Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
ATAD3C	219293	bcgsc.ca	37	1	1392552	1392552	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	.	NM_001039211	exon8	c.C733G	p.R245G	CGGAAGCGAGCCA	.	142	78	97	0	.	0	0	0	0	0
PANK4	55229	bcgsc.ca	37	1	2447128	2447128	+	Missense_Mutation	SNP	T	T	C	rs202214872		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PANK4-158	NM_018216	exon10	c.A1247G	p.E416G	GGCCTCTCCAGCC	.	103	40	60	0	.	1	1	0	0	0
RERE	473	broad.mit.edu	37	1	8420609	8420609	+	Silent	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	RERE-515	NM_012102	exon19	c.A2958C	p.P986P	CAGGGGTGGGGGG	.	123	28	18	0	.	15	14	1	0	0
VPS13D	55187	ucsc.edu;bcgsc.ca	37	1	12337404	12337404	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	VPS13D-95	NM_015378	exon19	c.C3759A	p.Y1253X	TGGCTACTTTGAA	.	194	43	180	0	.	5	5	0	0	0
PLA2G2A	5320	bcgsc.ca	37	1	20304929	20304929	+	Silent	SNP	G	G	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PLA2G2A-650	NM_001161729	exon3	c.C129T	p.F43F	GCCGTAGAAGCCA	.	66	39	39	0	.	0	0	0	0	0
PHC2	1912	bcgsc.ca	37	1	33832972	33832972	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PHC2-227	NM_198040	exon6	c.A721C	p.T241P	TGGGGGTGGGGCC	.	375	80	220	3	.	3	3	0	0	0
ZMYM4	9202	bcgsc.ca	37	1	35870649	35870649	+	Missense_Mutation	SNP	T	T	G	rs200301387		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ZMYM4-291	NM_005095	exon24	c.T3554G	p.V1185G	TGGCTGTGGAGCC	.	61	25	115	0	.	11	11	0	0	0
FHL3	2275	bcgsc.ca	37	1	38463740	38463740	+	Missense_Mutation	SNP	A	A	C	rs201163097		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	FHL3-90	NM_004468	exon4	c.T396G	p.C132W	CTGTTCACAGCCA	.	190	80	142	0	.	9	9	0	0	0
MACF1	23499	bcgsc.ca	37	1	39845028	39845028	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	MACF1-165	NM_012090	exon50	c.A7244G	p.E2415G	GGCTGGAATCAAA	.	160	61	342	0	.	6	6	0	0	0
NSUN4	387338	bcgsc.ca	37	1	46806506	46806506	+	Missense_Mutation	SNP	C	C	G	rs201083296		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	NSUN4-90	NM_199044	exon1	c.C8G	p.A3G	TGGCTGCGCTGAC	.	42	24	25	0	.	10	5	5	0	0
DOCK7	85440	bcgsc.ca	37	1	62923219	62923219	+	Missense_Mutation	SNP	T	T	G	rs200939372		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	DOCK7-92	NM_001271999	exon48	c.A6337C	p.T2113P	GGCAGGTGACAGG	.	83	51	105	1	.	0	0	0	0	0
ALG6	29929	bcgsc.ca	37	1	63877638	63877638	+	Missense_Mutation	SNP	C	C	T	rs76393703		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ALG6-90	NM_013339	exon9	c.C722T	p.S241F	TGGCTTCCTTCGT	.	50	17	116	0	.	4	4	0	0	0
SGIP1	84251	bcgsc.ca	37	1	67154849	67154849	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SGIP1-93	NM_032291	exon16	c.G1334C	p.R445P	CTGCTCGACCAGC	.	247	59	436	3	.	1	1	0	0	0
FRRS1	391059	bcgsc.ca	37	1	100194174	100194174	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	FRRS1-91	NM_001013660	exon9	c.G881T	p.W294L	AACCTCCAAGCCA	.	94	43	135	0	.	0	0	0	0	0
CLCC1	23155	bcgsc.ca	37	1	109486197	109486197	+	Missense_Mutation	SNP	G	G	T	rs201600225		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CLCC1-91	NM_001048210	exon6	c.C602A	p.T201N	AGCTCAGTAGCCA	.	63	24	104	0	G|0.999;T|0.001	2	2	0	0	0
FCGR2A	2212	bcgsc.ca	37	1	161480669	161480669	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	FCGR2A-91	NM_001136219	exon5	c.T665G	p.V222G	TGGCTGTGGTCAT	.	285	161	177	0	.	26	23	3	0	0
ASTN1	460	bcgsc.ca	37	1	177030344	177030344	+	Missense_Mutation	SNP	T	T	C	rs201383783		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ASTN1-319	NM_004319	exon2	c.A341G	p.E114G	CCATTCTCCAGCC	.	67	32	202	1	T|0.999;C|0.001	0	0	0	0	0
TOR1AIP2	163590	bcgsc.ca	37	1	179815930	179815930	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TOR1AIP2-69	NM_001199260	exon7	c.T689G	p.V230G	GCCACAACAGCCA	.	60	31	116	2	.	3	2	1	0	0
GLUL	2752	bcgsc.ca	37	1	182354977	182354977	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	GLUL-90	NM_001033056	exon5	c.A521G	p.D174G	ACGATGTCCCTGC	.	174	81	226	2	.	124	106	18	0	0
TRMT1L	81627	bcgsc.ca	37	1	185112542	185112542	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TRMT1L-92	NM_030934	exon7	c.C806G	p.A269G	GCCAAAGCAGCCA	.	47	24	149	0	.	8	8	0	0	0
IPO9	55705	bcgsc.ca	37	1	201827623	201827623	+	Missense_Mutation	SNP	G	G	C	rs201551339		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	IPO9-228	NM_018085	exon12	c.G1270C	p.A424P	GCTGCTGCAGCCA	.	104	75	179	0	.	17	14	3	0	0
FCAMR	83953	bcgsc.ca	37	1	207135670	207135670	+	Missense_Mutation	SNP	C	C	A	rs199611731		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	FCAMR-91	NM_001170631	exon5	c.G540T	p.L180F	CACAAACAAGCCT	.	122	52	95	0	C|0.999;A|0.001	10	10	0	0	0
PLXNA2	5362	bcgsc.ca	37	1	208252715	208252715	+	Missense_Mutation	SNP	A	A	C	rs202222167		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PLXNA2-92	NM_025179	exon12	c.T2476G	p.C826G	CGCTGCACCAGCC	.	47	32	32	1	.	7	6	1	0	0
LAMB3	3914	hgsc.bcm.edu	37	1	209795956	209795956	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	LAMB3-156	NM_000228	exon18	c.G2626C	p.A876P	GGCTGGCGCTCAC	.	865	334	319	0	.	5	5	0	0	0
TRAF5	7188	bcgsc.ca	37	1	211545690	211545690	+	Nonsense_Mutation	SNP	C	C	A	rs200264560		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TRAF5-661	NM_004619	exon11	c.C1320A	p.Y440X	TGGCTACCGGCTC	.	33	10	119	0	.	9	9	0	0	0
TP53BP2	7159	bcgsc.ca	37	1	223990474	223990474	+	Missense_Mutation	SNP	A	A	C	rs199538625		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TP53BP2-229	NM_001031685	exon8	c.T955G	p.W319G	TCTTCCACAGCCG	.	85	28	192	0	.	25	23	2	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228559225	228559225	+	Missense_Mutation	SNP	G	G	A	rs200269110		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	OBSCN-403	NM_001271223	exon105	c.G23617A	p.E7873K	CTGCGCGAGCCAC	.	13	6	3	1	.	0	0	0	0	0
OR2T12	127064	hgsc.bcm.edu	37	1	248458346	248458346	+	Missense_Mutation	SNP	C	C	T	rs71535238		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	OR2T12-71	NM_001004692	exon1	c.G535A	p.A179T	CGGGGGCCTCGCA	.	249	18	102	1	C|1.000;|0.000	0	0	0	0	0
FAM208B	54906	bcgsc.ca	37	10	5788304	5788304	+	Missense_Mutation	SNP	C	C	A	rs72772328		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	.	NM_017782	exon15	c.C2920A	p.Q974K	GTTACTCAAGCCA	.	32	16	68	0	.	10	10	0	0	0
CACNB2	783	bcgsc.ca	37	10	18827274	18827274	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CACNB2-154	NM_201596	exon13	c.A1468C	p.T490P	AGCCCCACCCTAG	.	267	127	301	5	.	1	1	0	0	0
ANK3	288	hgsc.bcm.edu	37	10	61819138	61819138	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ANK3-107	NM_020987	exon41	c.C12646G	p.R4216G	CTCTTCGAGCTTG	.	39	2	139	0	.	65	65	0	0	0
DNA2	1763	bcgsc.ca	37	10	70196869	70196869	+	Silent	SNP	A	A	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	.	NM_001080449	exon10	c.T1545G	p.G515G	TCTGTCACCTGCC	.	122	69	134	5	.	8	7	1	0	0
ENTPD1	953	bcgsc.ca	37	10	97604357	97604357	+	Missense_Mutation	SNP	A	A	G	rs80329743		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ENTPD1-93	NM_001164178	exon5	c.A574G	p.I192V	GGCTGGATTACTA	.	77	23	169	0	.	28	25	3	0	0
ABCC2	1244	bcgsc.ca	37	10	101603581	101603581	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ABCC2-91	NM_000392	exon27	c.T3767G	p.V1256G	GGCTGGTGAGGAT	.	276	60	414	1	.	6	5	1	0	0
SEC31B	25956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	102255181	102255181	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SEC31B-91	NM_015490	exon19	c.G2433C	p.E811D	TGATGTCTCTTTA	.	33	17	40	0	.	3	2	1	0	0
PAX2	5076	bcgsc.ca	37	10	102510625	102510625	+	Silent	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PAX2-90	NM_000278	exon3	c.G387C	p.V129V	CACAGTGCCCAGC	.	207	101	101	0	.	77	67	10	0	0
XPNPEP1	7511	bcgsc.ca	37	10	111667523	111667523	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	XPNPEP1-94	NM_001167604	exon3	c.C172A	p.Q58K	TGGCTTGTCTCAG	.	222	110	239	0	.	41	39	2	0	0
DCLRE1A	9937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	115608965	115608965	+	Silent	SNP	A	A	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	DCLRE1A-228	NM_014881	exon2	c.T1899C	p.R633R	TTTTTGACGCTGT	.	225	84	145	0	.	5	2	3	0	0
TDRD1	56165	bcgsc.ca	37	10	115985894	115985894	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TDRD1-90	NM_198795	exon22	c.A3094C	p.T1032P	ATTGAAACCCTGC	.	56	23	63	0	.	1	1	0	0	0
ILK	3611	bcgsc.ca	37	11	6629291	6629291	+	Silent	SNP	C	C	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ILK-1363	NM_001014794	exon3	c.C105T	p.F35F	TGGCTTCTCCCCC	.	67	19	39	0	.	185	166	19	0	0
MRGPRX2	117194	bcgsc.ca	37	11	19077074	19077074	+	Missense_Mutation	SNP	C	C	G	rs201365816		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	MRGPRX2-91	NM_054030	exon2	c.G876C	p.Q292H	CGGCTGCTGCAGC	.	100	69	82	0	.	0	0	0	0	0
MRGPRX2	117194	bcgsc.ca	37	11	19077079	19077079	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	MRGPRX2-91	NM_054030	exon2	c.C871G	p.L291V	GCTGCAGCCGCCA	.	96	47	82	2	.	0	0	0	0	0
WT1	7490	bcgsc.ca	37	11	32449564	32449564	+	Missense_Mutation	SNP	G	G	C	rs200222400		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	WT1-6891	NM_024424	exon3	c.C810G	p.C270W	GGTGTGGCAGCCA	.	56	20	37	0	.	0	0	0	0	0
SLC43A3	29015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	57188512	57188512	+	Missense_Mutation	SNP	C	C	T	rs148055054		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SLC43A3-90	NM_017611	exon7	c.G464A	p.R155H	GTCGAACGGTGTT	.	91	35	63	0	C|1.000;T|0.000	10	8	2	0	0
SLC22A10	387775	bcgsc.ca	37	11	63071626	63071626	+	Missense_Mutation	SNP	T	T	G	rs76578107		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SLC22A10-92	NM_001039752	exon8	c.T1332G	p.C444W	CGGCTGTTCTGCT	.	63	26	215	1	.	0	0	0	0	0
