Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
KCNA10	3744	broad.mit.edu	37	1	111059964	111059964	+	Missense_Mutation	SNP	T	T	G			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr1:111059964T>G	ENST00000369771.2	-	1	1833	c.1446A>C	c.(1444-1446)agA>agC	p.R482S		NM_005549.2	NP_005540.1	Q16322	KCA10_HUMAN	potassium voltage-gated channel, shaker-related subfamily, member 10	482						voltage-gated potassium channel complex	intracellular cyclic nucleotide activated cation channel activity|voltage-gated potassium channel activity			endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(13)|lung(13)|ovary(3)|skin(1)|urinary_tract(1)	35		all_cancers(81;4.57e-06)|all_epithelial(167;1.52e-05)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0238)|all cancers(265;0.0874)|Colorectal(144;0.103)|Epithelial(280;0.116)|LUSC - Lung squamous cell carcinoma(189;0.134)		TGTTGAGGATTCTTTCAATTT	0.463000													7	184					0	0	0.278610	0	0
CCT6P1	643253	broad.mit.edu	37	7	65226641	65226641	+	RNA	SNP	G	G	T			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr7:65226641G>T	ENST00000442266.1	+	0	1167																											AGGTTCTTGCGCAGAATTCTG	0.383000													3	50					0.115264	0.126564	0.115264	1	0
DSP	1832	broad.mit.edu	37	6	7570788	7570788	+	Missense_Mutation	SNP	A	A	G			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr6:7570788A>G	ENST00000379802.3	+	13	2034	c.1693A>G	c.(1693-1695)Atc>Gtc	p.I565V	DSP_ENST00000418664.2_Missense_Mutation_p.I565V	NM_004415.2	NP_004406.2	P15924	DESP_HUMAN	desmoplakin	565	Globular 1.|Interacts with plakophilin 1 and junction plakoglobin.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			biliary_tract(1)|breast(6)|central_nervous_system(7)|cervix(1)|endometrium(8)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(16)|liver(2)|lung(27)|ovary(4)|prostate(1)|skin(8)|stomach(3)|upper_aerodigestive_tract(7)|urinary_tract(5)	101	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		GGCCATGACAATCGCCAAGGT	0.557000													52	114					0	0	0.870114	0	0
NPRL3	8131	broad.mit.edu	37	16	139794	139794	+	Missense_Mutation	SNP	G	G	A			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr16:139794G>A	ENST00000399953.3	-	11	1670	c.1268C>T	c.(1267-1269)cCg>cTg	p.P423L	NPRL3_ENST00000399951.3_Missense_Mutation_p.P244L|NPRL3_ENST00000405960.3_5'UTR	NM_001077350.2|NM_001243247.1|NM_001243248.1|NM_001243249.1	NP_001070818.1|NP_001230176.1|NP_001230177.1|NP_001230178.1	Q12980	NPRL3_HUMAN	nitrogen permease regulator-like 3 (S. cerevisiae)	423							protein binding			endometrium(1)|large_intestine(3)|ovary(2)	6						GTCCTCTCGCGGACGGGGCTC	0.667000													6	14					0	0	0.278610	0	0
PTPRD	5789	broad.mit.edu	37	9	8484279	8484279	+	Silent	SNP	G	G	A			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr9:8484279G>A	ENST00000381196.4	-	27	3796	c.3253C>T	c.(3253-3255)Ctg>Ttg	p.L1085L	PTPRD_ENST00000540109.1_Silent_p.L1085L|PTPRD_ENST00000360074.4_Silent_p.L1072L|PTPRD_ENST00000358503.5_Silent_p.L1063L|PTPRD_ENST00000486161.1_Silent_p.L674L|PTPRD_ENST00000356435.5_Silent_p.L1085L|PTPRD_ENST00000355233.5_Silent_p.L674L|PTPRD_ENST00000397606.3_Silent_p.L664L|PTPRD_ENST00000397611.3_Silent_p.L671L|PTPRD_ENST00000397617.3_Silent_p.L664L|PTPRD_ENST00000537002.1_Silent_p.L671L	NM_002839.3	NP_002830.1	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1085	Fibronectin type-III 8.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			NS(1)|breast(7)|central_nervous_system(1)|endometrium(11)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(22)|liver(1)|lung(83)|ovary(4)|pancreas(1)|prostate(7)|skin(19)|stomach(3)|upper_aerodigestive_tract(5)|urinary_tract(1)	168		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		CGATTTGTCAGCACAAATGAA	0.468000										TSP Lung(15;0.13)			4	159					0	0	0.150653	0	0
CD9	928	broad.mit.edu	37	12	6334633	6334633	+	Silent	SNP	A	A	G			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr12:6334633A>G	ENST00000382518.1	+	3	544	c.108A>G	c.(106-108)cgA>cgG	p.R36R	CD9_ENST00000009180.4_Silent_p.R36R|CD9_ENST00000382515.2_5'UTR|CD9_ENST00000481267.1_3'UTR			P21926	CD9_HUMAN	CD9 molecule	36					cell adhesion|cellular component movement|fusion of sperm to egg plasma membrane|paranodal junction assembly|platelet activation|platelet degranulation	integral to plasma membrane|platelet alpha granule membrane				endometrium(2)|large_intestine(1)|lung(1)|ovary(1)|prostate(1)|skin(1)|stomach(1)	8						TATGGCTCCGATTCGACTCTC	0.488000													7	137					0	0	0.307466	0	0
