	TCGA-CM-5349-01A-21D-1719-10	TCGA-CM-5349-10A-01D-1719-10	AGGCCAAGTCCCCAGAGAAGGAAG	AGGCCAAGTCCCCAGAGAAGGAAG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	909d1990-d8f5-4139-8a1f-d3497eb530f8	724159f2-785b-4795-992a-db8e3c5e49a8