SYVN1	84447	bcgsc.ca	37	11	64898255	64898255	+	Missense_Mutation	SNP	T	T	G	rs199952384		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SYVN1-91	NM_172230	exon11	c.A982C	p.T328P	GGCAGGTGGGGCA	.	149	101	52	3	.	6	4	2	0	0
LTBP3	4054	hgsc.bcm.edu	37	11	65306859	65306859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	LTBP3-91	NM_001130144	exon27	c.G3700A	p.G1234S	CGGCGCCGCCCGG	.	13	9	1	1	.	37	12	25	0	0
SF3B2	10992	hgsc.bcm.edu	37	11	65835460	65835460	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SF3B2-92	NM_006842	exon20	c.A2374C	p.T792P	AAGAGAACAGCCA	.	482	138	139	0	.	208	179	29	0	0
FOLR2	2350	hgsc.bcm.edu	37	11	71932098	71932098	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	FOLR2-290	NM_001113535	exon3	c.A335G	p.Q112R	GGATCCAGCAGGT	.	64	7	10	0	.	1	1	0	0	0
P2RY6	5031	bcgsc.ca	37	11	73007682	73007682	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	P2RY6-501	NM_176796	exon4	c.G119C	p.G40A	CGGCTGGCCTGCC	.	596	132	277	0	.	12	12	0	0	0
USP35	57558	bcgsc.ca	37	11	77907381	77907381	+	Silent	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	USP35-637	NM_020798	exon2	c.G90C	p.R30R	GGCGCGGCAGCCG	.	110	73	49	0	.	0	0	0	0	0
FAT3	120114	bcgsc.ca	37	11	92533292	92533292	+	Silent	SNP	C	C	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	FAT3-73	NM_001008781	exon9	c.C7113T	p.F2371F	TGGCTTCCCATCA	.	62	19	134	0	.	0	0	0	0	0
ARHGAP20	57569	hgsc.bcm.edu;broad.mit.edu	37	11	110454361	110454361	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ARHGAP20-230	NM_020809	exon14	c.G1516C	p.A506P	TAAATGCAGTCAT	.	10	3	26	0	.	1	1	0	0	0
ST3GAL4	6484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	126276866	126276866	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ST3GAL4-90	NM_001254757	exon4	c.G130C	p.E44Q	AAGAAGGAGCCGT	.	419	165	94	0	.	50	14	36	0	0
ACAD8	27034	bcgsc.ca	37	11	134127129	134127129	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ACAD8-90	NM_014384	exon3	c.A358C	p.T120P	AGCACCACAGCCT	.	97	39	55	0	.	26	26	0	0	0
WNK1	65125	bcgsc.ca	37	12	977305	977305	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	WNK1-916	NM_213655	exon10	c.A2668C	p.T890P	GGTACTACAGCCA	.	114	53	67	0	.	0	0	0	0	0
WNK1	65125	bcgsc.ca	37	12	988849	988849	+	Silent	SNP	A	A	C	rs201077153		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	WNK1-916	NM_018979	exon11	c.A2484C	p.G828G	AGTGGGACAGCCG	.	85	20	140	0	.	4	4	0	0	0
C1S	716	bcgsc.ca	37	12	7171607	7171607	+	Missense_Mutation	SNP	G	G	T	rs201505473		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	C1S-91	NM_201442	exon5	c.G428T	p.C143F	TCCCTTGTAGCCA	.	168	36	213	0	.	92	91	0	1	0
CD163	9332	bcgsc.ca	37	12	7654024	7654024	+	Silent	SNP	A	A	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CD163-98	NM_203416	exon3	c.T168G	p.G56G	GTTTTCACCATCC	.	57	28	156	0	.	37	34	3	0	0
PKP2	5318	bcgsc.ca	37	12	32974403	32974403	+	Missense_Mutation	SNP	A	A	C	rs200327989		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PKP2-92	NM_004572	exon10	c.T2032G	p.W678G	AATGCCACAGCCA	.	32	14	70	1	.	1	1	0	0	0
SLC11A2	4891	bcgsc.ca	37	12	51384724	51384724	+	Missense_Mutation	SNP	G	G	C	rs199589052		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SLC11A2-153	NM_001174125	exon15	c.C1516G	p.R506G	CAATCCGCCAGCC	.	29	12	78	0	G|0.998;C|0.002	0	0	0	0	0
CCDC59	29080	bcgsc.ca	37	12	82750844	82750844	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CCDC59-90	NM_014167	exon2	c.A359C	p.H120P	GGCTGGTGAACTT	.	107	53	140	3	.	27	27	0	0	0
UBE2N	7334	bcgsc.ca	37	12	93804525	93804525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	UBE2N-659	NM_003348	exon3	c.C403A	p.Q135K	TGGCTTGGGCTTC	.	110	30	206	0	.	116	110	6	0	0
MYBPC1	4604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	102038482	102038482	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	MYBPC1-94	NM_206819	exon12	c.A873T	p.K291N	TGACAAAGGAGGC	.	65	18	40	0	.	0	0	0	0	0
STAB2	55576	bcgsc.ca	37	12	104030938	104030938	+	Silent	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	STAB2-104	NM_017564	exon7	c.G633C	p.S211S	ATGTTCGCCTTCC	.	78	35	109	0	.	0	0	0	0	0
ACAD10	80724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	112174685	112174685	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ACAD10-92	NM_001136538	exon13	c.T1684A	p.Y562N	GAGGAGTATTTCA	.	132	50	44	0	.	26	13	13	0	0
SPPL3	121665	bcgsc.ca	37	12	121206290	121206290	+	Missense_Mutation	SNP	A	A	C	rs200945160		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	.	NM_139015	exon8	c.T611G	p.V204G	AAAAATACCTGCC	.	134	62	93	3	.	0	0	0	0	0
KNTC1	9735	broad.mit.edu;ucsc.edu	37	12	123105091	123105091	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	KNTC1-543	NM_014708	exon60	c.C6215T	p.P2072L	AACTTCCGGCTTT	.	51	4	36	0	.	7	7	0	0	0
RIMBP2	23504	bcgsc.ca	37	12	130892349	130892349	+	Silent	SNP	A	A	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	RIMBP2-142	NM_015347	exon16	c.T2847G	p.R949R	CGAATGACGCCTG	.	299	110	190	0	.	0	0	0	0	0
EP400	57634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	132551479	132551479	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	EP400-520	NM_015409	exon49	c.T8714A	p.I2905N	CGGGGATCAGCGT	.	89	35	47	0	.	15	9	6	0	0
IFT88	8100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	21189985	21189985	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	IFT88-91	NM_175605	exon16	c.T1193G	p.V398G	CTCCTGTAATTGA	.	181	63	62	0	.	15	15	0	0	0
IFT88	8100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	21189988	21189988	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	IFT88-91	NM_175605	exon16	c.T1196A	p.I399N	CTGTAATTGAAAC	.	180	60	61	0	.	19	19	0	0	0
ATP8A2	51761	ucsc.edu	37	13	26156055	26156055	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ATP8A2-138	NM_016529	exon23	c.G2106T	p.W702C	AATATGGGTGTTG	.	76	4	72	0	.	0	0	0	0	0
BRCA2	675	bcgsc.ca	37	13	32906983	32906983	+	Silent	SNP	G	G	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	BRCA2-3153	NM_000059	exon10	c.G1368A	p.E456E	ATCAGAGAAGCCA	.	49	22	88	0	.	1	1	0	0	0
BRCA2	675	bcgsc.ca	37	13	32913965	32913965	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	BRCA2-3153	NM_000059	exon11	c.G5473C	p.A1825P	AAAAATGCAGCCA	.	58	22	89	0	.	0	0	0	0	0
ELF1	1997	bcgsc.ca	37	13	41508016	41508016	+	Missense_Mutation	SNP	G	G	T	rs79846574		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ELF1-227	NM_172373	exon9	c.C1405A	p.Q469K	TGGCTTGTAAAAT	.	121	44	237	0	.	105	92	13	0	0
VWA8	23078	bcgsc.ca	37	13	42273324	42273324	+	Silent	SNP	G	G	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	.	NM_015058	exon29	c.C3447T	p.F1149F	CACAAAGAAGCCA	.	89	26	131	0	.	16	16	0	0	0
AKAP11	11215	hgsc.bcm.edu	37	13	42876808	42876808	+	Missense_Mutation	SNP	T	T	G	rs201995333		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	AKAP11-227	NM_016248	exon8	c.T3926G	p.V1309G	AGGCTGTAGTGCA	.	47	12	56	1	.	47	45	2	0	0
KIAA0226L	80183	bcgsc.ca	37	13	46942947	46942947	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	.	NM_025113	exon4	c.C539G	p.A180G	TGAACAGCACCTG	.	48	25	115	4	.	0	0	0	0	0
DIS3	22894	bcgsc.ca	37	13	73349455	73349455	+	Missense_Mutation	SNP	A	A	C	rs201006124		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	DIS3-90	NM_014953	exon6	c.T881G	p.V294G	AGCTCCACAGCCA	.	53	23	103	0	.	41	36	5	0	0
COCH	1690	bcgsc.ca	37	14	31355025	31355025	+	Silent	SNP	C	C	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	COCH-228	NM_004086	exon11	c.C984T	p.F328F	TGGCTTCTTCTCT	.	34	6	107	0	.	2	2	0	0	0
PPM1A	5494	bcgsc.ca	37	14	60749549	60749549	+	Missense_Mutation	SNP	T	T	G	rs74713917		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PPM1A-227	NM_177952	exon2	c.T347G	p.V116G	CGGCTGTGATCGG	.	327	121	492	0	.	52	49	3	0	0
SYT16	83851	hgsc.bcm.edu	37	14	62463094	62463094	+	Silent	SNP	A	A	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SYT16-23	NM_031914	exon1	c.A357C	p.T119T	TTCCACAATGTCC	.	35	2	152	0	.	6	6	0	0	0
AKAP5	9495	bcgsc.ca	37	14	64935947	64935947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	AKAP5-226	NM_004857	exon2	c.G835A	p.E279K	GTGGAAGAAGCCA	.	73	20	132	0	.	3	2	1	0	0
CLMN	79789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	95669398	95669398	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CLMN-90	NM_024734	exon9	c.A2288G	p.Y763C	GGCATATAGCCCT	.	206	84	20	0	.	28	16	12	0	0
AHNAK2	113146	ucsc.edu	37	14	105415291	105415291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	AHNAK2-47	NM_138420	exon7	c.C6497T	p.S2166F	GGGGCAGACACCC	.	2022	16	485	4	.	72	72	0	0	0
NIPA1	123606	bcgsc.ca	37	15	23060899	23060899	+	Missense_Mutation	SNP	A	A	C	rs200844669		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	NIPA1-90	NM_144599	exon3	c.T233G	p.V78G	TGGCCAACAGCCA	.	69	53	23	0	.	0	0	0	0	0
BMF	90427	bcgsc.ca	37	15	40396521	40396521	+	Missense_Mutation	SNP	G	G	A	rs77642791		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	BMF-228	NM_001003942	exon2	c.C313T	p.P105S	GGAGAGGAAGCCG	.	267	131	148	0	.	11	10	1	0	0
PLA2G4F	255189	bcgsc.ca	37	15	42439944	42439944	+	Missense_Mutation	SNP	A	A	C	rs79576717		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PLA2G4F-94	NM_213600	exon12	c.T1076G	p.V359G	CCCAACACAGCCA	.	194	124	72	1	.	0	0	0	0	0
TTBK2	146057	bcgsc.ca	37	15	43132600	43132600	+	Missense_Mutation	SNP	A	A	C	rs141523080		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TTBK2-338	NM_173500	exon4	c.T249G	p.C83W	CCTCCCACAGCCA	.	94	39	132	1	.	2	2	0	0	0
PYGO1	26108	bcgsc.ca	37	15	55838604	55838604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PYGO1-228	NM_015617	exon3	c.G877A	p.E293K	TGGCTTCAGTGCT	.	117	27	348	0	.	2	2	0	0	0
GCNT3	9245	bcgsc.ca	37	15	59911342	59911342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	GCNT3-91	NM_004751	exon3	c.C905T	p.S302F	TGGCTTCCCGAGA	.	137	27	205	0	.	19	19	0	0	0
