Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID
LFNG	3955	hgsc.bcm.edu	36	7	2531696	2531696	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
IQCE	23288	hgsc.bcm.edu	36	7	2611083	2611083	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
AHR	196	hgsc.bcm.edu	36	7	17349127	17349127	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
ELMO1	9844	hgsc.bcm.edu	36	7	37265362	37265362	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
AMPH	273	hgsc.bcm.edu	36	7	38423972	38423972	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
EGFR	1956	hgsc.bcm.edu	36	7	55209156	55209156	+	Silent	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
EGFR	1956	hgsc.bcm.edu	36	7	55209169	55209169	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
EGFR	1956	hgsc.bcm.edu	36	7	55209983	55209983	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
EGFR	1956	hgsc.bcm.edu	36	7	55226975	55226975	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
CYP3A4	1576	hgsc.bcm.edu	36	7	99219616	99219616	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
MOSPD3	64598	hgsc.bcm.edu	36	7	100049136	100049136	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
SRRT	51593	hgsc.bcm.edu	36	7	100316845	100316845	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
MUC17	140453	hgsc.bcm.edu	36	7	100466963	100466963	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
PPP1R3A	5506	hgsc.bcm.edu	36	7	113307145	113307145	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
KCND2	3751	hgsc.bcm.edu	36	7	120160329	120160329	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
AGAP3	116988	hgsc.bcm.edu	36	7	150471574	150471574	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
EPB41L1	2036	hgsc.bcm.edu	36	20	34225223	34225223	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
CTNNBL1	56259	hgsc.bcm.edu	36	20	35922123	35922123	+	Silent	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
TFAP2C	7022	hgsc.bcm.edu	36	20	54645201	54645201	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
PTK6	5753	hgsc.bcm.edu	36	20	61631884	61631884	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
POTEH	23784	hgsc.bcm.edu	36	22	14667538	14667538	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
MYO18B	84700	hgsc.bcm.edu	36	22	24569776	24569776	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
OR4N5	390437	hgsc.bcm.edu	36	14	19682586	19682586	+	Silent	SNP	T	T	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
MYH7	4625	hgsc.bcm.edu	36	14	22971762	22971762	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
PRKD1	5587	hgsc.bcm.edu	36	14	29466246	29466246	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
CLEC14A	161198	hgsc.bcm.edu	36	14	37794970	37794970	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
TRIM9	114088	hgsc.bcm.edu	36	14	50513786	50513786	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
PTGDR	5729	hgsc.bcm.edu	36	14	51804674	51804674	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
DAAM1	23002	hgsc.bcm.edu	36	14	58905226	58905226	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
SYNE2	23224	hgsc.bcm.edu	36	14	63586270	63586270	+	Silent	SNP	C	C	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
ZFYVE26	23503	hgsc.bcm.edu	36	14	67292497	67292497	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
DDX24	57062	hgsc.bcm.edu	36	14	93597146	93597146	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
PPP4R4	57718	hgsc.bcm.edu	36	14	93803086	93803086	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
CDC42BPB	9578	hgsc.bcm.edu	36	14	102503225	102503225	+	Silent	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
DOT1L	84444	hgsc.bcm.edu	36	19	2174311	2174311	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
ATCAY	85300	hgsc.bcm.edu	36	19	3856637	3856637	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
EMR2	30817	hgsc.bcm.edu	36	19	14737499	14737499	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
MAST3	23031	hgsc.bcm.edu	36	19	18093540	18093540	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
ZNF234	10780	hgsc.bcm.edu	36	19	49353125	49353125	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
GPR4	2828	hgsc.bcm.edu	36	19	50786019	50786019	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
EML2	24139	hgsc.bcm.edu	36	19	50808736	50808736	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
