Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
PRAMEF2	65122	hgsc.bcm.edu	37	1	12919095	12919095	+	Silent	SNP	A	A	C	rs116865587	byfrequency;alternate_allele	TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	PRAMEF2-68	NM_023014	exon2	c.A231C	p.P77P	GGAGCCATTGAAA	.	39	2	153	1	A|0.974;G|0.026	0	0	0	0	0
HFM1	164045	hgsc.bcm.edu	37	1	91844675	91844675	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	HFM1-112	NM_001017975	exon9	c.C1103G	p.T368R	ATTACTGTATCTC	.	28	2	43	0	.	0	0	0	0	0
EVI5	7813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	93160869	93160869	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	EVI5-136	NM_005665	exon7	c.G1039C	p.E347Q	TTACCTCAGACAT	.	66	7	135	0	.	0	0	0	0	0
ASH1L	55870	broad.mit.edu	37	1	155451419	155451419	+	Silent	SNP	T	T	C	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	ASH1L-234	NM_018489	exon3	c.A1242G	p.A414A	CAGACCTGCCAAA	.	145	3	154	0	.	8	8	0	0	0
OR6Y1	391112	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	158517503	158517503	+	Silent	SNP	A	A	T	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	OR6Y1-69	NM_001005189	exon1	c.T393A	p.I131I	ATTACAAATGGCT	.	104	8	100	0	.	0	0	0	0	0
NUAK2	81788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	205274389	205274389	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	NUAK2-391	NM_030952	exon6	c.A761G	p.D254G	TTATGGTCATGCC	.	69	17	87	0	.	61	32	29	0	0
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	216138718	216138718	+	Missense_Mutation	SNP	C	C	T	rs201386640		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	USH2A-115	NM_206933	exon37	c.G7061A	p.R2354H	TTAGGGCGAAAAG	.	166	54	200	0	C|0.999;T|0.000	0	0	0	0	0
SDE2	163859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	226180666	226180666	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	.	NM_152608	exon3	c.T276G	p.I92M	CTTCTCAATCTGA	.	69	25	89	0	.	15	9	6	0	0
FH	2271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	241663812	241663812	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	FH-416	NM_000143	exon9	c.C1315T	p.Q439X	TGGCCTGGATTCC	.	218	91	195	0	.	49	42	7	0	0
C11orf80	79703	hgsc.bcm.edu;broad.mit.edu	37	11	66555634	66555634	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	.	NM_024650	exon5	c.T527C	p.I176T	CAGAAATACAGTC	.	47	3	73	0	.	0	0	0	0	0
GLB1L2	89944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	134241359	134241359	+	Silent	SNP	A	A	G	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	GLB1L2-25	NM_138342	exon14	c.A1401G	p.T467T	CAAGACAACGAAG	.	210	79	216	0	.	59	31	28	0	0
IPO8	10526	hgsc.bcm.edu;broad.mit.edu	37	12	30787080	30787080	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	IPO8-227	NM_006390	exon23	c.A2836G	p.S946G	GAGTACTGAACCC	.	66	5	72	0	.	58	53	5	0	0
ULK1	8408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	132395297	132395297	+	Silent	SNP	C	C	T	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	ULK1-758	NM_003565	exon12	c.C900T	p.S300S	GGGGTCCGGCAGC	.	81	31	95	0	.	22	12	10	0	0
DOCK9	23348	hgsc.bcm.edu	37	13	99536093	99536093	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	DOCK9-90	NM_001130049	exon22	c.C2446G	p.H816D	CCAGATGAGTGGA	.	7	2	35	0	.	18	18	0	0	0
JKAMP	51528	hgsc.bcm.edu	37	14	59965598	59965598	+	Silent	SNP	G	G	C	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	JKAMP-67	NM_016475	exon5	c.G612C	p.V204V	AACCGTGCTTCAG	.	36	2	26	0	.	51	51	0	0	0
SNURF	8926	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	25207297	25207297	+	Silent	SNP	C	C	T	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	SNURF-90	NM_005678	exon2	c.C51T	p.H17H	ACAGCACGTACCA	.	74	5	129	0	.	35	35	0	0	0