FBXO22	26263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	76196905	76196905	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	FBXO22-658	NM_012170	exon2	c.G214A	p.G72S	TCCGCAGGCCTGG	.	305	92	129	0	.	42	22	20	0	0
SYNM	23336	ucsc.edu	37	15	99671486	99671486	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SYNM-26	.	.	.	.	CCAGAGAGGGGCA	.	57	1	17	0	.	4	3	1	0	0
BAIAP3	8938	hgsc.bcm.edu	37	16	1394683	1394683	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	BAIAP3-91	NM_003933	exon19	c.G1846C	p.A616P	GTGTACGCCAGCC	.	662	325	194	0	.	9	8	1	0	0
TSR3	115939	hgsc.bcm.edu	37	16	1401500	1401500	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	.	NM_001001410	exon2	c.G212A	p.R71Q	CAGCGCCGGGGGT	.	37	20	1	1	.	10	2	8	0	0
CREBBP	1387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	3808859	3808859	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CREBBP-1807	NM_004380	exon17	c.T3365C	p.I1122T	ACTGGAATTCCGA	.	62	14	64	0	.	0	0	0	0	0
SRCAP	10847	bcgsc.ca	37	16	30731626	30731626	+	Silent	SNP	C	C	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SRCAP-94	NM_006662	exon19	c.C2961A	p.P987P	CCGGCCCAAGCCA	.	548	146	220	0	.	8	8	0	0	0
SETD1A	9739	broad.mit.edu	37	16	30974861	30974861	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SETD1A-93	NM_014712	exon5	c.G625C	p.A209P	TCGGGTGCAGCCA	.	236	57	69	0	.	12	10	2	0	0
ITGAM	3684	hgsc.bcm.edu	37	16	31335785	31335785	+	Missense_Mutation	SNP	G	G	A	rs139908772		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ITGAM-226	NM_001145808	exon17	c.G2071A	p.V691I	CGCGCCGTCTTCA	.	27	17	5	0	G|0.999;A|0.001	23	10	13	0	0
ARMC5	79798	hgsc.bcm.edu	37	16	31474046	31474046	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ARMC5-24	NM_024742	exon3	c.C1178G	p.A393G	TGGCTGCCCTTGT	.	269	63	61	0	.	10	10	0	0	0
LONP2	83752	bcgsc.ca	37	16	48286156	48286156	+	Silent	SNP	G	G	A	rs202207335		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	LONP2-90	NM_031490	exon2	c.G348A	p.E116E	AAAAGAGAAGCCA	.	29	18	39	0	G|0.999;A|0.001	13	10	3	0	0
HERPUD1	9709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	56970652	56970652	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	HERPUD1-90	NM_014685	exon4	c.G354T	p.E118D	TCCTGAGGATTCC	.	77	41	85	0	.	515	265	250	0	0
SF3B3	23450	broad.mit.edu	37	16	70569300	70569300	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SF3B3-91	NM_012426	exon6	c.C802T	p.R268C	GATATCCGCTGTC	.	285	5	195	0	.	46	46	0	0	0
MARVELD3	91862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	71674415	71674415	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	MARVELD3-91	NM_001017967	exon3	c.T718A	p.Y240N	AACAACTACTACT	.	329	87	76	1	.	5	2	3	0	0
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	72984698	72984698	+	Silent	SNP	G	G	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ZFHX3-72	NM_006885	exon3	c.C2886T	p.G962G	GTGCAGGCCCAGC	.	260	65	38	0	.	11	9	2	0	0
USP6	9098	hgsc.bcm.edu	37	17	5042939	5042939	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	USP6-662	NM_004505	exon14	c.A1468C	p.T490P	CTGGCCACCTGCT	.	325	20	66	0	.	38	0	38	0	0
KDM6B	23135	bcgsc.ca	37	17	7750966	7750966	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	KDM6B-205	NM_001080424	exon11	c.G1360C	p.A454P	GCTCCCGCTGCCA	.	57	31	24	0	.	2	2	0	0	0
PER1	5187	hgsc.bcm.edu	37	17	8047043	8047043	+	Silent	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PER1-723	NM_002616	exon19	c.A2613C	p.P871P	GGCTGGTGGGGTG	.	52	29	11	1	.	14	13	1	0	0
COX10	1352	hgsc.bcm.edu;bcgsc.ca	37	17	14110451	14110451	+	Missense_Mutation	SNP	A	A	C	rs200435051		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	COX10-226	NM_001303	exon7	c.A1253C	p.H418P	TGTGGCACCTGCC	.	161	96	81	2	.	10	10	0	0	0
TVP23C	201158	bcgsc.ca	37	17	15449097	15449097	+	Splice_Site	SNP	A	A	C	rs199732389		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	.	NM_145301	exon6	c.462+2T>G	.	ATACTCACCAGCC	.	53	17	147	2	.	0	0	0	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA	.	858	112	303	45	.	47	15	31	0	1
ATPAF2	91647	bcgsc.ca	37	17	17942265	17942265	+	Silent	SNP	A	A	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ATPAF2-90	NM_145691	exon1	c.T63G	p.G21G	GGGGCCACCCGCC	.	87	54	35	4	.	4	3	1	0	0
WSB1	26118	bcgsc.ca	37	17	25639347	25639347	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	WSB1-226	NM_015626	exon9	c.G1218C	p.E406D	TCAGGAGCTGCCG	.	403	122	450	0	.	140	126	14	0	0
SLFN5	162394	bcgsc.ca	37	17	33586030	33586030	+	Silent	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SLFN5-92	NM_144975	exon2	c.T321G	p.G107G	GGCTGGTGTGCCA	.	106	45	144	1	.	20	20	0	0	0
ACACA	31	bcgsc.ca	37	17	35445967	35445967	+	Missense_Mutation	SNP	C	C	T	rs199660893		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ACACA-154	NM_198834	exon55	c.G6934A	p.E2312K	GTTTCTCTAGCCA	.	185	72	196	0	.	28	25	3	0	0
NR1D1	9572	bcgsc.ca	37	17	38253621	38253621	+	Missense_Mutation	SNP	A	A	G	rs201066687		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	NR1D1-226	NM_021724	exon2	c.T67C	p.S23P	TTGGGGAGGAGCC	.	91	56	20	0	.	6	6	0	0	0
KRTAP4-7	100132476	ucsc.edu	37	17	39240779	39240779	+	Silent	SNP	C	C	A	rs74195088		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	.	NM_033061	exon1	c.C321A	p.P107P	CCAGCCCACCTGC	.	125	15	39	0	C|0.956;A|0.044	0	0	0	0	0
KRTAP4-2	85291	hgsc.bcm.edu	37	17	39334233	39334233	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	KRTAP4-2-44	NM_033062	exon1	c.A184C	p.S62R	TGGGGCTGCAGCA	.	477	30	123	0	.	0	0	0	0	0
KRT9	3857	broad.mit.edu	37	17	39724451	39724451	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	KRT9-92	NM_000226	exon6	c.A1357C	p.T453P	GGTAGGTCTCGAT	.	209	59	60	0	.	0	0	0	0	0
GHDC	84514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40344945	40344945	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	GHDC-90	NM_001142623	exon4	c.C366A	p.D122E	CCCAAGGTCCTGG	.	674	230	144	0	.	72	42	30	0	0
GHDC	84514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40344972	40344972	+	Silent	SNP	C	C	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	GHDC-90	NM_001142623	exon4	c.G339A	p.Q113Q	CAGTGGCTGCTCT	.	869	325	191	1	.	76	40	36	0	0
ITGA3	3675	bcgsc.ca	37	17	48156873	48156873	+	Silent	SNP	A	A	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ITGA3-229	NM_005501	exon21	c.A2658C	p.P886P	CCCCCCACCTGTC	.	216	79	64	0	.	219	214	5	0	0
INTS2	57508	bcgsc.ca	37	17	59946430	59946430	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	INTS2-206	NM_020748	exon23	c.G3233C	p.R1078P	GCTAAACGAGCCA	.	34	13	98	6	.	12	12	0	0	0
COG1	9382	bcgsc.ca	37	17	71196858	71196858	+	Silent	SNP	G	G	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	COG1-91	NM_018714	exon6	c.G1224A	p.E408E	TCTGGAGAAGCCG	.	179	59	86	0	.	78	59	19	0	0
ITGB4	3691	hgsc.bcm.edu	37	17	73732406	73732406	+	Missense_Mutation	SNP	G	G	C	rs201929789		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ITGB4-227	NM_001005731	exon15	c.G1799C	p.R600P	GTGGCCGCTGCCA	.	385	151	123	0	G|0.998;C|0.002	19	19	0	0	0
SEPT9	10801	hgsc.bcm.edu	37	17	75488782	75488782	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SEPT9-659	NM_001113491	exon9	c.T1460G	p.V487G	GGCTGGTGAACGA	.	873	208	206	1	.	229	174	55	0	0
PIEZO2	63895	bcgsc.ca	37	18	10691291	10691291	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	.	NM_022068	exon44	c.C6942A	p.Y2314X	CGTTGGGTAGCCA	.	68	23	82	0	.	12	12	0	0	0
PLEKHJ1	55111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	2234038	2234038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PLEKHJ1-90	NM_018049	exon5	c.C343A	p.L115I	AGATGAGGCTTCT	.	567	185	176	0	.	40	22	18	0	0
TMIGD2	126259	bcgsc.ca	37	19	4294632	4294632	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TMIGD2-90	NM_144615	exon4	c.C494G	p.A165G	ACGATCGCAGCCA	.	661	151	394	0	.	0	0	0	0	0
KDM4B	23030	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	5131903	5131903	+	Silent	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	KDM4B-226	NM_015015	exon13	c.G1791C	p.P597P	GGCACCGTCCACA	.	89	20	31	0	.	0	0	0	0	0
MUC16	94025	bcgsc.ca	37	19	9021175	9021175	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	MUC16-566	NM_024690	exon19	c.C37148G	p.A12383G	GGGCCAGCAGCCA	.	74	23	132	0	.	0	0	0	0	0
ZNF559	84527	bcgsc.ca	37	19	9449897	9449897	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ZNF559-91	NM_001202408	exon4	c.T254G	p.V85G	TGGCTGTGGACTT	.	170	56	169	0	.	10	8	2	0	0
ZNF426	79088	bcgsc.ca	37	19	9644614	9644614	+	Missense_Mutation	SNP	A	A	C	rs77003677		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ZNF426-91	NM_024106	exon5	c.T146G	p.V49G	AAGTCCACAGCCA	.	80	28	120	0	.	6	6	0	0	0
CACNA1A	773	bcgsc.ca	37	19	13335580	13335580	+	Silent	SNP	G	G	A	rs200786078		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CACNA1A-67	NM_001127221	exon38	c.C5635T	p.L1879L	TCCGCAGAAGCCG	.	28	15	19	0	.	0	0	0	0	0
MRI1	84245	hgsc.bcm.edu	37	19	13875777	13875777	+	Silent	SNP	C	C	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	MRI1-91	NM_001031727	exon2	c.C225T	p.L75L	CGCGCTCGTGGCC	.	8	6	0	0	.	34	13	21	0	0
OR10H2	26538	broad.mit.edu	37	19	15839311	15839311	+	Missense_Mutation	SNP	C	C	T	rs139469467		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	OR10H2-70	NM_013939	exon1	c.C458T	p.S153L	GTGGCTCGGTCAT	.	199	6	56	1	C|1.000;T|0.000	0	0	0	0	0
USE1	55850	bcgsc.ca	37	19	17330035	17330035	+	Missense_Mutation	SNP	T	T	C	rs201210102	byfrequency;alternate_allele	TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	.	NM_018467	exon7	c.T436C	p.S146P	GCAGGGTCCCAGC	.	107	41	38	0	T|0.966;G|0.034	1	1	0	0	0