PRR12	57479	hgsc.bcm.edu	36	19	54792702	54792702	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
ZNF432	9668	hgsc.bcm.edu	36	19	57229276	57229276	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
ZNF761	388561	hgsc.bcm.edu	36	19	58650172	58650172	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
GP6	51206	hgsc.bcm.edu	36	19	60217705	60217705	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
ZNF582	147948	hgsc.bcm.edu	36	19	61587437	61587437	+	Silent	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
ZNF134	7693	hgsc.bcm.edu	36	19	62823718	62823718	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
MYOM2	9172	hgsc.bcm.edu	36	8	2051254	2051254	+	Silent	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
CHD7	55636	hgsc.bcm.edu	36	8	61940738	61940738	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
PREX2	80243	hgsc.bcm.edu	36	8	69152225	69152225	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
TRPS1	7227	hgsc.bcm.edu	36	8	116668487	116668487	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
TG	7038	hgsc.bcm.edu	36	8	134049253	134049253	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
CHRAC1	54108	hgsc.bcm.edu	36	8	141590860	141590860	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
CAMTA1	23261	hgsc.bcm.edu	36	1	7646880	7646880	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
TNFRSF9	3604	hgsc.bcm.edu	36	1	7903501	7903501	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
TAS1R2	80834	hgsc.bcm.edu	36	1	19054056	19054056	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
CLSPN	63967	hgsc.bcm.edu	36	1	35998637	35998637	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
LEPRE1	64175	hgsc.bcm.edu	36	1	42996076	42996076	+	Missense_Mutation	SNP	C	C	T	rs6700677	byCluster;byFrequency;byHapMap	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
ATP6V0B	533	hgsc.bcm.edu	36	1	44215349	44215349	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
PTCH2	8643	hgsc.bcm.edu	36	1	45069201	45069201	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
TSPAN1	10103	hgsc.bcm.edu	36	1	46423342	46423342	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
USP24	23358	hgsc.bcm.edu	36	1	55375897	55375897	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
C8B	732	hgsc.bcm.edu	36	1	57179172	57179172	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
CACHD1	57685	hgsc.bcm.edu	36	1	64872342	64872342	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
CACHD1	57685	hgsc.bcm.edu	36	1	64886108	64886108	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
RPE65	6121	hgsc.bcm.edu	36	1	68677522	68677522	+	Silent	SNP	A	A	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
GBP6	163351	hgsc.bcm.edu	36	1	89619948	89619948	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
EPHX4	253152	hgsc.bcm.edu	36	1	92290769	92290769	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
DPYD	1806	hgsc.bcm.edu	36	1	97787842	97787842	+	Silent	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
LPPR4	9890	hgsc.bcm.edu	36	1	99539964	99539964	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
NRAS	4893	hgsc.bcm.edu	36	1	115058060	115058060	+	Silent	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
NUP210L	91181	hgsc.bcm.edu	36	1	152262267	152262267	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
INSRR	3645	hgsc.bcm.edu	36	1	155090401	155090401	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
SPTA1	6708	hgsc.bcm.edu	36	1	156859470	156859470	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
ADAMTS4	9507	hgsc.bcm.edu	36	1	159430449	159430449	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
ASTN1	460	hgsc.bcm.edu	36	1	175193501	175193501	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
LGR6	59352	hgsc.bcm.edu	36	1	200554229	200554229	+	Silent	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
RABIF	5877	hgsc.bcm.edu	36	1	201116859	201116859	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
USH2A	7399	hgsc.bcm.edu	36	1	214078022	214078022	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
USH2A	7399	hgsc.bcm.edu	36	1	214439699	214439699	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
KIAA1804	84451	hgsc.bcm.edu	36	1	231582044	231582044	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
MUC5B	727897	hgsc.bcm.edu	36	11	1223834	1223834	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
