Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID
C7orf27	221927	hgsc.bcm.edu	36	7	2544307	2544307	+	Silent	SNP	T	T	C	rs1043291	by2Hit2Allele;byCluster;byFrequency;byHapMap	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
AHR	196	hgsc.bcm.edu	36	7	17349129	17349129	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
EGFR	1956	hgsc.bcm.edu	36	7	55216492	55216492	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
RELN	5649	hgsc.bcm.edu	36	7	102978860	102978860	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
CTTNBP2	83992	hgsc.bcm.edu	36	7	117138970	117138970	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
TRIB3	57761	hgsc.bcm.edu	36	20	319972	319972	+	Silent	SNP	T	T	C	rs6051637	by2Hit2Allele;byCluster;byFrequency;byHapMap	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
RBL1	5933	hgsc.bcm.edu	36	20	35124015	35124015	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
BPI	671	hgsc.bcm.edu	36	20	36385776	36385776	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
ELMO2	63916	hgsc.bcm.edu	36	20	44448214	44448214	+	Silent	SNP	T	T	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
ENTHD1	150350	hgsc.bcm.edu	36	22	38613516	38613516	+	Silent	SNP	G	G	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
SMC1B	27127	hgsc.bcm.edu	36	22	44168279	44168279	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
POTEG	404785	hgsc.bcm.edu	36	14	18623824	18623824	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
SLC7A7	9056	hgsc.bcm.edu	36	14	22317891	22317891	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
AKAP6	9472	hgsc.bcm.edu	36	14	32084931	32084931	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
FBXO34	55030	hgsc.bcm.edu	36	14	54888172	54888172	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
KIAA1409	57578	hgsc.bcm.edu	36	14	93158284	93158284	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
DDX24	57062	hgsc.bcm.edu	36	14	93597146	93597146	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
TECPR2	9895	hgsc.bcm.edu	36	14	101968207	101968207	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
C19orf22	91300	hgsc.bcm.edu	36	19	853083	853083	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
OR10H4	126541	hgsc.bcm.edu	36	19	15921313	15921313	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
NR2F6	2063	hgsc.bcm.edu	36	19	17204290	17204290	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
TSHZ3	57616	hgsc.bcm.edu	36	19	36461473	36461473	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
MAG	4099	hgsc.bcm.edu	36	19	40478461	40478461	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
PRODH2	58510	hgsc.bcm.edu	36	19	40982817	40982817	+	Missense_Mutation	SNP	C	C	T	rs3761097	byCluster;byFrequency;byHapMap	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
CD79A	973	hgsc.bcm.edu	36	19	47076631	47076631	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
GPR32	2854	hgsc.bcm.edu	36	19	55966221	55966221	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
PTPRH	5794	hgsc.bcm.edu	36	19	60408621	60408621	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
CSMD1	64478	hgsc.bcm.edu	36	8	2783655	2783655	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
ADAMDEC1	27299	hgsc.bcm.edu	36	8	24312389	24312389	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
DUSP26	285193	hgsc.bcm.edu	36	8	33570666	33570666	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
GPR124	25960	hgsc.bcm.edu	36	8	37818032	37818032	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
FGFR1	2260	hgsc.bcm.edu	36	8	38394007	38394007	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
ADAM18	8749	hgsc.bcm.edu	36	8	39700542	39700542	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
PRKDC	5591	hgsc.bcm.edu	36	8	48963706	48963706	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
PAG1	55824	hgsc.bcm.edu	36	8	82051467	82051467	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
TMEM55A	55529	hgsc.bcm.edu	36	8	92101608	92101608	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
RSPO2	340419	hgsc.bcm.edu	36	8	109070507	109070507	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
PIK3CD	22883	hgsc.bcm.edu	36	1	9693106	9693106	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
CTRC	11330	hgsc.bcm.edu	36	1	15639424	15639424	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
USP48	84196	hgsc.bcm.edu	36	1	21894211	21894211	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
AIM1L	55057	hgsc.bcm.edu	36	1	26523290	26523290	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
MATN1	4146	hgsc.bcm.edu	36	1	30966852	30966852	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
LCK	3932	hgsc.bcm.edu	36	1	32514588	32514588	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
GPBP1L1	60313	hgsc.bcm.edu	36	1	45867894	45867894	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
USP24	23358	hgsc.bcm.edu	36	1	55344492	55344492	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
DAB1	115209	hgsc.bcm.edu	36	1	57374899	57374899	+	Missense_Mutation	SNP	C	C	T	rs1855377	byCluster;byFrequency;byHapMap	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
