Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID
GPNMB	10457	hgsc.bcm.edu	36	7	23260328	23260328	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
INHBA	3624	hgsc.bcm.edu	36	7	41696132	41696132	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
ACTL6B	51412	hgsc.bcm.edu	36	7	100091029	100091029	+	Silent	SNP	G	G	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
CTTNBP2	83992	hgsc.bcm.edu	36	7	117219846	117219846	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
HIPK2	28996	hgsc.bcm.edu	36	7	138919245	138919245	+	Silent	SNP	A	A	G	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
BRAF	673	hgsc.bcm.edu	36	7	140099624	140099624	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
MLL3	58508	hgsc.bcm.edu	36	7	151477166	151477166	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
MLL3	58508	hgsc.bcm.edu	36	7	151482109	151482109	+	Silent	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
RBCK1	10616	hgsc.bcm.edu	36	20	348074	348074	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
PAK7	57144	hgsc.bcm.edu	36	20	9508846	9508846	+	Silent	SNP	G	G	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
CD93	22918	hgsc.bcm.edu	36	20	23013821	23013821	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
IGLL1	3543	hgsc.bcm.edu	36	22	22245474	22245474	+	Silent	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
SMARCB1	6598	hgsc.bcm.edu	36	22	22475587	22475587	+	Silent	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
CHEK2	11200	hgsc.bcm.edu	36	22	27422946	27422946	+	Silent	SNP	A	A	G	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
TRIOBP	11078	hgsc.bcm.edu	36	22	36450000	36450000	+	Silent	SNP	A	A	G	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
MYH7	4625	hgsc.bcm.edu	36	14	22954764	22954764	+	Missense_Mutation	SNP	C	C	T	rs45464193	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
SIPA1L1	26037	hgsc.bcm.edu	36	14	71155263	71155263	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
NRXN3	9369	hgsc.bcm.edu	36	14	78504379	78504379	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
TSHR	7253	hgsc.bcm.edu	36	14	80679161	80679161	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
TSHR	7253	hgsc.bcm.edu	36	14	80679162	80679162	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
PPP4R4	57718	hgsc.bcm.edu	36	14	93782544	93782544	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
DICER1	23405	hgsc.bcm.edu	36	14	94630229	94630229	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
SEMA6B	10501	hgsc.bcm.edu	36	19	4509069	4509069	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
MUC16	94025	hgsc.bcm.edu	36	19	8935936	8935936	+	Silent	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
RASAL3	64926	hgsc.bcm.edu	36	19	15423668	15423668	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
MRPL34	64981	hgsc.bcm.edu	36	19	17278128	17278128	+	Silent	SNP	G	G	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
ZNF208	7757	hgsc.bcm.edu	36	19	21948757	21948757	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
CCNE1	898	hgsc.bcm.edu	36	19	34999986	34999986	+	Silent	SNP	C	C	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
PSENEN	55851	hgsc.bcm.edu	36	19	40929526	40929526	+	Silent	SNP	C	C	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
LTBP4	8425	hgsc.bcm.edu	36	19	45814747	45814747	+	Silent	SNP	G	G	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
ADCK4	79934	hgsc.bcm.edu	36	19	45893780	45893780	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
PSG4	5672	hgsc.bcm.edu	36	19	48391037	48391037	+	Missense_Mutation	SNP	C	C	T	rs707749	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
LRRC4B	94030	hgsc.bcm.edu	36	19	55713750	55713750	+	Silent	SNP	G	G	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
PXDNL	137902	hgsc.bcm.edu	36	8	52483903	52483903	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
ARFGEF1	10565	hgsc.bcm.edu	36	8	68366671	68366671	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
SLC30A8	169026	hgsc.bcm.edu	36	8	118239253	118239253	+	Silent	SNP	G	G	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
NOV	6134	hgsc.bcm.edu	36	8	120499649	120499649	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
CDC42	998	hgsc.bcm.edu	36	1	22277648	22277648	+	Silent	SNP	G	G	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
YBX1	4904	hgsc.bcm.edu	36	1	42939246	42939246	+	Silent	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
IL12RB2	3595	hgsc.bcm.edu	36	1	67560091	67560091	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