INSL3	3640	bcgsc.ca	37	19	17927847	17927847	+	Missense_Mutation	SNP	T	T	C	rs199499462		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	INSL3-90	NM_001265587	exon3	c.A307G	p.R103G	CGTCTCTCCAGCC	.	74	45	30	0	.	0	0	0	0	0
LRRC25	126364	broad.mit.edu	37	19	18507298	18507298	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	LRRC25-90	NM_145256	exon1	c.C476A	p.P159H	AGGCCAGGGGCGC	.	142	7	39	0	.	2	2	0	0	0
UBA2	10054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	34921484	34921484	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	UBA2-227	NM_005499	exon2	c.G142C	p.D48H	TAGATTGATCTGG	.	152	52	95	0	.	0	0	0	0	0
KIRREL2	84063	bcgsc.ca	37	19	36353426	36353426	+	Silent	SNP	A	A	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	KIRREL2-93	NM_199180	exon12	c.A1542G	p.G514G	GGCCGGAGTGGCC	.	344	129	210	1	.	0	0	0	0	0
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	39039030	39039030	+	Silent	SNP	T	T	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	RYR1-100	NM_000540	exon89	c.T12252C	p.R4084R	TCCCCGTGGCCTC	.	299	101	99	0	.	1	1	0	0	0
FCGBP	8857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	40366038	40366038	+	Silent	SNP	C	C	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	FCGBP-98	NM_003890	exon30	c.G14196C	p.P4732P	GAAGTCCGGCCGC	.	205	59	164	0	.	0	0	0	0	0
ZNF227	7770	bcgsc.ca	37	19	44732627	44732627	+	Missense_Mutation	SNP	T	T	G	rs77864769		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ZNF227-91	NM_182490	exon4	c.T89G	p.V30G	TGGCTGTGGTCTT	.	103	40	130	1	.	4	3	1	0	0
CLASRP	11129	ucsc.edu	37	19	45572384	45572384	+	Splice_Site	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CLASRP-154	NM_007056	exon17	c.1827+2T>G	.	GGCAGGTGAAGTG	.	302	88	104	11	.	0	0	0	0	0
NUCB1	4924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49422348	49422348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	NUCB1-90	NM_006184	exon9	c.G878A	p.R293Q	AGGAGCGACTGCG	.	126	43	39	0	.	342	147	195	0	0
VRK3	51231	bcgsc.ca	37	19	50493004	50493004	+	Missense_Mutation	SNP	C	C	G	rs200282632		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	VRK3-359	NM_016440	exon11	c.G988C	p.A330P	GGAAGGCGAAGCC	.	54	26	48	0	.	40	36	4	0	0
ZNF649	65251	bcgsc.ca	37	19	52400203	52400203	+	Missense_Mutation	SNP	A	A	C	rs149586071		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ZNF649-92	NM_023074	exon3	c.T44G	p.V15G	AAGTCCACAGCCA	.	130	48	216	0	.	16	12	4	0	0
ZNF614	80110	bcgsc.ca	37	19	52521719	52521719	+	Missense_Mutation	SNP	A	A	C	rs76388547		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ZNF614-95	NM_025040	exon3	c.T44G	p.V15G	AATTCCACAGCCA	.	80	29	111	0	.	8	7	1	0	0
ZNF665	79788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	53668284	53668284	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ZNF665-70	NM_024733	exon4	c.A1459T	p.K487X	CACACTTGTAAGG	.	217	68	88	0	.	1	1	0	0	0
LILRB2	10288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54783677	54783677	+	Silent	SNP	C	C	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	LILRB2-91	NM_005874	exon4	c.G324A	p.E108E	ACTGAGCTCAGAC	.	359	108	101	0	.	4	4	0	0	0
NLRP8	126205	bcgsc.ca	37	19	56490765	56490765	+	Missense_Mutation	SNP	A	A	G	rs77160817		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	NLRP8-361	NM_176811	exon9	c.A2882G	p.E961G	GGCTGGAAAACTG	.	70	25	129	0	.	0	0	0	0	0
ZNF71	58491	hgsc.bcm.edu	37	19	57133670	57133670	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ZNF71-91	NM_021216	exon3	c.T1015G	p.S339A	CAGAGCTCCTACC	.	180	9	127	0	.	4	4	0	0	0
HS1BP3	64342	bcgsc.ca	37	2	20818846	20818846	+	Silent	SNP	C	C	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	HS1BP3-91	NM_022460	exon7	c.G1080A	p.Q360Q	CGGCTTCTGCTGC	.	276	130	201	0	.	37	35	2	0	0
HS1BP3	64342	bcgsc.ca	37	2	20818851	20818851	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	HS1BP3-91	NM_022460	exon7	c.C1075G	p.Q359E	TCTGCTGCCCAGC	.	304	159	206	0	.	45	43	2	0	0
TMEM214	54867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27259433	27259433	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TMEM214-115	NM_017727	exon6	c.T799G	p.F267V	GCAGGTTTTGCCA	.	611	177	124	0	.	142	102	40	0	0
CGREF1	10669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27327221	27327221	+	Missense_Mutation	SNP	G	G	T	rs112618911	byfrequency;alternate_allele	TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CGREF1-91	NM_001166239	exon2	c.C14A	p.T5K	GTCATCGTCAAAG	.	149	38	37	0	G|0.998;A|0.002	5	5	0	0	0
ZNF512	84450	bcgsc.ca	37	2	27840357	27840357	+	Silent	SNP	A	A	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ZNF512-91	NM_032434	exon13	c.A1314G	p.G438G	GGCTGGAAAATAC	.	73	45	76	0	.	20	16	4	0	0
SPAST	6683	hgsc.bcm.edu	37	2	32289269	32289269	+	Silent	SNP	C	C	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SPAST-153	NM_199436	exon1	c.C369G	p.A123A	ACAGGCCTTCGAG	.	9	6	3	1	.	2	0	2	0	0
FAM98A	25940	bcgsc.ca	37	2	33813450	33813450	+	Silent	SNP	A	A	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	FAM98A-91	NM_015475	exon4	c.T474C	p.P158P	GGCTGGAGGTTTG	.	55	25	169	0	.	48	42	6	0	0
CEBPZ	10153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	37454852	37454852	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CEBPZ-91	NM_005760	exon2	c.C1484T	p.P495L	GAATAAGGGTATG	.	34	20	69	0	.	66	25	41	0	0
ATL2	64225	bcgsc.ca	37	2	38525498	38525498	+	Missense_Mutation	SNP	T	T	G	rs76204302		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ATL2-228	NM_001135673	exon12	c.A1420C	p.T474P	CTGGGGTACGAGC	.	36	16	95	1	.	46	33	13	0	0
ZNF514	84874	bcgsc.ca	37	2	95818976	95818976	+	Missense_Mutation	SNP	A	A	C	rs79400981		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ZNF514-90	NM_032788	exon3	c.T23G	p.V8G	AATTCCACAGCCA	.	47	21	91	0	.	42	36	6	0	0
GPR45	11250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	105858582	105858582	+	Silent	SNP	C	C	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	GPR45-154	NM_007227	exon1	c.C267G	p.P89P	CATGCCCTTCACC	.	527	245	151	0	.	0	0	0	0	0
CBWD2	150472	hgsc.bcm.edu	37	2	114195459	114195459	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CBWD2-90	NM_172003	exon1	c.T14G	p.V5G	CGGCTGTTGGATC	.	571	268	175	0	.	26	24	2	0	0
GLI2	2736	hgsc.bcm.edu	37	2	121746538	121746538	+	Silent	SNP	C	C	T	rs140479803		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	GLI2-954	NM_005270	exon13	c.C3048T	p.D1016D	CACCGACGGCGGC	.	18	14	2	0	C|0.978;T|0.022	0	0	0	0	0
TFCP2L1	29842	hgsc.bcm.edu;broad.mit.edu	37	2	122042681	122042681	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TFCP2L1-93	NM_014553	exon1	c.T5A	p.L2H	CAGAAGAGCATGG	.	31	19	14	0	.	10	3	7	0	0
ZRANB3	84083	bcgsc.ca	37	2	136107601	136107601	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ZRANB3-658	NM_032143	exon5	c.C544G	p.R182G	TGGCTCGTCTGGC	.	45	25	67	0	.	3	2	1	0	0
PLA2R1	22925	bcgsc.ca	37	2	160898583	160898583	+	Missense_Mutation	SNP	G	G	T	rs200625381		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PLA2R1-93	NM_001195641	exon3	c.C620A	p.T207K	CGGCTTGTCGTGG	.	97	40	141	0	G|0.999;T|0.001	7	7	0	0	0
DPP4	1803	bcgsc.ca	37	2	162879272	162879272	+	Missense_Mutation	SNP	A	A	C	rs200047090		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	DPP4-93	NM_001935	exon12	c.T1061G	p.V354G	CTTCCAACCCAGC	.	47	19	169	0	.	0	0	0	0	0
ALS2	57679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	202626257	202626257	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ALS2-275	NM_001135745	exon4	c.C460T	p.Q154X	CCAACTGTAAAAT	.	121	55	50	0	.	20	8	12	0	0
KANSL1L	151050	bcgsc.ca	37	2	210993868	210993868	+	Missense_Mutation	SNP	C	C	A	rs78236584		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	.	NM_152519	exon3	c.G1117T	p.V373L	TGTCTACAAGCCA	.	19	14	127	0	.	41	38	3	0	0
MYL1	4632	bcgsc.ca	37	2	211179729	211179729	+	Missense_Mutation	SNP	G	G	C	rs142821726		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	MYL1-91	NM_079420	exon1	c.C38G	p.A13G	GCAGCCGCAGCCA	.	702	155	342	0	G|1.000;C|0.000	0	0	0	0	0
OBSL1	23363	hgsc.bcm.edu	37	2	220435880	220435880	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	OBSL1-71	NM_001173431	exon1	c.T75G	p.S25R	GGCGCCACTTACC	.	17	7	8	1	.	7	3	4	0	0
SLC19A3	80704	bcgsc.ca	37	2	228560681	228560681	+	Missense_Mutation	SNP	T	T	G	rs201784334		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SLC19A3-92	NM_025243	exon4	c.A1096C	p.T366P	TGGCTGTGTAATG	.	47	15	102	0	.	1	1	0	0	0
ESF1	51575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	13695769	13695769	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ESF1-91	NM_001276380	exon14	c.T2308A	p.L770M	TGAACAAGTGGGA	.	89	38	74	1	.	17	10	7	0	0
RALGAPA2	57186	bcgsc.ca	37	20	20501647	20501647	+	Missense_Mutation	SNP	A	A	G	rs77346211		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	RALGAPA2-24	NM_020343	exon31	c.T3998C	p.F1333S	GGCAGGAAGGGGT	.	57	33	77	4	A|0.996;G|0.004	9	9	0	0	0
ZSWIM1	90204	hgsc.bcm.edu	37	20	44512073	44512073	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ZSWIM1-91	NM_080603	exon2	c.C842T	p.S281F	TGGCTTCTCTGTT	.	754	280	165	1	.	12	7	5	0	0
GRIK1	2897	hgsc.bcm.edu	37	21	30927529	30927529	+	Missense_Mutation	SNP	A	A	C	rs201323952	alternate_allele	TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	GRIK1-137	NM_000830	exon16	c.T2451G	p.N817K	GCAGCCATTCCCA	.	40	3	147	0	A|0.999;G|0.001	0	0	0	0	0
KRTAP22-1	337979	bcgsc.ca	37	21	31973511	31973511	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	KRTAP22-1-68	NM_181620	exon1	c.T72G	p.C24W	TGGCTGTGGTCTT	.	110	40	175	0	.	0	0	0	0	0
SLC5A3	6526	bcgsc.ca	37	21	35468406	35468406	+	Silent	SNP	C	C	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SLC5A3-92	NM_006933	exon2	c.C909G	p.G303G	GGCTGGCTTCTTA	.	100	53	127	0	.	1	1	0	0	0