FPGT-TNNI3K	0	hgsc.bcm.edu	36	1	74677770	74677770	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
CDC7	8317	hgsc.bcm.edu	36	1	91749763	91749763	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
LPPR5	0	hgsc.bcm.edu	36	1	99131245	99131245	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
CELSR2	1952	hgsc.bcm.edu	36	1	109596782	109596782	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
NRAS	4893	hgsc.bcm.edu	36	1	115058053	115058053	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
GJA8	2703	hgsc.bcm.edu	36	1	145846788	145846788	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
GJA8	2703	hgsc.bcm.edu	36	1	145847802	145847802	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
TCHHL1	126637	hgsc.bcm.edu	36	1	150326132	150326132	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
FCRL3	115352	hgsc.bcm.edu	36	1	155932605	155932605	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
HMCN1	83872	hgsc.bcm.edu	36	1	184275525	184275525	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
PLXNA2	5362	hgsc.bcm.edu	36	1	206282210	206282210	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
FMN2	56776	hgsc.bcm.edu	36	1	238437564	238437564	+	Silent	SNP	T	T	C	rs4997329	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
UBQLN3	50613	hgsc.bcm.edu	36	11	5486050	5486050	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
TRIM3	10612	hgsc.bcm.edu	36	11	6435943	6435943	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
DCDC5	196296	hgsc.bcm.edu	36	11	30887215	30887215	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
TRAF6	7189	hgsc.bcm.edu	36	11	36468339	36468339	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
OR9Q2	219957	hgsc.bcm.edu	36	11	57714695	57714695	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
C11orf48	79081	hgsc.bcm.edu	36	11	62191746	62191746	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
PRKRIR	5612	hgsc.bcm.edu	36	11	75740173	75740173	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
MYO7A	4647	hgsc.bcm.edu	36	11	76573440	76573440	+	Missense_Mutation	SNP	T	T	G	rs12291062	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
MMP13	4322	hgsc.bcm.edu	36	11	102320236	102320236	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
ATM	472	hgsc.bcm.edu	36	11	107705109	107705109	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
HIST1H3G	8355	hgsc.bcm.edu	36	6	26379193	26379193	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
TEAD3	7005	hgsc.bcm.edu	36	6	35562293	35562293	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
STK38	11329	hgsc.bcm.edu	36	6	36574134	36574134	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
CD109	135228	hgsc.bcm.edu	36	6	74525418	74525418	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
GABRR2	2570	hgsc.bcm.edu	36	6	90066266	90066266	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
MDN1	23195	hgsc.bcm.edu	36	6	90541139	90541139	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
KIAA0776	23376	hgsc.bcm.edu	36	6	97095210	97095210	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
GRIK2	2901	hgsc.bcm.edu	36	6	102479277	102479277	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
SYNE1	23345	hgsc.bcm.edu	36	6	152671411	152671411	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
MYCT1	80177	hgsc.bcm.edu	36	6	153084695	153084695	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
CNKSR3	154043	hgsc.bcm.edu	36	6	154785391	154785391	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
ZMYND15	84225	hgsc.bcm.edu	36	17	4593495	4593495	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
TP53	7157	hgsc.bcm.edu	36	17	7518259	7518259	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
MYH2	4620	hgsc.bcm.edu	36	17	10368869	10368869	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
KCNJ12	3768	hgsc.bcm.edu	36	17	21260000	21260000	+	Silent	SNP	C	C	T	rs16962951	byFrequency;byHapMap	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
SPAG5	10615	hgsc.bcm.edu	36	17	23943828	23943828	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
SUPT6H	6830	hgsc.bcm.edu	36	17	24025724	24025724	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
BRCA1	672	hgsc.bcm.edu	36	17	38497843	38497843	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
WFIKKN2	124857	hgsc.bcm.edu	36	17	46272133	46272133	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
TMEM49	81671	hgsc.bcm.edu	36	17	55169598	55169598	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
DCAF7	0	hgsc.bcm.edu	36	17	59014622	59014622	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
PRDM15	63977	hgsc.bcm.edu	36	21	42114567	42114567	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
CREBBP	1387	hgsc.bcm.edu	36	16	3721794	3721794	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
GRIN2A	2903	hgsc.bcm.edu	36	16	9765662	9765662	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
TEKT5	146279	hgsc.bcm.edu	36	16	10628965	10628965	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