TNNI3K	51086	hgsc.bcm.edu	36	1	74677770	74677770	+	Silent	SNP	T	T	C	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
CCDC18	343099	hgsc.bcm.edu	36	1	93454868	93454868	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
PALMD	54873	hgsc.bcm.edu	36	1	99927155	99927155	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
GJA8	2703	hgsc.bcm.edu	36	1	145847606	145847606	+	Silent	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
IVL	3713	hgsc.bcm.edu	36	1	151149735	151149735	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
CD1E	913	hgsc.bcm.edu	36	1	156590800	156590800	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
ATP1A4	480	hgsc.bcm.edu	36	1	158395466	158395466	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
CD84	8832	hgsc.bcm.edu	36	1	158801956	158801956	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
ARHGAP30	257106	hgsc.bcm.edu	36	1	159288125	159288125	+	Silent	SNP	T	T	C	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
FCRLA	84824	hgsc.bcm.edu	36	1	159947764	159947764	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
RGS4	5999	hgsc.bcm.edu	36	1	161310852	161310852	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
HMCN1	83872	hgsc.bcm.edu	36	1	184306404	184306404	+	Silent	SNP	A	A	G	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
ASPM	259266	hgsc.bcm.edu	36	1	195337280	195337280	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
ZC3H11A	9877	hgsc.bcm.edu	36	1	202064084	202064084	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
NFASC	23114	hgsc.bcm.edu	36	1	203217753	203217753	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
USH2A	7399	hgsc.bcm.edu	36	1	214039056	214039056	+	Silent	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
OBSCN	84033	hgsc.bcm.edu	36	1	226511077	226511077	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
SIPA1L2	57568	hgsc.bcm.edu	36	1	230693243	230693243	+	Silent	SNP	C	C	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
FMN2	56776	hgsc.bcm.edu	36	1	238438543	238438543	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
WEE1	7465	hgsc.bcm.edu	36	11	9555326	9555326	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
ELP4	26610	hgsc.bcm.edu	36	11	31628240	31628240	+	Silent	SNP	A	A	G	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
AMBRA1	55626	hgsc.bcm.edu	36	11	46522144	46522144	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
AMBRA1	55626	hgsc.bcm.edu	36	11	46522145	46522145	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
OR8H2	390151	hgsc.bcm.edu	36	11	55629113	55629113	+	Missense_Mutation	SNP	A	A	G	rs61746549	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
SPCS2	9789	hgsc.bcm.edu	36	11	74354576	74354576	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
MMP3	4314	hgsc.bcm.edu	36	11	102215094	102215094	+	Silent	SNP	G	G	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
GRIA4	2893	hgsc.bcm.edu	36	11	105302711	105302711	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
ATM	472	hgsc.bcm.edu	36	11	107688401	107688401	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
ATM	472	hgsc.bcm.edu	36	11	107705118	107705118	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
TECTA	7007	hgsc.bcm.edu	36	11	120503730	120503730	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
FAM118B	79607	hgsc.bcm.edu	36	11	125625668	125625668	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
C6orf138	442213	hgsc.bcm.edu	36	6	47955106	47955106	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
TFAP2D	83741	hgsc.bcm.edu	36	6	50826952	50826952	+	Silent	SNP	T	T	C	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
CD109	135228	hgsc.bcm.edu	36	6	74573347	74573347	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
MDN1	23195	hgsc.bcm.edu	36	6	90442620	90442620	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
MDN1	23195	hgsc.bcm.edu	36	6	90556623	90556623	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
C6orf170	221322	hgsc.bcm.edu	36	6	121443616	121443616	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
C6orf170	221322	hgsc.bcm.edu	36	6	121680364	121680364	+	Silent	SNP	A	A	G	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
TNK1	8711	hgsc.bcm.edu	36	17	7228595	7228595	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
BRCA1	672	hgsc.bcm.edu	36	17	38509758	38509758	+	Silent	SNP	T	T	C	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
SLC25A39	51629	hgsc.bcm.edu	36	17	39755330	39755330	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