ARAP2	116984	broad.mit.edu	37	4	36081903	36081903	+	Splice_Site	SNP	T	T	C			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr4:36081903T>C	ENST00000303965.4	-	31	5034		c.e31-2			NM_015230.3	NP_056045.2	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2						regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			breast(2)|central_nervous_system(2)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(22)|liver(1)|lung(32)|ovary(2)|pancreas(1)|prostate(3)|skin(7)|urinary_tract(1)	82						CACAGGTGCCTGCAAAACGAG	0.403000													3	96					0	0	0.115264	0	0
CACHD1	57685	broad.mit.edu	37	1	65095121	65095121	+	Missense_Mutation	SNP	G	G	A			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr1:65095121G>A	ENST00000371073.2	+	5	601	c.601G>A	c.(601-603)Gca>Aca	p.A201T	CACHD1_ENST00000495994.1_3'UTR|CACHD1_ENST00000290039.5_Missense_Mutation_p.A150T			Q5VU97	CAHD1_HUMAN	cache domain containing 1	201					calcium ion transport	integral to membrane				breast(4)|endometrium(3)|kidney(3)|large_intestine(20)|lung(14)|ovary(2)|pancreas(1)|prostate(5)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	55						TGTTTTCCCAGCACACAAGTT	0.403000													4	215					0	0	0.184627	0	0
RARS	5917	broad.mit.edu	37	5	167919717	167919717	+	Silent	SNP	C	C	T			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr5:167919717C>T	ENST00000231572.3	+	3	288	c.234C>T	c.(232-234)agC>agT	p.S78S	RARS_ENST00000538719.1_5'UTR	NM_002887.3	NP_002878.2	P54136	SYRC_HUMAN	arginyl-tRNA synthetase	78					arginyl-tRNA aminoacylation	cytosol|nucleus|soluble fraction	arginine-tRNA ligase activity|ATP binding|protein binding			breast(1)|endometrium(1)|kidney(1)|large_intestine(4)|lung(11)|ovary(2)|skin(1)|stomach(1)	22	Renal(175;0.000159)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0208)|all_neural(177;0.0227)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0693)|Epithelial(171;0.131)|OV - Ovarian serous cystadenocarcinoma(192;0.156)		ACATTATTAGCCGCCTACAAG	0.408000													4	248					0	0	0.150653	0	0
GK5	256356	broad.mit.edu	37	3	141934478	141934478	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr3:141934478C>T	ENST00000392993.2	-	2	355	c.204G>A	c.(202-204)tgG>tgA	p.W68*	GK5_ENST00000544571.1_Nonsense_Mutation_p.W68*|GK5_ENST00000466685.3_5'UTR	NM_001039547.2	NP_001034636.1	Q6ZS86	GLPK5_HUMAN	glycerol kinase 5 (putative)	68					glycerol metabolic process		ATP binding|glycerol kinase activity			kidney(1)|large_intestine(1)|lung(7)|urinary_tract(1)	10						CAAATTGAATCCAAAGAACAT	0.284000													5	78					0	0	0.184627	0	0
LOC101927060	101927060	broad.mit.edu	37	17	45128742	45128742	+	RNA	SNP	T	T	G	rs34655963	by1000genomes	TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr17:45128742T>G	ENST00000575173.1	-	0	418																											TAATGATTTTTATTATACTTT	0.328000													4	139					0	0	0.150653	0	0
CBLL1	79872	broad.mit.edu	37	7	107399418	107399418	+	Missense_Mutation	SNP	A	A	T			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr7:107399418A>T	ENST00000440859.2	+	6	1738	c.1271A>T	c.(1270-1272)tAt>tTt	p.Y424F	CBLL1_ENST00000222597.2_Missense_Mutation_p.Y423F	NM_024814.2	NP_079090.2	Q75N03	HAKAI_HUMAN	Cbl proto-oncogene-like 1, E3 ubiquitin protein ligase	424	Pro-rich.				cell-cell adhesion|negative regulation of cell adhesion|positive regulation of cell migration|positive regulation of endocytosis		protein binding|ubiquitin-protein ligase activity|zinc ion binding			endometrium(2)|large_intestine(2)|lung(9)|ovary(2)|prostate(3)|skin(3)	21						CCTCACCATTATAATCCTAAC	0.502000													19	189					0	0	0.557998	0	0
