Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
GRIK3	2899	broad.mit.edu	37	1	37271815	37271815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	GRIK3-158	NM_000831	exon14	c.C2204T	p.A735V	AGCAGCGCGTAGT	.	159	5	160	0	.	0	0	0	0	0
TTC4	7268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	55183223	55183223	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	TTC4-90	NM_004623	exon3	c.G288C	p.K96N	CTACAAGAAAGCT	.	156	55	176	0	.	9	5	4	0	0
CHD1L	9557	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	146747123	146747123	+	Silent	SNP	C	C	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	CHD1L-231	NM_004284	exon13	c.C1377A	p.G459G	CATTGGCCAAAAC	.	82	27	90	1	.	0	0	0	0	0
ASH1L	55870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	155313421	155313421	+	Silent	SNP	G	G	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	ASH1L-234	NM_018489	exon23	c.C8094T	p.R2698R	CTCAATGCGAAAG	.	177	64	186	0	.	5	2	3	0	0
LMNA	4000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156107474	156107474	+	Silent	SNP	A	A	C	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	LMNA-228	NM_170707	exon10	c.A1638C	p.S546S	GCGCTCAGTGACT	.	77	29	74	0	.	503	272	230	0	1
AXDND1	126859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	179339155	179339155	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	AXDND1-93	NM_144696	exon4	c.C316G	p.R106G	CCTGTTCGAAGGA	.	106	44	104	0	.	0	0	0	0	0
JMJD1C	221037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	64968540	64968540	+	Silent	SNP	A	A	G	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	JMJD1C-275	NM_032776	exon10	c.T2889C	p.F963F	TTCCATAAAAGCT	.	28	11	29	0	.	2	1	1	0	0
P4HA1	5033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	74810906	74810906	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	P4HA1-69	NM_001142596	exon7	c.C805T	p.Q269X	TTTTCTGATCAGA	.	65	34	76	0	.	14	14	0	0	0
FAM35A	54537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	88911776	88911776	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	FAM35A-94	NM_019054	exon3	c.C665G	p.S222X	ATAAGTCAAGGTC	.	113	40	134	0	.	23	17	6	0	0
ACCSL	390110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	44079985	44079985	+	Silent	SNP	C	C	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	ACCSL-95	NM_001031854	exon12	c.C1446T	p.L482L	TGGCCTCTATGTC	.	128	60	116	0	.	0	0	0	0	0
EXPH5	23086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	108381026	108381026	+	Silent	SNP	T	T	G	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	EXPH5-95	NM_015065	exon6	c.A5208C	p.T1736T	GGTGAATGTGATG	.	108	41	101	0	.	0	0	0	0	0
MCAM	4162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	119182661	119182661	+	Splice_Site	SNP	T	T	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	MCAM-137	NM_006500	exon11	c.1144-2A>T	.	CCTGTCTGGGATG	.	29	15	39	0	.	0	0	0	0	0
SLC2A14	144195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7984344	7984344	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	SLC2A14-91	NM_153449	exon5	c.T197A	p.I66N	TTATTGATAAATT	.	191	61	129	0	.	0	0	0	0	0
LRP6	4040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	12274330	12274330	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	LRP6-661	NM_002336	exon23	c.C4572G	p.H1524Q	TGCAAAGTGCCGG	.	166	37	120	0	.	2	1	1	0	0
ARID2	196528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	46244883	46244883	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	ARID2-100	NM_152641	exon15	c.A2977T	p.T993S	TCCTCTACCCCTC	.	393	114	248	0	.	2	2	0	0	0
KRT6B	3854	broad.mit.edu;bcgsc.ca	37	12	52845508	52845508	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	KRT6B-92	NM_005555	exon1	c.G355C	p.A119P	CACCAGCAAGGCC	.	1117	165	759	1	.	0	0	0	0	0
SRGAP1	57522	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	64521384	64521384	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	SRGAP1-653	NM_020762	exon20	c.C2420G	p.S807X	CGTTTTCAGACAC	.	243	149	220	2	.	0	0	0	0	0
NAV3	89795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	78591182	78591182	+	Splice_Site	SNP	G	G	C	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	NAV3-279	NM_014903	exon34	c.6380+1G>C	.	CAAATGGTATGCT	.	27	13	21	0	.	0	0	0	0	0