DNMT3L	29947	bcgsc.ca	37	21	45668924	45668924	+	Missense_Mutation	SNP	A	A	G	rs200728649		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	DNMT3L-228	NM_013369	exon11	c.T980C	p.I327T	GCTGGGATGTTGC	.	42	29	29	0	.	0	0	0	0	0
BID	637	bcgsc.ca	37	22	18226601	18226601	+	Missense_Mutation	SNP	C	C	G	rs201438109		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	BID-1083	NM_197966	exon3	c.G329C	p.S110T	TGGCTGCTGCGGT	.	82	61	49	1	.	26	26	0	0	0
CABIN1	23523	ucsc.edu	37	22	24494089	24494089	+	Missense_Mutation	SNP	A	A	C	rs77920906		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CABIN1-94	NM_001199281	exon26	c.A4051C	p.T1351P	CCTTACACAGCCA	.	278	87	97	1	.	7	7	0	0	0
NF2	4771	hgsc.bcm.edu	37	22	30000103	30000103	+	Splice_Site	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	NF2-4696	NM_016418	exon1	c.114+2T>G	.	GCGAGGTAACCGG	.	17	15	7	0	.	5	0	5	0	0
TOMM22	56993	bcgsc.ca	37	22	39077991	39077991	+	Missense_Mutation	SNP	C	C	G	rs202201801		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TOMM22-90	NM_020243	exon1	c.C8G	p.A3G	TGGCTGCCGCCGT	.	37	22	24	0	C|0.998;G|0.002	5	5	0	0	0
ADSL	158	bcgsc.ca	37	22	40750276	40750276	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ADSL-652	NM_001123378	exon4	c.G427T	p.A143S	CGGCTTGCCGACT	.	408	111	228	0	.	81	79	2	0	0
EP300	2033	broad.mit.edu	37	22	41543893	41543893	+	Silent	SNP	G	G	A	rs187938527	alternate_allele	TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	EP300-2011	NM_001429	exon12	c.G2184A	p.R728R	ACCCCGGCAAACC	.	191	7	82	1	G|0.999;T|0.000	26	26	0	0	0
ALG12	79087	bcgsc.ca	37	22	50307356	50307356	+	Missense_Mutation	SNP	C	C	A	rs140468943	alternate_allele	TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ALG12-90	NM_024105	exon2	c.G58T	p.V20L	TGGCTACGGCCAC	.	209	66	113	0	C|1.000;T|0.000	12	12	0	0	0
TUBGCP6	85378	bcgsc.ca	37	22	50659571	50659571	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TUBGCP6-93	NM_020461	exon16	c.A3217C	p.T1073P	GCTGGGTGGGAGC	.	427	129	183	0	.	21	19	2	0	0
CIDEC	63924	hgsc.bcm.edu	37	3	9911862	9911862	+	Missense_Mutation	SNP	G	G	C	rs201802471		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CIDEC-90	NM_001199623	exon4	c.C391G	p.P131A	ATGGGGGCTGCCA	.	367	90	114	0	G|0.999;C|0.001	0	0	0	0	0
CTNNB1	1499	bcgsc.ca	37	3	41278119	41278119	+	Missense_Mutation	SNP	C	C	A	rs77750814		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CTNNB1-24361	NM_001098209	exon13	c.C1995A	p.D665E	TGAGGACAAGCCA	.	55	26	158	1	.	159	108	51	0	0
OR5H15	403274	hgsc.bcm.edu	37	3	97888448	97888448	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	OR5H15-92	NM_001005515	exon1	c.T905C	p.I302T	CATTCATAAAAAT	.	11	2	39	2	.	0	0	0	0	0
TMPRSS7	344805	bcgsc.ca	37	3	111780727	111780727	+	Missense_Mutation	SNP	C	C	A	rs200385589		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TMPRSS7-70	NM_001042575	exon9	c.C1026A	p.D342E	TTCAGACAAGCCA	.	28	10	100	1	.	0	0	0	0	0
DTX3L	151636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	122283388	122283388	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	DTX3L-587	NM_138287	exon1	c.G115T	p.G39W	GGCGGCGGGGAGT	.	365	62	115	0	.	19	13	6	0	0
SLC12A8	84561	broad.mit.edu	37	3	124896700	124896700	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SLC12A8-22	NM_024628	exon5	c.G509A	p.G170D	TTAATGCCCAGCA	.	190	5	33	0	.	8	8	0	0	0
SEC61A1	29927	bcgsc.ca	37	3	127774579	127774579	+	Silent	SNP	C	C	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SEC61A1-91	NM_013336	exon4	c.C205T	p.L69L	GTGATTCTAGCCT	.	116	41	150	1	.	206	191	15	0	0
CDV3	55573	bcgsc.ca	37	3	133306868	133306868	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CDV3-90	NM_017548	exon5	c.G755C	p.S252T	AGAAAAGCAGCCA	.	43	19	84	0	.	102	99	3	0	0
PCOLCE2	26577	hgsc.bcm.edu	37	3	142607735	142607735	+	Silent	SNP	T	T	G	rs202134327		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PCOLCE2-93	NM_013363	exon1	c.A4C	p.R2R	CGCCCCTCATGGC	.	40	18	2	1	T|0.993;G|0.007	1	1	0	0	0
GPR149	344758	bcgsc.ca	37	3	154055935	154055935	+	Silent	SNP	A	A	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	GPR149-96	NM_001038705	exon4	c.T1749C	p.T583T	GGCTGGAGTTATT	.	90	26	206	0	.	0	0	0	0	0
PSMD2	5708	hgsc.bcm.edu	37	3	184019770	184019770	+	Silent	SNP	C	C	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PSMD2-90	NM_002808	exon5	c.C615T	p.C205C	GGCTTGCGACCTG	.	184	11	114	2	.	150	149	0	0	1
FAM43A	131583	hgsc.bcm.edu	37	3	194408136	194408136	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	FAM43A-90	NM_153690	exon1	c.A581G	p.N194S	CGGCCAACGCGCT	.	24	5	0	0	.	13	5	8	0	0
FAM193A	8603	bcgsc.ca	37	4	2674038	2674038	+	Missense_Mutation	SNP	A	A	C	rs201152034		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	FAM193A-93	NM_001256667	exon12	c.A1463C	p.H488P	TTCCACACCTGCC	.	69	37	63	4	.	8	7	1	0	0
OTOP1	133060	hgsc.bcm.edu	37	4	4228479	4228479	+	Missense_Mutation	SNP	G	G	C	rs199890951		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	OTOP1-92	NM_177998	exon1	c.C113G	p.S38C	TCCGGGGACCTCG	.	11	3	2	0	.	0	0	0	0	0
ACOX3	8310	bcgsc.ca	37	4	8383307	8383307	+	Missense_Mutation	SNP	A	A	C	rs200650508		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ACOX3-90	NM_001101667	exon14	c.T1565G	p.V522G	TAGCAAACCAGCC	.	235	187	66	0	A|0.999;C|0.001	15	14	1	0	0
LGI2	55203	bcgsc.ca	37	4	25005443	25005443	+	Missense_Mutation	SNP	A	A	C	rs77736957		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	LGI2-90	NM_018176	exon8	c.T1268G	p.V423G	CTCTTCACAGCCA	.	298	73	405	0	.	0	0	0	0	0
SLAIN2	57606	broad.mit.edu	37	4	48422364	48422364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	.	NM_020846	exon7	c.G1583A	p.G528E	CTGCAGGGACAAC	.	160	4	140	0	.	41	41	0	0	0
LPHN3	23284	bcgsc.ca	37	4	62542580	62542580	+	Silent	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	LPHN3-508	NM_015236	exon3	c.T306G	p.G102G	GGCAGGTCCTGAT	.	36	19	238	1	.	1	1	0	0	0
CFI	3426	bcgsc.ca	37	4	110670458	110670458	+	Missense_Mutation	SNP	A	A	C	rs199838992		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CFI-90	NM_000204	exon10	c.T1064G	p.V355G	ATTGCCACCTGCC	.	221	103	280	5	A|0.999;C|0.001	343	266	77	0	0
NEUROG2	63973	hgsc.bcm.edu	37	4	113436466	113436466	+	Missense_Mutation	SNP	C	C	G	rs200923931		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	NEUROG2-92	NM_024019	exon2	c.G166C	p.G56R	CAGCCCCGCGCTG	.	26	17	3	1	C|0.996;G|0.004	0	0	0	0	0
ANK2	287	bcgsc.ca	37	4	114275831	114275831	+	Missense_Mutation	SNP	G	G	C	rs201005444		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ANK2-583	NM_001148	exon38	c.G6057C	p.K2019N	ACAAAAGCAGCCA	.	68	32	91	0	.	1	1	0	0	0
MAML3	55534	bcgsc.ca	37	4	140646955	140646955	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	MAML3-455	NM_018717	exon5	c.T2354C	p.L785P	GGCTGGAGGTGCT	.	29	13	51	0	.	0	0	0	0	0
TBC1D9	23158	broad.mit.edu	37	4	141580761	141580761	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TBC1D9-23	NM_015130	exon11	c.C1902G	p.Y634X	GTTGTAGTAATCT	.	5	2	17	0	.	19	19	0	0	0
PDCD6	10016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	311485	311485	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PDCD6-290	NM_013232	exon5	c.G445A	p.D149N	GCCTTCGACGACT	.	163	44	37	0	.	162	162	0	0	0
NSUN2	54888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	6616902	6616902	+	Missense_Mutation	SNP	G	G	T	rs138724893	alternate_allele	TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	NSUN2-91	NM_017755	exon9	c.C959A	p.T320K	GAACACGTGGAAT	.	86	38	68	0	G|1.000;A|0.000	29	12	17	0	0
C5orf51	285636	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	41911262	41911262	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	C5orf51-68	NM_175921	exon4	c.A467T	p.K156I	TAAGAAAATCCAG	.	11	7	29	0	.	8	4	4	0	0
SV2C	22987	bcgsc.ca	37	5	75490896	75490896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SV2C-91	NM_014979	exon3	c.C733T	p.L245F	TTCTTTCTCTTCT	.	86	10	267	0	.	0	0	0	0	0
BHMT	635	bcgsc.ca	37	5	78426877	78426877	+	Missense_Mutation	SNP	G	G	A	rs201007228		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	BHMT-91	NM_001713	exon8	c.G1159A	p.E387K	CAGAAAGAAGCCA	.	98	38	167	0	.	114	106	8	0	0
SNCAIP	9627	bcgsc.ca	37	5	121776345	121776345	+	Missense_Mutation	SNP	C	C	T	rs200684003		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SNCAIP-92	NM_005460	exon7	c.C1318T	p.L440F	TGGCTTCTTCAGT	.	49	18	96	0	.	1	1	0	0	0
MEGF10	84466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	126753406	126753406	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	MEGF10-94	NM_032446	exon11	c.G1207A	p.G403R	TCTCCTGGATTCT	.	106	49	45	0	.	0	0	0	0	0
BRD8	10902	bcgsc.ca	37	5	137500547	137500547	+	Silent	SNP	A	A	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	BRD8-91	NM_006696	exon13	c.T1806C	p.V602V	GGCTGGAACAACT	.	74	34	104	0	.	53	49	4	0	0
PCDHGC3	5098	hgsc.bcm.edu	37	5	140856534	140856534	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PCDHGC3-24	NM_032402	exon1	c.G851C	p.G284A	CCTTCGGCAGCCA	.	386	102	116	0	.	27	27	0	0	0
ARAP3	64411	bcgsc.ca	37	5	141041304	141041304	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ARAP3-291	NM_022481	exon21	c.C3066G	p.C1022W	CGGCAGGCAGCCA	.	462	129	203	0	.	0	0	0	0	0
FGF1	2246	bcgsc.ca	37	5	141974880	141974880	+	Missense_Mutation	SNP	A	A	G	rs201277854		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	FGF1-947	NM_001257209	exon4	c.T443C	p.L148P	AGGGGGAGAAACA	.	42	20	57	0	A|0.999;G|0.001	1	1	0	0	0
TCERG1	10915	hgsc.bcm.edu	37	5	145838701	145838701	+	Silent	SNP	T	T	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TCERG1-92	NM_006706	exon4	c.T693C	p.A231A	TCAGGCTCAGGCA	.	129	8	39	0	.	6	6	0	0	0
