Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID
MIOS	54468	hgsc.bcm.edu	36	7	7589297	7589297	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
THSD7A	221981	hgsc.bcm.edu	36	7	11642597	11642597	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
GLI3	2737	hgsc.bcm.edu	36	7	41970590	41970590	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
PKD1L1	168507	hgsc.bcm.edu	36	7	47904184	47904184	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
POM121L12	285877	hgsc.bcm.edu	36	7	53071452	53071452	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
FZD9	8326	hgsc.bcm.edu	36	7	72486634	72486634	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
AKAP9	10142	hgsc.bcm.edu	36	7	91564099	91564099	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
TRRAP	8295	hgsc.bcm.edu	36	7	98430193	98430193	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
COG5	10466	hgsc.bcm.edu	36	7	106752153	106752153	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
MET	8731	hgsc.bcm.edu	36	7	116210651	116210651	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
CLEC2L	154790	hgsc.bcm.edu	36	7	138875747	138875747	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
BRAF	673	hgsc.bcm.edu	36	7	140099574	140099574	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
EPHB6	2051	hgsc.bcm.edu	36	7	142276856	142276856	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
SSPO	23145	hgsc.bcm.edu	36	7	149113181	149113181	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
LRRC61	65999	hgsc.bcm.edu	36	7	149665117	149665117	+	Silent	SNP	T	T	C	rs3735170	byCluster;byFrequency;byHapMap	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
ABCF2	10061	hgsc.bcm.edu	36	7	150551961	150551961	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
KIAA1755	85449	hgsc.bcm.edu	36	20	36279217	36279217	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
TP53TG5	27296	hgsc.bcm.edu	36	20	43437572	43437572	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
NPEPL1	79716	hgsc.bcm.edu	36	20	56722424	56722424	+	Missense_Mutation	SNP	C	C	T	rs35104993	byCluster;byFrequency	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
SS18L1	26039	hgsc.bcm.edu	36	20	60171957	60171957	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
LAMA5	3911	hgsc.bcm.edu	36	20	60332115	60332115	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
LAMA5	3911	hgsc.bcm.edu	36	20	60342776	60342776	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
DIDO1	11083	hgsc.bcm.edu	36	20	60983853	60983853	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
COL20A1	57642	hgsc.bcm.edu	36	20	61427931	61427931	+	Silent	SNP	A	A	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
ZDHHC8	29801	hgsc.bcm.edu	36	22	18514739	18514739	+	Silent	SNP	C	C	T	rs9605070	by2Hit2Allele;byCluster	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
YDJC	150223	hgsc.bcm.edu	36	22	20314205	20314205	+	Silent	SNP	A	A	G	rs710177	byCluster;byFrequency	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
YPEL1	29799	hgsc.bcm.edu	36	22	20394927	20394927	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
ADRBK2	157	hgsc.bcm.edu	36	22	24421119	24421119	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
BPIL2	254240	hgsc.bcm.edu	36	22	31183314	31183314	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
MIA2	117153	hgsc.bcm.edu	36	14	38786839	38786839	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
C14orf169	79697	hgsc.bcm.edu	36	14	73029156	73029156	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
TSHR	7253	hgsc.bcm.edu	36	14	80680046	80680046	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
PRIMA1	145270	hgsc.bcm.edu	36	14	93315405	93315405	+	Silent	SNP	C	C	T	rs4900195	by2Hit2Allele;byCluster	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
POLRMT	5442	hgsc.bcm.edu	36	19	573336	573336	+	Missense_Mutation	SNP	T	T	G	rs2238549	by2Hit2Allele;byCluster;byFrequency	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
SPPL2B	56928	hgsc.bcm.edu	36	19	2295022	2295022	+	Missense_Mutation	SNP	G	G	A	rs1128392	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
KRI1	65095	hgsc.bcm.edu	36	19	10537423	10537423	+	Silent	SNP	G	G	A	rs3745245	byCluster;byFrequency	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
DNM2	1785	hgsc.bcm.edu	36	19	10767754	10767754	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
RGL3	57139	hgsc.bcm.edu	36	19	11388625	11388625	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
BEST2	54831	hgsc.bcm.edu	36	19	12727196	12727196	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
CYP4F12	66002	hgsc.bcm.edu	36	19	15668034	15668034	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