SULF2	55959	broad.mit.edu	37	20	46294036	46294036	+	Splice_Site	SNP	A	A	G			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr20:46294036A>G	ENST00000359930.4	-	14	2755	c.1902_splice	c.e14-1	p.I635_splice	SULF2_ENST00000467815.1_Splice_Site_p.I635_splice|SULF2_ENST00000361612.4_Splice_Site_p.I635_splice|SULF2_ENST00000484875.1_Splice_Site_p.I635_splice	NM_018837.3	NP_061325.1	Q8IWU5	SULF2_HUMAN	sulfatase 2	635					bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding	p.I635T(1)		breast(2)|endometrium(4)|kidney(1)|large_intestine(7)|lung(22)|ovary(4)|pancreas(1)|prostate(5)|skin(5)|upper_aerodigestive_tract(2)|urinary_tract(1)	54						CAGGGTTTCAATCTGAGGGAG	0.532000													4	262					0	0	0.150653	0	0
NPIPA5	100288332	broad.mit.edu	37	16	15457701	15457701	+	Missense_Mutation	SNP	G	G	A			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr16:15457701G>A	ENST00000360151.4	-	8	867	c.868C>T	c.(868-870)Ctc>Ttc	p.L290F		NM_001277325.1	NP_001264254.1			nuclear pore complex interacting protein family, member A5									p.L290F(2)									AGGGGAGTGAGCAGACACTCG	0.562000													3	90					0	0	0.217242	0	0
TLR4	7099	broad.mit.edu	37	9	120475351	120475351	+	Silent	SNP	G	G	C			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr9:120475351G>C	ENST00000355622.6	+	3	1046	c.945G>C	c.(943-945)ctG>ctC	p.L315L	TLR4_ENST00000472304.1_3'UTR|TLR4_ENST00000394487.4_Silent_p.L275L	NM_138554.4|NM_138557.2	NP_612564.1|NP_612567.1	O00206	TLR4_HUMAN	toll-like receptor 4	315					activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			breast(2)|central_nervous_system(1)|endometrium(3)|kidney(2)|large_intestine(12)|lung(66)|ovary(4)|pancreas(1)|skin(6)|upper_aerodigestive_tract(5)|urinary_tract(1)	103						CATTTTCCCTGGTGAGTGTGA	0.318000													57	161					0	0	0.870114	0	0
SF3B2	10992	broad.mit.edu	37	11	65820518	65820518	+	Silent	SNP	G	G	A			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr11:65820518G>A	ENST00000528302.1	+	3	255	c.201G>A	c.(199-201)cgG>cgA	p.R67R	SF3B2_ENST00000322535.6_Silent_p.R67R			Q13435	SF3B2_HUMAN	splicing factor 3b, subunit 2, 145kDa	67					interspecies interaction between organisms	catalytic step 2 spliceosome|nucleoplasm|U12-type spliceosomal complex	nucleic acid binding|protein binding			breast(3)|cervix(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(8)|liver(2)|lung(14)|ovary(2)|skin(1)|upper_aerodigestive_tract(2)|urinary_tract(2)	41						TGCTGAATCGGCCGGTTTTGA	0.488000													5	289					0	0	0.248553	0	0
SLC22A17	51310	broad.mit.edu	37	14	23816939	23816939	+	Splice_Site	SNP	A	A	G			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr14:23816939A>G	ENST00000354772.3	-	8	1449	c.944_splice	c.e8-1	p.F316_splice	SLC22A17_ENST00000397267.1_Splice_Site_p.F316_splice|SLC22A17_ENST00000474057.1_5'UTR|SLC22A17_ENST00000397260.3_Splice_Site_p.F205_splice|SLC22A17_ENST00000206544.8_Splice_Site_p.F316_splice	NM_016609.3	NP_057693.3	Q8WUG5	S22AH_HUMAN	solute carrier family 22, member 17	316					siderophore transport	integral to organelle membrane|integral to plasma membrane|vacuolar membrane	transmembrane receptor activity|transmembrane transporter activity			breast(1)|cervix(1)|endometrium(1)|large_intestine(3)|lung(3)|ovary(1)|pancreas(1)|skin(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	15	all_cancers(95;7.12e-06)			GBM - Glioblastoma multiforme(265;0.00643)		TGGGCAATGAAGCTGTGAGAA	0.642000													3	97					0	0	0.150653	0	0
SPATA31D4	389761	broad.mit.edu	37	9	84547870	84547870	+	RNA	SNP	T	T	C	rs138226188	by1000genomes	TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr9:84547870T>C	ENST00000585776.1	-	0	1039				SPATA31D4_ENST00000341875.4_RNA																							CGTGAACCCATAGAAATCTTC	0.428000													3	45					0	0	0.115264	0	0
SLC36A1	206358	broad.mit.edu	37	5	150838431	150838431	+	Silent	SNP	G	G	A	rs142064945		TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr5:150838431G>A	ENST00000243389.3	+	2	301	c.78G>A	c.(76-78)tcG>tcA	p.S26S	SLC36A1_ENST00000521925.1_Silent_p.S26S|SLC36A1_ENST00000521351.1_3'UTR|SLC36A1_ENST00000429484.2_Silent_p.S26S|SLC36A1_ENST00000520701.1_Silent_p.S26S	NM_078483.2	NP_510968.2	Q7Z2H8	S36A1_HUMAN	solute carrier family 36 (proton/amino acid symporter), member 1	26					cellular nitrogen compound metabolic process|ion transport	endoplasmic reticulum|integral to membrane|lysosomal membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			endometrium(5)|kidney(9)|lung(8)|skin(2)|urinary_tract(1)	25		Medulloblastoma(196;0.091)|all_hematologic(541;0.103)|all_neural(839;0.138)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Glycine(DB00145)|L-Alanine(DB00160)	AGAGCCCGTCGGAAGGCCTCA	0.602000													31	52					0	0	0.750413	0	0