ITGA2B	3674	hgsc.bcm.edu	36	17	39819007	39819007	+	Silent	SNP	G	G	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
HOXB5	3215	hgsc.bcm.edu	36	17	44026035	44026035	+	Silent	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
MYST2	11143	hgsc.bcm.edu	36	17	45248245	45248245	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
PPM1E	22843	hgsc.bcm.edu	36	17	54397951	54397951	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
TLK2	11011	hgsc.bcm.edu	36	17	58004311	58004311	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
C21orf56	84221	hgsc.bcm.edu	36	21	46406026	46406026	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
CREBBP	1387	hgsc.bcm.edu	36	16	3772858	3772858	+	Silent	SNP	G	G	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
ZNF646	9726	hgsc.bcm.edu	36	16	30999219	30999219	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
RPRD1A	55197	hgsc.bcm.edu	36	18	31860957	31860957	+	Silent	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
FHOD3	91010	hgsc.bcm.edu	36	18	32576789	32576789	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
TCEB3B	51224	hgsc.bcm.edu	36	18	42814141	42814141	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
ATP9B	374868	hgsc.bcm.edu	36	18	74957468	74957468	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
EOMES	8320	hgsc.bcm.edu	36	3	27735905	27735905	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
DCBLD2	131566	hgsc.bcm.edu	36	3	100001353	100001353	+	Silent	SNP	T	T	C	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
KIAA1524	57650	hgsc.bcm.edu	36	3	109753798	109753798	+	Silent	SNP	T	T	C	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
VEPH1	79674	hgsc.bcm.edu	36	3	158628852	158628852	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
PIK3CA	5290	hgsc.bcm.edu	36	3	180399585	180399585	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
PIK3CA	5290	hgsc.bcm.edu	36	3	180399623	180399623	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
PIK3CA	5290	hgsc.bcm.edu	36	3	180418785	180418785	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
PIK3CA	5290	hgsc.bcm.edu	36	3	180434606	180434606	+	Silent	SNP	A	A	G	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
SOX2	6657	hgsc.bcm.edu	36	3	182913043	182913043	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
RTP1	132112	hgsc.bcm.edu	36	3	188400455	188400455	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
PIK3C2G	5288	hgsc.bcm.edu	36	12	18549502	18549502	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
WDR66	144406	hgsc.bcm.edu	36	12	120854166	120854166	+	Silent	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
DNAH10	196385	hgsc.bcm.edu	36	12	122918014	122918014	+	Silent	SNP	T	T	C	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
CHFR	55743	hgsc.bcm.edu	36	12	131943206	131943206	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
HERC2	8924	hgsc.bcm.edu	36	15	26167362	26167362	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
TMEM62	80021	hgsc.bcm.edu	36	15	41226041	41226041	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
MCTP2	55784	hgsc.bcm.edu	36	15	92689381	92689381	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
KDM6A	7403	hgsc.bcm.edu	36	X	44814155	44814155	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
SHROOM4	57477	hgsc.bcm.edu	36	X	50395015	50395015	+	Silent	SNP	G	G	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
ZMAT1	84460	hgsc.bcm.edu	36	X	101025269	101025269	+	Silent	SNP	G	G	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
VSIG1	340547	hgsc.bcm.edu	36	X	107196873	107196873	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
ARHGEF6	9459	hgsc.bcm.edu	36	X	135657387	135657387	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
GPR101	83550	hgsc.bcm.edu	36	X	135940734	135940734	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
EVC2	132884	hgsc.bcm.edu	36	4	5715820	5715820	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
SLIT2	9353	hgsc.bcm.edu	36	4	20139677	20139677	+	Silent	SNP	A	A	G	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
GPR125	166647	hgsc.bcm.edu	36	4	22049013	22049013	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
NFXL1	152518	hgsc.bcm.edu	36	4	47593388	47593388	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
KIT	3815	hgsc.bcm.edu	36	4	55286889	55286889	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
UGT2B11	10720	hgsc.bcm.edu	36	4	70114744	70114744	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
FAM190A	0	hgsc.bcm.edu	36	4	91540243	91540243	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
