Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
SKI	6497	hgsc.bcm.edu	37	1	2160390	2160390	+	Missense_Mutation	SNP	C	C	G	rs28384811		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	SKI-838	NM_003036	exon1	c.C185G	p.A62G	TGCCGGCGCCGGT	.	6	4	0	0	C|0.953;G|0.047	0	0	0	0	0
MCOLN3	55283	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	85491894	85491894	+	Silent	SNP	G	G	C	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	MCOLN3-91	NM_018298	exon8	c.C906G	p.L302L	AATGCAGAGGATT	.	116	44	132	0	.	2	2	0	0	0
LCE3D	84648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152552161	152552161	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	LCE3D-68	NM_032563	exon2	c.C252T	p.C84C	ATGGCCGCAGCCA	.	251	86	280	2	.	0	0	0	0	0
BCAN	63827	broad.mit.edu	37	1	156615922	156615922	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	BCAN-516	NM_198427	exon2	c.G76C	p.E26Q	GTTCTGGAAGGAG	.	62	3	55	0	.	33	33	0	0	0
CHD4	1108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6711561	6711561	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	CHD4-228	NM_001273	exon3	c.G203C	p.S68T	CGCTTGCTCTTAG	.	417	127	520	0	.	82	57	25	0	0
LNX2	222484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	28143269	28143269	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	LNX2-228	NM_153371	exon3	c.C552T	p.G184G	CACTGCGCCTGTC	.	346	119	339	1	.	20	9	11	0	0
KLHL1	57626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	70549759	70549759	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	KLHL1-90	NM_020866	exon2	c.G673C	p.A225P	TATGTGCAGGTAT	.	157	50	136	0	.	0	0	0	0	0
AHNAK2	113146	ucsc.edu	37	14	105418145	105418145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	AHNAK2-47	NM_138420	exon7	c.C3643T	p.P1215S	AAGGGGGCTGAAT	.	45	1	90	0	.	137	97	40	0	0
UBE3A	7337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	25616649	25616649	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	UBE3A-660	NM_000462	exon7	c.A681T	p.L227F	AGGGCCTAATTTT	.	231	80	226	0	.	75	41	34	0	0
CCDC78	124093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	775528	775528	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	CCDC78-91	NM_001031737	exon4	c.C320A	p.T107N	TGGCTGGTGCCAT	.	58	20	47	0	.	0	0	0	0	0
SNX29	92017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	12618621	12618621	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	SNX29-23	NM_032167	exon20	c.C2241T	p.N747N	CATGAACAAAGTC	.	110	40	128	0	.	80	41	39	0	0
ABCC11	85320	ucsc.edu	37	16	48210875	48210875	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	ABCC11-95	NM_033151	exon24	c.C3498T	p.R1166R	GTGGCCGCGGATG	.	42	4	48	0	.	0	0	0	0	0
GP1BA	2811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	4837738	4837738	+	Silent	SNP	A	A	G	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	.	NM_000173	exon2	c.A1839G	p.V613V	GTGGGTACGGCCT	.	176	75	194	1	.	7	5	2	0	0
ODF4	146852	broad.mit.edu	37	17	8243446	8243446	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	ODF4-69	NM_153007	exon1	c.A77G	p.E26G	GAAAGGAAAGGAA	.	67	4	94	0	.	0	0	0	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA	.	443	62	365	46	.	66	6	60	0	0
FAM83G	644815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18881233	18881233	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	FAM83G-69	NM_001039999	exon5	c.A1746T	p.E582D	ATCATCTTCTTCT	.	131	44	156	0	.	15	5	10	0	0
CDK5R1	8851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	30815101	30815101	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	CDK5R1-651	NM_003885	exon2	c.C463T	p.L155L	CGCTGCCTGGGTG	.	68	26	85	0	.	3	2	1	0	0
ZNF700	90592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	12060395	12060395	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	ZNF700-90	NM_001271848	exon4	c.C1565G	p.S522C	TTTATTCTGCCAA	.	66	33	88	0	.	20	9	11	0	0
CHERP	10523	hgsc.bcm.edu	37	19	16640580	16640580	+	Silent	SNP	T	T	C	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	CHERP-92	NM_006387	exon8	c.A1008G	p.Q336Q	CTGCTGTTGCTGC	.	49	4	46	2	.	6934	263	6670	0	1
IL4I1	259307	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	50393785	50393785	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	IL4I1-523	NM_172374	exon10	c.G912A	p.L304L	GTTCAACAGCACA	.	50	21	42	0	.	17	11	6	0	0
ZNF615	284370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52496292	52496292	+	Silent	SNP	C	C	A	rs146634089	alternate_allele	TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	ZNF615-95	NM_001199324	exon7	c.G2070T	p.P690P	TTTGTACGGTTTC	.	201	83	205	2	C|1.000;T|0.000	8	5	3	0	0
TRIM28	10155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	59057198	59057198	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	TRIM28-870	NM_005762	exon3	c.G521A	p.C174Y	CTCTGTGTGAGAC	.	94	37	129	0	.	153	81	72	0	0
TRAPPC12	51112	hgsc.bcm.edu	37	2	3391827	3391827	+	Missense_Mutation	SNP	G	G	C	rs145175293	by1000genomes;alternate_allele	TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	.	NM_016030	exon2	c.G433C	p.A145P	GAAGCCGCGCGCC	.	4	4	2	1	G|0.999;A|0.001	5	0	5	0	0
ACTG2	72	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74128513	74128513	+	Silent	SNP	T	T	C	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	ACTG2-90	NM_001199893	exon2	c.T75C	p.D25D	AGGAGATGATGCC	.	95	32	69	1	.	0	0	0	0	0