KIAA1683	80726	hgsc.bcm.edu	36	19	18238048	18238048	+	Silent	SNP	C	C	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
ZNF676	163223	hgsc.bcm.edu	36	19	22155489	22155489	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
CYP2A7	1549	hgsc.bcm.edu	36	19	46078367	46078367	+	Missense_Mutation	SNP	G	G	A	rs58798281	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
ZNF574	64763	hgsc.bcm.edu	36	19	47275089	47275089	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
ZNF574	64763	hgsc.bcm.edu	36	19	47276801	47276801	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
ZNF234	10780	hgsc.bcm.edu	36	19	49344810	49344810	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
LILRA2	11027	hgsc.bcm.edu	36	19	59790528	59790528	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
CCDC106	29903	hgsc.bcm.edu	36	19	60854493	60854493	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
ZNF471	57573	hgsc.bcm.edu	36	19	61728330	61728330	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
ZNF154	7710	hgsc.bcm.edu	36	19	62908064	62908064	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
SLC27A5	10998	hgsc.bcm.edu	36	19	63703804	63703804	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
CSMD1	64478	hgsc.bcm.edu	36	8	2795165	2795165	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
NEIL2	252969	hgsc.bcm.edu	36	8	11674856	11674856	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
FGF17	8822	hgsc.bcm.edu	36	8	21959585	21959585	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
ESCO2	157570	hgsc.bcm.edu	36	8	27706167	27706167	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
PRKDC	5591	hgsc.bcm.edu	36	8	48968371	48968371	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
XKR4	114786	hgsc.bcm.edu	36	8	56598415	56598415	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
CA3	761	hgsc.bcm.edu	36	8	86545656	86545656	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
RUNX1T1	862	hgsc.bcm.edu	36	8	93073238	93073238	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
LAPTM4B	55353	hgsc.bcm.edu	36	8	98857437	98857437	+	Silent	SNP	G	G	T	rs2449508	byCluster;byFrequency;byHapMap	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
TNFRSF11B	4982	hgsc.bcm.edu	36	8	120033233	120033233	+	Missense_Mutation	SNP	G	G	C	rs2073618	by2Hit2Allele;byCluster;byFrequency;byHapMap;byOtherPop	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
COL14A1	7373	hgsc.bcm.edu	36	8	121391458	121391458	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
GRINA	2907	hgsc.bcm.edu	36	8	145137634	145137634	+	Silent	SNP	A	A	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
CDK11B	0	hgsc.bcm.edu	36	1	1561704	1561704	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
RUNX3	864	hgsc.bcm.edu	36	1	25118336	25118336	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
SDC3	9672	hgsc.bcm.edu	36	1	31118745	31118745	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
CSMD2	114784	hgsc.bcm.edu	36	1	33977508	33977508	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
KDM4A	9682	hgsc.bcm.edu	36	1	43893854	43893854	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
DPH2	1802	hgsc.bcm.edu	36	1	44208442	44208442	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
CYP4X1	260293	hgsc.bcm.edu	36	1	47284794	47284794	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
ZCCHC11	23318	hgsc.bcm.edu	36	1	52763942	52763942	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
SLC44A3	126969	hgsc.bcm.edu	36	1	95083514	95083514	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
AGL	178	hgsc.bcm.edu	36	1	100115828	100115828	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
GPR61	83873	hgsc.bcm.edu	36	1	109887721	109887721	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
KCNC4	3749	hgsc.bcm.edu	36	1	110556023	110556023	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
CTTNBP2NL	55917	hgsc.bcm.edu	36	1	112801218	112801218	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
RSBN1	54665	hgsc.bcm.edu	36	1	114156465	114156465	+	Silent	SNP	T	T	G	rs3789604	byCluster;byFrequency;byHapMap	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
IGSF3	3321	hgsc.bcm.edu	36	1	116944391	116944391	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
FLG	2312	hgsc.bcm.edu	36	1	150547057	150547057	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
FLG2	388698	hgsc.bcm.edu	36	1	150594291	150594291	+	Silent	SNP	C	C	T	rs12738471	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
DENND4B	9909	hgsc.bcm.edu	36	1	152173921	152173921	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