HAVCR1	26762	bcgsc.ca	37	5	156482504	156482504	+	Silent	SNP	A	A	C	rs141472249		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	HAVCR1-92	NM_001099414	exon3	c.T87G	p.G29G	AGATGGACCTGCC	.	54	35	38	3	A|0.998;C|0.002	80	43	37	0	0
PANK3	79646	bcgsc.ca	37	5	167991022	167991022	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PANK3-91	NM_024594	exon4	c.T684G	p.C228W	ACTTTCACAGCCA	.	91	33	247	0	.	17	15	2	0	0
MIR585	693170	bcgsc.ca	37	5	168690617	168690617	+	RNA	SNP	C	C	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	.	.	.	.	.	CAGCAGCCCTAGC	.	21	17	23	0	.	0	0	0	0	0
FBXW11	23291	bcgsc.ca	37	5	171384675	171384675	+	Missense_Mutation	SNP	C	C	T	rs201948522		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	FBXW11-272	NM_012300	exon2	c.G73A	p.G25S	CGCAGCCTAGCCA	.	99	58	144	1	.	0	0	0	0	0
TFAP2A	7020	hgsc.bcm.edu	37	6	10398708	10398708	+	Missense_Mutation	SNP	T	T	G	rs201591227		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TFAP2A-91	NM_003220	exon7	c.A1256C	p.N419T	TGGCTGTTGGGGT	.	1832	626	715	1	.	0	0	0	0	0
ELOVL2	54898	bcgsc.ca	37	6	11005704	11005704	+	Silent	SNP	A	A	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ELOVL2-90	NM_017770	exon3	c.T156G	p.G52G	CTTGTTACCCAGC	.	38	21	55	0	.	0	0	0	0	0
CAP2	10486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	17507928	17507928	+	Silent	SNP	T	T	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CAP2-91	NM_006366	exon6	c.T501C	p.T167T	TTACACTAACAGG	.	132	50	143	0	.	13	4	9	0	0
HIST1H1C	3006	hgsc.bcm.edu	37	6	26056427	26056427	+	Missense_Mutation	SNP	T	T	G	rs182693914		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	HIST1H1C-231	NM_005319	exon1	c.A230C	p.N77T	CGGCTGTTGTTTT	.	476	201	162	2	.	46	40	6	0	0
BTN3A2	11118	bcgsc.ca	37	6	26370630	26370630	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	BTN3A2-90	NM_001197246	exon3	c.T514G	p.Y172D	GGCTGGTACCCCC	.	96	51	106	0	.	75	68	7	0	0
TRIM39	56658	bcgsc.ca	37	6	30297131	30297131	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TRIM39-161	NM_172016	exon3	c.G37C	p.A13P	GCCTCTGCAGCCT	.	148	70	271	1	.	7	6	1	0	0
HLA-DQB2	3120	ucsc.edu	37	6	32726670	32726670	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	.	NM_001198858	exon3	c.A603C	p.Q201H	CTCCACTTGGCAG	.	59	6	64	5	.	2	1	1	0	0
ANKS1A	23294	ucsc.edu	37	6	34985432	34985432	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ANKS1A-94	NM_015245	exon11	c.G1606C	p.A536P	CAGGGCGCCTGCC	.	123	21	36	0	.	2	2	0	0	0
DST	667	bcgsc.ca	37	6	56417908	56417908	+	Missense_Mutation	SNP	T	T	G	rs78180015		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	DST-523	NM_015548	exon42	c.A7813C	p.T2605P	TGGCTGTGTTGTT	.	151	60	159	0	.	10	9	1	0	0
SMPD2	6610	broad.mit.edu	37	6	109764877	109764877	+	Silent	SNP	A	A	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SMPD2-90	NM_003080	exon10	c.A1041G	p.G347G	GGCTGGAGGAGGG	.	111	30	52	0	.	6	6	0	0	0
VGLL2	245806	bcgsc.ca	37	6	117589438	117589438	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	VGLL2-90	NM_182645	exon2	c.A175C	p.T59P	AGCCAAACCCCAG	.	602	210	320	2	.	0	0	0	0	0
FAM184A	79632	bcgsc.ca	37	6	119282964	119282964	+	Silent	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	FAM184A-519	NM_024581	exon17	c.A3303C	p.P1101P	TGGCTGTGGAAGT	.	51	23	278	1	.	6	6	0	0	0
PBOV1	59351	bcgsc.ca	37	6	138539226	138539226	+	Missense_Mutation	SNP	C	C	T	rs200344940		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	.	NM_021635	exon1	c.G307A	p.E103K	TGGCTTCTGAAGA	.	62	24	127	0	.	0	0	0	0	0
PHACTR2	9749	bcgsc.ca	37	6	144086447	144086447	+	Silent	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PHACTR2-92	NM_001100164	exon6	c.G744C	p.S248S	AGCTTCGCCATCC	.	76	30	142	0	.	11	11	0	0	0
UTRN	7402	bcgsc.ca	37	6	144808805	144808805	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	UTRN-95	NM_007124	exon28	c.A3944C	p.N1315T	CTTTCAACAGCCG	.	98	52	147	0	.	4	4	0	0	0
SYNE1	23345	bcgsc.ca	37	6	152470619	152470619	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SYNE1-607	NM_182961	exon136	c.G24635C	p.R8212P	GGCAGGCGGATCA	.	89	39	101	1	.	0	0	0	0	0
NOX3	50508	bcgsc.ca	37	6	155776042	155776042	+	Missense_Mutation	SNP	C	C	A	rs200865731		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	NOX3-91	NM_015718	exon3	c.G158T	p.W53L	CGTGCCCAAGCCA	.	12	9	38	0	C|0.999;A|0.001	0	0	0	0	0
ARID1B	57492	bcgsc.ca	37	6	157454175	157454175	+	Silent	SNP	C	C	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ARID1B-154	NM_020732	exon8	c.C2385G	p.G795G	GGCAGGCACACAA	.	55	33	67	1	.	14	14	0	0	0
PLG	5340	broad.mit.edu	37	6	161152867	161152867	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PLG-94	NM_000301	exon12	c.C1529A	p.P510H	AGGAGCCCCATAG	.	110	4	102	0	.	0	0	0	0	0
SFT2D1	113402	bcgsc.ca	37	6	166738061	166738061	+	Missense_Mutation	SNP	A	A	C	rs78154309		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SFT2D1-514	NM_145169	exon6	c.T374G	p.V125G	AATAACACAGCCA	.	51	22	69	0	.	72	53	19	0	0
INTS1	26173	bcgsc.ca	37	7	1524994	1524994	+	Missense_Mutation	SNP	G	G	C	rs201952847		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	.	NM_001080453	exon23	c.C3088G	p.L1030V	CCCGCAGCAGCCA	.	104	57	62	0	.	10	10	0	0	0
TNRC18	84629	bcgsc.ca	37	7	5427392	5427392	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TNRC18-46	NM_001080495	exon5	c.T2063G	p.V688G	CGGGCCACAGCCA	.	252	164	82	0	.	17	15	2	0	0
HOXA4	3201	hgsc.bcm.edu	37	7	27170159	27170159	+	Missense_Mutation	SNP	C	C	T	rs6962314		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	HOXA4-153	NM_002141	exon1	c.G194A	p.G65D	CGGCCGCCGCCCG	.	7	7	0	0	C|0.832;T|0.168	0	0	0	0	0
GCK	2645	ucsc.edu	37	7	44186168	44186168	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	GCK-416	NM_033507	exon8	c.G916T	p.V306L	GCAGCACAAGCCG	.	346	107	81	0	.	0	0	0	0	0
ELN	2006	bcgsc.ca	37	7	73466289	73466289	+	Missense_Mutation	SNP	G	G	C	rs200525318		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ELN-95	NM_001081753	exon17	c.G940C	p.A314P	GCAGCAGCAGCCG	.	209	112	73	0	.	0	0	0	0	0
TRIM74	378108	hgsc.bcm.edu	37	7	75028469	75028469	+	Silent	SNP	A	A	G	rs236633	by2hit2allele	TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TRIM74-40	NM_198853	exon2	c.A252G	p.P84P	GGACCCAGAGCCC	.	14	11	1	0	.	8	0	8	0	0
DTX2	113878	hgsc.bcm.edu	37	7	76131725	76131725	+	Silent	SNP	T	T	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	DTX2-524	NM_001102594	exon8	c.T1341C	p.H447H	CAGCCATGCCTTC	.	186	23	26	0	.	53	35	18	0	0
ABCB4	5244	bcgsc.ca	37	7	87072688	87072688	+	Missense_Mutation	SNP	T	T	C	rs201292029		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ABCB4-96	NM_018850	exon12	c.A1303G	p.K435E	TGCTCTTCCCACA	.	85	47	183	1	.	3	3	0	0	0
MUC17	140453	bcgsc.ca	37	7	100675714	100675714	+	Silent	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	MUC17-95	NM_001040105	exon3	c.G1017C	p.T339T	AAGTACGCCTGCC	.	250	93	334	0	.	0	0	0	0	0
CAV2	858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	116140377	116140377	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CAV2-90	NM_001233	exon2	c.T214A	p.C72S	TGGATCTGCAGCC	.	348	92	69	0	.	156	100	55	0	1
MET	4233	bcgsc.ca	37	7	116380999	116380999	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	MET-5874	NM_000245	exon5	c.T1621G	p.C541G	GGCTGGTGCCACG	.	81	35	115	0	.	161	139	22	0	0
NUP205	23165	bcgsc.ca	37	7	135290919	135290919	+	Silent	SNP	A	A	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	NUP205-207	NM_015135	exon20	c.A2850G	p.G950G	GGCTGGATTTGTG	.	182	63	224	0	.	19	16	3	0	0
SLC13A4	26266	bcgsc.ca	37	7	135384143	135384143	+	Missense_Mutation	SNP	T	T	G	rs201310555		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SLC13A4-90	NM_012450	exon8	c.A865C	p.T289P	GGCTGGTGGAGGT	.	75	45	39	1	T|0.999;G|0.001	0	0	0	0	0
OR9A2	135924	hgsc.bcm.edu	37	7	142724166	142724166	+	Silent	SNP	C	C	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	OR9A2-69	NM_001001658	exon1	c.G54C	p.G18G	TTGGGACCCAGGG	.	39	2	97	0	.	0	0	0	0	0
SSPO	23145	hgsc.bcm.edu	37	7	149485465	149485465	+	Missense_Mutation	SNP	A	A	C	rs200617080		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	.	NM_198455	exon27	c.A3871C	p.T1291P	CCCCCCACCTGCC	.	175	96	36	1	A|0.996;C|0.004	0	0	0	0	0
LRRC61	65999	hgsc.bcm.edu	37	7	150033986	150033986	+	Silent	SNP	C	C	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	LRRC61-90	NM_023942	exon2	c.C36G	p.G12G	GGCTGGCGGACTG	.	413	108	109	2	.	44	43	0	0	1
TMEM176A	55365	ucsc.edu	37	7	150500797	150500797	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TMEM176A-92	NM_018487	exon5	c.C432A	p.Y144X	TGGCTACTCTTAT	.	204	54	76	1	.	895	861	31	1	2
GALNTL5	168391	bcgsc.ca	37	7	151699853	151699853	+	Missense_Mutation	SNP	A	A	G	rs200114484		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	GALNTL5-92	NM_145292	exon6	c.A713G	p.E238G	GGCTGGAGCCCCT	.	60	31	63	0	.	0	0	0	0	0
PAXIP1	22976	bcgsc.ca	37	7	154745994	154745994	+	Missense_Mutation	SNP	T	T	C	rs78770148		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PAXIP1-228	NM_007349	exon16	c.A2792G	p.E931G	CATTCTTCCAGCC	.	68	26	124	0	.	5	4	1	0	0
CSMD1	64478	bcgsc.ca	37	8	2820801	2820801	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CSMD1-86	NM_033225	exon60	c.G9397C	p.A3133P	GGATGGCGGAGTG	.	132	44	156	0	.	0	0	0	0	0
MFHAS1	9258	bcgsc.ca	37	8	8749589	8749589	+	Missense_Mutation	SNP	T	T	C	rs201528283		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	MFHAS1-90	NM_004225	exon1	c.A980G	p.D327G	TTATTATCCAGCC	.	95	53	84	0	T|0.999;C|0.001	2	2	0	0	0
DPYSL2	1808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	26505196	26505196	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	DPYSL2-153	NM_001197293	exon11	c.T1476A	p.N492K	CACCAATGCAGCC	.	190	118	106	0	.	84	25	59	0	0