GTF3C1	2975	hgsc.bcm.edu	36	16	27416612	27416612	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
CDH8	1006	hgsc.bcm.edu	36	16	60412407	60412407	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
SLC7A6	9057	hgsc.bcm.edu	36	16	66883037	66883037	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
HYDIN	54768	hgsc.bcm.edu	36	16	69512219	69512219	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
HRH4	59340	hgsc.bcm.edu	36	18	20311424	20311424	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
SMAD4	4089	hgsc.bcm.edu	36	18	46845862	46845862	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
SMAD4	4089	hgsc.bcm.edu	36	18	46845899	46845899	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
DCC	1630	hgsc.bcm.edu	36	18	48988183	48988183	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
SETD2	29072	hgsc.bcm.edu	36	3	47119910	47119910	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
LAMB2	84823	hgsc.bcm.edu	36	3	49138896	49138896	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
BSN	8927	hgsc.bcm.edu	36	3	49670019	49670019	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
IP6K1	9807	hgsc.bcm.edu	36	3	49739844	49739844	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
CADPS	8618	hgsc.bcm.edu	36	3	62435000	62435000	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
EPHA3	2042	hgsc.bcm.edu	36	3	89342042	89342042	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
GRAMD1C	54762	hgsc.bcm.edu	36	3	115105754	115105754	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
GOLGB1	2804	hgsc.bcm.edu	36	3	122893195	122893195	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
WDR5B	54554	hgsc.bcm.edu	36	3	123616505	123616505	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
ATP2C1	27032	hgsc.bcm.edu	36	3	132202831	132202831	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
NPHP3	27031	hgsc.bcm.edu	36	3	133916621	133916621	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
SLC33A1	9197	hgsc.bcm.edu	36	3	157043033	157043033	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
PIK3CA	5290	hgsc.bcm.edu	36	3	180400173	180400173	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
PIK3CA	5290	hgsc.bcm.edu	36	3	180418785	180418785	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
PIK3CA	5290	hgsc.bcm.edu	36	3	180430544	180430544	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
MAP3K13	9175	hgsc.bcm.edu	36	3	186667351	186667351	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
MUC20	200958	hgsc.bcm.edu	36	3	196942216	196942216	+	Missense_Mutation	SNP	C	C	T	rs11923495	byFrequency;byHapMap	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
WNK1	65125	hgsc.bcm.edu	36	12	809533	809533	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
PRMT8	56341	hgsc.bcm.edu	36	12	3556334	3556334	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
LRRC23	10233	hgsc.bcm.edu	36	12	6885138	6885138	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
ITPR2	3709	hgsc.bcm.edu	36	12	26726807	26726807	+	Silent	SNP	T	T	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
SLC38A1	81539	hgsc.bcm.edu	36	12	44877976	44877976	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
KRT6A	3853	hgsc.bcm.edu	36	12	51173147	51173147	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
KRT73	319101	hgsc.bcm.edu	36	12	51298330	51298330	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
SLC26A10	65012	hgsc.bcm.edu	36	12	56301802	56301802	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
SYT1	6857	hgsc.bcm.edu	36	12	78203760	78203760	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
LRRIQ1	84125	hgsc.bcm.edu	36	12	83973687	83973687	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
PLXNC1	10154	hgsc.bcm.edu	36	12	93099438	93099438	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
MYBPC1	4604	hgsc.bcm.edu	36	12	100567238	100567238	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
CRY1	1407	hgsc.bcm.edu	36	12	105919269	105919269	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
SDSL	113675	hgsc.bcm.edu	36	12	112356374	112356374	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
KNTC1	9735	hgsc.bcm.edu	36	12	121621399	121621399	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
SBNO1	55206	hgsc.bcm.edu	36	12	122366105	122366105	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
TMEM132D	121256	hgsc.bcm.edu	36	12	128132438	128132438	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
C15orf2	23742	hgsc.bcm.edu	36	15	22472742	22472742	+	Missense_Mutation	SNP	T	T	C	rs3784246	byCluster;byFrequency;byHapMap	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
ATP10A	57194	hgsc.bcm.edu	36	15	23577404	23577404	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
SLC12A6	9990	hgsc.bcm.edu	36	15	32316304	32316304	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
HDC	51696	hgsc.bcm.edu	36	15	48334108	48334108	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
WDR93	56964	hgsc.bcm.edu	36	15	88077313	88077313	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