UACA	55075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	70987423	70987423	+	Silent	SNP	C	C	T	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	UACA-94	NM_018003	exon3	c.G234A	p.K78K	ATTCCCCTTTGAG	.	27	18	44	0	.	26	13	13	0	0
HCN4	10021	hgsc.bcm.edu	37	15	73660576	73660576	+	Silent	SNP	G	G	C	rs201193660		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	HCN4-96	NM_005477	exon1	c.C36G	p.L12L	GCTGTAGAGCCGC	.	3	2	4	1	G|0.989;C|0.011	0	0	0	0	0
KIAA0753	9851	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	6531560	6531560	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	KIAA0753-90	NM_014804	exon3	c.C595T	p.Q199X	GAGGCTGAAGTCC	.	157	9	179	0	.	20	18	2	0	0
TRPV2	51393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	16340169	16340169	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	TRPV2-91	NM_016113	exon15	c.A2261G	p.N754S	AGGAAAACTATGT	.	145	58	156	0	.	4	4	0	0	0
TTC25	83538	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40101470	40101470	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	TTC25-23	.	.	.	.	AAGCCATTGACAC	.	23	13	38	0	.	0	0	0	0	0
MYCBPAP	84073	ucsc.edu	37	17	48608775	48608775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	MYCBPAP-230	NM_032133	exon19	c.C2941T	p.R981C	GCTTTGCGCCTCT	.	31	4	24	0	.	0	0	0	0	0
ENPP7	339221	broad.mit.edu	37	17	77710872	77710872	+	Silent	SNP	C	C	T	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	ENPP7-92	NM_178543	exon4	c.C1059T	p.H353H	GGAGCACGGCTTT	.	94	5	119	0	.	0	0	0	0	0
SYT4	6860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	40853736	40853736	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	SYT4-132	NM_020783	exon2	c.G658C	p.D220H	TCTCATCAAAAGC	.	68	30	147	0	.	1	1	0	0	0
SERPINB10	5273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	61585305	61585305	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	SERPINB10-227	NM_005024	exon3	c.T341A	p.I114K	ATGCGATATATGG	.	44	6	83	0	.	0	0	0	0	0
ZSWIM4	65249	broad.mit.edu	37	19	13941242	13941242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	ZSWIM4-90	NM_023072	exon13	c.C2348T	p.S783L	ACCACTCGGCCTT	.	168	7	200	0	.	12	12	0	0	0
KXD1	79036	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	18679377	18679377	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	.	NM_001171948	exon6	c.A467T	p.Q156L	ATGTCCAGCCTGG	.	141	9	151	0	.	69	69	0	0	0
NKPD1	284353	broad.mit.edu	37	19	45656458	45656458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	NKPD1-68	NM_198478	exon4	c.C1237T	p.R413W	CCAGCCGCTCGAT	.	5	4	13	0	.	0	0	0	0	0
MYBPC2	4606	broad.mit.edu	37	19	50939282	50939282	+	Silent	SNP	G	G	T	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	MYBPC2-67	NM_004533	exon4	c.G210T	p.V70V	CGCAGTGGTCGTG	.	12	6	17	0	.	0	0	0	0	0
BIRC6	57448	hgsc.bcm.edu	37	2	32639897	32639897	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	BIRC6-233	NM_016252	exon10	c.T1538C	p.L513P	GCATTCTCCAACA	.	56	3	66	0	.	13	13	0	0	0
EIF2AK3	9451	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	88890366	88890366	+	Silent	SNP	C	C	T	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	EIF2AK3-361	NM_004836	exon5	c.G972A	p.K324K	TCCCTTCTTACTG	.	170	11	191	1	.	23	21	2	0	0
SCN2A	6326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	166201262	166201262	+	Silent	SNP	C	C	G	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	SCN2A-142	NM_001040143	exon15	c.C2760G	p.L920L	TGAACTCCCACGC	.	182	26	199	0	.	5	3	2	0	0