TMEM67	91147	bcgsc.ca	37	8	94800161	94800161	+	Missense_Mutation	SNP	A	A	C	rs79555627		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TMEM67-92	NM_153704	exon14	c.A1502C	p.N501T	ATGCCAACAGCCA	.	74	40	88	0	.	6	6	0	0	0
UBR5	51366	bcgsc.ca	37	8	103300468	103300468	+	Silent	SNP	T	T	C	rs199686475		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	UBR5-761	NM_015902	exon36	c.A4740G	p.G1580G	CTCTTCTCCAGCC	.	105	61	99	0	T|0.999;C|0.001	18	14	4	0	0
EMC2	9694	hgsc.bcm.edu;broad.mit.edu	37	8	109498794	109498794	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	.	NM_014673	exon11	c.C861G	p.D287E	CGAAGACATGTTG	.	26	3	51	0	.	48	48	0	0	0
LRRC24	441381	hgsc.bcm.edu	37	8	145748092	145748092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	LRRC24-90	NM_001024678	exon5	c.G1309A	p.G437R	GAGGCCCCCGCGC	.	22	19	6	2	.	5	0	5	0	0
PTPRD	5789	bcgsc.ca	37	9	8507427	8507427	+	Silent	SNP	C	C	G	rs202247306		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PTPRD-912	NM_130392	exon11	c.G1551C	p.G517G	TGGCTGCCCTGGT	.	44	16	139	0	C|0.999;G|0.001	0	0	0	0	0
TEK	7010	bcgsc.ca	37	9	27173339	27173339	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TEK-1584	NM_000459	exon6	c.A880G	p.K294E	GGCTGGAAGGGTC	.	30	12	93	0	.	0	0	0	0	0
KIAA1045	23349	bcgsc.ca	37	9	34972515	34972515	+	Missense_Mutation	SNP	G	G	C	rs201479121		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	KIAA1045-69	NM_015297	exon3	c.G551C	p.S184T	GCTGGAGCTGCCA	.	152	100	77	0	.	0	0	0	0	0
PIGO	84720	bcgsc.ca	37	9	35089137	35089137	+	Silent	SNP	A	A	C	rs200684520		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PIGO-290	NM_032634	exon11	c.T3222G	p.G1074G	CACAGCACCATCC	.	98	63	107	0	A|0.999;C|0.001	48	36	12	0	0
TLN1	7094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35711016	35711016	+	Silent	SNP	C	C	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TLN1-609	NM_006289	exon31	c.G4083A	p.K1361K	ACACTCCTTCTGG	.	184	49	49	0	.	135	84	51	0	0
RASEF	158158	bcgsc.ca	37	9	85615928	85615928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	RASEF-280	NM_152573	exon10	c.G1320T	p.L440F	GGTAGACAAGCCG	.	50	23	65	0	.	5	5	0	0	0
ZCCHC6	79670	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	88940291	88940291	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ZCCHC6-92	NM_024617	exon12	c.C1747G	p.R583G	ATTCCCGAGATAC	.	34	12	81	0	.	7	6	1	0	0
FOXE1	2304	bcgsc.ca	37	9	100616627	100616627	+	Missense_Mutation	SNP	G	G	C	rs199664273		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	FOXE1-130	NM_004473	exon1	c.G431C	p.R144P	TCCTGCGCCGCCG	.	65	41	43	0	.	0	0	0	0	0
HSDL2	84263	bcgsc.ca	37	9	115166387	115166387	+	Missense_Mutation	SNP	G	G	C	rs184202621		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	HSDL2-90	NM_032303	exon2	c.G130C	p.A44P	AAGACCGCCCAGC	.	84	35	84	1	A|0.001;G|0.999	50	50	0	0	0
AKNA	80709	broad.mit.edu	37	9	117139572	117139572	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	AKNA-94	NM_030767	exon3	c.T515G	p.V172G	GAAGCCACCCAGC	.	187	34	76	2	.	12	10	2	0	0
PRRC2B	84726	bcgsc.ca	37	9	134343066	134343066	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PRRC2B-24	NM_013318	exon12	c.T1837G	p.S613A	GCTGGGTCCCCTG	.	51	33	37	0	.	15	14	1	0	0
SETX	23064	bcgsc.ca	37	9	135139873	135139873	+	Missense_Mutation	SNP	G	G	C	rs200507089		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SETX-93	NM_015046	exon26	c.C7787G	p.A2596G	CTCAGAGCAGCCA	.	266	155	171	0	.	12	6	6	0	0
SNAPC4	6621	bcgsc.ca	37	9	139272015	139272015	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SNAPC4-90	NM_003086	exon21	c.A4264C	p.T1422P	TGGCTGTCGTGCA	.	104	55	65	0	.	4	3	1	0	0
GLRA2	2742	bcgsc.ca	37	X	14599357	14599357	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	GLRA2-131	NM_001118885	exon5	c.C323G	p.A108G	GGCTGGCGTACAG	.	82	35	133	0	.	0	0	0	0	0
CDKL5	6792	hgsc.bcm.edu	37	X	18646492	18646492	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CDKL5-838	NM_003159	exon18	c.G2498C	p.S833T	TTCAGAGCCAGCC	.	2096	296	576	0	.	0	0	0	0	0
DMD	1756	bcgsc.ca	37	X	31854856	31854856	+	Missense_Mutation	SNP	T	T	G	rs202090289		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	DMD-265	NM_004006	exon49	c.A7179C	p.K2393N	GGCTGGTTTTTCC	.	57	30	108	0	.	0	0	0	0	0
RPGR	6103	hgsc.bcm.edu	37	X	38145451	38145451	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	RPGR-131	NM_001034853	exon15	c.A2801G	p.E934G	TCCTCCTCTTCCC	.	4	2	2	0	.	0	0	0	0	0
MAOA	4128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	43590945	43590945	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	MAOA-194	NM_000240	exon8	c.A800C	p.K267T	AGTGCAAATACGT	.	95	30	82	0	.	0	0	0	0	0
NDUFB11	54539	broad.mit.edu;bcgsc.ca	37	X	47002143	47002143	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	NDUFB11-130	NM_019056	exon2	c.A208C	p.N70H	CTGGGTTCTGTGG	.	187	7	85	0	.	0	0	0	0	0
GNL3L	54552	hgsc.bcm.edu	37	X	54578752	54578752	+	Silent	SNP	A	A	C	rs201849856		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	GNL3L-131	NM_001184819	exon13	c.A1209C	p.P403P	ACCACCACCAGCC	.	558	198	145	2	.	16	16	0	0	0
AMER1	139285	hgsc.bcm.edu	37	X	63412720	63412720	+	Silent	SNP	T	T	C	rs200897699		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	.	NM_152424	exon2	c.A447G	p.G149G	TGTGGCTCCAGCC	.	407	137	71	1	.	1	1	0	0	0
NLGN3	54413	hgsc.bcm.edu	37	X	70387444	70387444	+	Silent	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	NLGN3-131	NM_181303	exon7	c.G1497C	p.S499S	CGGCTCGCCTACC	.	339	160	126	0	.	0	0	0	0	0
NOX1	27035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	100099033	100099033	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	NOX1-131	NM_007052	exon13	c.A1603G	p.T535A	CCAAAGTCCGAGG	.	34	13	20	0	.	0	0	0	0	0
RNF128	79589	broad.mit.edu	37	X	105970391	105970391	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	RNF128-227	NM_194463	exon1	c.T248G	p.V83G	CTGGGGTCCTGGT	.	116	42	25	0	.	28	19	9	0	0
NXT2	55916	bcgsc.ca	37	X	108779193	108779193	+	Missense_Mutation	SNP	A	A	C	rs201184200		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	NXT2-109	NM_018698	exon1	c.A82C	p.T28P	CCACACACCAGCC	.	33	24	26	2	.	0	0	0	0	0
DOCK11	139818	bcgsc.ca	37	X	117761500	117761500	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	DOCK11-93	NM_144658	exon33	c.T3622C	p.S1208P	TTTACTTCACCTG	.	69	22	139	0	.	23	23	0	0	0
AIFM1	9131	bcgsc.ca	37	X	129270135	129270135	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	AIFM1-586	NM_004208	exon12	c.C1190G	p.A397G	CCCACAGCTGCCA	.	71	45	87	1	.	17	17	0	0	0
FRMD7	90167	bcgsc.ca	37	X	131219749	131219749	+	Missense_Mutation	SNP	T	T	C	rs201803600		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	FRMD7-228	NM_194277	exon7	c.A505G	p.S169G	CTGGGCTCCTGCC	.	35	19	80	0	.	0	0	0	0	0
GPC4	2239	bcgsc.ca	37	X	132437060	132437060	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	GPC4-226	NM_001448	exon9	c.T1506G	p.C502W	ATACTCACAGCCA	.	332	109	406	0	.	106	79	27	0	0
SAGE1	55511	bcgsc.ca	37	X	134990742	134990742	+	Silent	SNP	A	A	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SAGE1-133	NM_018666	exon12	c.A1407G	p.G469G	GGCAGGAGCTAGT	.	86	33	196	2	.	0	0	0	0	0
CNGA2	1260	hgsc.bcm.edu	37	X	150906986	150906986	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CNGA2-193	NM_005140	exon2	c.T31C	p.S11P	AAGAGCTCCCCAG	.	613	160	171	1	.	0	0	0	0	0
F8	2157	bcgsc.ca	37	X	154124444	154124444	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	F8-182	NM_000132	exon22	c.T6337C	p.S2113P	GGCTGGAGAACTT	.	158	48	256	1	.	1	1	0	0	0
PTPN14	5784	broad.mit.edu	37	1	214557049	214557051	+	In_Frame_Del	DEL	CCT	CCT	-	rs79308381	alternate_allele	TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	CCT	CCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PTPN14-290	NM_005401	exon13	c.2147_2149del	p.716_717del	CTGGAGCCTCCTC	.	229	8	62	0	.	0	0	0	0	0
PRB2	653247	broad.mit.edu	37	12	11545949	11545951	+	In_Frame_Del	DEL	TGC	TGC	-	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	TGC	TGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PRB2-22	NM_006248	exon3	c.1061_1063del	p.354_355del	GGGACTTGCTGCC	.	1460	15	554	0	.	0	0	0	0	0
SLC24A1	9187	broad.mit.edu	37	15	65918177	65918179	+	In_Frame_Del	DEL	CTG	CTG	-	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	CTG	CTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	.	NM_004727	exon2	c.1759_1761del	p.587_587del	GAGAGCCTGCTGC	.	273	13	89	0	.	0	0	0	0	0
RELB	5971	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	45515450	45515452	+	Targeted_Region	DEL	CCG	CCG	-	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	CCG	CCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	RELB-847	.	.	.	.	.	.	74	33	31	0	.	0	0	0	0	0
C2orf71	388939	broad.mit.edu	37	2	29295647	29295649	+	In_Frame_Del	DEL	TCC	TCC	-	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	TCC	TCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	C2orf71-91	NM_001029883	exon1	c.1479_1481del	p.493_494del	TTGTCTTCCTCCT	.	771	7	152	0	.	0	0	0	0	0
AHCY	191	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	32868894	32868914	+	In_Frame_Del	DEL	CTGGGCTTGCTTCTCAGTTAG	CTGGGCTTGCTTCTCAGTTAG	-	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	CTGGGCTTGCTTCTCAGTTAG	CTGGGCTTGCTTCTCAGTTAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	AHCY-91	NM_000687	exon10	c.1225_1245del	p.409_415del	.	.	104	26	44	0	.	0	0	0	0	0
NEFH	4744	broad.mit.edu	37	22	29885754	29885777	+	In_Frame_Del	DEL	AAGTCCCCAGTGAAGGAAGAAGCA	AAGTCCCCAGTGAAGGAAGAAGCA	-	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	AAGTCCCCAGTGAAGGAAGAAGCA	AAGTCCCCAGTGAAGGAAGAAGCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	NEFH-90	NM_021076	exon4	c.2125_2148del	p.709_716del	AAGGCCAAGTCCC	.	379	8	127	0	.	0	0	0	0	0