OSBPL5	114879	hgsc.bcm.edu	36	11	3071429	3071429	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
OR52B6	340980	hgsc.bcm.edu	36	11	5559627	5559627	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
WT1	7490	hgsc.bcm.edu	36	11	32370142	32370142	+	Silent	SNP	G	G	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
SLC1A2	6506	hgsc.bcm.edu	36	11	35265001	35265001	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
MS4A12	54860	hgsc.bcm.edu	36	11	60031118	60031118	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
MOGAT2	80168	hgsc.bcm.edu	36	11	75106598	75106598	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
MYO7A	4647	hgsc.bcm.edu	36	11	76583206	76583206	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
NPAT	4863	hgsc.bcm.edu	36	11	107569927	107569927	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
ATM	472	hgsc.bcm.edu	36	11	107625034	107625034	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
ATM	472	hgsc.bcm.edu	36	11	107629929	107629929	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
ATM	472	hgsc.bcm.edu	36	11	107705119	107705119	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
GRIK4	2900	hgsc.bcm.edu	36	11	120338464	120338464	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
FLI1	2313	hgsc.bcm.edu	36	11	128185582	128185582	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
BMP6	654	hgsc.bcm.edu	36	6	7825460	7825460	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
GCNT2	2651	hgsc.bcm.edu	36	6	10664685	10664685	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
CAP2	10486	hgsc.bcm.edu	36	6	17651146	17651146	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
GMNN	51053	hgsc.bcm.edu	36	6	24892315	24892315	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
ZSCAN16	80345	hgsc.bcm.edu	36	6	28202562	28202562	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
OR14J1	442191	hgsc.bcm.edu	36	6	29382962	29382962	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
VARS	7407	hgsc.bcm.edu	36	6	31861012	31861012	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
HSPA1L	3305	hgsc.bcm.edu	36	6	31885987	31885987	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
TNXB	7148	hgsc.bcm.edu	36	6	32125300	32125300	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
TNXB	7148	hgsc.bcm.edu	36	6	32144399	32144399	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
TULP1	7287	hgsc.bcm.edu	36	6	35587503	35587503	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
TRERF1	55809	hgsc.bcm.edu	36	6	42322259	42322259	+	Silent	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
CUL9	23113	hgsc.bcm.edu	36	6	43281863	43281863	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
BAI3	577	hgsc.bcm.edu	36	6	69741949	69741949	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
DDX43	55510	hgsc.bcm.edu	36	6	74161589	74161589	+	Silent	SNP	C	C	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
IMPG1	3617	hgsc.bcm.edu	36	6	76785219	76785219	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
RRAGD	58528	hgsc.bcm.edu	36	6	90134616	90134616	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
FBXL4	26235	hgsc.bcm.edu	36	6	99460231	99460231	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
FOXO3	2309	hgsc.bcm.edu	36	6	109091836	109091836	+	Silent	SNP	G	G	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
AKD1	221264	hgsc.bcm.edu	36	6	110102102	110102102	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
ROS1	6098	hgsc.bcm.edu	36	6	117737958	117737958	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
ENPP1	5167	hgsc.bcm.edu	36	6	132253283	132253283	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
TAAR6	319100	hgsc.bcm.edu	36	6	132933913	132933913	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
TNFAIP3	7128	hgsc.bcm.edu	36	6	138242962	138242962	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
AKAP12	9590	hgsc.bcm.edu	36	6	151714336	151714336	+	Silent	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
FNDC1	84624	hgsc.bcm.edu	36	6	159573351	159573351	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
TRPV1	7442	hgsc.bcm.edu	36	17	3427693	3427693	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
TP53	7157	hgsc.bcm.edu	36	17	7518273	7518273	+	Missense_Mutation	SNP	C	C	T	rs28934575	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