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	168105759	168105759	+	Silent	SNP	G	G	A	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	XIRP2-104	NM_152381	exon9	c.G7857A	p.R2619R	TGCTCGGATACTA	.	147	41	134	0	.	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	179598482	179598482	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	TTN-636	NM_001267550	exon53	c.G15634T	p.G5212X	TTTTTCCGTCTTC	.	197	14	251	1	.	0	0	0	0	0
SESTD1	91404	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179986590	179986590	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	SESTD1-228	NM_178123	exon13	c.C1349T	p.S450F	GCCCAGGATGCCT	.	84	26	76	0	.	33	17	16	0	0
ICA1L	130026	broad.mit.edu	37	2	203693626	203693626	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	ICA1L-90	NM_178231	exon4	c.A107C	p.K36T	TCTTTTTTTCCTG	.	161	4	153	0	.	4	4	0	0	0
ABCB6	10058	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	220074990	220074990	+	Silent	SNP	G	G	A	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	ABCB6-153	NM_005689	exon18	c.C2382T	p.I794I	GACGAGGATCTGG	.	126	8	129	0	.	63	62	1	0	0
LSS	4047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	47615617	47615617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	LSS-90	NM_001001438	exon19	c.C1790T	p.A597V	ATACAGGCGAAGG	.	67	51	118	0	.	14	1	13	0	0
PRMT2	3275	bcgsc.ca	37	21	48083430	48083430	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	PRMT2-91	NM_206962	exon11	c.G1233A	p.W411X	GAGCTGGGCTGTC	.	49	4	89	0	.	88	88	0	0	0
APOL3	80833	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	22	36556768	36556768	+	Missense_Mutation	SNP	G	G	T	rs11089781	byfrequency;alternate_allele	TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	APOL3-90	NM_145640	exon1	c.C172A	p.Q58K	TGAGCTGTGTGGA	.	75	11	144	0	G|0.932;A|0.068	87	87	0	0	0
CNOT10	25904	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	32766999	32766999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	CNOT10-91	NM_001256742	exon9	c.G1100A	p.S367N	CCATGAGCAAGCA	.	133	8	177	0	.	24	19	5	0	0
RAD54L2	23132	hgsc.bcm.edu;bcgsc.ca	37	3	51664392	51664392	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	RAD54L2-93	NM_015106	exon5	c.A586G	p.S196G	GAAAAAAGCAGTC	.	79	4	105	1	.	0	0	0	0	0
CHIC2	26511	hgsc.bcm.edu	37	4	54876297	54876297	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	CHIC2-1082	NM_012110	exon6	c.T463G	p.F155V	GTAAAAATTCTAT	.	24	2	58	0	.	9	9	0	0	0
FHDC1	85462	bcgsc.ca	37	4	153886112	153886112	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	FHDC1-136	NM_033393	exon8	c.T1085C	p.V362A	ATCATGTTCAGAA	.	101	4	155	0	.	5	5	0	0	0
TAS2R1	50834	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	9629374	9629374	+	Silent	SNP	G	G	A	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	TAS2R1-93	NM_019599	exon1	c.C771T	p.F257F	AAAGATGAACCTT	.	85	7	103	0	.	0	0	0	0	0
HCN1	348980	ucsc.edu	37	5	45461992	45461992	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	HCN1-91	NM_021072	exon3	c.C967T	p.Q323X	AGTCCTGCAGTAG	.	41	4	60	0	.	0	0	0	0	0
SHROOM1	134549	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	132161119	132161119	+	Silent	SNP	C	C	T	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	SHROOM1-91	NM_133456	exon1	c.G714A	p.P238P	CCGCGCCGGCCCA	.	11	8	25	0	.	1	1	0	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140720783	140720783	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	PCDHGA2-71	NM_018915	exon1	c.T2245G	p.F749V	CGGGCTTTCCTGC	.	149	3	211	0	.	2	2	0	0	0
RUNX2	860	hgsc.bcm.edu	37	6	45390482	45390482	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	RUNX2-417	NM_001024630	exon3	c.C211G	p.Q71E	CAGCAGCAGGAGG	.	28	3	25	0	.	0	0	0	0	0
MTHFD1L	25902	hgsc.bcm.edu	37	6	151358132	151358132	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	MTHFD1L-292	NM_001242767	exon26	c.A2729G	p.K910R	TGGCAAAGACCCA	.	87	6	116	0	.	71	71	0	0	0
