Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
TRIM71	131405	broad.mit.edu	37	3	32932914	32932914	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-A6S6-01A-21D-A32B-08	TCGA-DU-A6S6-10A-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	77449994-108b-4776-9b9f-9cbf53a23159	b7018a1e-4b23-405e-8e01-6b3856d018ff	g.chr3:32932914G>A	ENST00000383763.4	+	4	2281	c.2218G>A	c.(2218-2220)Gag>Aag	p.E740K		NM_001039111.1	NP_001034200.1	Q2Q1W2	LIN41_HUMAN	tripartite motif containing 71, E3 ubiquitin protein ligase	740					multicellular organismal development	cytoplasm	zinc ion binding			breast(3)|endometrium(3)|kidney(1)|large_intestine(4)|lung(7)|ovary(3)|prostate(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	24						GTATGGCTTCGAGGGGGCTCT	0.572000													8	15					0	0	1	0	0
NLRP12	91662	broad.mit.edu	37	19	54314478	54314478	+	Silent	SNP	C	C	T			TCGA-DU-A6S6-01A-21D-A32B-08	TCGA-DU-A6S6-10A-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	77449994-108b-4776-9b9f-9cbf53a23159	b7018a1e-4b23-405e-8e01-6b3856d018ff	g.chr19:54314478C>T	ENST00000324134.6	-	3	603	c.435G>A	c.(433-435)gcG>gcA	p.A145A	NLRP12_ENST00000351894.4_Silent_p.A145A|NLRP12_ENST00000535162.1_Silent_p.A145A|NLRP12_ENST00000354278.3_Silent_p.A145A|NLRP12_ENST00000391772.1_Silent_p.A145A|NLRP12_ENST00000391773.1_Silent_p.A145A|NLRP12_ENST00000391775.3_Silent_p.A145A|NLRP12_ENST00000345770.5_Silent_p.A145A	NM_001277126.1|NM_144687.2	NP_001264055.1|NP_653288.1	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12	145					negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding	p.A145A(1)		NS(1)|breast(4)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(17)|liver(1)|lung(36)|ovary(5)|pancreas(2)|skin(3)|upper_aerodigestive_tract(5)|urinary_tract(1)	80	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		CCCCTAGGCGCGCATTGCGGT	0.567000													38	9					0	0	1	0	0
AKAP14	158798	broad.mit.edu	37	X	119037475	119037475	+	Nonsense_Mutation	SNP	A	A	T			TCGA-DU-A6S6-01A-21D-A32B-08	TCGA-DU-A6S6-10A-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	77449994-108b-4776-9b9f-9cbf53a23159	b7018a1e-4b23-405e-8e01-6b3856d018ff	g.chrX:119037475A>T	ENST00000371431.3	+	4	461	c.187A>T	c.(187-189)Aaa>Taa	p.K63*	AKAP14_ENST00000334356.2_Nonsense_Mutation_p.K63*|AKAP14_ENST00000371425.4_Nonsense_Mutation_p.K63*|AKAP14_ENST00000394594.2_Nonsense_Mutation_p.K63*|AKAP14_ENST00000371422.1_Nonsense_Mutation_p.K63*|AKAP14_ENST00000371423.2_Nonsense_Mutation_p.K63*	NM_178813.5	NP_848928.1	Q86UN6	AKA28_HUMAN	A kinase (PRKA) anchor protein 14	63						cytoplasm				endometrium(4)|large_intestine(1)|lung(8)	13						AAACCCTTTGAAAAACATCAA	0.403000													21	32					0	0	1	0	0