MYH2	4620	hgsc.bcm.edu	36	17	10381793	10381793	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
TAOK1	57551	hgsc.bcm.edu	36	17	24893832	24893832	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
NF1	4763	hgsc.bcm.edu	36	17	26586873	26586873	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
RFFL	117584	hgsc.bcm.edu	36	17	30367561	30367561	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
SLFN12L	342615	hgsc.bcm.edu	36	17	30826409	30826409	+	Silent	SNP	A	A	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
KRTAP4-8	728224	hgsc.bcm.edu	36	17	36507650	36507650	+	Silent	SNP	C	C	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
AOC3	8639	hgsc.bcm.edu	36	17	38262003	38262003	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
SLC25A39	51629	hgsc.bcm.edu	36	17	39755356	39755356	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
ITGA2B	3674	hgsc.bcm.edu	36	17	39808546	39808546	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
FZD2	2535	hgsc.bcm.edu	36	17	39992127	39992127	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
OSBPL7	114881	hgsc.bcm.edu	36	17	43252635	43252635	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
GGA3	23163	hgsc.bcm.edu	36	17	70748031	70748031	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
GRB2	2885	hgsc.bcm.edu	36	17	70901280	70901280	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
CLDN17	26285	hgsc.bcm.edu	36	21	30460169	30460169	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
KRTAP19-4	337971	hgsc.bcm.edu	36	21	30791267	30791267	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
TIAM1	7074	hgsc.bcm.edu	36	21	31448450	31448450	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
SFRS15	57466	hgsc.bcm.edu	36	21	31987580	31987580	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
MX1	4599	hgsc.bcm.edu	36	21	41746565	41746565	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
ZC3H7A	29066	hgsc.bcm.edu	36	16	11768901	11768901	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
SCNN1B	6338	hgsc.bcm.edu	36	16	23296044	23296044	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
RBBP6	5930	hgsc.bcm.edu	36	16	24485990	24485990	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
NOD2	64127	hgsc.bcm.edu	36	16	49291058	49291058	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
HYDIN	54768	hgsc.bcm.edu	36	16	69499751	69499751	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
USP10	84669	hgsc.bcm.edu	36	16	83363711	83363711	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
CIDEA	1149	hgsc.bcm.edu	36	18	12267217	12267217	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
RPRD1A	55197	hgsc.bcm.edu	36	18	31860958	31860958	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
DCC	1630	hgsc.bcm.edu	36	18	49183165	49183165	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
SERPINB4	6318	hgsc.bcm.edu	36	18	59457509	59457509	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
RBFA	0	hgsc.bcm.edu	36	18	75899499	75899499	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
NR2C2	7182	hgsc.bcm.edu	36	3	15032691	15032691	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
CCR4	57472	hgsc.bcm.edu	36	3	32970393	32970393	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
MLH1	4292	hgsc.bcm.edu	36	3	37065074	37065074	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
OXSR1	9943	hgsc.bcm.edu	36	3	38264203	38264203	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
CTNNB1	1499	hgsc.bcm.edu	36	3	41241039	41241039	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
CTNNB1	1499	hgsc.bcm.edu	36	3	41242281	41242281	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
RRP9	9136	hgsc.bcm.edu	36	3	51950504	51950504	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
PTPRG	5793	hgsc.bcm.edu	36	3	62164618	62164618	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
EPHA3	2042	hgsc.bcm.edu	36	3	89342191	89342191	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
OR5H2	79310	hgsc.bcm.edu	36	3	99484484	99484484	+	Silent	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
ZBTB20	26137	hgsc.bcm.edu	36	3	115552581	115552581	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
GOLGB1	2804	hgsc.bcm.edu	36	3	122893051	122893051	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
SCHIP1	29970	hgsc.bcm.edu	36	3	161097225	161097225	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