KAL1	3730	hgsc.bcm.edu	36	X	8463821	8463821	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
RPS6KA3	6197	hgsc.bcm.edu	36	X	20103288	20103288	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
PTCHD1	139411	hgsc.bcm.edu	36	X	23320917	23320917	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
USP9X	8239	hgsc.bcm.edu	36	X	40881025	40881025	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
SSX3	10214	hgsc.bcm.edu	36	X	48094430	48094430	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
MAGED1	9500	hgsc.bcm.edu	36	X	51661482	51661482	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
SPIN4	139886	hgsc.bcm.edu	36	X	62487128	62487128	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
LAS1L	81887	hgsc.bcm.edu	36	X	64660778	64660778	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
FOXO4	4303	hgsc.bcm.edu	36	X	70237766	70237766	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
MCART6	401612	hgsc.bcm.edu	36	X	103236258	103236258	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
GPC4	2239	hgsc.bcm.edu	36	X	132266439	132266439	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
BCAP31	10134	hgsc.bcm.edu	36	X	152642184	152642184	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
PPBP	5473	hgsc.bcm.edu	36	4	75072566	75072566	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
EREG	2069	hgsc.bcm.edu	36	4	75464085	75464085	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
FGF2	2258	hgsc.bcm.edu	36	4	124032998	124032998	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
FAT4	79633	hgsc.bcm.edu	36	4	126592924	126592924	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
ELF2	1998	hgsc.bcm.edu	36	4	140199646	140199646	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
SORBS2	8470	hgsc.bcm.edu	36	4	186781829	186781829	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
PCBP1	5093	hgsc.bcm.edu	36	2	70168678	70168678	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
CTNNA2	1496	hgsc.bcm.edu	36	2	79990394	79990394	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
XIRP2	129446	hgsc.bcm.edu	36	2	167818893	167818893	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
CIR1	7335	hgsc.bcm.edu	36	2	174921798	174921798	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
TTN	7273	hgsc.bcm.edu	36	2	179193495	179193495	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
ERBB4	2066	hgsc.bcm.edu	36	2	212285100	212285100	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
PTPRN	5798	hgsc.bcm.edu	36	2	219863511	219863511	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
JAK2	3717	hgsc.bcm.edu	36	9	5062542	5062542	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
VPS13A	23230	hgsc.bcm.edu	36	9	79014256	79014256	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
ZCCHC6	79670	hgsc.bcm.edu	36	9	88113952	88113952	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
DBC1	57805	hgsc.bcm.edu	36	9	120969784	120969784	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
TTF1	7270	hgsc.bcm.edu	36	9	134267312	134267312	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
CACNA1B	774	hgsc.bcm.edu	36	9	140063588	140063588	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
MIPEP	4285	hgsc.bcm.edu	36	13	23228737	23228737	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
PDS5B	23047	hgsc.bcm.edu	36	13	32130411	32130411	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
CCNA1	8900	hgsc.bcm.edu	36	13	35914758	35914758	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
TRPC4	7223	hgsc.bcm.edu	36	13	37123458	37123458	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
CYSLTR2	57105	hgsc.bcm.edu	36	13	48179252	48179252	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
TM9SF2	9375	hgsc.bcm.edu	36	13	99005865	99005865	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
NMT2	9397	hgsc.bcm.edu	36	10	15201475	15201475	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
MYO3A	53904	hgsc.bcm.edu	36	10	26503399	26503399	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
LYZL1	84569	hgsc.bcm.edu	36	10	29618110	29618110	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
ARHGAP22	58504	hgsc.bcm.edu	36	10	49324537	49324537	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
OGDHL	55753	hgsc.bcm.edu	36	10	50629888	50629888	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
CCAR1	55749	hgsc.bcm.edu	36	10	70172280	70172280	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
DUSP13	51207	hgsc.bcm.edu	36	10	76527575	76527575	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
PTEN	5728	hgsc.bcm.edu	36	10	89643838	89643838	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
PTEN	5728	hgsc.bcm.edu	36	10	89715052	89715052	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
PLCE1	51196	hgsc.bcm.edu	36	10	95781021	95781021	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
DCLRE1A	9937	hgsc.bcm.edu	36	10	115595522	115595522	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
DNAH5	1767	hgsc.bcm.edu	36	5	13807367	13807367	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