UBE2N	7334	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	93804921	93804921	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	UBE2N-659	NM_003348	exon2	c.A185T	p.Y62F	ATTGGGTATTCTT	.	346	72	309	1	.	77	57	20	0	0
ATXN2	6311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	111926345	111926345	+	Silent	SNP	A	A	G	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	ATXN2-136	NM_002973	exon15	c.T2655C	p.V885V	AGTCTGAACCCCT	.	154	85	99	0	.	27	6	21	0	0
CIT	11113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	120158284	120158284	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	CIT-399	NM_001206999	exon30	c.A3839G	p.K1280R	CTCACCTTTTTCT	.	163	88	127	0	.	0	0	0	0	0
VWA8	23078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	42440068	42440068	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	.	NM_015058	exon11	c.G1317A	p.M439I	TTTAACCATGTGA	.	73	36	75	0	.	4	3	1	0	0
TDRD3	81550	broad.mit.edu	37	13	61060035	61060035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	TDRD3-516	NM_001146070	exon7	c.G670A	p.E224K	GAATTTGAAAAGC	.	49	4	50	0	.	8	8	0	0	0
AP1G2	8906	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24030557	24030557	+	Silent	SNP	T	T	C	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	AP1G2-45	NM_003917	exon19	c.A1941G	p.P647P	ACCTCCTGGGGAG	.	92	37	73	1	.	58	29	29	0	0
SIX4	51804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	61186919	61186919	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	SIX4-154	NM_017420	exon2	c.A1108T	p.I370F	CCTGAATAAAAGA	.	103	37	110	0	.	0	0	0	0	0
GPHN	10243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	67647539	67647539	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	GPHN-228	NM_020806	exon23	c.G2195A	p.R732H	GCAGCCGTCTGAT	.	125	58	123	0	.	12	6	6	0	0
CASKIN1	57524	hgsc.bcm.edu;bcgsc.ca	37	16	2239295	2239295	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	CASKIN1-92	NM_020764	exon5	c.G430T	p.V144L	TGTCCACCATGCA	.	77	4	81	0	.	0	0	0	0	0
ACSM1	116285	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	20681301	20681301	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	ACSM1-91	NM_052956	exon5	c.T760A	p.L254I	TCCGTAATTTCCT	.	198	76	208	1	.	0	0	0	0	0
TMEM159	57146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	21185458	21185458	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	TMEM159-69	NM_020422	exon4	c.G393C	p.W131C	CTGCTGGTTTTCT	.	127	59	113	0	.	0	0	0	0	0
ZP2	7783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	21214557	21214557	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	ZP2-91	NM_003460	exon10	c.C988A	p.L330I	GGAGTAGGCATTT	.	54	31	62	0	.	0	0	0	0	0
SETD1A	9739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30976286	30976286	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	SETD1A-93	NM_014712	exon7	c.C1223A	p.S408Y	CACCTTCTTACAC	.	63	19	64	0	.	5	2	3	0	0
ATP6V0D1	9114	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67487539	67487539	+	Silent	SNP	G	G	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	ATP6V0D1-90	NM_004691	exon2	c.C210T	p.I70I	GTCATCGATGACT	.	144	63	140	2	.	70	46	24	0	0
THAP11	57215	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	67876718	67876718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	THAP11-90	NM_020457	exon1	c.G261T	p.E87D	CAATGAGCGCAAA	.	28	12	47	0	.	10	4	6	0	0
TBC1D26	353149	broad.mit.edu	37	17	15641610	15641610	+	Missense_Mutation	SNP	A	A	G	rs202131240		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	TBC1D26-90	NM_178571	exon7	c.A296G	p.Y99C	GAGTATACAAAGT	.	229	6	157	0	.	0	0	0	0	0
LGALS9	3965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	25967635	25967635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	LGALS9-226	NM_009587	exon3	c.G169A	p.D57N	GGAAATGACATTG	.	819	207	609	0	.	13	12	1	0	0
SMARCD2	6603	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	61910338	61910338	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	SMARCD2-227	NM_001098426	exon13	c.G1556T	p.R519M	TCCTGCCTTCGCT	.	210	113	150	1	.	72	32	40	0	0