PIK3CA	5290	hgsc.bcm.edu	36	3	180434672	180434672	+	Silent	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
PIK3CA	5290	hgsc.bcm.edu	36	3	180434697	180434697	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
DVL3	1857	hgsc.bcm.edu	36	3	185365318	185365318	+	Silent	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
IL1RAP	3556	hgsc.bcm.edu	36	3	191809608	191809608	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
FGF12	2257	hgsc.bcm.edu	36	3	193608508	193608508	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
ATP13A4	84239	hgsc.bcm.edu	36	3	194693626	194693626	+	Silent	SNP	C	C	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
MUC4	4585	hgsc.bcm.edu	36	3	197000649	197000649	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
PRMT8	56341	hgsc.bcm.edu	36	12	3562523	3562523	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
CD163	9332	hgsc.bcm.edu	36	12	7531473	7531473	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
STYK1	55359	hgsc.bcm.edu	36	12	10666524	10666524	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
DUSP16	80824	hgsc.bcm.edu	36	12	12521585	12521585	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
PRICKLE1	144165	hgsc.bcm.edu	36	12	41140244	41140244	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
MLL2	9757	hgsc.bcm.edu	36	12	47702813	47702813	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
IGFBP6	3489	hgsc.bcm.edu	36	12	51780866	51780866	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
LEMD3	23592	hgsc.bcm.edu	36	12	63851110	63851110	+	Silent	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
KCNMB4	27345	hgsc.bcm.edu	36	12	69110619	69110619	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
PTPRR	5801	hgsc.bcm.edu	36	12	69341131	69341131	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
PTPRQ	374462	hgsc.bcm.edu	36	12	79386646	79386646	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
LRRIQ1	84125	hgsc.bcm.edu	36	12	83973689	83973689	+	Silent	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
LUM	4060	hgsc.bcm.edu	36	12	90026554	90026554	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
PAH	5053	hgsc.bcm.edu	36	12	101812761	101812761	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
STAB2	55576	hgsc.bcm.edu	36	12	102679209	102679209	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
DAO	1610	hgsc.bcm.edu	36	12	107810919	107810919	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
PTPN11	5781	hgsc.bcm.edu	36	12	111372593	111372593	+	Missense_Mutation	SNP	G	G	A	rs28933388	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
MED13L	23389	hgsc.bcm.edu	36	12	114908586	114908586	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
C12orf43	64897	hgsc.bcm.edu	36	12	119926643	119926643	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
TJP1	7082	hgsc.bcm.edu	36	15	27852813	27852813	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
MGA	23269	hgsc.bcm.edu	36	15	39829227	39829227	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
ZFP106	64397	hgsc.bcm.edu	36	15	40530257	40530257	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
TGM7	116179	hgsc.bcm.edu	36	15	41364383	41364383	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
SLC12A1	6557	hgsc.bcm.edu	36	15	46329097	46329097	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
TRPM7	54822	hgsc.bcm.edu	36	15	48723007	48723007	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
HERC1	8925	hgsc.bcm.edu	36	15	61751787	61751787	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
ADAMTS7	11173	hgsc.bcm.edu	36	15	76879851	76879851	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
TMC3	342125	hgsc.bcm.edu	36	15	79412500	79412500	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
LASS3	204219	hgsc.bcm.edu	36	15	98830675	98830675	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
MAP3K15	389840	hgsc.bcm.edu	36	X	19326301	19326301	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
ZNF182	7988	hgsc.bcm.edu	36	X	47721659	47721659	+	Silent	SNP	C	C	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
FOXR2	139628	hgsc.bcm.edu	36	X	55667521	55667521	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
OPHN1	4983	hgsc.bcm.edu	36	X	67348745	67348745	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