EPHB6	2051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	142561393	142561393	+	Silent	SNP	A	A	T	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	EPHB6-1489	NM_004445	exon6	c.A105T	p.V35V	AGAGGTATTGCTG	.	86	37	100	1	.	0	0	0	0	0
COL22A1	169044	broad.mit.edu	37	8	139767734	139767734	+	Silent	SNP	T	T	C	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	COL22A1-103	NM_152888	exon20	c.A1968G	p.K656K	TTCCCCTTTCAAG	.	268	4	299	0	.	0	0	0	0	0
KANK1	23189	broad.mit.edu;bcgsc.ca	37	9	732477	732477	+	Silent	SNP	G	G	A	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	KANK1-517	NM_001256876	exon10	c.G3105A	p.E1035E	AGAAGAGGAGGAG	.	130	5	176	1	.	51	51	0	0	0
KIAA1984	84960	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	139694856	139694856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	KIAA1984-91	NM_001039374	exon5	c.G454A	p.E152K	CAGCTGGAGAACA	.	17	6	20	0	.	3	3	0	0	0
ATP2B3	492	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	152823737	152823737	+	Silent	SNP	C	C	T	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	ATP2B3-109	NM_001001344	exon15	c.C2601T	p.A867A	CGTGGCCTTCACA	.	133	8	208	0	.	0	0	0	0	0
KLHL35	283212	broad.mit.edu	37	11	75140917	75140917	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	.	NM_001039548	exon1	c.758delT	p.L253fs	TTCTCCAGGAAGT	.	6	2	3	0	.	0	0	0	0	0
PUS3	83480	broad.mit.edu	37	11	125766029	125766029	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	PUS3-91	NM_031307	exon2	c.151delA	p.T51fs	GCTTAGTTTTTCC	.	238	18	249	0	.	0	0	0	0	0
KANSL2	54934	broad.mit.edu	37	12	49062988	49062988	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	.	NM_017822	exon6	c.777delA	p.K259fs	CAGACATTTTAAT	.	6	2	6	0	.	0	0	0	0	0
B2M	567	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	45003781	45003782	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	B2M-93	NM_004048	exon1	c.37_38del	p.13_13del	.	.	58	10	104	0	.	0	0	0	0	0
STARD3	10948	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	37809843	37809854	+	In_Frame_Del	DEL	CCTCCCTGGGCT	CCTCCCTGGGCT	-	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	CCTCCCTGGGCT	CCTCCCTGGGCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	STARD3-90	NM_006804	exon2	c.59_70del	p.20_24del	.	.	60	20	76	0	.	0	0	0	0	0
TAF1B	9014	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	10059757	10059763	+	Frame_Shift_Del	DEL	GCACACT	GCACACT	-	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	GCACACT	GCACACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	TAF1B-92	NM_005680	exon14	c.1373_1379del	p.458_460del	.	.	101	17	123	0	.	0	0	0	0	0
TCFL5	10732	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	61490803	61490806	+	Frame_Shift_Del	DEL	AGAA	AGAA	-	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	AGAA	AGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	TCFL5-581	NM_006602	exon3	c.904_907del	p.302_303del	.	.	210	74	228	0	.	0	0	0	0	0
NF2	4771	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	30061052	30061052	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	NF2-4696	NM_000268	exon9	c.884delT	p.L295fs	.	.	24	18	28	0	.	0	0	0	0	0
CACNG2	10369	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	37098492	37098492	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	CACNG2-90	NM_006078	exon1	c.130delA	p.S44fs	.	.	174	120	266	0	.	0	0	0	0	0
B2M	567	broad.mit.edu	37	15	45007645	45007646	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	B2M-93	NM_004048	exon2	c.92_93insA	p.S31fs	TTTACTCACGTCA	.	116	8	197	0	.	0	0	0	0	0
