Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
MTOR	2475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	11184573	11184573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	MTOR-1439	NM_004958	exon47	c.C6644A	p.S2215Y	CGAAGAGATGTTG	.	71	24	83	0	.	11	9	2	0	0
BEST4	266675	hgsc.bcm.edu	37	1	45252159	45252159	+	Missense_Mutation	SNP	T	T	C	rs41306591		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	BEST4-91	NM_153274	exon3	c.A457G	p.T153A	CCATGGTGGGGAA	.	8	3	2	1	T|0.997;C|0.003	0	0	0	0	0
MROH7	374977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	55118778	55118778	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	.	NM_001039464	exon3	c.A179C	p.D60A	TTCCAGATCTTAA	.	148	46	144	0	.	0	0	0	0	0
TRIM33	51592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	114948195	114948195	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	TRIM33-1351	NM_033020	exon15	c.C2605T	p.H869Y	ACCTGTGCATGAG	.	243	65	243	0	.	5	3	2	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228467538	228467538	+	Silent	SNP	C	C	G	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	OBSCN-403	NM_001271223	exon33	c.C8700G	p.L2900L	AGTCCTCACACGG	.	29	2	24	0	.	1	1	0	0	0
RYR2	6262	hgsc.bcm.edu	37	1	237804221	237804221	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	RYR2-158	NM_001035	exon47	c.C7140G	p.D2380E	AGATGACACTATC	.	30	2	55	0	.	0	0	0	0	0
CCDC7	221016	broad.mit.edu	37	10	32854549	32854549	+	Splice_Site	SNP	G	G	T	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	CCDC7-90	NM_145023	exon15	c.1197+1G>T	.	TTACAGGTAAAGG	.	45	3	43	0	.	0	0	0	0	0
ZNF488	118738	broad.mit.edu	37	10	48371023	48371023	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	ZNF488-91	NM_153034	exon2	c.G491T	p.S164I	CCTTTAGCAAACC	.	88	5	124	0	.	0	0	0	0	0
C10orf137	26098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	127442312	127442312	+	Missense_Mutation	SNP	A	A	G	rs199695348		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	C10orf137-590	NM_001202438	exon24	c.A3443G	p.N1148S	GTCTCAATCGAGA	.	120	42	132	0	A|0.999;G|0.001	6	4	2	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1268488	1268488	+	Missense_Mutation	SNP	C	C	T	rs200106077		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	.	NM_002458	exon31	c.C10378T	p.P3460S	TCCCTGCCCCCCA	.	112	13	95	2	.	0	0	0	0	0
TCN1	6947	bcgsc.ca	37	11	59622265	59622265	+	Silent	SNP	A	A	G	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	TCN1-92	NM_001062	exon7	c.T981C	p.P327P	GTCAGGAGGTGTC	.	150	5	94	0	.	121	121	0	0	0
SLCO2B1	11309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	74883496	74883496	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	SLCO2B1-154	NM_007256	exon7	c.G854C	p.G285A	CTGCCGGTGCAGT	.	103	30	84	0	.	10	10	0	0	0
ARHGEF12	23365	broad.mit.edu	37	11	120300474	120300474	+	Silent	SNP	C	C	T	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	ARHGEF12-661	NM_015313	exon10	c.C717T	p.I239I	AGAGATCCAAGAG	.	103	4	85	0	.	17	16	1	0	0
GTSF1	121355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	54857070	54857070	+	Silent	SNP	A	A	G	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	GTSF1-90	NM_144594	exon4	c.T129C	p.D43D	TGCAACATCAGGA	.	93	27	85	0	.	0	0	0	0	0
AGAP2	116986	hgsc.bcm.edu	37	12	58120409	58120409	+	Missense_Mutation	SNP	C	C	T	rs199546118		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	AGAP2-716	NM_001122772	exon19	c.G3505A	p.A1169T	GCGTGGCGGTGAT	.	7	6	3	0	.	0	0	0	0	0
NAV3	89795	hgsc.bcm.edu	37	12	78574710	78574710	+	Silent	SNP	A	A	G	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	NAV3-279	NM_014903	exon29	c.A5511G	p.T1837T	TAACACAGCTAAG	.	75	26	38	0	.	0	0	0	0	0
SHISA2	387914	hgsc.bcm.edu	37	13	26625047	26625047	+	Silent	SNP	G	G	A	rs4770911		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	SHISA2-69	NM_001007538	exon1	c.C67T	p.L23L	CAGCCAGCAGCAG	.	9	5	3	1	G|0.870;A|0.130	1	0	1	0	0