WIPI1	55062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	66440668	66440668	+	Silent	SNP	C	C	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	WIPI1-90	NM_017983	exon4	c.G396A	p.L132L	GGTCTTCAACAGC	.	119	31	74	0	.	44	26	18	0	0
RBBP8	5932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	20562277	20562277	+	Silent	SNP	G	G	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	RBBP8-659	NM_203292	exon7	c.G525A	p.R175R	TAACCGGCTACGA	.	138	44	112	0	.	10	3	7	0	0
REXO1	57455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	1817252	1817252	+	Missense_Mutation	SNP	G	G	C	rs200984356		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	REXO1-90	NM_020695	exon12	c.C3167G	p.T1056S	GGGTGGGTGTCTC	.	68	25	33	0	G|1.000;C|0.000	18	9	9	0	0
LIPE	3991	broad.mit.edu;bcgsc.ca	37	19	42911843	42911843	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	LIPE-154	NM_005357	exon5	c.C1757A	p.T586K	GTGACCGTGAGCG	.	103	45	166	1	.	2	1	1	0	0
TRPM4	54795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49714007	49714007	+	Silent	SNP	G	G	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	TRPM4-91	NM_017636	exon22	c.G3369T	p.T1123T	GCTAACGTGGGAA	.	125	41	186	0	.	31	12	19	0	0
SIGLEC10	89790	broad.mit.edu;bcgsc.ca	37	19	51918318	51918318	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	SIGLEC10-91	NM_033130	exon8	c.G1375C	p.G459R	GCAGACCCTCAGC	.	19	7	23	0	.	0	0	0	0	0
TMC4	147798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54669261	54669261	+	Silent	SNP	G	G	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	TMC4-91	NM_001145303	exon6	c.C855A	p.S285S	AGCCTCGGACTCC	.	52	25	67	0	.	14	10	4	0	0
CAPN13	92291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	30987162	30987162	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	CAPN13-136	NM_144575	exon6	c.T535C	p.S179P	AATAGGATCCGAG	.	136	55	102	0	.	0	0	0	0	0
MAP4K3	8491	ucsc.edu;bcgsc.ca	37	2	39553361	39553361	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	MAP4K3-550	NM_001270425	exon9	c.T588A	p.D196E	CCAGAGATCACAG	.	164	68	168	4	.	1	0	1	0	0
XPO1	7514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	61705989	61705989	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	XPO1-229	NM_003400	exon25	c.A3182G	p.N1061S	TGTGGATTAAAGA	.	42	20	68	0	.	61	40	21	0	0
FAM161A	84140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	62067237	62067237	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	FAM161A-136	NM_032180	exon3	c.A902G	p.K301R	TTTTGCTTGACTA	.	46	21	67	0	.	1	0	1	0	0
RTKN	6242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74656034	74656034	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	RTKN-91	NM_001015055	exon7	c.T791C	p.L264P	AGGGTGAGTGTGG	.	232	68	249	0	.	98	62	35	1	0
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	84846836	84846836	+	Silent	SNP	T	T	G	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	DNAH6-69	NM_001370	exon24	c.T3600G	p.L1200L	TGAACTTCTGGAG	.	54	23	67	0	.	0	0	0	0	0
DNAH6	1768	broad.mit.edu	37	2	84896615	84896615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	DNAH6-69	NM_001370	exon38	c.G6287A	p.G2096E	TTACTGGAATAAC	.	77	3	90	0	.	0	0	0	0	0
NEB	4703	hgsc.bcm.edu;bcgsc.ca	37	2	152390040	152390040	+	Silent	SNP	G	G	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	NEB-145	NM_001271208	exon144	c.C21438A	p.A7146A	CATCTTGGCACTA	.	56	4	76	0	.	0	0	0	0	0
NEB	4703	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	152536245	152536245	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	NEB-145	NM_004543	exon32	c.C3245G	p.A1082G	CTCGCCGCCTGCC	.	53	31	55	1	.	0	0	0	0	0
AGPS	8540	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	178257747	178257747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	AGPS-92	NM_003659	exon1	c.C230T	p.A77V	CCGCCGCGCAGGA	.	53	31	51	0	.	5	3	2	0	0
FSIP2	401024	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	186672719	186672719	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	FSIP2-90	NM_173651	exon17	c.T18953C	p.I6318T	GTAAGATTAAACT	.	152	14	111	0	.	0	0	0	0	0