PVRL4	81607	hgsc.bcm.edu	36	1	159310671	159310671	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
LHX4	89884	hgsc.bcm.edu	36	1	178507690	178507690	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
CHIT1	1118	hgsc.bcm.edu	36	1	201459266	201459266	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
PLXNA2	5362	hgsc.bcm.edu	36	1	206278436	206278436	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
TMEM206	55248	hgsc.bcm.edu	36	1	210605226	210605226	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
PSEN2	5664	hgsc.bcm.edu	36	1	225139919	225139919	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
RYR2	6262	hgsc.bcm.edu	36	1	236060499	236060499	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
FMN2	56776	hgsc.bcm.edu	36	1	238437621	238437621	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
FMN2	56776	hgsc.bcm.edu	36	1	238438107	238438107	+	Silent	SNP	A	A	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
NLRP6	171389	hgsc.bcm.edu	36	11	270790	270790	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
PHRF1	57661	hgsc.bcm.edu	36	11	599068	599068	+	Silent	SNP	G	G	A	rs7928902	byCluster	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
EFCAB4A	283229	hgsc.bcm.edu	36	11	820670	820670	+	Missense_Mutation	SNP	G	G	T	rs4075289	by2Hit2Allele;byCluster;byFrequency;byHapMap	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
KRTAP5-5	440051	hgsc.bcm.edu	36	11	1607695	1607695	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
RRP8	23378	hgsc.bcm.edu	36	11	6578330	6578330	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
MICAL2	9645	hgsc.bcm.edu	36	11	12237962	12237962	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
RRAS2	22800	hgsc.bcm.edu	36	11	14259752	14259752	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
LDHA	3939	hgsc.bcm.edu	36	11	18381850	18381850	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
PTPN5	84867	hgsc.bcm.edu	36	11	18721498	18721498	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
BDNF	627	hgsc.bcm.edu	36	11	27652339	27652339	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
SLC39A13	91252	hgsc.bcm.edu	36	11	47391592	47391592	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
CD6	923	hgsc.bcm.edu	36	11	60533649	60533649	+	Missense_Mutation	SNP	G	G	A	rs12360861	byCluster;byFrequency	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
INCENP	3619	hgsc.bcm.edu	36	11	61653935	61653935	+	Silent	SNP	C	C	T	rs1675133	by2Hit2Allele;byCluster;byFrequency;byHapMap	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
C11orf95	0	hgsc.bcm.edu	36	11	63290098	63290098	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
UNC93B1	81622	hgsc.bcm.edu	36	11	67521739	67521739	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
ALDH3B1	221	hgsc.bcm.edu	36	11	67545871	67545871	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
MAML2	84441	hgsc.bcm.edu	36	11	95465055	95465055	+	Silent	SNP	C	C	T	rs61901862	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
HTR3B	9177	hgsc.bcm.edu	36	11	113320551	113320551	+	Silent	SNP	T	T	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
MPZL3	196264	hgsc.bcm.edu	36	11	117613146	117613146	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
ROBO4	54538	hgsc.bcm.edu	36	11	124271740	124271740	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
CHEK1	1111	hgsc.bcm.edu	36	11	125008323	125008323	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
IGSF9B	22997	hgsc.bcm.edu	36	11	133311218	133311218	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
ACOT13	55856	hgsc.bcm.edu	36	6	24806091	24806091	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
OR2B3	442184	hgsc.bcm.edu	36	6	29162957	29162957	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
MUC21	394263	hgsc.bcm.edu	36	6	31062849	31062849	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
DAXX	1616	hgsc.bcm.edu	36	6	33395423	33395423	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
TULP1	7287	hgsc.bcm.edu	36	6	35587987	35587987	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
C6orf222	389384	hgsc.bcm.edu	36	6	36406029	36406029	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
TFEB	7942	hgsc.bcm.edu	36	6	41766867	41766867	+	Silent	SNP	C	C	T	rs1015149	by2Hit2Allele;byCluster;byFrequency;byHapMap;byOtherPop	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
MYO6	4646	hgsc.bcm.edu	36	6	76584083	76584083	+	Silent	SNP	C	C	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
MRAP2	112609	hgsc.bcm.edu	36	6	84855878	84855878	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
LATS1	9113	hgsc.bcm.edu	36	6	150024967	150024967	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