SULT1C4	27233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	108994906	108994906	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	SULT1C4-22	NM_006588	exon1	c.T113C	p.I38T	ATAAGATCTGGAA	.	315	134	289	0	.	293	135	158	0	0
KRTAP26-1	388818	hgsc.bcm.edu;broad.mit.edu	37	21	31692296	31692296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	KRTAP26-1-69	NM_203405	exon1	c.C58T	p.R20C	TATGGCGGGAGGT	.	63	5	77	1	.	0	0	0	0	0
PKDREJ	10343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	46654232	46654232	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	PKDREJ-156	NM_006071	exon1	c.T4988A	p.M1663K	ATACGCATTCCAT	.	110	43	94	1	.	0	0	0	0	0
ROBO1	6091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	78683096	78683096	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	ROBO1-67	NM_002941	exon24	c.G3470T	p.S1157I	GTACTACTGCCCC	.	155	38	128	0	.	0	0	0	0	0
KIAA2018	205717	hgsc.bcm.edu	37	3	113376148	113376148	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	KIAA2018-93	NM_001009899	exon7	c.A4381C	p.K1461Q	GCTGCTTTATGTA	.	105	7	52	0	.	6	6	0	0	0
SSR3	6747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	156266708	156266708	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	SSR3-90	NM_007107	exon3	c.G345T	p.K115N	TTTCTCCTTCCGA	.	116	26	77	0	.	4	3	1	0	0
HELQ	113510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	84342848	84342848	+	Silent	SNP	A	A	G	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	HELQ-155	NM_133636	exon15	c.T2817C	p.F939F	AAGAACAAAAGAC	.	61	26	58	0	.	9	4	5	0	0
BHMT	635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	78415091	78415091	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	BHMT-91	NM_001713	exon3	c.T176C	p.L59P	GCCAGCTTCATCG	.	112	42	98	0	.	0	0	0	0	0
PGGT1B	5229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	114573574	114573574	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	PGGT1B-90	NM_005023	exon4	c.C460T	p.L154F	GCTGAAGGGCTCT	.	188	79	161	0	.	28	16	12	0	0
WDR55	54853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140049032	140049032	+	Silent	SNP	T	T	C	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	WDR55-91	NM_017706	exon7	c.T945C	p.H315H	TGGCCATGACCAG	.	45	18	36	0	.	37	24	13	0	0
FGFR4	2264	broad.mit.edu;ucsc.edu	37	5	176522539	176522539	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	FGFR4-1460	NM_002011	exon13	c.C1636T	p.L546L	GGGCCCCTGTACG	.	13	3	17	0	.	0	0	0	0	0
RUNX2	860	hgsc.bcm.edu	37	6	45390482	45390482	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	RUNX2-417	NM_001024630	exon3	c.C211G	p.Q71E	CAGCAGCAGGAGG	.	41	3	53	0	.	1	1	0	0	0
REV3L	5980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	111632330	111632330	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	REV3L-294	NM_002912	exon29	c.T8737A	p.Y2913N	CTCTGTATTCCTT	.	267	91	258	0	.	32	20	12	0	0
ACTB	60	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	5567465	5567465	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	ACTB-226	NM_001101	exon6	c.T1042C	p.S348P	ACAGCGAGGCCAG	.	136	59	156	1	.	7075	3918	3155	2	0
MET	4233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	116423474	116423474	+	Missense_Mutation	SNP	T	T	C	rs121913245		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	MET-5874	NM_001127500	exon19	c.T3803C	p.M1268T	AGTGGATGGCTTT	.	61	25	61	0	.	495	254	241	0	0
ARHGEF5	7984	hgsc.bcm.edu	37	7	144060273	144060273	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	ARHGEF5-229	NM_005435	exon2	c.G511C	p.E171Q	GAAGAGGAAACCT	.	603	101	620	1	.	43	40	3	0	0
TOPORS	10210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	32543270	32543270	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	TOPORS-230	NM_005802	exon3	c.A1253G	p.D418G	GTTTCATCATCCC	.	140	59	156	0	.	38	22	16	0	0
SPTAN1	6709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131361264	131361264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	SPTAN1-158	NM_003127	exon26	c.G3542T	p.R1181M	TGCCCAGGGTAAG	.	129	57	131	0	.	1	1	0	0	0
AGPAT2	10555	bcgsc.ca	37	9	139581687	139581687	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	AGPAT2-90	NM_001012727	exon1	c.C123T	p.S41S	CACGGCGGACACC	.	68	6	70	0	.	61	60	0	1	0
SPRED2	200734	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	65561771	65561771	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	SPRED2-659	NM_181784	exon3	c.341delG	p.G114fs	.	.	192	68	198	0	.	0	0	0	0	0
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	170145584	170145584	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	LRP2-175	NM_004525	exon9	c.994delT	p.C332fs	.	.	142	41	136	0	.	0	0	0	0	0
NFE2L3	9603	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	26223344	26223347	+	Frame_Shift_Del	DEL	TTCT	TTCT	-	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	TTCT	TTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	NFE2L3-94	NM_004289	exon3	c.774_777del	p.258_259del	.	.	129	39	110	0	.	0	0	0	0	0
TNC	3371	hgsc.bcm.edu	37	9	117808884	117808922	+	In_Frame_Del	DEL	CATCAGCTGTCCAGGACAGACGGAAACCGTCTGGGGTGG	CATCAGCTGTCCAGGACAGACGGAAACCGTCTGGGGTGG	-	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	CATCAGCTGTCCAGGACAGACGGAAACCGTCTGGGGTGG	CATCAGCTGTCCAGGACAGACGGAAACCGTCTGGGGTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	TNC-517	NM_002160	exon17	c.4892_4930del	p.1631_1644del	.	.	89	22	140	0	.	0	0	0	0	0