SF3B1	23451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	198265131	198265131	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	SF3B1-140	NM_012433	exon19	c.A2746G	p.T916A	CCACTGTGCCAAA	.	176	77	178	0	.	106	58	48	0	0
FAM182A	284800	broad.mit.edu	37	20	26061817	26061817	+	RNA	SNP	T	T	C	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	.	.	.	.	.	TTCTCCTGCTTAG	.	96	3	94	1	.	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29633899	29633899	+	RNA	SNP	G	G	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	FRG1B-22	.	.	.	.	ACAAGAGAACCAA	.	162	11	152	2	.	0	0	0	0	0
CASS4	57091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	55033659	55033659	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	CASS4-25	NM_020356	exon6	c.C2217A	p.H739Q	CAGTCACCTCTGC	.	94	11	106	0	.	0	0	0	0	0
SLCO4A1	28231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	61300283	61300283	+	Silent	SNP	G	G	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	SLCO4A1-91	NM_016354	exon11	c.G1878A	p.G626G	CGCAGGGGGCATC	.	20	14	19	0	.	4	0	4	0	0
UMODL1	89766	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	43547904	43547904	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	UMODL1-93	NM_173568	exon19	c.G4037T	p.R1346L	AACTCCGCGTCTG	.	245	103	201	1	.	0	0	0	0	0
COL18A1	80781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	46875643	46875643	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	COL18A1-90	NM_030582	exon1	c.C199G	p.R67G	ACCCCCCGGAATG	.	131	60	159	0	.	1	0	1	0	0
GAB4	128954	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	17488934	17488934	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	GAB4-91	NM_001037814	exon1	c.C71T	p.S24L	GGCCACGAAGACA	.	46	14	49	0	.	0	0	0	0	0
GRIP2	80852	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	14559362	14559362	+	Silent	SNP	G	G	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	GRIP2-69	.	.	.	.	GGGCACGCAGGGG	.	36	24	31	0	.	0	0	0	0	0
SCN11A	11280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	38966961	38966961	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	SCN11A-99	NM_014139	exon5	c.G657C	p.L219F	CAGGGGCAATAGT	.	141	53	132	0	.	0	0	0	0	0
NME6	10201	ucsc.edu	37	3	48338260	48338260	+	Silent	SNP	C	C	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	NME6-115	NM_005793	exon3	c.G174A	p.L58L	TCTCCACAGTAGT	.	66	2	55	0	.	3	3	0	0	0
PLXNB1	5364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	48465285	48465285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	PLXNB1-293	NM_001130082	exon3	c.G736A	p.A246T	CATAGGCACGAAA	.	188	81	218	0	.	54	25	29	0	0
CACNA2D2	9254	broad.mit.edu;bcgsc.ca	37	3	50513567	50513567	+	Silent	SNP	G	G	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	CACNA2D2-278	NM_001174051	exon2	c.C270A	p.G90G	CTGGACGCCTCCA	.	31	10	50	2	.	0	0	0	0	0
NISCH	11188	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	52505969	52505969	+	Silent	SNP	C	C	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	NISCH-93	NM_001276293	exon5	c.C549T	p.F183F	GGACTTCACCTGT	.	284	18	323	0	.	12	11	1	0	0
DNAJC13	23317	bcgsc.ca	37	3	132196969	132196969	+	Silent	SNP	T	T	C	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	DNAJC13-272	NM_015268	exon24	c.T2694C	p.I898I	TATCATTGGAATG	.	46	4	37	0	.	3	3	0	0	0
SKIL	6498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	170078913	170078913	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	SKIL-228	NM_001248008	exon1	c.A794T	p.E265V	AAGTGGAGCATGA	.	190	66	187	0	.	2	2	0	0	0
RUFY3	22902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	71629308	71629308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	RUFY3-90	NM_001130709	exon3	c.G572A	p.G191E	TCTGGGGGCCTCT	.	104	50	184	0	.	6	3	3	0	0
DSPP	1834	bcgsc.ca	37	4	88536953	88536953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	DSPP-90	NM_014208	exon5	c.G3139A	p.D1047N	AGCAGCGATAGCA	.	307	12	227	0	.	0	0	0	0	0
NSUN2	54888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	6600168	6600168	+	Silent	SNP	G	G	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	NSUN2-91	NM_017755	exon19	c.C2175T	p.T725T	CTGTCCGGTGCTG	.	146	64	125	0	.	29	16	13	0	0