ARL13B	200894	broad.mit.edu	37	3	93761891	93761891	+	Missense_Mutation	SNP	C	C	A	rs139997243		TCGA-DU-A6S6-01A-21D-A32B-08	TCGA-DU-A6S6-10A-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	77449994-108b-4776-9b9f-9cbf53a23159	b7018a1e-4b23-405e-8e01-6b3856d018ff	g.chr3:93761891C>A	ENST00000535334.1	+	6	1045	c.522C>A	c.(520-522)aaC>aaA	p.N174K	ARL13B_ENST00000471138.1_Missense_Mutation_p.N277K|ARL13B_ENST00000394222.3_Missense_Mutation_p.N277K|ARL13B_ENST00000303097.7_Missense_Mutation_p.N170K|ARL13B_ENST00000539730.1_5'UTR	NM_001174151.1	NP_001167622.1	Q3SXY8	AR13B_HUMAN	ADP-ribosylation factor-like 13B	277							GTP binding			endometrium(1)|kidney(1)|large_intestine(3)|lung(3)|urinary_tract(2)	10						AGAAAAAAAACCAAAAAATGG	0.333000													6	13					3.59834e-05	3.59834e-05	1	1	0
ANKRD36C	400986	broad.mit.edu	37	2	96593016	96593016	+	Missense_Mutation	SNP	C	C	A	rs79307257	by1000genomes	TCGA-DU-A6S6-01A-21D-A32B-08	TCGA-DU-A6S6-10A-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	77449994-108b-4776-9b9f-9cbf53a23159	b7018a1e-4b23-405e-8e01-6b3856d018ff	g.chr2:96593016C>A	ENST00000456556.1	-	28	1969	c.1885G>T	c.(1885-1887)Gat>Tat	p.D629Y						ankyrin repeat domain 36C									p.D629Y(1)		breast(1)|endometrium(8)|kidney(5)|lung(4)	18						GAAACAGAATCTTTCTCATCA	0.318000													4	52					3.59834e-05	3.59834e-05	1	1	0
SLC17A4	10050	broad.mit.edu	37	6	25771175	25771175	+	Missense_Mutation	SNP	T	T	A			TCGA-DU-A6S6-01A-21D-A32B-08	TCGA-DU-A6S6-10A-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	77449994-108b-4776-9b9f-9cbf53a23159	b7018a1e-4b23-405e-8e01-6b3856d018ff	g.chr6:25771175T>A	ENST00000377905.4	+	6	760	c.641T>A	c.(640-642)aTt>aAt	p.I214N	SLC17A4_ENST00000397076.2_Intron|SLC17A4_ENST00000439485.2_Intron	NM_005495.2	NP_005486.1	Q9Y2C5	S17A4_HUMAN	solute carrier family 17, member 4	214					phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			breast(4)|endometrium(1)|kidney(4)|large_intestine(3)|lung(21)|prostate(1)|skin(2)|upper_aerodigestive_tract(2)|urinary_tract(1)	39						GGGTCCTTCATTGTTCTACTT	0.478000													100	102					0	0	1	0	0
ADAM23	8745	broad.mit.edu	37	2	207422173	207422173	+	Missense_Mutation	SNP	A	A	T			TCGA-DU-A6S6-01A-21D-A32B-08	TCGA-DU-A6S6-10A-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	77449994-108b-4776-9b9f-9cbf53a23159	b7018a1e-4b23-405e-8e01-6b3856d018ff	g.chr2:207422173A>T	ENST00000264377.3	+	10	1284	c.956A>T	c.(955-957)cAt>cTt	p.H319L	ADAM23_ENST00000374415.3_Missense_Mutation_p.H319L|ADAM23_ENST00000374416.1_Missense_Mutation_p.H319L	NM_003812.2	NP_003803.1	O75077	ADA23_HUMAN	ADAM metallopeptidase domain 23	319	Peptidase M12B.				cell adhesion|central nervous system development|proteolysis	extracellular region|integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			NS(2)|breast(1)|endometrium(6)|kidney(3)|large_intestine(5)|liver(2)|lung(22)|ovary(2)|prostate(3)|skin(3)|stomach(1)|urinary_tract(1)	51				LUSC - Lung squamous cell carcinoma(261;0.0961)|Lung(261;0.182)|Epithelial(149;0.205)		CGCTCTTCTCATGCACATACC	0.378000													75	85					0	0	1	0	0