AWAT1	158833	hgsc.bcm.edu	36	X	69376479	69376479	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
PHKA1	5255	hgsc.bcm.edu	36	X	71772948	71772948	+	Silent	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
ITM2A	9452	hgsc.bcm.edu	36	X	78509318	78509318	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
PCDH19	57575	hgsc.bcm.edu	36	X	99549169	99549169	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
SLC6A14	11254	hgsc.bcm.edu	36	X	115491990	115491990	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
BCORL1	63035	hgsc.bcm.edu	36	X	128976923	128976923	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
MAGEC1	9947	hgsc.bcm.edu	36	X	140822643	140822643	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
AFF2	2334	hgsc.bcm.edu	36	X	147844901	147844901	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
L1CAM	3897	hgsc.bcm.edu	36	X	152789737	152789737	+	Silent	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
FLNA	2316	hgsc.bcm.edu	36	X	153236535	153236535	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
BRCC3	79184	hgsc.bcm.edu	36	X	153998196	153998196	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
TACC3	10460	hgsc.bcm.edu	36	4	1699371	1699371	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
ANAPC4	29945	hgsc.bcm.edu	36	4	25001688	25001688	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
STIM2	57620	hgsc.bcm.edu	36	4	26628487	26628487	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
N4BP2	55728	hgsc.bcm.edu	36	4	39799224	39799224	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
KIT	3815	hgsc.bcm.edu	36	4	55284526	55284526	+	Silent	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
KIT	3815	hgsc.bcm.edu	36	4	55286839	55286839	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
KIT	3815	hgsc.bcm.edu	36	4	55288374	55288374	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
KIT	3815	hgsc.bcm.edu	36	4	55290357	55290357	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
CEP135	9662	hgsc.bcm.edu	36	4	56572876	56572876	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
TMPRSS11F	389208	hgsc.bcm.edu	36	4	68647323	68647323	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
PTPN13	5783	hgsc.bcm.edu	36	4	87899222	87899222	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
CENPE	1062	hgsc.bcm.edu	36	4	104274453	104274453	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
EDNRA	1909	hgsc.bcm.edu	36	4	148683166	148683166	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
MAP9	79884	hgsc.bcm.edu	36	4	156513838	156513838	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
FSTL5	56884	hgsc.bcm.edu	36	4	163251947	163251947	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
SORBS2	8470	hgsc.bcm.edu	36	4	186785134	186785134	+	Silent	SNP	C	C	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
DDX1	1653	hgsc.bcm.edu	36	2	15677863	15677863	+	Silent	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
APOB	338	hgsc.bcm.edu	36	2	21085686	21085686	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
ITSN2	50618	hgsc.bcm.edu	36	2	24292481	24292481	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
PRKD3	23683	hgsc.bcm.edu	36	2	37370012	37370012	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
PRKD3	23683	hgsc.bcm.edu	36	2	37370087	37370087	+	Silent	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
MSH6	2956	hgsc.bcm.edu	36	2	47884136	47884136	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
CCT4	10575	hgsc.bcm.edu	36	2	61952835	61952835	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
TPRKB	51002	hgsc.bcm.edu	36	2	73815117	73815117	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
DOK1	1796	hgsc.bcm.edu	36	2	74636567	74636567	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
PTCD3	55037	hgsc.bcm.edu	36	2	86205640	86205640	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
MGAT5	4249	hgsc.bcm.edu	36	2	134922807	134922807	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
NEB	4703	hgsc.bcm.edu	36	2	152090761	152090761	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
SCN1A	6323	hgsc.bcm.edu	36	2	166556278	166556278	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
ITGA6	3655	hgsc.bcm.edu	36	2	173049405	173049405	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
HOXD3	3232	hgsc.bcm.edu	36	2	176742211	176742211	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