KIF24	347240	broad.mit.edu	37	9	34259681	34259681	+	Missense_Mutation	SNP	C	C	T			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr9:34259681C>T	ENST00000379166.2	-	10	1657	c.1538G>A	c.(1537-1539)gGc>gAc	p.G513D	KIF24_ENST00000345050.2_Missense_Mutation_p.G379D|KIF24_ENST00000379174.3_Missense_Mutation_p.G379D|KIF24_ENST00000402558.2_Missense_Mutation_p.G513D	NM_194313.2	NP_919289.2	Q5T7B8	KIF24_HUMAN	kinesin family member 24	513					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			breast(1)|central_nervous_system(1)|endometrium(5)|large_intestine(4)|liver(1)|lung(13)|prostate(3)|skin(1)|stomach(1)|upper_aerodigestive_tract(2)	32			LUSC - Lung squamous cell carcinoma(29;0.0107)			TTTGGCATTGCCGATGAAAGA	0.493000													6	232					0	0	0.248553	0	0
HERC2	8924	broad.mit.edu	37	15	28375699	28375699	+	Silent	SNP	G	G	A	rs61756151	byFrequency	TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr15:28375699G>A	ENST00000261609.7	-	82	12720	c.12612C>T	c.(12610-12612)tgC>tgT	p.C4204C		NM_004667.5	NP_004658.3	O95714	HERC2_HUMAN	HECT and RLD domain containing E3 ubiquitin protein ligase 2	4204					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			NS(1)|autonomic_ganglia(1)|breast(3)|central_nervous_system(3)|cervix(3)|endometrium(20)|kidney(11)|large_intestine(33)|lung(95)|ovary(7)|prostate(8)|skin(7)|upper_aerodigestive_tract(8)|urinary_tract(4)	204		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		ACTGGGATCCGCATTCCACTT	0.418000													7	406					0	0	0.248553	0	0
NUDT12	83594	broad.mit.edu	37	5	102894748	102894748	+	Missense_Mutation	SNP	G	G	A			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr5:102894748G>A	ENST00000230792.2	-	3	724	c.628C>T	c.(628-630)Ctt>Ttt	p.L210F	NUDT12_ENST00000507423.1_Missense_Mutation_p.L192F	NM_031438.2	NP_113626.1	Q9BQG2	NUD12_HUMAN	nudix (nucleoside diphosphate linked moiety X)-type motif 12	210						nucleus|peroxisome	metal ion binding|NAD+ diphosphatase activity			endometrium(1)|kidney(1)|large_intestine(2)|liver(1)|lung(6)|urinary_tract(1)	12		all_cancers(142;6.38e-08)|all_epithelial(76;1.99e-10)|Prostate(80;0.0138)|Lung NSC(167;0.0212)|Colorectal(57;0.0247)|all_lung(232;0.0283)|Ovarian(225;0.0423)		Epithelial(69;9.3e-13)|COAD - Colon adenocarcinoma(37;0.0221)		GCATAATTAAGTAGTTTGTCT	0.403000													20	201					0	0	0.557998	0	0
DNAH3	55567	broad.mit.edu	37	16	21108814	21108814	+	Missense_Mutation	SNP	T	T	C			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr16:21108814T>C	ENST00000261383.3	-	18	2526	c.2527A>G	c.(2527-2529)Aat>Gat	p.N843D	DNAH3_ENST00000415178.1_Missense_Mutation_p.N843D	NM_017539.1	NP_060009.1	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	843	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			NS(3)|autonomic_ganglia(1)|breast(12)|central_nervous_system(3)|cervix(2)|endometrium(15)|haematopoietic_and_lymphoid_tissue(4)|kidney(10)|large_intestine(42)|liver(2)|lung(57)|ovary(14)|pancreas(1)|prostate(7)|skin(11)|stomach(5)|upper_aerodigestive_tract(7)|urinary_tract(6)	202				GBM - Glioblastoma multiforme(48;0.207)		TCCTCCTTATTGATCAACTGC	0.478000													4	126					0	0	0.184627	0	0
KRT25	147183	broad.mit.edu	37	17	38907252	38907252	+	Missense_Mutation	SNP	C	C	T			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr17:38907252C>T	ENST00000312150.4	-	5	971	c.911G>A	c.(910-912)cGc>cAc	p.R304H		NM_181534.3	NP_853512.1	Q7Z3Z0	K1C25_HUMAN	keratin 25	304	Coil 2.|Rod.					cytoplasm|intermediate filament	structural molecule activity			endometrium(1)|large_intestine(4)|lung(5)|ovary(2)|prostate(4)	16		Breast(137;0.00526)				TTGAAGAGTGCGCTTCATTTC	0.473000													4	174					0	0	0.150653	0	0