FASTKD3	79072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	7867451	7867451	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	FASTKD3-156	NM_024091	exon2	c.A746G	p.E249G	AATGTTTCCAATT	.	32	11	31	0	.	2	0	2	0	0
DNAH5	1767	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	13814812	13814812	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	DNAH5-182	NM_001369	exon43	c.G7132T	p.E2378X	GAGGCTCGAAAAT	.	128	57	104	2	.	0	0	0	0	0
ZSWIM6	57688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	60840060	60840060	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	.	NM_020928	exon14	c.G3564T	p.Q1188H	CATTCAGTTTACA	.	138	50	136	0	.	4	3	1	0	0
ANKHD1	54882	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	139906526	139906526	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	ANKHD1-185	NM_017747	exon27	c.G4954A	p.V1652M	GGTGAAGTGACTC	.	149	63	167	1	.	0	0	0	0	0
PCDHB10	56126	bcgsc.ca	37	5	140573413	140573413	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	PCDHB10-92	NM_018930	exon1	c.A1288T	p.R430W	ACACCCAGGCTGA	.	143	33	186	1	.	3	3	0	0	0
PHACTR1	221692	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	13230366	13230366	+	Silent	SNP	C	C	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	.	NM_030948	exon10	c.C1332A	p.P444P	CCTTCCCAGGCAG	.	185	87	169	1	.	0	0	0	0	0
DPCR1	135656	ucsc.edu;bcgsc.ca	37	6	30917934	30917934	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	DPCR1-90	NM_080870	exon2	c.A1693G	p.R565G	GGAGACAGGACTC	.	218	74	196	2	.	0	0	0	0	0
MUC21	394263	bcgsc.ca	37	6	30954603	30954603	+	Silent	SNP	G	G	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	MUC21-92	NM_001010909	exon2	c.G651A	p.T217T	CAGAACGACCTCC	.	180	13	178	8	.	0	0	0	0	0
DOM3Z	1797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31938842	31938842	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	DOM3Z-90	NM_005510	exon3	c.G439A	p.E147K	AGCCCTCCTGCCG	.	88	34	90	0	.	30	14	16	0	0
PGK2	5232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	49753793	49753793	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	PGK2-91	NM_138733	exon1	c.G1108C	p.V370L	CTATAACAGTGAT	.	189	53	195	0	.	0	0	0	0	0
ABCA13	154664	bcgsc.ca	37	7	48685099	48685099	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	ABCA13-521	NM_152701	exon62	c.G15168T	p.L5056F	TCACTTGCCCATC	.	76	4	72	0	.	0	0	0	0	0
GIGYF1	64599	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	100279805	100279805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	GIGYF1-136	NM_022574	exon22	c.G2815A	p.D939N	TATAATCGTGGAC	.	81	5	50	0	.	32	32	0	0	0
FOXP2	93986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	114302186	114302186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	FOXP2-295	NM_148898	exon15	c.G1789A	p.V597I	GGAGCAGTATGGA	.	245	53	157	0	.	4	2	2	0	0
KIAA1549	57670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	138566237	138566237	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	KIAA1549-369	NM_020910	exon11	c.C4126A	p.P1376T	GCAGTGGCGCTGG	.	259	71	196	0	.	5	4	1	0	0
ANK1	286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	41547822	41547822	+	Silent	SNP	G	G	A	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	ANK1-716	NM_001142446	exon34	c.C4150T	p.L1384L	TGCGCAGAAACGA	.	136	57	146	0	.	4	2	2	0	0
ZBTB10	65986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	81412103	81412103	+	Silent	SNP	T	T	C	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	ZBTB10-522	NM_023929	exon2	c.T1347C	p.S449S	AATGAGTGAAGTT	.	67	21	83	0	.	5	3	2	0	0
WWP1	11059	bcgsc.ca	37	8	87447715	87447715	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	WWP1-659	NM_007013	exon15	c.G1636T	p.G546C	GAACGCGGCTTTA	.	116	18	171	0	.	4	4	0	0	0
JAK2	3717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	5078361	5078361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	JAK2-75307	NM_004972	exon16	c.G2048T	p.R683I	TTATCAGAGAAGA	.	71	25	66	1	.	6	4	2	0	0
DDX58	23586	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	32459420	32459420	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	DDX58-230	NM_014314	exon17	c.C2430A	p.C810X	CTTTCTGCAGAGC	.	47	4	57	0	.	9	6	3	0	0