AKAP12	9590	hgsc.bcm.edu	36	6	151713917	151713917	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
TCP1	6950	hgsc.bcm.edu	36	6	160129090	160129090	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
HGC6.3	100128124	hgsc.bcm.edu	36	6	168119952	168119952	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
HGC6.3	100128124	hgsc.bcm.edu	36	6	168120081	168120081	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
HGC6.3	100128124	hgsc.bcm.edu	36	6	168120111	168120111	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
FRMD1	79981	hgsc.bcm.edu	36	6	168202694	168202694	+	Missense_Mutation	SNP	G	G	C	rs1548349	by2Hit2Allele;byCluster;byFrequency;byHapMap;byOtherPop	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
YWHAE	7531	hgsc.bcm.edu	36	17	1211243	1211243	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
TP53	7157	hgsc.bcm.edu	36	17	7517819	7517819	+	Missense_Mutation	SNP	G	G	A	rs28934574	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
NF1	4763	hgsc.bcm.edu	36	17	26586873	26586873	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
KRTAP4-8	728224	hgsc.bcm.edu	36	17	36507668	36507668	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
XYLT2	64132	hgsc.bcm.edu	36	17	45792546	45792546	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
CACNA1G	8913	hgsc.bcm.edu	36	17	46033508	46033508	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
ABCA8	10351	hgsc.bcm.edu	36	17	64383458	64383458	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
LLGL2	3993	hgsc.bcm.edu	36	17	71079441	71079441	+	Missense_Mutation	SNP	C	C	T	rs1661715	by2Hit2Allele;byCluster;byFrequency;byHapMap	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
TBCD	6904	hgsc.bcm.edu	36	17	78303388	78303388	+	Silent	SNP	C	C	T	rs11550067	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
SAMSN1	64092	hgsc.bcm.edu	36	21	14811170	14811170	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
C21orf29	54084	hgsc.bcm.edu	36	21	44749134	44749134	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
KRTAP10-11	386678	hgsc.bcm.edu	36	21	44891350	44891350	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
CHTF18	63922	hgsc.bcm.edu	36	16	787846	787846	+	Missense_Mutation	SNP	C	C	T	rs2294453	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
TBL3	10607	hgsc.bcm.edu	36	16	1965190	1965190	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
ZNF500	26048	hgsc.bcm.edu	36	16	4742839	4742839	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
RABEP2	79874	hgsc.bcm.edu	36	16	28833523	28833523	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
SRCAP	10847	hgsc.bcm.edu	36	16	30642632	30642632	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
CALB2	794	hgsc.bcm.edu	36	16	69969092	69969092	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
DHX38	9785	hgsc.bcm.edu	36	16	70692586	70692586	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
ZFHX3	463	hgsc.bcm.edu	36	16	71551332	71551332	+	Missense_Mutation	SNP	A	A	C	rs7193297	by2Hit2Allele;byCluster;byFrequency;byHapMap	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
MPHOSPH6	10200	hgsc.bcm.edu	36	16	80761243	80761243	+	Silent	SNP	T	T	C	rs1134847	byCluster;byFrequency;byHapMap	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
MPHOSPH6	10200	hgsc.bcm.edu	36	16	80761269	80761269	+	Silent	SNP	G	G	T	rs2303261	by2Hit2Allele;byCluster	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
VHL	7428	hgsc.bcm.edu	36	3	10163274	10163274	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
OXSM	54995	hgsc.bcm.edu	36	3	25807831	25807831	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
TGFBR2	7048	hgsc.bcm.edu	36	3	30704952	30704952	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
LRRFIP2	9209	hgsc.bcm.edu	36	3	37126158	37126158	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
ITGA9	3680	hgsc.bcm.edu	36	3	37758313	37758313	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
ACVR2B	93	hgsc.bcm.edu	36	3	38498734	38498734	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
CCR1	1230	hgsc.bcm.edu	36	3	46219757	46219757	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
COL7A1	1294	hgsc.bcm.edu	36	3	48588086	48588086	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
GPX1	2876	hgsc.bcm.edu	36	3	49370486	49370486	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
MST1	6789	hgsc.bcm.edu	36	3	49698383	49698383	+	Silent	SNP	T	T	C	rs4052580	by2Hit2Allele	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
ZNF717	100131827	hgsc.bcm.edu	36	3	75869970	75869970	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