VANGL2	57216	broad.mit.edu	37	1	160385688	160385688	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-A6S6-01A-21D-A32B-08	TCGA-DU-A6S6-10A-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	77449994-108b-4776-9b9f-9cbf53a23159	b7018a1e-4b23-405e-8e01-6b3856d018ff	g.chr1:160385688C>T	ENST00000368061.2	+	2	535	c.61C>T	c.(61-63)Cgc>Tgc	p.R21C		NM_020335.2	NP_065068.1	Q9ULK5	VANG2_HUMAN	VANGL planar cell polarity protein 2	21					apical protein localization|heart looping|nonmotile primary cilium assembly	apical plasma membrane|integral to membrane				biliary_tract(1)|breast(2)|central_nervous_system(1)|endometrium(5)|kidney(1)|large_intestine(7)|lung(12)|ovary(1)|pancreas(1)|prostate(1)|skin(2)|stomach(2)|urinary_tract(1)	37	all_cancers(52;1.08e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			CCGCAGCTCCCGCAAGCACAG	0.657000													4	25					0	0	1	0	0
INPPL1	3636	broad.mit.edu	37	11	71949150	71949150	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-A6S6-01A-21D-A32B-08	TCGA-DU-A6S6-10A-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	77449994-108b-4776-9b9f-9cbf53a23159	b7018a1e-4b23-405e-8e01-6b3856d018ff	g.chr11:71949150G>A	ENST00000298229.2	+	27	3821	c.3617G>A	c.(3616-3618)cGg>cAg	p.R1206Q	INPPL1_ENST00000538751.1_Missense_Mutation_p.R964Q|INPPL1_ENST00000541756.1_Missense_Mutation_p.R964Q	NM_001567.3	NP_001558.3	O15357	SHIP2_HUMAN	inositol polyphosphate phosphatase-like 1	1206	SAM.				actin filament organization|cell adhesion|endocytosis	actin cortical patch|cytosol	actin binding|SH2 domain binding|SH3 domain binding			breast(2)|endometrium(9)|kidney(1)|large_intestine(7)|lung(12)|ovary(1)|pancreas(1)|prostate(3)|skin(5)|upper_aerodigestive_tract(2)|urinary_tract(1)	44						GCCTGGCTGCGGGCCATCGGC	0.701000											OREG0021191	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	14					0	0	1	0	0
MBTPS2	51360	broad.mit.edu	37	X	21871590	21871590	+	Silent	SNP	G	G	A			TCGA-DU-A6S6-01A-21D-A32B-08	TCGA-DU-A6S6-10A-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	77449994-108b-4776-9b9f-9cbf53a23159	b7018a1e-4b23-405e-8e01-6b3856d018ff	g.chrX:21871590G>A	ENST00000365779.2	+	5	720	c.639G>A	c.(637-639)tcG>tcA	p.S213S	MBTPS2_ENST00000465888.1_3'UTR|MBTPS2_ENST00000379484.5_Silent_p.S213S			O43462	MBTP2_HUMAN	membrane-bound transcription factor peptidase, site 2	213					cholesterol metabolic process|proteolysis	Golgi membrane|integral to membrane	metal ion binding|metalloendopeptidase activity			breast(2)|endometrium(3)|large_intestine(3)|lung(13)|ovary(1)|skin(2)	24						AACTTATATCGCCAGTCCAGC	0.348000													20	199					0	0	1	0	0
IDH1	3417	broad.mit.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-DU-A6S6-01A-21D-A32B-08	TCGA-DU-A6S6-10A-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	77449994-108b-4776-9b9f-9cbf53a23159	b7018a1e-4b23-405e-8e01-6b3856d018ff	g.chr2:209113112C>T	ENST00000415913.1	-	4	776	c.395G>A	c.(394-396)cGt>cAt	p.R132H	IDH1_ENST00000446179.1_Missense_Mutation_p.R132H|IDH1_ENST00000345146.2_Missense_Mutation_p.R132H			O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132			R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).