TTN	7273	hgsc.bcm.edu	36	2	179105687	179105687	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
TTN	7273	hgsc.bcm.edu	36	2	179116173	179116173	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
PLCL1	5334	hgsc.bcm.edu	36	2	198658507	198658507	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
ZDBF2	57683	hgsc.bcm.edu	36	2	206877807	206877807	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
TRIP12	9320	hgsc.bcm.edu	36	2	230358757	230358757	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
AGAP1	116987	hgsc.bcm.edu	36	2	236697319	236697319	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
LRRFIP1	9208	hgsc.bcm.edu	36	2	238292917	238292917	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
JAK2	3717	hgsc.bcm.edu	36	9	5068359	5068359	+	Silent	SNP	C	C	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
MPDZ	84708	hgsc.bcm.edu	36	9	13214503	13214503	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
FAM154A	158297	hgsc.bcm.edu	36	9	18931666	18931666	+	Silent	SNP	G	G	A	rs34769002	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
LINGO2	158038	hgsc.bcm.edu	36	9	27939585	27939585	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
AQP7	364	hgsc.bcm.edu	36	9	33375698	33375698	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
MELK	9833	hgsc.bcm.edu	36	9	36641768	36641768	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
RORB	6096	hgsc.bcm.edu	36	9	76476544	76476544	+	Silent	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
NTRK2	4915	hgsc.bcm.edu	36	9	86549724	86549724	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
PTCH1	5727	hgsc.bcm.edu	36	9	97270896	97270896	+	Silent	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
PTCH1	5727	hgsc.bcm.edu	36	9	97287926	97287926	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
NUP214	8021	hgsc.bcm.edu	36	9	133062877	133062877	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
NOTCH1	4851	hgsc.bcm.edu	36	9	138519176	138519176	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
SLC7A1	6541	hgsc.bcm.edu	36	13	28995438	28995438	+	Silent	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
FRY	10129	hgsc.bcm.edu	36	13	31733802	31733802	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
BRCA2	675	hgsc.bcm.edu	36	13	31866854	31866854	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
PCDH9	5101	hgsc.bcm.edu	36	13	66700513	66700513	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
C13orf40	0	hgsc.bcm.edu	36	13	102197375	102197375	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
NEBL	10529	hgsc.bcm.edu	36	10	21141816	21141816	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
ARMC4	55130	hgsc.bcm.edu	36	10	28268880	28268880	+	Silent	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
CUL2	8453	hgsc.bcm.edu	36	10	35389825	35389825	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
RET	5979	hgsc.bcm.edu	36	10	42937438	42937438	+	Silent	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
CCDC6	8030	hgsc.bcm.edu	36	10	61244426	61244426	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
JMJD1C	221037	hgsc.bcm.edu	36	10	64606169	64606169	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
JMJD1C	221037	hgsc.bcm.edu	36	10	64606170	64606170	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
PTEN	5728	hgsc.bcm.edu	36	10	89682920	89682920	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
PLCE1	51196	hgsc.bcm.edu	36	10	95780945	95780945	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
GFRA1	2674	hgsc.bcm.edu	36	10	117874814	117874814	+	Silent	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
INPP5F	22876	hgsc.bcm.edu	36	10	121576919	121576919	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
TCERG1L	256536	hgsc.bcm.edu	36	10	132855124	132855124	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
JAKMIP3	282973	hgsc.bcm.edu	36	10	133817282	133817282	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
RXFP3	51289	hgsc.bcm.edu	36	5	33973159	33973159	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
OSMR	9180	hgsc.bcm.edu	36	5	38968357	38968357	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
MAP1B	4131	hgsc.bcm.edu	36	5	71529142	71529142	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
APC	324	hgsc.bcm.edu	36	5	112202530	112202530	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