FAT4	79633	hgsc.bcm.edu	36	4	126460447	126460447	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
FAT4	79633	hgsc.bcm.edu	36	4	126592468	126592468	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
GAB1	128869	hgsc.bcm.edu	36	4	144556255	144556255	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
MARCH1	55016	hgsc.bcm.edu	36	4	164726481	164726481	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
KLKB1	3818	hgsc.bcm.edu	36	4	187414210	187414210	+	Silent	SNP	C	C	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
KCNS3	3790	hgsc.bcm.edu	36	2	17976259	17976259	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
C2orf44	80304	hgsc.bcm.edu	36	2	24115308	24115308	+	Silent	SNP	A	A	G	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
EFEMP1	2202	hgsc.bcm.edu	36	2	55951667	55951667	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
CLEC4F	165530	hgsc.bcm.edu	36	2	70896853	70896853	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
TPRKB	51002	hgsc.bcm.edu	36	2	73810631	73810631	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
ADRA2B	151	hgsc.bcm.edu	36	2	96145322	96145322	+	Silent	SNP	C	C	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
XIRP2	129446	hgsc.bcm.edu	36	2	167700807	167700807	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
SP3	6670	hgsc.bcm.edu	36	2	174528838	174528838	+	Silent	SNP	G	G	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
TTN	7273	hgsc.bcm.edu	36	2	179103896	179103896	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
TTN	7273	hgsc.bcm.edu	36	2	179142328	179142328	+	Silent	SNP	A	A	G	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
TTN	7273	hgsc.bcm.edu	36	2	179143637	179143637	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
C2orf67	151050	hgsc.bcm.edu	36	2	210648571	210648571	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
ERBB4	2066	hgsc.bcm.edu	36	2	212275076	212275076	+	Silent	SNP	C	C	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
HDLBP	3069	hgsc.bcm.edu	36	2	241818910	241818910	+	Silent	SNP	G	G	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
FREM1	158326	hgsc.bcm.edu	36	9	14787515	14787515	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
TAF1L	138474	hgsc.bcm.edu	36	9	32624260	32624260	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
FAM163B	642968	hgsc.bcm.edu	36	9	135434191	135434191	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
ENTPD2	954	hgsc.bcm.edu	36	9	139064192	139064192	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
HTR2A	3356	hgsc.bcm.edu	36	13	46307197	46307197	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
RB1	5925	hgsc.bcm.edu	36	13	47779503	47779503	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
LPAR6	0	hgsc.bcm.edu	36	13	47883901	47883901	+	Silent	SNP	G	G	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
SYNPO2L	79933	hgsc.bcm.edu	36	10	75080682	75080682	+	Silent	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
DLG5	9231	hgsc.bcm.edu	36	10	79251228	79251228	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
PTEN	5728	hgsc.bcm.edu	36	10	89643846	89643846	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
PTEN	5728	hgsc.bcm.edu	36	10	89710691	89710691	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
PTEN	5728	hgsc.bcm.edu	36	10	89710724	89710724	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
PTEN	5728	hgsc.bcm.edu	36	10	89710843	89710843	+	Silent	SNP	T	T	C	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
LOXL4	84171	hgsc.bcm.edu	36	10	100012598	100012598	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
CCDC147	159686	hgsc.bcm.edu	36	10	106118299	106118299	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
EIF3A	8661	hgsc.bcm.edu	36	10	120791882	120791882	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
FAM175B	23172	hgsc.bcm.edu	36	10	126485434	126485434	+	Silent	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
ADAMTS16	170690	hgsc.bcm.edu	36	5	5235218	5235218	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
CTNND2	1501	hgsc.bcm.edu	36	5	11026729	11026729	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
DNAH5	1767	hgsc.bcm.edu	36	5	13860741	13860741	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
CDH9	1007	hgsc.bcm.edu	36	5	26925728	26925728	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
FBXO4	26272	hgsc.bcm.edu	36	5	41961335	41961335	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
PLK2	10769	hgsc.bcm.edu	36	5	57790673	57790673	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