PACSIN3	29763	broad.mit.edu	37	11	47200712	47200712	+	Missense_Mutation	SNP	C	C	T			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr11:47200712C>T	ENST00000539589.1	-	8	1240	c.898G>A	c.(898-900)Gag>Aag	p.E300K	PACSIN3_ENST00000298838.6_Missense_Mutation_p.E300K	NM_001184975.1	NP_001171904.1	Q9UKS6	PACN3_HUMAN	protein kinase C and casein kinase substrate in neurons 3	300					endocytosis|negative regulation of endocytosis|positive regulation of membrane protein ectodomain proteolysis	cytoplasm|plasma membrane	cytoskeletal protein binding			central_nervous_system(1)|endometrium(3)|kidney(1)|large_intestine(1)|lung(5)	11						ACACATGCCTCGAACTGTGGC	0.627000													80	207					0	0	0.870114	0	0
KIF14	9928	broad.mit.edu	37	1	200584483	200584483	+	Splice_Site	SNP	G	G	A			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr1:200584483G>A	ENST00000367350.4	-	3	1805	c.1367_splice	c.e3+1	p.T456_splice		NM_014875.2	NP_055690.1	Q15058	KIF14_HUMAN	kinesin family member 14	456	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule|nucleus|spindle	ATP binding|microtubule motor activity|protein binding			NS(1)|breast(5)|central_nervous_system(2)|endometrium(8)|kidney(8)|large_intestine(15)|lung(13)|ovary(3)|prostate(2)|skin(3)|urinary_tract(1)	61						TACAACTTACGTATATGATTT	0.383000													4	205					0	0	0.184627	0	0
KIFC1	3833	broad.mit.edu	37	6	33374019	33374019	+	Missense_Mutation	SNP	G	G	A			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr6:33374019G>A	ENST00000428849.2	+	8	2033	c.1583G>A	c.(1582-1584)cGc>cAc	p.R528H		NM_002263.3	NP_002254.2	Q9BW19	KIFC1_HUMAN	kinesin family member C1	528	Kinesin-motor.				blood coagulation|cell division|microtubule-based movement|mitotic sister chromatid segregation	early endosome|microtubule|microtubule associated complex|microtubule organizing center|nucleus|spindle	ATP binding|microtubule motor activity			endometrium(1)|kidney(1)|large_intestine(1)|lung(6)|prostate(3)|skin(1)	13						GCTGTGGCCCGCACAGCCCAG	0.607000													4	122					0	0	0.150653	0	0
PARG	8505	broad.mit.edu	37	10	51093329	51093329	+	Missense_Mutation	SNP	C	C	T			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr10:51093329C>T	ENST00000402038.3	-	4	294	c.295G>A	c.(295-297)Gca>Aca	p.A99T		NM_003631.2	NP_003622.2	Q86W56	PARG_HUMAN	poly (ADP-ribose) glycohydrolase	584					carbohydrate metabolic process	nucleus	poly(ADP-ribose) glycohydrolase activity	p.A584T(1)		endometrium(5)|kidney(2)|lung(1)|ovary(2)	10				Epithelial(53;0.213)		TGAGCTTCTGCTTCTTCAAGT	0.318000													5	167					0	0	0.184627	0	0
WNK1	65125	broad.mit.edu	37	12	995245	995245	+	Missense_Mutation	SNP	G	G	T			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr12:995245G>T	ENST00000537687.1	+	19	6698	c.6055G>T	c.(6055-6057)Gct>Tct	p.A2019S	WNK1_ENST00000535572.1_Missense_Mutation_p.A1512S|WNK1_ENST00000530271.2_Missense_Mutation_p.A2257S|WNK1_ENST00000315939.6_Missense_Mutation_p.A1759S|WNK1_ENST00000340908.4_Missense_Mutation_p.A1352S	NM_001184985.1|NM_213655.4	NP_001171914.1|NP_998820.3	Q9H4A3	WNK1_HUMAN	WNK lysine deficient protein kinase 1	1759					intracellular protein kinase cascade|ion transport|neuron development	cytoplasm	ATP binding|protein binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			breast(7)|central_nervous_system(1)|endometrium(3)|kidney(6)|large_intestine(15)|lung(43)|ovary(6)|prostate(3)|skin(7)|stomach(8)|upper_aerodigestive_tract(3)|urinary_tract(2)	104	all_cancers(10;0.00611)|all_epithelial(11;0.00825)|all_lung(10;0.0331)|Ovarian(42;0.0512)|Lung NSC(10;0.0632)		Epithelial(1;1.74e-08)|all cancers(1;7.04e-08)|OV - Ovarian serous cystadenocarcinoma(31;0.000423)|BRCA - Breast invasive adenocarcinoma(9;0.0149)|Colorectal(1;0.0197)			TCTAACTAAGGCTCCGGTAAA	0.398000													29	88					6.00712e-18	7.15742e-18	0.760397	1	0
ATXN1	6310	broad.mit.edu	37	6	16328215	16328215	+	Silent	SNP	C	C	T	rs114230242	byFrequency	TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr6:16328215C>T	ENST00000244769.4	-	8	1263	c.327G>A	c.(325-327)ccG>ccA	p.P109P	ATXN1_ENST00000436367.1_Silent_p.P109P	NM_000332.3	NP_000323.2	P54253	ATX1_HUMAN	ataxin 1	109					cell death|negative regulation of transcription, DNA-dependent|nuclear export|RNA processing	cytoplasm|nuclear inclusion body|nuclear matrix|nucleoplasm	identical protein binding|poly(G) RNA binding|poly(U) RNA binding|protein binding|protein C-terminus binding|protein self-association			NS(1)|breast(1)|central_nervous_system(2)|cervix(1)|endometrium(2)|kidney(3)|large_intestine(11)|lung(12)|prostate(2)|skin(7)|upper_aerodigestive_tract(2)	44	Breast(50;0.063)|Ovarian(93;0.0733)	all_hematologic(90;0.000682)|Ovarian(999;0.00973)				TCCCTGGCTGCGGGGTGGCGT	0.642000													28	58					0	0	0.750413	0	0