DBR1	51163	broad.mit.edu	37	3	137880741	137880743	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	TCG	TCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	DBR1-90	NM_016216	exon8	c.1623_1625del	p.541_542del	GCTGCATCGTCAT	.	342	8	73	0	.	0	0	0	0	0
FGF10	2255	broad.mit.edu	37	5	44388715	44388717	+	In_Frame_Del	DEL	AGC	AGC	-	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	AGC	AGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	FGF10-522	NM_004465	exon1	c.68_70del	p.23_24del	ACAAAAAGCAGCA	.	245	6	65	0	.	0	0	0	0	0
URGCP	55665	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	43916495	43916495	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	URGCP-94	NM_001077663	exon6	c.2567delG	p.G856fs	.	.	167	39	42	0	.	0	0	0	0	0
PLXNA3	55558	broad.mit.edu	37	X	153688565	153688565	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PLXNA3-132	NM_017514	exon2	c.42delG	p.V14fs	TGCCGTGGGGGGG	.	408	7	83	0	.	0	0	0	0	0
TAS1R1	80835	broad.mit.edu	37	1	6638984	6638985	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TAS1R1-516	NM_138697	exon6	c.1866_1867insT	p.F622fs	TGGCTTCTTTGGG	.	148	32	52	0	.	0	0	0	0	0
ADC	113451	broad.mit.edu	37	1	33583680	33583681	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ADC-92	NM_052998	exon11	c.1207_1208insC	p.A403fs	ACCCAGGCCTGCC	.	199	3	84	0	.	0	0	0	0	0
CAP1	10487	broad.mit.edu	37	1	40535489	40535490	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CAP1-91	NM_006367	exon9	c.936_937insG	p.K312fs	CCCCAAACGAGCC	.	117	8	93	0	.	0	0	0	0	0
SCMH1	22955	hgsc.bcm.edu	37	1	41579112	41579113	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SCMH1-90	NM_001172219	exon8	c.588_589insC	p.P196fs	.	.	107	20	55	0	.	0	0	0	0	0
WDR78	79819	broad.mit.edu	37	1	67390432	67390433	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	WDR78-92	NM_024763	exon1	c.83_84insC	p.Q28fs	TTTTTTTGGCCGC	.	350	12	145	0	.	0	0	0	0	0
AMPD2	271	broad.mit.edu	37	1	110167929	110167930	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	AMPD2-292	NM_001257360	exon3	c.258_259insC	p.A86fs	AGAGGCTCGGGGT	.	121	22	58	0	.	0	0	0	0	0
CGN	57530	bcgsc.ca	37	1	151491486	151491487	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CGN-93	NM_020770	exon2	c.491_492insT	p.A164fs	AAGTGGCTTCCCC	.	364	69	129	0	.	0	0	0	0	0
S100A7	6278	bcgsc.ca	37	1	153430290	153430291	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	S100A7-91	NM_002963	exon3	c.298_299insC	p.S100fs	ACTGGCTGCCCCC	.	199	36	88	0	.	0	0	0	0	0
MIA3	375056	bcgsc.ca	37	1	222837351	222837352	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	MIA3-98	NM_198551	exon27	c.5274_5275insC	p.A1758fs	TATGGCTCCAAAA	.	120	22	77	0	.	0	0	0	0	0
ITPRIP	85450	bcgsc.ca	37	10	106074688	106074689	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ITPRIP-90	NM_001272013	exon2	c.1122_1123insC	p.P374fs	GGAGGCTGGGGTG	.	339	96	104	0	.	0	0	0	0	0
PDHX	8050	bcgsc.ca	37	11	34988257	34988258	+	Frame_Shift_Ins	INS	-	-	ACTCCAGCCCCCC	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PDHX-226	NM_003477	exon6	c.712_713insACTCCAGCCCCCC	p.T238fs	GCCCCCACAGCCA	.	180	0	119	0	.	0	0	0	0	0
DAGLA	747	broad.mit.edu	37	11	61495728	61495729	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	DAGLA-92	NM_006133	exon7	c.740_741insG	p.Q247fs	AGCGGCAGCGGGC	.	314	5	87	0	.	0	0	0	0	0
GDPD5	81544	broad.mit.edu	37	11	75146590	75146591	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	GDPD5-91	NM_030792	exon17	c.1780_1781insC	p.S594fs	TGTGGCTGCCACC	.	307	4	80	0	.	0	0	0	0	0
KRT83	3889	broad.mit.edu	37	12	52715037	52715038	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	KRT83-91	NM_002282	exon1	c.83_84insA	p.S28fs	CAGCGGCTTGGCC	.	167	9	104	0	.	0	0	0	0	0
ARHGEF25	115557	bcgsc.ca	37	12	58010627	58010628	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ARHGEF25-653	NM_001111270	exon16	c.1810_1811insC	p.T604fs	CCAAAAACCCCTC	.	252	71	205	0	.	0	0	0	0	0
SLC26A10	65012	bcgsc.ca	37	12	58017668	58017669	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SLC26A10-531	NM_133489	exon8	c.1103_1104insG	p.L368fs	TGTGGCTGGGGCC	.	289	72	112	0	.	0	0	0	0	0
LINC00173	100287569	broad.mit.edu	37	12	116972647	116972648	+	RNA	INS	-	-	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	.	.	.	.	.	TCCCGGGCAGCCG	.	104	6	56	0	.	0	0	0	0	0
ONECUT1	3175	broad.mit.edu	37	15	53081466	53081467	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ONECUT1-68	NM_004498	exon1	c.616_617insC	p.A206fs	GCATGGCGGCCCC	.	311	6	84	0	.	0	0	0	0	0
ADPGK	83440	broad.mit.edu	37	15	73044826	73044827	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ADPGK-90	NM_031284	exon7	c.1347_1348insA	p.K449fs	TACTGGCTTGTTT	.	310	7	153	0	.	0	0	0	0	0
MFGE8	4240	bcgsc.ca	37	15	89453134	89453135	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	MFGE8-91	NM_001114614	exon2	c.94_95insC	p.C32fs	TGTGGCAGGGGTT	.	257	68	104	3	.	0	0	0	0	0
METTL22	79091	bcgsc.ca	37	16	8736397	8736398	+	Frame_Shift_Ins	INS	-	-	TCCCTCCC	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	METTL22-90	NM_024109	exon9	c.985_986insTCCCTCCC	p.T329fs	GCCTGCACAGCCA	.	312	0	230	0	.	0	0	0	0	0
ANKRD11	29123	broad.mit.edu	37	16	89352564	89352565	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ANKRD11-139	NM_013275	exon8	c.775_776insG	p.N259fs	GCGGGTTCCCTCC	.	536	7	191	0	.	0	0	0	0	0
ALDOC	230	bcgsc.ca	37	17	26900783	26900784	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ALDOC-651	NM_005165	exon8	c.969_970insC	p.A323fs	AGTGGCAGCCCCA	.	567	121	155	0	.	0	0	0	0	0
FKBP10	60681	broad.mit.edu	37	17	39975558	39975559	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	FKBP10-227	NM_021939	exon5	c.824_825insC	p.L275fs	TGGAGCTCCCCCC	.	492	6	113	0	.	0	0	0	0	0
KAT2A	2648	broad.mit.edu;bcgsc.ca	37	17	40272817	40272818	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	KAT2A-523	NM_021078	exon2	c.370_371insG	p.K124fs	GGTTTTTCCAGCC	.	300	85	57	0	.	0	0	0	0	0
GHDC	84514	broad.mit.edu	37	17	40344321	40344322	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	GHDC-90	NM_001142623	exon5	c.827_828insG	p.A276fs	CCGAGGGCAGCCA	.	507	13	136	0	.	0	0	0	0	0
BRCA1	672	bcgsc.ca	37	17	41197706	41197707	+	In_Frame_Ins	INS	-	-	GGGGGGGGT	rs138690298	bycluster;by1000genomes;alternate_allele	TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	BRCA1-3415	NM_007300	exon24	c.5644_5645insACCCCCCCC	p.S1882delinsTPPS	AGTGGCTGTGGGG	.	111	8	37	0	.	0	0	0	0	0
WNT3	7473	bcgsc.ca	37	17	44851096	44851097	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	WNT3-522	NM_030753	exon2	c.260_261insC	p.W87fs	CAGCGGCGGCCCC	.	313	80	93	0	.	0	0	0	0	0
PPAN	56342	bcgsc.ca	37	19	10218222	10218223	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PPAN-90	NM_020230	exon3	c.231_232insG	p.A77fs	AGTGGCTGGGCCC	.	266	105	89	0	.	0	0	0	0	0
DNMT1	1786	broad.mit.edu	37	19	10250846	10250847	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	DNMT1-660	NM_001130823	exon33	c.3682_3683insG	p.P1228fs	TCTGGGGCAGCCG	.	208	16	80	0	.	0	0	0	0	0
FOSB	2354	bcgsc.ca	37	19	45974012	45974013	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	FOSB-848	NM_006732	exon2	c.252_253insC	p.G84fs	CCAGGGGCAGCCA	.	426	79	209	0	.	0	0	0	0	0
NUP62	23636	bcgsc.ca	37	19	50411672	50411673	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	NUP62-615	NM_001193357	exon2	c.1393_1394insC	p.A465fs	TGTCGGCGGGGGC	.	695	114	248	2	.	0	0	0	0	0
ABCG8	64241	bcgsc.ca	37	2	44079968	44079969	+	Nonsense_Mutation	INS	-	-	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ABCG8-94	NM_022437	exon6	c.925_926insA	p.Y309_P310delinsX	ATCGGCTACCCCT	.	376	72	100	0	.	0	0	0	0	0
TGFBRAP1	9392	bcgsc.ca	37	2	105924084	105924085	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TGFBRAP1-91	NM_004257	exon2	c.675_676insG	p.G225fs	TCCGGGGCCCGCC	.	747	123	235	4	.	0	0	0	0	0
IWS1	55677	bcgsc.ca	37	2	128262546	128262547	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	IWS1-91	NM_017969	exon3	c.933_934insC	p.P311fs	ACTGGCAGGCCCC	.	215	65	224	1	.	0	0	0	0	0
SLC41A3	54946	bcgsc.ca	37	3	125786910	125786911	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SLC41A3-90	NM_001008486	exon2	c.153_154insA	p.K51fs	CAGTGGCTTGGGG	.	709	137	167	0	.	0	0	0	0	0
FGFR3	2261	broad.mit.edu	37	4	1807542	1807543	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	FGFR3-9542	NM_001163213	exon13	c.1717_1718insG	p.R573fs	GCGCGGCGGCCCC	.	318	7	92	0	.	0	0	0	0	0
PCDH10	57575	broad.mit.edu	37	4	134072600	134072601	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PCDH10-92	NM_032961	exon1	c.1305_1306insC	p.A435fs	AGTGGCTCGGGAC	.	547	5	235	0	.	0	0	0	0	0
FAM53C	51307	broad.mit.edu	37	5	137680780	137680781	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	FAM53C-91	NM_001135647	exon4	c.403_404insG	p.R135fs	GTGTGGCGGCCCG	.	465	10	146	0	.	0	0	0	0	0
PODXL	5420	broad.mit.edu	37	7	131195806	131195807	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PODXL-136	NM_001018111	exon2	c.487_488insC	p.S163fs	TGTGGCTGCTTTT	.	1216	8	263	0	.	0	0	0	0	0
CRAT	1384	bcgsc.ca	37	9	131864811	131864812	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CRAT-90	NM_000755	exon5	c.498_499insA	p.K166fs	CAGTGGCTTCCCC	.	956	174	295	0	.	0	0	0	0	0
APEX2	27301	broad.mit.edu	37	X	55033524	55033525	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	APEX2-659	NM_014481	exon6	c.1213_1214insA	p.Q405fs	TGTCCCCAAGCCT	.	171	7	38	0	.	0	0	0	0	0
UTP14A	10813	broad.mit.edu	37	X	129045830	129045831	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	UTP14A-132	NM_006649	exon6	c.470_471insG	p.L157fs	AGCAGCTGGTTTT	.	315	9	106	0	.	0	0	0	0	0
BCORL1	63035	broad.mit.edu	37	X	129146953	129146954	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	BCORL1-294	NM_021946	exon3	c.205_206insG	p.S69fs	AGTGGCAGCAATG	.	765	9	237	0	.	0	0	0	0	0