|R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2774)|p.R132L(59)|p.R132V(1)|p.G131_R132>VL(1)		NS(1)|autonomic_ganglia(2)|biliary_tract(24)|bone(237)|central_nervous_system(3764)|endometrium(3)|haematopoietic_and_lymphoid_tissue(794)|kidney(2)|large_intestine(7)|lung(7)|prostate(6)|skin(5)|soft_tissue(12)|thyroid(22)|urinary_tract(1)	4887				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		ATAAGCATGACGACCTATGAT	0.393000			Mis		gliobastoma								16	37					0	0	1	0	0
ARID1B	57492	broad.mit.edu	37	6	157525120	157525120	+	Missense_Mutation	SNP	A	A	G	rs140177120	byFrequency	TCGA-DU-A6S6-01A-21D-A32B-08	TCGA-DU-A6S6-10A-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	77449994-108b-4776-9b9f-9cbf53a23159	b7018a1e-4b23-405e-8e01-6b3856d018ff	g.chr6:157525120A>G	ENST00000346085.5	+	19	5016	c.5015A>G	c.(5014-5016)aAt>aGt	p.N1672S	ARID1B_ENST00000275248.4_Missense_Mutation_p.N1654S|ARID1B_ENST00000367148.1_Missense_Mutation_p.N1712S|ARID1B_ENST00000350026.5_Missense_Mutation_p.N1659S	NM_020732.3	NP_065783.3	Q8NFD5	ARI1B_HUMAN	AT rich interactive domain 1B (SWI1-like)	1659					chromatin-mediated maintenance of transcription|nervous system development|transcription, DNA-dependent	SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			NS(2)|breast(5)|central_nervous_system(4)|endometrium(12)|kidney(4)|large_intestine(11)|lung(30)|ovary(3)|pancreas(1)|prostate(4)|skin(2)|urinary_tract(3)	81		Breast(66;0.000162)|Ovarian(120;0.0265)		OV - Ovarian serous cystadenocarcinoma(65;3.19e-17)|BRCA - Breast invasive adenocarcinoma(81;1.01e-05)		GCTACTTTCAATCTCTCCCAG	0.428000													94	124					0	0	1	0	0
DSEL	92126	broad.mit.edu	37	18	65179104	65179104	+	Silent	SNP	C	C	T			TCGA-DU-A6S6-01A-21D-A32B-08	TCGA-DU-A6S6-10A-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	77449994-108b-4776-9b9f-9cbf53a23159	b7018a1e-4b23-405e-8e01-6b3856d018ff	g.chr18:65179104C>T	ENST00000310045.7	-	2	4245	c.2772G>A	c.(2770-2772)ggG>ggA	p.G924G	CTD-2541J13.2_ENST00000583493.1_RNA	NM_032160.2	NP_115536.1	Q8IZU8	DSEL_HUMAN	dermatan sulfate epimerase-like	914						integral to membrane	isomerase activity|sulfotransferase activity			NS(3)|breast(1)|central_nervous_system(1)|cervix(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(2)|kidney(2)|large_intestine(25)|lung(23)|ovary(4)|pancreas(1)|prostate(2)|skin(3)|stomach(1)|upper_aerodigestive_tract(2)	74		Esophageal squamous(42;0.129)				AACGAAAATGCCCACTGCGGA	0.438000													4	65					0	0	1	0	0
CENPJ	55835	broad.mit.edu	37	13	25478133	25478133	+	Missense_Mutation	SNP	T	T	G			TCGA-DU-A6S6-01A-21D-A32B-08	TCGA-DU-A6S6-10A-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	77449994-108b-4776-9b9f-9cbf53a23159	b7018a1e-4b23-405e-8e01-6b3856d018ff	g.chr13:25478133T>G	ENST00000381884.4	-	8	2941	c.2756A>C	c.