FRY	10129	bcgsc.ca	37	13	32811616	32811616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	FRY-142	NM_023037	exon44	c.G5911A	p.A1971T	AACACCGCAACTG	.	84	6	86	1	.	4	4	0	0	0
MYH6	4624	hgsc.bcm.edu;broad.mit.edu	37	14	23859655	23859655	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	MYH6-94	NM_002471	exon26	c.G3343C	p.A1115P	TGCGTGCCTGGGT	.	43	14	39	0	.	0	0	0	0	0
COCH	1690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	31353851	31353851	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	COCH-228	NM_004086	exon9	c.A722C	p.N241T	GGGGTAATTCCAA	.	71	18	64	0	.	0	0	0	0	0
DTD2	112487	hgsc.bcm.edu	37	14	31926584	31926584	+	Missense_Mutation	SNP	G	G	A	rs3087952		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	.	NM_080664	exon1	c.C16T	p.R6W	GAATCCGGCTACC	.	11	2	11	1	.	4	2	2	0	0
TRAF7	84231	hgsc.bcm.edu	37	16	2222231	2222231	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	TRAF7-661	NM_032271	exon8	c.T515G	p.V172G	TGGTGGTGAACAA	.	56	3	61	0	.	26	25	0	0	1
CCDC64B	146439	hgsc.bcm.edu	37	16	3081004	3081004	+	Nonsense_Mutation	SNP	G	G	A	rs199875074		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	.	NM_001103175	exon2	c.C430T	p.R144X	GTTCTCGCCCACT	.	12	8	9	2	.	0	0	0	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA	.	404	64	373	57	.	14	0	14	0	0
ABCC3	8714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48734448	48734448	+	Silent	SNP	C	C	T	rs139452504		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	ABCC3-93	NM_003786	exon4	c.C390T	p.G130G	GCAGGGCGTACAG	.	137	27	118	1	C|0.998;T|0.002	10	8	2	0	0
EPX	8288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	56281634	56281634	+	Silent	SNP	G	G	A	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	EPX-92	NM_000502	exon12	c.G1998A	p.L666L	GGCCCTGAGCAGA	.	113	35	123	1	.	1	0	1	0	0
CCDC57	284001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	80129603	80129603	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	CCDC57-24	NM_198082	exon12	c.G1856C	p.S619T	CGGACGCTGGGCT	.	90	15	79	0	.	3	3	0	0	0
EPB41L3	23136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	5416056	5416056	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	EPB41L3-95	NM_012307	exon13	c.A1828T	p.N610Y	AAAGGTTGGGGAA	.	138	37	137	0	.	0	0	0	0	0
PRAM1	84106	hgsc.bcm.edu	37	19	8563524	8563524	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	.	NM_032152	exon2	c.G1168T	p.E390X	AGCTCTCGGAAGC	.	21	2	27	0	.	5	5	0	0	0
TMEM205	374882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11453637	11453637	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	TMEM205-22	NM_033408	exon4	c.C424A	p.Q142K	GCAGCTGGCGGTA	.	149	48	111	0	.	226	128	98	0	0
ANO8	57719	hgsc.bcm.edu	37	19	17439378	17439378	+	Missense_Mutation	SNP	G	G	A	rs73511896		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	ANO8-93	NM_020959	exon13	c.C1819T	p.L607F	CCAGGAGGCCCCC	.	9	5	3	1	G|0.992;A|0.008	1	1	0	0	0
CACNG8	59283	hgsc.bcm.edu	37	19	54485464	54485464	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	CACNG8-90	NM_031895	exon4	c.C639G	p.F213L	GTCGTTCATCCTG	.	37	2	40	0	.	0	0	0	0	0
ISOC2	79763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55966664	55966664	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	ISOC2-91	NM_024710	exon4	c.C430T	p.Q144X	GGACCTGCAGCCC	.	28	5	29	0	.	33	31	2	0	0
DHRS9	10170	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	169938176	169938176	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	DHRS9-90	NM_005771	exon5	c.G85A	p.D29N	ATCACTGATAAGT	.	134	7	121	0	.	0	0	0	0	0
CDCA7	83879	bcgsc.ca	37	2	174231883	174231883	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	CDCA7-91	NM_031942	exon9	c.G1191A	p.W397X	GAACTGGCATTGC	.	138	6	115	1	.	0	0	0	0	0
PGAP1	80055	hgsc.bcm.edu;broad.mit.edu	37	2	197781305	197781305	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	PGAP1-93	NM_024989	exon3	c.G314T	p.G105V	ATGGAGCCAATAG	.	47	9	48	0	.	0	0	0	0	0