APC	324	hgsc.bcm.edu	36	5	112202642	112202642	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
APC	324	hgsc.bcm.edu	36	5	112203034	112203034	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
APC	324	hgsc.bcm.edu	36	5	112203141	112203141	+	Silent	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
APC	324	hgsc.bcm.edu	36	5	112203289	112203289	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
DMXL1	1657	hgsc.bcm.edu	36	5	118604050	118604050	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
PCDHA3	56145	hgsc.bcm.edu	36	5	140162821	140162821	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
GLRA1	2741	hgsc.bcm.edu	36	5	151188736	151188736	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
FAM153A	285596	hgsc.bcm.edu	36	5	177096204	177096204	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
RASGEF1C	255426	hgsc.bcm.edu	36	5	179497251	179497251	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
PLOD3	8985	hgsc.bcm.edu	36	7	100640093	100640093	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
RPS26	400156	hgsc.bcm.edu	36	12	54724168	54724168	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
WDR5	11091	hgsc.bcm.edu	36	9	136003229	136003229	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
AGL	178	hgsc.bcm.edu	36	1	100150615	100150616	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
THOC7	80145	hgsc.bcm.edu	36	3	63798732	63798733	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
MUC4	4585	hgsc.bcm.edu	36	3	196990687	196990734	+	In_Frame_Del	DEL	GCTGGTGACAGGAAGAGGGGTGCCGTGACCTGTGGACACTGAGGAAGC	GCTGGTGACAGGAAGAGGGGTGCCGTGACCTGTGGACACTGAGGAAGC	-	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	GCTGGTGACAGGAAGAGGGGTGCCGTGACCTGTGGACACTGAGGAAGC	GCTGGTGACAGGAAGAGGGGTGCCGTGACCTGTGGACACTGAGGAAGC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
MUC4	4585	hgsc.bcm.edu	36	3	196992981	196993028	+	In_Frame_Del	DEL	CTGAGGAAGGGCTAGTGACAGGAAGAGGCATGGTGTCACCTGTGGATA	CTGAGGAAGGGCTAGTGACAGGAAGAGGCATGGTGTCACCTGTGGATA	-	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	CTGAGGAAGGGCTAGTGACAGGAAGAGGCATGGTGTCACCTGTGGATA	CTGAGGAAGGGCTAGTGACAGGAAGAGGCATGGTGTCACCTGTGGATA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
APC	324	hgsc.bcm.edu	36	5	112203471	112203472	+	Frame_Shift_Ins	INS	-	-	GG	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
OR52A5	390054	hgsc.bcm.edu	36	11	5110255	5110255	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
KRT3	3850	hgsc.bcm.edu	36	12	51470244	51470255	+	In_Frame_Del	DEL	CCGCCGCCAAAT	CCGCCGCCAAAT	-	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	CCGCCGCCAAAT	CCGCCGCCAAAT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
SELPLG	6404	hgsc.bcm.edu	36	12	107541780	107541809	+	Frame_Shift_Del	DEL	GAGTGGTCTGTGCCTCCGTGGGCACTGGTT	GAGTGGTCTGTGCCTCCGTGGGCACTGGTT	-	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	GAGTGGTCTGTGCCTCCGTGGGCACTGGTT	GAGTGGTCTGTGCCTCCGTGGGCACTGGTT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
GCSH	2653	hgsc.bcm.edu	36	16	79675662	79675663	+	In_Frame_Ins	INS	-	-	CCT	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
GCSH	2653	hgsc.bcm.edu	36	16	79675663	79675664	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
CCDC144NL	339184	hgsc.bcm.edu	36	17	20709354	20709355	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
TXNDC2	84203	hgsc.bcm.edu	36	18	9877389	9877433	+	In_Frame_Del	DEL	GAAGCCATCCAGCCCAAGGAGGGTGACATCCCCAAGTCCCCAGAA	GAAGCCATCCAGCCCAAGGAGGGTGACATCCCCAAGTCCCCAGAA	-	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	GAAGCCATCCAGCCCAAGGAGGGTGACATCCCCAAGTCCCCAGAA	GAAGCCATCCAGCCCAAGGAGGGTGACATCCCCAAGTCCCCAGAA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
GNRH2	2797	hgsc.bcm.edu	36	20	2974345	2974346	+	Frame_Shift_Ins	INS	-	-	GCCCC	rs16996832	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
GGT1	2678	hgsc.bcm.edu	36	22	23353869	23353869	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
NEFH	4744	hgsc.bcm.edu	36	22	28215567	28215568	+	In_Frame_Ins	INS	-	-	AAGTCCCCTGAGAAGGCC	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
USP9X	8239	hgsc.bcm.edu	36	X	40960616	40960616	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-D5-6538-01A-11D-1719-10	TCGA-D5-6538-10A-01D-1719-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	9a12bec0-d01c-4e95-a9f8-ff6b96292692	b767cac2-d8a6-4c15-8a0a-b5e724f4473a