(2755-2757)aAg>aCg	p.K919T	CENPJ_ENST00000545981.1_Missense_Mutation_p.K919T	NM_018451.4	NP_060921.3	Q9HC77	CENPJ_HUMAN	centromere protein J	919					cell division|centriole replication|G2/M transition of mitotic cell cycle|microtubule nucleation|microtubule polymerization	centriole|cytosol|gamma-tubulin small complex|microtubule	protein domain specific binding|tubulin binding			endometrium(5)|kidney(4)|large_intestine(14)|lung(13)|ovary(5)|prostate(2)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	47		Lung SC(185;0.0225)|Breast(139;0.0602)		all cancers(112;0.00793)|Epithelial(112;0.0411)|OV - Ovarian serous cystadenocarcinoma(117;0.139)		AGCTTTAAACTTTTCTATTTC	0.363000													53	67					0	0	1	0	0
ANKRD36C	400986	broad.mit.edu	37	2	96593000	96593000	+	Missense_Mutation	SNP	A	A	G	rs111976783		TCGA-DU-A6S6-01A-21D-A32B-08	TCGA-DU-A6S6-10A-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	77449994-108b-4776-9b9f-9cbf53a23159	b7018a1e-4b23-405e-8e01-6b3856d018ff	g.chr2:96593000A>G	ENST00000456556.1	-	28	1985	c.1901T>C	c.(1900-1902)aTa>aCa	p.I634T						ankyrin repeat domain 36C									p.I634T(1)		breast(1)|endometrium(8)|kidney(5)|lung(4)	18						TTCTGTGGCTATATTTGAAAC	0.338000													4	54					0	0	1	0	0
TCF20	6942	broad.mit.edu	37	22	42609709	42609709	+	Missense_Mutation	SNP	G	G	A			TCGA-DU-A6S6-01A-21D-A32B-08	TCGA-DU-A6S6-10A-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	77449994-108b-4776-9b9f-9cbf53a23159	b7018a1e-4b23-405e-8e01-6b3856d018ff	g.chr22:42609709G>A	ENST00000359486.3	-	1	1739	c.1603C>T	c.(1603-1605)Cgg>Tgg	p.R535W	TCF20_ENST00000335626.4_Missense_Mutation_p.R535W	NM_005650.1	NP_005641.1	Q9UGU0	TCF20_HUMAN	transcription factor 20 (AR1)	535					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			breast(1)|central_nervous_system(1)|cervix(1)|endometrium(5)|kidney(7)|large_intestine(13)|lung(22)|ovary(5)|prostate(1)|skin(2)|soft_tissue(1)|upper_aerodigestive_tract(2)|urinary_tract(5)	66						CTTAGTTGCCGCACTCTCTCG	0.557000													4	224					0	0	1	0	0
ANKRD36C	400986	broad.mit.edu	37	2	96593025	96593025	+	Missense_Mutation	SNP	C	C	T	rs75189823	by1000genomes	TCGA-DU-A6S6-01A-21D-A32B-08	TCGA-DU-A6S6-10A-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	77449994-108b-4776-9b9f-9cbf53a23159	b7018a1e-4b23-405e-8e01-6b3856d018ff	g.chr2:96593025C>T	ENST00000456556.1	-	28	1960	c.1876G>A	c.(1876-1878)Gat>Aat	p.D626N						ankyrin repeat domain 36C									p.D626N(1)		breast(1)|endometrium(8)|kidney(5)|lung(4)	18						TCTTTCTCATCACTTGTAGCC	0.318000													4	51					0	0	1	0	0
IL2RB	0	broad.mit.edu	37	22	37524753	37524753	+	Missense_Mutation	SNP	C	C	T			TCGA-DU-A6S6-01A-21D-A32B-08	TCGA-DU-A6S6-10A-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	77449994-108b-4776-9b9f-9cbf53a23159	b7018a1e-4b23-405e-8e01-6b3856d018ff	g.chr22:37524753C>T	ENST00000216223.5	-	10	1237	c.1039G>A	c.(1039-1041)Gca>Aca	p.A347T		NM_000878.3	NP_000869.1	P14784	IL2RB_HUMAN	interleukin 2 receptor, beta	347					interspecies interaction between organisms|positive regulation of survival gene product expression|protein complex assembly	external side of plasma membrane|integral to plasma membrane	interleukin-2 receptor activity			breast(1)|endometrium(1)|kidney(1)|large_intestine(4)|lung(9)|ovary(1)|prostate(1)|skin(5)	23					Aldesleukin(DB00041)|Basiliximab(DB00074)|Daclizumab(DB00111)|Denileukin diftitox(DB00004)	CTTAAGGATGCGGGCTCAGGC	0.607000													3	49					0	0	1	0	0