UQCRC1	7384	broad.mit.edu	37	3	48638261	48638261	+	Missense_Mutation	SNP	G	G	A			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr3:48638261G>A	ENST00000203407.5	-	9	1395	c.979C>T	c.(979-981)Cca>Tca	p.P327S		NM_003365.2	NP_003356.2	P31930	QCR1_HUMAN	ubiquinol-cytochrome c reductase core protein I	327					aerobic respiration|proteolysis		metalloendopeptidase activity|ubiquinol-cytochrome-c reductase activity|zinc ion binding			breast(1)|endometrium(2)|large_intestine(2)|lung(2)|ovary(2)|pancreas(1)|prostate(4)|skin(1)|urinary_tract(1)	16				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)	Atovaquone(DB01117)	GAAGCCAGTGGGCTGGACAGG	0.597000													4	83					0	0	0.217242	0	0
OR2C3	81472	broad.mit.edu	37	1	247695757	247695757	+	Silent	SNP	G	G	A	rs61746303	byFrequency	TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr1:247695757G>A	ENST00000366487.3	-	2	418	c.57C>T	c.(55-57)tcC>tcT	p.S19S	GCSAML_ENST00000366489.1_Intron|GCSAML_ENST00000531662.1_Intron|GCSAML_ENST00000527084.1_Intron|GCSAML_ENST00000527541.1_Intron|GCSAML_ENST00000366491.2_Intron|GCSAML_ENST00000463359.1_Intron|GCSAML_ENST00000366490.3_Intron	NM_198074.4	NP_932340.3	Q8N628	OR2C3_HUMAN	olfactory receptor, family 2, subfamily C, member 3	19					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.S19S(1)|p.S18S(1)		breast(1)|endometrium(5)|large_intestine(2)|lung(31)|ovary(1)|prostate(1)|skin(2)	43	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0242)	OV - Ovarian serous cystadenocarcinoma(106;0.0241)			AGGGTCGTGTGGAGAAGCCCA	0.488000													7	116					0	0	0.335167	0	0
PEG3	5178	broad.mit.edu	37	19	57327002	57327002	+	Silent	SNP	A	A	G			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr19:57327002A>G	ENST00000326441.9	-	10	3171	c.2808T>C	c.(2806-2808)cgT>cgC	p.R936R	ZIM2_ENST00000593711.1_Intron|PEG3_ENST00000423103.2_Silent_p.R936R|PEG3_ENST00000598410.1_Silent_p.R812R|ZIM2_ENST00000391708.3_Intron|ZIM2_ENST00000601070.1_Intron|ZIM2_ENST00000599935.1_Intron|ZIM2_ENST00000221722.5_Intron|PEG3_ENST00000593695.1_Silent_p.R810R	NM_006210.2	NP_006201.1	Q9GZU2	PEG3_HUMAN	paternally expressed 3	936					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			NS(1)|biliary_tract(4)|breast(2)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(9)|large_intestine(27)|lung(84)|ovary(8)|pancreas(5)|prostate(6)|skin(8)|stomach(2)|upper_aerodigestive_tract(6)	170		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		TCTTTTTAGCACGAGCCTTCT	0.453000													70	232					0	0	0.870114	0	0
IGHV3-21	28444	broad.mit.edu	37	14	106691745	106691745	+	RNA	SNP	G	G	A			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr14:106691745G>A	ENST00000390607.2	-	0	357																											AGTTCTTGGCGTTGTCTCTGG	0.512000													46	158					0	0	0.870114	0	0
LRP4	4038	broad.mit.edu	37	11	46924371	46924371	+	Missense_Mutation	SNP	G	G	T			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr11:46924371G>T	ENST00000378623.1	-	2	404	c.162C>A	c.(160-162)gaC>gaA	p.D54E		NM_002334.3	NP_002325.2	O75096	LRP4_HUMAN	low density lipoprotein receptor-related protein 4	54	LDL-receptor class A 1.				endocytosis|negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to membrane	calcium ion binding|receptor activity			breast(7)|central_nervous_system(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(13)|lung(24)|ovary(3)|pancreas(2)|prostate(5)|skin(2)|stomach(2)|upper_aerodigestive_tract(1)	70				Lung(87;0.159)		CGCAGTCATTGTCTCCATCAC	0.607000													21	58					2.89027e-11	3.37198e-11	0.624587	1	0