SPAG16	79582	hgsc.bcm.edu	37	2	214204970	214204970	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	SPAG16-188	NM_024532	exon6	c.A620C	p.N207T	AAAAAAACAAATT	.	39	2	46	0	.	2	2	0	0	0
DHX35	60625	bcgsc.ca	37	20	37623476	37623476	+	Silent	SNP	C	C	A	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	DHX35-226	NM_021931	exon8	c.C595A	p.R199R	AAAAAGCGAGGGG	.	170	6	144	0	.	0	0	0	0	0
PTPRT	11122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	41306544	41306544	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	PTPRT-664	NM_007050	exon7	c.C1115A	p.P372Q	CCTGGCGGTCCCG	.	150	42	124	0	.	0	0	0	0	0
TMEM189	387521	hgsc.bcm.edu	37	20	48770156	48770156	+	Missense_Mutation	SNP	A	A	C	rs2026757		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	TMEM189-22	NM_199129	exon1	c.T19G	p.W7G	CCGGCCAGTTCTC	.	10	7	2	0	A|0.903;C|0.097	0	0	0	0	0
MYT1	4661	broad.mit.edu	37	20	62851191	62851191	+	Silent	SNP	C	C	T	rs117853857		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	MYT1-704	NM_004535	exon13	c.C2097T	p.D699D	TCCCGACGCCTCC	.	19	5	22	0	C|0.999;T|0.001	0	0	0	0	0
SLC9C1	285335	hgsc.bcm.edu	37	3	111983130	111983130	+	Silent	SNP	T	T	C	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	.	NM_183061	exon9	c.A939G	p.L313L	AGGAATTAGAAGT	.	28	2	11	0	.	0	0	0	0	0
CLCN2	1181	hgsc.bcm.edu	37	3	184075764	184075764	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	CLCN2-90	NM_001171087	exon5	c.C601T	p.P201S	CAAGCGGCATCCC	.	100	5	119	0	.	0	0	0	0	0
ITGA2	3673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	52366069	52366069	+	Silent	SNP	C	C	G	rs142557473	alternate_allele	TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	ITGA2-226	NM_002203	exon17	c.C2214G	p.P738P	TTGCCCCGAGCAC	.	114	34	57	0	C|1.000;T|0.000	11	6	5	0	0
ADAMTS19	171019	hgsc.bcm.edu	37	5	128797258	128797258	+	Silent	SNP	G	G	C	rs147557427		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	ADAMTS19-295	NM_133638	exon2	c.G537C	p.L179L	CCTGCTGCTCCGG	.	7	4	7	1	G|0.993;C|0.007	0	0	0	0	0
ANKHD1	54882	hgsc.bcm.edu	37	5	139828840	139828840	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	ANKHD1-185	NM_024668	exon7	c.C1192G	p.Q398E	GCAGATCAAGAGC	.	31	2	29	0	.	10	10	0	0	0
PCDHAC1	56135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140307713	140307713	+	Silent	SNP	A	A	G	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	PCDHAC1-28	NM_031882	exon1	c.A1236G	p.Q412Q	ATACCAAGTCCTG	.	99	22	90	0	.	0	0	0	0	0
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	169446069	169446069	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	DOCK2-97	NM_004946	exon33	c.A3338G	p.D1113G	TCTTCGACATGAT	.	308	74	350	1	.	3	3	0	0	0
HLA-A	3105	hgsc.bcm.edu	37	6	29910594	29910594	+	Missense_Mutation	SNP	G	G	A	rs199474366		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	HLA-A-92	NM_001242758	exon2	c.G134A	p.R45H	AGCCCCGCTTCAT	.	56	5	67	0	A|0.001;G|0.999	1765	1761	3	1	0
PKIB	5570	hgsc.bcm.edu	37	6	123022647	123022647	+	Splice_Site	SNP	T	T	C	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	PKIB-90	NM_001270394	exon6	c.13+2T>C	.	CCAGGGTATAGTT	.	21	2	21	0	.	0	0	0	0	0
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	47944905	47944905	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	PKD1L1-145	NM_138295	exon11	c.A1540T	p.N514Y	TTCCATTTGTGTA	.	174	37	221	0	.	0	0	0	0	0
ZKSCAN5	23660	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	99129235	99129235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	ZKSCAN5-91	NM_145102	exon7	c.G1883A	p.S628N	TGCACAGTGGGGA	.	85	5	84	0	.	10	10	0	0	0
VGF	7425	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	100806695	100806695	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	VGF-90	NM_003378	exon2	c.A1430T	p.E477V	TTCTCCTCCACCT	.	56	15	73	0	.	0	0	0	0	0
TBXAS1	6916	hgsc.bcm.edu;bcgsc.ca	37	7	139719838	139719838	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	TBXAS1-155	NM_030984	exon12	c.T1381C	p.X461Q	TGCAGCTAGAATC	.	79	4	100	0	.	16	16	0	0	0