KIAA2018	205717	hgsc.bcm.edu	36	3	114858809	114858809	+	Silent	SNP	C	C	T	rs62265538	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
C3orf30	152405	hgsc.bcm.edu	36	3	120348299	120348299	+	Silent	SNP	C	C	T	rs10934483	by2Hit2Allele;byCluster;byFrequency;byHapMap	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
PTPLB	201562	hgsc.bcm.edu	36	3	124786511	124786511	+	Silent	SNP	G	G	C	rs1271004	by2Hit2Allele;byCluster	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
PTPLB	201562	hgsc.bcm.edu	36	3	124786514	124786514	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
IFT122	55764	hgsc.bcm.edu	36	3	130697059	130697059	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
BCHE	590	hgsc.bcm.edu	36	3	167030867	167030867	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
PIK3CA	5290	hgsc.bcm.edu	36	3	180434749	180434749	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
HTR3E	285242	hgsc.bcm.edu	36	3	185306993	185306993	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
KNG1	3827	hgsc.bcm.edu	36	3	187927749	187927749	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
ITGA7	3679	hgsc.bcm.edu	36	12	54378949	54378949	+	Silent	SNP	C	C	T	rs3847675	byCluster;byFrequency	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
RBMS2	5939	hgsc.bcm.edu	36	12	55261886	55261886	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
MDM2	4193	hgsc.bcm.edu	36	12	67516739	67516739	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
NAV3	89795	hgsc.bcm.edu	36	12	76912757	76912757	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
VSIG10	0	hgsc.bcm.edu	36	12	117004445	117004445	+	Silent	SNP	G	G	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
MKRN3	7681	hgsc.bcm.edu	36	15	21362423	21362423	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
RFX7	64864	hgsc.bcm.edu	36	15	54172925	54172925	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
ANXA2	302	hgsc.bcm.edu	36	15	58477381	58477381	+	Silent	SNP	A	A	G	rs12904657	byFrequency	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
CSPG4	1464	hgsc.bcm.edu	36	15	73769330	73769330	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
CSPG4	1464	hgsc.bcm.edu	36	15	73769620	73769620	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
VCX2	51480	hgsc.bcm.edu	36	X	8098182	8098182	+	Missense_Mutation	SNP	A	A	G	rs41305169	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
MAGEB4	4115	hgsc.bcm.edu	36	X	30170419	30170419	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
FAM47A	158724	hgsc.bcm.edu	36	X	34058798	34058798	+	Missense_Mutation	SNP	C	C	G	rs5973088	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
FAM47B	170062	hgsc.bcm.edu	36	X	34871453	34871453	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
FAM47C	442444	hgsc.bcm.edu	36	X	36937393	36937393	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
LANCL3	347404	hgsc.bcm.edu	36	X	37316148	37316148	+	Missense_Mutation	SNP	G	G	C	rs35466136	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
SHROOM4	57477	hgsc.bcm.edu	36	X	50367492	50367492	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
SHROOM4	57477	hgsc.bcm.edu	36	X	50367497	50367497	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
SHROOM4	57477	hgsc.bcm.edu	36	X	50367498	50367498	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
SHROOM4	57477	hgsc.bcm.edu	36	X	50367518	50367518	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
ARHGEF9	23229	hgsc.bcm.edu	36	X	62802511	62802511	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
TEX11	56159	hgsc.bcm.edu	36	X	69742002	69742002	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
IRS4	8471	hgsc.bcm.edu	36	X	107865919	107865919	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
SPANXN2	494119	hgsc.bcm.edu	36	X	142623125	142623125	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
HCFC1	3054	hgsc.bcm.edu	36	X	152873554	152873554	+	Missense_Mutation	SNP	A	A	G	rs1051152	by2Hit2Allele;byCluster;byFrequency	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
ZNF518B	85460	hgsc.bcm.edu	36	4	10056424	10056424	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
SPINK2	6691	hgsc.bcm.edu	36	4	57372626	57372626	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
DSPP	1834	hgsc.bcm.edu	36	4	88756330	88756330	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
ABCG2	9429	hgsc.bcm.edu	36	4	89258420	89258420	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
FBXW7	55294	hgsc.bcm.edu	36	4	153463635	153463635	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
DCHS2	54798	hgsc.bcm.edu	36	4	155375827	155375827	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
TUBB4Q	56604	hgsc.bcm.edu	36	4	191142970	191142970	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