GPRASP1	9737	broad.mit.edu	37	X	101913005	101913005	+	Silent	SNP	C	C	T			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chrX:101913005C>T	ENST00000537097.1	+	6	4977	c.4164C>T	c.(4162-4164)gaC>gaT	p.D1388D	GPRASP1_ENST00000444152.1_Silent_p.D1388D|RP4-769N13.7_ENST00000602441.1_RNA|GPRASP1_ENST00000361600.5_Silent_p.D1388D|GPRASP1_ENST00000415986.1_Silent_p.D1388D	NM_001184727.1	NP_001171656.1	Q5JY77	GASP1_HUMAN	G protein-coupled receptor associated sorting protein 1	1388	OPRD1-binding.					cytoplasm	protein binding			NS(1)|breast(3)|cervix(1)|endometrium(7)|kidney(2)|large_intestine(10)|lung(29)|ovary(2)|prostate(2)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	60						ATCAAAATGACCCTGAAGGGG	0.368000													3	28					0	0	0.115264	0	0
FBXO43	286151	broad.mit.edu	37	8	101154158	101154158	+	Silent	SNP	A	A	G			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr8:101154158A>G	ENST00000428847.2	-	2	640	c.324T>C	c.(322-324)ccT>ccC	p.P108P		NM_001029860.3	NP_001025031.2	Q4G163	FBX43_HUMAN	F-box protein 43	108					meiosis		zinc ion binding			endometrium(1)|kidney(4)|large_intestine(5)|lung(14)|prostate(1)|skin(5)|urinary_tract(1)	31	all_cancers(14;0.000139)|all_epithelial(15;2.84e-07)|Lung NSC(17;0.000274)|all_lung(17;0.000798)		Epithelial(11;1.17e-09)|all cancers(13;1.34e-07)|OV - Ovarian serous cystadenocarcinoma(57;3.82e-05)|STAD - Stomach adenocarcinoma(118;0.0957)			CTGAAGTTTCAGGGTGCTCAT	0.358000													3	209					0	0	0.115264	0	0
CCDC108	255101	broad.mit.edu	37	2	219892412	219892412	+	Missense_Mutation	SNP	C	C	A			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr2:219892412C>A	ENST00000341552.5	-	13	2254	c.2171G>T	c.(2170-2172)tGc>tTc	p.C724F	CCDC108_ENST00000453220.1_Missense_Mutation_p.C724F|CCDC108_ENST00000441968.1_Missense_Mutation_p.C724F|CCDC108_ENST00000409865.3_Missense_Mutation_p.C713F|CCDC108_ENST00000410037.1_Missense_Mutation_p.C659F	NM_194302.2	NP_919278.2	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108	724						integral to membrane	structural molecule activity			autonomic_ganglia(1)|breast(1)|cervix(1)|endometrium(4)|kidney(2)|large_intestine(18)|liver(1)|lung(34)|ovary(2)|pancreas(1)|prostate(6)|skin(5)|stomach(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	80		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CGTGTAAAGGCAGTTGGGGTG	0.607000													11	124					3.27435e-08	3.74212e-08	0.457914	1	0
TM7SF3	51768	broad.mit.edu	37	12	27143451	27143451	+	Missense_Mutation	SNP	G	G	A			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr12:27143451G>A	ENST00000343028.4	-	6	1025	c.800C>T	c.(799-801)gCt>gTt	p.A267V	TM7SF3_ENST00000542667.1_Intron	NM_016551.2	NP_057635.1	Q9NS93	TM7S3_HUMAN	transmembrane 7 superfamily member 3	267						integral to membrane|plasma membrane				breast(1)|endometrium(2)|kidney(1)|large_intestine(4)|lung(6)|prostate(1)|stomach(1)|upper_aerodigestive_tract(2)	18	Colorectal(261;0.0847)					AATGTAGGCAGCAGATGTATT	0.448000													4	162					0	0	0.184627	0	0
MLF1	4291	broad.mit.edu	37	3	158315963	158315963	+	Missense_Mutation	SNP	A	A	G			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr3:158315963A>G	ENST00000359117.5	+	4	535	c.299A>G	c.(298-300)cAg>cGg	p.Q100R	MLF1_ENST00000355893.5_Missense_Mutation_p.Q125R|MLF1_ENST00000482628.1_Missense_Mutation_p.Q100R|MLF1_ENST00000478894.2_Missense_Mutation_p.Q115R|MLF1_ENST00000484955.1_Missense_Mutation_p.Q100R|MLF1_ENST00000392822.3_Missense_Mutation_p.Q156R|MLF1_ENST00000469452.1_Intron|MLF1_ENST00000471745.1_Missense_Mutation_p.Q115R|MLF1_ENST00000497004.1_3'UTR	NM_001130156.2	NP_001123628.1	P58340	MLF1_HUMAN	myeloid leukemia factor 1	125	Interaction with COPS3.				cell cycle arrest|myeloid progenitor cell differentiation|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein domain specific binding			large_intestine(3)	3		Melanoma(1037;0.000458)|Prostate(884;0.0235)|all_neural(597;0.0299)	Lung(72;0.00199)|LUSC - Lung squamous cell carcinoma(72;0.00256)			AAGGTTTTTCAGGCCTCAACT	0.393000			T	NPM1	AML								3	170					0	0	0.115264	0	0
SLC22A23	63027	broad.mit.edu	37	6	3324228	3324228	+	Silent	SNP	G	G	A	rs151139208	byFrequency	TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr6:3324228G>A	ENST00000436008.2	-	4	1384	c.922C>T	c.(922-924)Ctg>Ttg	p.L308L	SLC22A23_ENST00000380302.4_Silent_p.L27L|SLC22A23_ENST00000490273.1_Silent_p.L27L|SLC22A23_ENST00000433689.2_5'UTR|SLC22A23_ENST00000380298.2_Silent_p.L308L|SLC22A23_ENST00000406686.3_Silent_p.L308L			A1A5C7	S22AN_HUMAN	solute carrier family 22, member 23	308					ion transport	integral to membrane	transmembrane transporter activity			endometrium(3)|kidney(1)|large_intestine(2)|lung(6)|ovary(1)|prostate(1)	14	Ovarian(93;0.0493)	all_hematologic(90;0.0905)				GGGGGGCACAGCTCTATTCCT	0.602000													13	34					0	0	0.435327	0	0