ERAP1	51752	hgsc.bcm.edu	36	5	96147252	96147252	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
MAN2A1	4124	hgsc.bcm.edu	36	5	109148488	109148488	+	Silent	SNP	A	A	G	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
APC	324	hgsc.bcm.edu	36	5	112190790	112190790	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
PCDHA3	56145	hgsc.bcm.edu	36	5	140162501	140162501	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
PCDHA13	56136	hgsc.bcm.edu	36	5	140242799	140242799	+	Silent	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
PCDHGB3	56102	hgsc.bcm.edu	36	5	140730615	140730615	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
ARSI	340075	hgsc.bcm.edu	36	5	149657580	149657580	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
SLIT3	6586	hgsc.bcm.edu	36	5	168182854	168182854	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
NSD1	64324	hgsc.bcm.edu	36	5	176570802	176570802	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
PPP6R3	0	hgsc.bcm.edu	36	11	68093942	68093942	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
HERC1	8925	hgsc.bcm.edu	36	15	61748951	61748951	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
TBX19	9095	hgsc.bcm.edu	36	1	166548644	166548644	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
CEP350	9857	hgsc.bcm.edu	36	1	178256213	178256218	+	In_Frame_Del	DEL	AGAAGA	AGAAGA	-	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	AGAAGA	AGAAGA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
OR2T35	403244	hgsc.bcm.edu	36	1	246868547	246868550	+	Frame_Shift_Del	DEL	AGAT	AGAT	-	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	AGAT	AGAT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
ADAMTS9	56999	hgsc.bcm.edu	36	3	64493949	64493949	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
ZNF717	100131827	hgsc.bcm.edu	36	3	75869005	75869013	+	In_Frame_Del	DEL	CTACATTCT	CTACATTCT	-	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	CTACATTCT	CTACATTCT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
MUC4	4585	hgsc.bcm.edu	36	3	196993221	196993316	+	In_Frame_Del	DEL	CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA	CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA	-	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA	CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
N4BP2	55728	hgsc.bcm.edu	36	4	39781134	39781134	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
RP1L1	94137	hgsc.bcm.edu	36	8	10505081	10505083	+	In_Frame_Del	DEL	CTC	CTC	-	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	CTC	CTC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
RP1L1	94137	hgsc.bcm.edu	36	8	10505091	10505096	+	In_Frame_Del	DEL	TCCTTC	TCCTTC	-	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	TCCTTC	TCCTTC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
RP1L1	94137	hgsc.bcm.edu	36	8	10505116	10505117	+	In_Frame_Ins	INS	-	-	CCC	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
IARS	3376	hgsc.bcm.edu	36	9	94079985	94079986	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
OR6C76	390326	hgsc.bcm.edu	36	12	54107226	54107226	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
VPS36	51028	hgsc.bcm.edu	36	13	51905826	51905827	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
KRTAP4-1	85285	hgsc.bcm.edu	36	17	36594322	36594378	+	Frame_Shift_Del	DEL	CGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG	CGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG	-	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	CGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG	CGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
USP36	57602	hgsc.bcm.edu	36	17	74310144	74310149	+	In_Frame_Del	DEL	TTTTTC	TTTTTC	-	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	TTTTTC	TTTTTC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
TGIF1	7050	hgsc.bcm.edu	36	18	3446403	3446418	+	Frame_Shift_Del	DEL	TTCCCTTGGACCTTTC	TTCCCTTGGACCTTTC	-	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	TTCCCTTGGACCTTTC	TTCCCTTGGACCTTTC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
TXNDC2	84203	hgsc.bcm.edu	36	18	9877389	9877433	+	In_Frame_Del	DEL	GAAGCCATCCAGCCCAAGGAGGGTGACATCCCCAAGTCCCCAGAA	GAAGCCATCCAGCCCAAGGAGGGTGACATCCCCAAGTCCCCAGAA	-	novel	unknown	TCGA-DM-A28C-01A-11D-A16V-10	TCGA-DM-A28C-10A-01D-A16V-10	GAAGCCATCCAGCCCAAGGAGGGTGACATCCCCAAGTCCCCAGAA	GAAGCCATCCAGCCCAAGGAGGGTGACATCCCCAAGTCCCCAGAA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a75e6e54-761a-4eee-9619-1da578a3c7a0	45531413-169f-4337-834e-dec2f3548614