CDH10	1008	hgsc.bcm.edu	36	5	24523609	24523609	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
FAM169A	26049	hgsc.bcm.edu	36	5	74173212	74173212	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
GPR98	84059	hgsc.bcm.edu	36	5	90015590	90015590	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
APC	324	hgsc.bcm.edu	36	5	112192515	112192515	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
APC	324	hgsc.bcm.edu	36	5	112203206	112203206	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
APC	324	hgsc.bcm.edu	36	5	112204716	112204716	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
PCDHA10	56139	hgsc.bcm.edu	36	5	140216996	140216996	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
PCDHGA3	56112	hgsc.bcm.edu	36	5	140706046	140706046	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
RBM27	54439	hgsc.bcm.edu	36	5	145597188	145597188	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
FAT2	2196	hgsc.bcm.edu	36	5	150925768	150925768	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
PRKRA	8575	hgsc.bcm.edu	36	2	179009117	179009117	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
CLSPN	63967	hgsc.bcm.edu	36	1	35976247	35976249	+	In_Frame_Del	DEL	TTC	TTC	-	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	TTC	TTC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
EIF2B3	8891	hgsc.bcm.edu	36	1	45179769	45179769	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
PCSK9	255738	hgsc.bcm.edu	36	1	55278140	55278141	+	In_Frame_Ins	INS	-	-	CTG	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
CLCA4	22802	hgsc.bcm.edu	36	1	86798245	86798246	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
FMN2	56776	hgsc.bcm.edu	36	1	238437537	238437569	+	In_Frame_Del	DEL	GCCCCCTCTACCCGGAGCGGGAATACCTCCTCC	GCCCCCTCTACCCGGAGCGGGAATACCTCCTCC	-	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	GCCCCCTCTACCCGGAGCGGGAATACCTCCTCC	GCCCCCTCTACCCGGAGCGGGAATACCTCCTCC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
LOC388946	388946	hgsc.bcm.edu	36	2	46561392	46561392	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
PRKRA	8575	hgsc.bcm.edu	36	2	179023981	179023982	+	Frame_Shift_Del	DEL	GC	GC	-	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	GC	GC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
RUFY4	285180	hgsc.bcm.edu	36	2	218649421	218649421	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
MUC4	4585	hgsc.bcm.edu	36	3	196993221	196993316	+	In_Frame_Del	DEL	CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA	CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA	-	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA	CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
CRIPAK	285464	hgsc.bcm.edu	36	4	1378622	1378623	+	Frame_Shift_Ins	INS	-	-	CA	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
APC	324	hgsc.bcm.edu	36	5	112203929	112203929	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
HIST1H2AL	8332	hgsc.bcm.edu	36	6	27941475	27941476	+	Frame_Shift_Del	DEL	GA	GA	-	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	GA	GA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
PRRC2A	0	hgsc.bcm.edu	36	6	31703752	31703763	+	In_Frame_Del	DEL	CCTGCTGCCCCA	CCTGCTGCCCCA	-	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	CCTGCTGCCCCA	CCTGCTGCCCCA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
FNDC1	84624	hgsc.bcm.edu	36	6	159580770	159580787	+	In_Frame_Del	DEL	CCACCACCCGCCGCACGA	CCACCACCCGCCGCACGA	-	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	CCACCACCCGCCGCACGA	CCACCACCCGCCGCACGA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
KIAA1324L	222223	hgsc.bcm.edu	36	7	86358984	86358984	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
PRSS37	0	hgsc.bcm.edu	36	7	141183498	141183499	+	Frame_Shift_Ins	INS	-	-	CGCAAGT	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
SGK223	0	hgsc.bcm.edu	36	8	8272278	8272279	+	In_Frame_Ins	INS	-	-	GCCGCT	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
KRTAP5-2	440021	hgsc.bcm.edu	36	11	1575749	1575778	+	In_Frame_Del	DEL	CCCCCACAGGAGCCACAGCCCCCCTTGGAG	CCCCCACAGGAGCCACAGCCCCCCTTGGAG	-	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	CCCCCACAGGAGCCACAGCCCCCCTTGGAG	CCCCCACAGGAGCCACAGCCCCCCTTGGAG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
ART5	116969	hgsc.bcm.edu	36	11	3618161	3618162	+	In_Frame_Ins	INS	-	-	TGG	rs3062849	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
PRR25	0	hgsc.bcm.edu	36	16	803357	803373	+	Frame_Shift_Del	DEL	GGACGCCGGACCGACAC	GGACGCCGGACCGACAC	-	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	GGACGCCGGACCGACAC	GGACGCCGGACCGACAC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
C21orf58	54058	hgsc.bcm.edu	36	21	46546413	46546414	+	In_Frame_Ins	INS	-	-	TGG	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
GPR50	9248	hgsc.bcm.edu	36	X	150100216	150100227	+	In_Frame_Del	DEL	CACCACTGGCCA	CACCACTGGCCA	-	novel	unknown	TCGA-CM-6680-01A-11D-1835-10	TCGA-CM-6680-10A-01D-1835-10	CACCACTGGCCA	CACCACTGGCCA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	7b2b1664-9d9f-4529-80c9-132b8ba21ff2	2e32e3c9-9c73-4b1f-bc92-bbbc38abd9e5