RRP1B	23076	broad.mit.edu	37	21	45096683	45096683	+	Silent	SNP	T	T	C			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr21:45096683T>C	ENST00000340648.4	+	8	801	c.684T>C	c.(682-684)ccT>ccC	p.P228P		NM_015056.2	NP_055871.1	Q14684	RRP1B_HUMAN	ribosomal RNA processing 1B	228					rRNA processing	cytosol|nucleolus|preribosome, small subunit precursor	protein binding	p.P228P(1)		cervix(1)|endometrium(1)|kidney(3)|large_intestine(4)|lung(3)|ovary(1)|pancreas(1)|prostate(3)|skin(3)|stomach(1)	21				STAD - Stomach adenocarcinoma(101;0.178)		CTTTTGTGCCTGAAGAGACGA	0.507000													3	119					0	0	0.115264	0	0
GUCY2F	2986	broad.mit.edu	37	X	108638655	108638655	+	Missense_Mutation	SNP	G	G	A			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chrX:108638655G>A	ENST00000218006.2	-	12	2630	c.2339C>T	c.(2338-2340)gCc>gTc	p.A780V		NM_001522.2	NP_001513.2	P51841	GUC2F_HUMAN	guanylate cyclase 2F, retinal	780	Protein kinase.				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			breast(3)|central_nervous_system(2)|endometrium(5)|kidney(6)|large_intestine(14)|lung(33)|prostate(3)|skin(1)	67						TTCTGGAGGGGCATGCTCAGG	0.458000													4	191					0	0	0.217242	0	0
BRD1	23774	broad.mit.edu	37	22	50217548	50217548	+	Missense_Mutation	SNP	A	A	G			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr22:50217548A>G	ENST00000216267.8	-	1	904	c.418T>C	c.(418-420)Tac>Cac	p.Y140H	BRD1_ENST00000404034.1_Missense_Mutation_p.Y140H|BRD1_ENST00000457780.2_Missense_Mutation_p.Y140H|BRD1_ENST00000404760.1_Missense_Mutation_p.Y140H	NM_014577.1	NP_055392.1	O95696	BRD1_HUMAN	bromodomain containing 1	140					histone H3 acetylation	MOZ/MORF histone acetyltransferase complex	zinc ion binding			endometrium(6)|kidney(3)|large_intestine(5)|lung(17)|ovary(1)|pancreas(1)|prostate(3)|skin(1)	37		all_cancers(38;6.11e-10)|all_epithelial(38;8.06e-09)|all_lung(38;6.64e-05)|Lung NSC(38;0.0011)|Breast(42;0.00235)|Ovarian(80;0.0139)|Lung SC(80;0.164)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0369)|BRCA - Breast invasive adenocarcinoma(115;0.21)		ATGAACTTGTAGTACACAGGA	0.637000													3	135					0	0	0.150653	0	0
ARHGAP35	2909	broad.mit.edu	37	19	47424644	47424644	+	Silent	SNP	G	G	A			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr19:47424644G>A	ENST00000404338.3	+	1	2712	c.2712G>A	c.(2710-2712)caG>caA	p.Q904Q		NM_004491.4	NP_004482.4	Q9NRY4	RHG35_HUMAN	Rho GTPase activating protein 35	904					axon guidance|negative regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol	DNA binding|Rho GTPase activator activity|transcription corepressor activity										GTAGGGAACAGCTAACTGAGG	0.463000													52	127					0	0	0.870114	0	0
TFG	10342	broad.mit.edu	37	3	100432611	100432611	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr3:100432611delA	ENST00000240851.4	+	2	422	c.82delA	c.(82-84)atfs	p.N28fs	TFG_ENST00000490574.1_Frame_Shift_Del_p.N28fs|TFG_ENST00000476228.1_Frame_Shift_Del_p.N28fs|TFG_ENST00000418917.2_Frame_Shift_Del_p.N28fs	NM_001195478.1|NM_001195479.1|NM_006070.5	NP_001182407.1|NP_001182408.1|NP_006061.2	Q92734	TFG_HUMAN	TRK-fused gene	28					positive regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm	signal transducer activity		TFG/NR4A3(2)|TFG/NTRK1_ENST00000392302(5)|TFG/ALK(9)	large_intestine(4)|lung(2)|prostate(1)|stomach(1)	8						TCCTATTCATAATGAAGATAT	0.373			T	"""NTRK1, ALK"""	"""papillary thyroid, ALCL, NSCLC"""								71	163	---	---	---	---					
LOC100505938	100505938	broad.mit.edu	37	7	8363958	8363959	+	RNA	INS	-	-	AGAA	rs141819780	by1000genomes	TCGA-BP-4760-01A-02D-1421-08	TCGA-BP-4760-11A-01D-1421-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7a1f1d02-342e-47f2-a6c7-21ca53464fb8	4a66fa20-29ff-4b27-b2a9-5a2a6e6c6956	g.chr7:8363958_8363959insAGAA	ENST00000424460.1	+	0	493				RP4-594A5.1_ENST00000435967.1_lincRNA																							aagaaagaaagagaaagaaaga	0.406													8	8	---	---	---	---					