EPHA1	2041	broad.mit.edu	37	7	143096028	143096028	+	Silent	SNP	C	C	T			TCGA-DU-A6S6-01A-21D-A32B-08	TCGA-DU-A6S6-10A-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	77449994-108b-4776-9b9f-9cbf53a23159	b7018a1e-4b23-405e-8e01-6b3856d018ff	g.chr7:143096028C>T	ENST00000275815.3	-	6	1088	c.1002G>A	c.(1000-1002)tcG>tcA	p.S334S		NM_005232.4	NP_005223.4	P21709	EPHA1_HUMAN	EPH receptor A1	334	Fibronectin type-III 1.					integral to plasma membrane	ATP binding|ephrin receptor activity			NS(1)|breast(1)|central_nervous_system(1)|endometrium(4)|kidney(3)|large_intestine(11)|lung(21)|ovary(4)|skin(1)|stomach(1)|urinary_tract(3)	51	Melanoma(164;0.205)	Myeloproliferative disorder(862;0.0255)				TTCGGGGGGCCGAGGGGGGAC	0.632000													6	18					0	0	1	0	0
PTCD3	55037	broad.mit.edu	37	2	86348616	86348616	+	Missense_Mutation	SNP	C	C	G			TCGA-DU-A6S6-01A-21D-A32B-08	TCGA-DU-A6S6-10A-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	77449994-108b-4776-9b9f-9cbf53a23159	b7018a1e-4b23-405e-8e01-6b3856d018ff	g.chr2:86348616C>G	ENST00000254630.7	+	8	619	c.553C>G	c.(553-555)Ctt>Gtt	p.L185V	PTCD3_ENST00000465560.1_3'UTR|PTCD3_ENST00000409277.3_Silent_p.L143L	NM_017952.5	NP_060422.4	Q96EY7	PTCD3_HUMAN	pentatricopeptide repeat domain 3	185						mitochondrion	protein binding			NS(1)|breast(2)|endometrium(3)|kidney(4)|large_intestine(4)|lung(6)|ovary(1)|prostate(1)	22						CACTGTGTCTCTTGAAACAAC	0.363000													29	44					0	0	1	0	0
CYP4Z2P	0	broad.mit.edu	37	1	47310359	47310360	+	RNA	INS	-	-	T			TCGA-DU-A6S6-01A-21D-A32B-08	TCGA-DU-A6S6-10A-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	77449994-108b-4776-9b9f-9cbf53a23159	b7018a1e-4b23-405e-8e01-6b3856d018ff	g.chr1:47310359_47310360insT	ENST00000505841.1	-	0	1269					NR_002788.2																						CAAAAACAAAACCCTAGATATT	0.421													3	4	---	---	---	---					
AC074391.1	0	broad.mit.edu	37	2	65738863	65738863	+	RNA	DEL	G	G	-			TCGA-DU-A6S6-01A-21D-A32B-08	TCGA-DU-A6S6-10A-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	77449994-108b-4776-9b9f-9cbf53a23159	b7018a1e-4b23-405e-8e01-6b3856d018ff	g.chr2:65738863delG	ENST00000377977.3	+	0	862																											TTTTTTTTTTGTCCAGGAGGC	0.303													3	4	---	---	---	---					
SLC26A6	65010	broad.mit.edu	37	3	48668050	48668050	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DU-A6S6-01A-21D-A32B-08	TCGA-DU-A6S6-10A-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	77449994-108b-4776-9b9f-9cbf53a23159	b7018a1e-4b23-405e-8e01-6b3856d018ff	g.chr3:48668050delC	ENST00000358747.6	-	9	1425	c.1175delG	c.