TPO	7173	hgsc.bcm.edu	36	2	1476663	1476663	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
ZNF513	130557	hgsc.bcm.edu	36	2	27455347	27455347	+	Missense_Mutation	SNP	G	G	A	rs35554630	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
EHD3	30845	hgsc.bcm.edu	36	2	31337251	31337251	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
LTBP1	4052	hgsc.bcm.edu	36	2	33442057	33442057	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
TCF7L1	83439	hgsc.bcm.edu	36	2	85389839	85389839	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
CYP27C1	339761	hgsc.bcm.edu	36	2	127667321	127667321	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
RAB3GAP1	22930	hgsc.bcm.edu	36	2	135600648	135600648	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
ACVR1	90	hgsc.bcm.edu	36	2	158335235	158335235	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
TTN	7273	hgsc.bcm.edu	36	2	179116174	179116174	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
TTN	7273	hgsc.bcm.edu	36	2	179190446	179190446	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
FSIP2	285135	hgsc.bcm.edu	36	2	186380078	186380078	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
DNAH7	56171	hgsc.bcm.edu	36	2	196621287	196621287	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
SGOL2	151246	hgsc.bcm.edu	36	2	201148407	201148407	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
USP37	57695	hgsc.bcm.edu	36	2	219039114	219039114	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
CHPF	79586	hgsc.bcm.edu	36	2	220112463	220112463	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
COL4A3	1285	hgsc.bcm.edu	36	2	227836900	227836900	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
GLDC	2731	hgsc.bcm.edu	36	9	6548671	6548671	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
NPR2	4882	hgsc.bcm.edu	36	9	35791945	35791945	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
GNE	10020	hgsc.bcm.edu	36	9	36236115	36236115	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
DAPK1	1612	hgsc.bcm.edu	36	9	89491362	89491362	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
BICD2	23299	hgsc.bcm.edu	36	9	94524820	94524820	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
WNK2	65268	hgsc.bcm.edu	36	9	95061244	95061244	+	Missense_Mutation	SNP	C	C	T	rs45534637	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
GABBR2	9568	hgsc.bcm.edu	36	9	100113299	100113299	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
GARNL3	84253	hgsc.bcm.edu	36	9	129115644	129115644	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
NBEA	26960	hgsc.bcm.edu	36	13	35121948	35121948	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
ZNF828	283489	hgsc.bcm.edu	36	13	114108327	114108327	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
PLXDC2	84898	hgsc.bcm.edu	36	10	20397168	20397168	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
GPRIN2	9721	hgsc.bcm.edu	36	10	46419036	46419036	+	Silent	SNP	C	C	T	rs4925989	by2Hit2Allele;byCluster	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
MAPK8	5599	hgsc.bcm.edu	36	10	49298300	49298300	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
WDFY4	57705	hgsc.bcm.edu	36	10	49695402	49695402	+	Missense_Mutation	SNP	G	G	A	rs7097397	by2Hit2Allele;byCluster;byFrequency;byHapMap	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
CCDC6	8030	hgsc.bcm.edu	36	10	61222771	61222771	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
CHUK	1147	hgsc.bcm.edu	36	10	101970410	101970410	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
PSD	79176	hgsc.bcm.edu	36	10	104166574	104166574	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
GSTO1	9446	hgsc.bcm.edu	36	10	106012824	106012824	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
EBF3	253738	hgsc.bcm.edu	36	10	131529119	131529119	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
NKX6-2	84504	hgsc.bcm.edu	36	10	134448550	134448550	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
PIK3R1	5295	hgsc.bcm.edu	36	5	67625370	67625370	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
NAIP	4671	hgsc.bcm.edu	36	5	70344085	70344085	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
ERAP1	51752	hgsc.bcm.edu	36	5	96156575	96156575	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
APC	324	hgsc.bcm.edu	36	5	112202532	112202532	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
APC	324	hgsc.bcm.edu	36	5	112203170	112203170	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
PCDHB3	56132	hgsc.bcm.edu	36	5	140460766	140460766	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