CPA6	57094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	68397000	68397000	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	CPA6-92	NM_020361	exon7	c.C661T	p.P221S	TGGCTGGGTCACT	.	85	21	74	0	.	0	0	0	0	0
MROH1	727957	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	145267981	145267981	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	.	NM_001099280	exon13	c.C1226T	p.P409L	CTGCTCCGCAGCC	.	118	21	134	0	.	1	1	0	0	0
WNK2	65268	hgsc.bcm.edu	37	9	96055159	96055159	+	Silent	SNP	C	C	T	rs56125631	bycluster	TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	WNK2-765	NM_006648	exon22	c.C5412T	p.P1804P	CGAGCCCGTGTCC	.	5	3	10	1	C|0.986;T|0.014	0	0	0	0	0
FLJ44635	0	ucsc.edu	37	X	71379997	71379997	+	Silent	SNP	C	C	G	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	FLJ44635-108	NM_207422	exon2	c.C318G	p.G106G	CAAAGGCAAACTG	.	117	1	122	0	.	4	0	4	0	0
RGAG1	57529	bcgsc.ca	37	X	109695057	109695057	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	RGAG1-132	NM_020769	exon3	c.A1212T	p.R404S	AGTAAGAGCTTTA	.	647	180	579	0	.	0	0	0	0	0
MBNL3	55796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	131540269	131540269	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	MBNL3-130	NM_018388	exon2	c.A329T	p.Q110L	GACATTTGAGCGT	.	183	62	180	0	.	0	0	0	0	0
CDR1	1038	hgsc.bcm.edu	37	X	139866440	139866440	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	CDR1-130	NM_004065	exon1	c.T92C	p.V31A	AAAGGTACGTCTT	.	299	16	145	2	.	0	0	0	0	0
SLC6A8	6535	broad.mit.edu	37	X	152960547	152960547	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	SLC6A8-131	NM_005629	exon13	c.C1786T	p.Q596X	CTGACCCAGCCCA	.	23	3	35	0	.	77	77	0	0	0
ATP6AP1	537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	153657422	153657422	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	ATP6AP1-138	NM_001183	exon2	c.C190A	p.H64N	GACACTCATGAAG	.	130	33	137	0	.	59	59	0	0	0
GPRIN2	9721	hgsc.bcm.edu	37	10	46999189	46999190	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	GPRIN2-90	NM_014696	exon3	c.309_310del	p.103_104del	.	.	68	11	65	0	.	0	0	0	0	0
TUBGCP5	114791	broad.mit.edu;bcgsc.ca	37	15	22872435	22872444	+	Frame_Shift_Del	DEL	AAACTGCCAT	AAACTGCCAT	-	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	AAACTGCCAT	AAACTGCCAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	TUBGCP5-91	NM_052903	exon22	c.2964_2973del	p.988_991del	TTTTAAAAACTGC	.	114	8	116	0	.	0	0	0	0	0
SPAG9	9043	broad.mit.edu	37	17	49063070	49063071	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	SPAG9-659	NM_001130528	exon23	c.3008_3009del	p.1003_1003del	ACTGAGAATCGAA	.	36	8	35	0	.	0	0	0	0	0
EIF4G1	1981	broad.mit.edu	37	3	184039744	184039746	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	GAA	GAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	EIF4G1-344	NM_001194946	exon11	c.1393_1395del	p.465_465del	GAAATGGAAGAAG	.	150	9	121	0	.	0	0	0	0	0
POLR2B	5431	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	57888371	57888373	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	POLR2B-92	NM_000938	exon18	c.2474_2476del	p.825_826del	.	.	81	13	62	0	.	0	0	0	0	0
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	79034426	79034426	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	CMYA5-77	NM_153610	exon2	c.9838delG	p.G3280fs	.	.	144	25	110	0	.	0	0	0	0	0
RGAG1	57529	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	109695056	109695056	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	RGAG1-132	NM_020769	exon3	c.1211delG	p.R404fs	.	.	661	185	585	0	.	0	0	0	0	0
APOB	338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	21224920	21224921	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	APOB-175	NM_000384	exon29	c.13374_13375insC	p.P4458fs	.	.	117	33	87	0	.	0	0	0	0	0
SUPT20HL1	100130302	hgsc.bcm.edu	37	X	24382372	24382373	+	Missense_Mutation	DNP	AT	AT	GC	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	.		exon1	c.T1496C	.	CTGCTATTGCTGC	.	6.0	2.0	10.0	1.0	.	0	0	0	0	0