(1174-1176)gcfs	p.G392fs	SLC26A6_ENST00000420764.2_Frame_Shift_Del_p.G413fs|SLC26A6_ENST00000395550.2_Frame_Shift_Del_p.G413fs|SLC26A6_ENST00000455886.2_Frame_Shift_Del_p.G377fs|SLC26A6_ENST00000337000.8_Frame_Shift_Del_p.G306fs|SLC26A6_ENST00000383733.3_Frame_Shift_Del_p.G413fs	NM_001040454.1	NP_001035544.1			solute carrier family 26 (anion exchanger), member 6										SLC26A6/PRKAR2A(2)	NS(1)|breast(1)|cervix(1)|endometrium(3)|large_intestine(1)|lung(11)|ovary(1)	19				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00609)		CTGCGAGTTGCCCCCGGTGCT	0.617													2	4	---	---	---	---					
MDGA1	266727	broad.mit.edu	37	6	37616799	37616800	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-DU-A6S6-01A-21D-A32B-08	TCGA-DU-A6S6-10A-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	77449994-108b-4776-9b9f-9cbf53a23159	b7018a1e-4b23-405e-8e01-6b3856d018ff	g.chr6:37616799_37616800delGA	ENST00000434837.2	-	9	3030_3031	c.1852_1853delTC	c.(1852-1854)cfs	p.S618fs	MDGA1_ENST00000505425.1_Frame_Shift_Del_p.S618fs|MDGA1_ENST00000297153.7_Frame_Shift_Del_p.S621fs	NM_153487.3	NP_705691.1	Q8NFP4	MDGA1_HUMAN	MAM domain containing glycosylphosphatidylinositol anchor 1	618	Ig-like 6.				brain development|neuron migration|spinal cord association neuron differentiation	anchored to plasma membrane				central_nervous_system(2)|endometrium(6)|kidney(3)|large_intestine(12)|lung(11)|prostate(1)|skin(2)|urinary_tract(1)	38						CACATCGTTGGAGACGCTGCAC	0.718													2	4	---	---	---	---					
TRBV7-6	0	broad.mit.edu	37	7	142139624	142139625	+	RNA	INS	-	-	CA	rs57717282		TCGA-DU-A6S6-01A-21D-A32B-08	TCGA-DU-A6S6-10A-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	77449994-108b-4776-9b9f-9cbf53a23159	b7018a1e-4b23-405e-8e01-6b3856d018ff	g.chr7:142139624_142139625insCA	ENST00000390374.3	-	0	94																											TTTGTCGTCAGcacacacacac	0.455													9	46	---	---	---	---					
PC	5091	broad.mit.edu	37	11	66619307	66619307	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DU-A6S6-01A-21D-A32B-08	TCGA-DU-A6S6-10A-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	77449994-108b-4776-9b9f-9cbf53a23159	b7018a1e-4b23-405e-8e01-6b3856d018ff	g.chr11:66619307delC	ENST00000393960.1	-	16	2217	c.1936delG	c.(1936-1938)ccfs	p.A646fs	PC_ENST00000393958.2_Frame_Shift_Del_p.A646fs|PC_ENST00000393955.2_Frame_Shift_Del_p.A646fs	NM_001040716.1	NP_001035806.1	P11498	PYC_HUMAN	pyruvate carboxylase	646	Carboxyltransferase.				gluconeogenesis|lipid biosynthetic process	mitochondrial matrix	ATP binding|biotin binding|biotin carboxylase activity|metal ion binding|pyruvate carboxylase activity			cervix(1)|endometrium(3)|kidney(3)|large_intestine(9)|lung(12)|ovary(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	32		Melanoma(852;0.0525)		Lung(977;0.153)|LUSC - Lung squamous cell carcinoma(976;0.227)	Biotin(DB00121)|Pyruvic acid(DB00119)	ACAGCATTGGCCCCCCGCAGC	0.642													17	37	---	---	---	---					