PCDHB16	57717	hgsc.bcm.edu	36	5	140544554	140544554	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
PCDHGA8	9708	hgsc.bcm.edu	36	5	140754500	140754500	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
MAPK9	5601	hgsc.bcm.edu	36	5	179628972	179628972	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
PON3	5446	hgsc.bcm.edu	36	7	94839419	94839419	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
C19orf28	126321	hgsc.bcm.edu	36	19	3498269	3498269	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
BLK	640	hgsc.bcm.edu	36	8	11457896	11457896	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
SERINC2	347735	hgsc.bcm.edu	36	1	31678476	31678477	+	In_Frame_Ins	INS	-	-	CAG	rs3050461	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
SNX7	51375	hgsc.bcm.edu	36	1	98933665	98933666	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	CT	CT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
OBSCN	84033	hgsc.bcm.edu	36	1	226562555	226562556	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
TNFAIP6	7130	hgsc.bcm.edu	36	2	151944292	151944292	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
MUC4	4585	hgsc.bcm.edu	36	3	196999762	196999809	+	In_Frame_Del	DEL	GGTGACAGGAAGAGGGGTGGTGTGACCTGTGGATACTGAGGAAGGGCT	GGTGACAGGAAGAGGGGTGGTGTGACCTGTGGATACTGAGGAAGGGCT	-	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	GGTGACAGGAAGAGGGGTGGTGTGACCTGTGGATACTGAGGAAGGGCT	GGTGACAGGAAGAGGGGTGGTGTGACCTGTGGATACTGAGGAAGGGCT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
ADAM29	11086	hgsc.bcm.edu	36	4	176135647	176135673	+	In_Frame_Del	DEL	TGACACCCTCCCAGAGGCAACCTCAGT	TGACACCCTCCCAGAGGCAACCTCAGT	-	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	TGACACCCTCCCAGAGGCAACCTCAGT	TGACACCCTCCCAGAGGCAACCTCAGT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
TSPYL1	7259	hgsc.bcm.edu	36	6	116707158	116707159	+	In_Frame_Ins	INS	-	-	CAC	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
USP42	84132	hgsc.bcm.edu	36	7	6160039	6160040	+	Frame_Shift_Ins	INS	-	-	C	rs11408379	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
DDHD2	23259	hgsc.bcm.edu	36	8	38228899	38228904	+	In_Frame_Del	DEL	AAAAAG	AAAAAG	-	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	AAAAAG	AAAAAG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
GPRIN2	9721	hgsc.bcm.edu	36	10	46419597	46419598	+	In_Frame_Ins	INS	-	-	ATGAGGGAG	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
TMBIM4	51643	hgsc.bcm.edu	36	12	64818204	64818204	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
C14orf177	283598	hgsc.bcm.edu	36	14	98252280	98252288	+	Frame_Shift_Del	DEL	GGATGCATC	GGATGCATC	-	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	GGATGCATC	GGATGCATC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
ZFYVE19	84936	hgsc.bcm.edu	36	15	38887191	38887192	+	Frame_Shift_Ins	INS	-	-	GGGGC	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
SYNM	23336	hgsc.bcm.edu	36	15	97463630	97463631	+	Frame_Shift_Ins	INS	-	-	G	rs60530833	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
KRTAP4-1	85285	hgsc.bcm.edu	36	17	36594322	36594378	+	Frame_Shift_Del	DEL	CGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG	CGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG	-	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	CGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG	CGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
KRTAP9-8	83901	hgsc.bcm.edu	36	17	36648237	36648251	+	In_Frame_Del	DEL	GACCACCTGCTGCAG	GACCACCTGCTGCAG	-	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	GACCACCTGCTGCAG	GACCACCTGCTGCAG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
ZNF233	353355	hgsc.bcm.edu	36	19	49470636	49470636	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
RALY	22913	hgsc.bcm.edu	36	20	32128525	32128526	+	In_Frame_Ins	INS	-	-	CAG	rs10649600	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
C22orf39	128977	hgsc.bcm.edu	36	22	17815243	17815250	+	Frame_Shift_Del	DEL	TCAGTCCG	TCAGTCCG	-	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	TCAGTCCG	TCAGTCCG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
NEFH	4744	hgsc.bcm.edu	36	22	28215581	28215604	+	In_Frame_Del	DEL	AGGCCAAGTCCCCAGAGAAGGAAG	AGGCCAAGTCCCCAGAGAAGGAAG	-	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	AGGCCAAGTCCCCAGAGAAGGAAG	AGGCCAAGTCCCCAGAGAAGGAAG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
SHROOM4	57477	hgsc.bcm.edu	36	X	50367498	50367499	+	In_Frame_Ins	INS	-	-	TGCTGCTGCTGT	novel	unknown	TCGA-CL-5918-01A-11D-1657-10	TCGA-CL-5918-10A-01D-1657-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	96c37a26-e65f-4fb3-813e-f1716ea6a0a3	b6d0adbc-80e8-4f85-aa89-903ff102635b