ZMYM2	7750	broad.mit.edu	37	13	20580521	20580522	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-DU-A6S6-01A-21D-A32B-08	TCGA-DU-A6S6-10A-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	77449994-108b-4776-9b9f-9cbf53a23159	b7018a1e-4b23-405e-8e01-6b3856d018ff	g.chr13:20580521_20580522delAT	ENST00000382869.3	+	6	1558_1559	c.1307_1308delAT	c.(1306-1308)cfs	p.H436fs	ZMYM2_ENST00000382883.3_Intron|ZMYM2_ENST00000382874.2_Frame_Shift_Del_p.H436fs|ZMYM2_ENST00000382881.3_Frame_Shift_Del_p.H349fs|ZMYM2_ENST00000382871.2_Frame_Shift_Del_p.H436fs	NM_001190965.1|NM_003453.3|NM_197968.2	NP_001177894.1|NP_003444.1|NP_932072.1	Q9UBW7	ZMYM2_HUMAN	zinc finger, MYM-type 2	436					regulation of transcription, DNA-dependent|transcription, DNA-dependent	PML body	ubiquitin conjugating enzyme binding|zinc ion binding			large_intestine(3)|lung(3)|ovary(2)|prostate(1)|upper_aerodigestive_tract(1)	10		all_cancers(29;8.65e-21)|all_epithelial(30;1.04e-18)|all_lung(29;6.75e-18)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;0.000148)|Epithelial(112;0.000249)|OV - Ovarian serous cystadenocarcinoma(117;0.00816)|Lung(94;0.0173)|LUSC - Lung squamous cell carcinoma(192;0.0856)		TAGATTCGCCATGAAGTCAGCT	0.312													2	4	---	---	---	---					
IGFL2	147920	broad.mit.edu	37	19	46652260	46652260	+	Frame_Shift_Del	DEL	A	A	-			TCGA-DU-A6S6-01A-21D-A32B-08	TCGA-DU-A6S6-10A-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	77449994-108b-4776-9b9f-9cbf53a23159	b7018a1e-4b23-405e-8e01-6b3856d018ff	g.chr19:46652260delA	ENST00000434646.2	+	2	309	c.18delA	c.(16-18)tcfs	p.S6fs	AC007193.6_ENST00000597989.1_lincRNA|IGFL2_ENST00000600243.1_Intron|IGFL2_ENST00000377693.4_Intron	NM_001002915.2	NP_001002915.2	Q6UWQ7	IGFL2_HUMAN	IGF-like family member 2	0						extracellular region	protein binding			cervix(1)|lung(5)	6		Ovarian(192;0.0908)|all_neural(266;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(486;0.031)|Epithelial(262;0.247)		TCAGTGTCTCAGGCATGAGGA	0.552													2	4	---	---	---	---					
JAG1	182	broad.mit.edu	37	20	10620204	10620207	+	Frame_Shift_Del	DEL	TGTT	TGTT	-			TCGA-DU-A6S6-01A-21D-A32B-08	TCGA-DU-A6S6-10A-01D-A329-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	77449994-108b-4776-9b9f-9cbf53a23159	b7018a1e-4b23-405e-8e01-6b3856d018ff	g.chr20:10620204_10620207delTGTT	ENST00000254958.5	-	26	4111_4114	c.3596_3599delAACA	c.(3595-3600)agfs	p.KQ1199fs	JAG1_ENST00000423891.2_Frame_Shift_Del_p.KQ1040fs	NM_000214.2	NP_000205.1	P78504	JAG1_HUMAN	jagged 1	1199					angiogenesis|cell communication|cell fate determination|endothelial cell differentiation|hemopoiesis|keratinocyte differentiation|myoblast differentiation|Notch receptor processing|Notch signaling pathway|regulation of cell migration|regulation of cell proliferation	extracellular region|integral to plasma membrane	calcium ion binding|growth factor activity|Notch binding|structural molecule activity			biliary_tract(1)|breast(2)|central_nervous_system(3)|cervix(1)|endometrium(6)|kidney(3)|large_intestine(10)|lung(14)|ovary(2)|pancreas(1)|urinary_tract(1)	44						TCTGTTGTCCTGTTTGTTTGTCCA	0.564									Alagille Syndrome				69	170	---	---	---	---					