VPS13A	23230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	79820297	79820297	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	VPS13A-161	NM_001018038	exon4	c.A256G	p.I86V	GAAGAAATTTATT	.	55	34	59	0	.	0	0	0	0	0
CTSL2	1515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	99799669	99799669	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	CTSL2-90	NM_001201575	exon4	c.A261C	p.E87D	CCTGAATTCTTCA	.	114	55	108	0	.	0	0	0	0	0
ALG6	29929	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	63868011	63868011	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	ALG6-90	NM_013339	exon4	c.254delA	p.Y85fs	.	.	37	19	41	0	.	0	0	0	0	0
TDRD1	56165	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	115947630	115947635	+	In_Frame_Del	DEL	AATTTG	AATTTG	-	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	AATTTG	AATTTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	TDRD1-90	NM_198795	exon2	c.40_45del	p.14_15del	.	.	70	20	95	0	.	0	0	0	0	0
CNTF	1270	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	58391968	58391968	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	CNTF-91	NM_000614	exon2	c.576delT	p.H192fs	.	.	68	28	73	0	.	0	0	0	0	0
RELA	5970	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	65425828	65425840	+	Frame_Shift_Del	DEL	GGAGACACGCACA	GGAGACACGCACA	-	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	GGAGACACGCACA	GGAGACACGCACA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	RELA-872	NM_021975	exon8	c.795_807del	p.265_269del	.	.	78	18	110	0	.	0	0	0	0	0
TSKU	25987	broad.mit.edu;bcgsc.ca	37	11	76507649	76507654	+	In_Frame_Del	DEL	GCTCCA	GCTCCA	-	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	GCTCCA	GCTCCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	TSKU-90	NM_015516	exon2	c.989_994del	p.330_332del	GGCCTGGCTCCAG	.	12	6	26	0	.	0	0	0	0	0
BCL2L14	79370	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	12247627	12247628	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	BCL2L14-227	NM_138723	exon5	c.708_709del	p.236_237del	.	.	276	71	203	0	.	0	0	0	0	0
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	34130027	34130027	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	RYR3-520	NM_001036	exon89	c.11846delA	p.E3949fs	.	.	83	45	85	0	.	0	0	0	0	0
KRTAP19-7	337974	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	31933587	31933587	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	KRTAP19-7-68	NM_181614	exon1	c.22delT	p.Y8fs	.	.	220	104	198	0	.	0	0	0	0	0
EP300	2033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	41558757	41558757	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	EP300-2011	NM_001429	exon21	c.3702delA	p.R1234fs	.	.	132	51	134	0	.	0	0	0	0	0
RAF1	5894	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	12653543	12653543	+	Nonsense_Mutation	DEL	T	T	-	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	RAF1-1404	NM_002880	exon3	c.226delA	p.M76X	.	.	118	55	126	0	.	0	0	0	0	0
LRPAP1	4043	broad.mit.edu;bcgsc.ca	37	4	3534063	3534077	+	In_Frame_Del	DEL	CAGGGCCCGAGGAAG	CAGGGCCCGAGGAAG	-	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	CAGGGCCCGAGGAAG	CAGGGCCCGAGGAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	LRPAP1-92	NM_002337	exon1	c.63_77del	p.21_26del	GCGGGCCAGGGCC	.	31	7	43	0	.	0	0	0	0	0
PCDHB10	56126	bcgsc.ca	37	5	140573408	140573411	+	Frame_Shift_Del	DEL	CACC	CACC	-	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	CACC	CACC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	PCDHB10-92	NM_018930	exon1	c.1283_1286del	p.428_429del	TGGGGACACCCAG	.	146	33	193	1	.	0	0	0	0	0
PCDHB10	56126	hgsc.bcm.edu	37	5	140573409	140573413	+	Frame_Shift_Del	DEL	ACCCA	ACCCA	-	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	ACCCA	ACCCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	PCDHB10-92	NM_018930	exon1	c.1284_1288del	p.428_430del	.	.	145	23	188	0	.	0	0	0	0	0
MDN1	23195	broad.mit.edu	37	6	90466095	90466095	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	MDN1-100	NM_014611	exon20	c.2717delA	p.Y906fs	TCTACATAAAGTT	.	39	8	43	0	.	0	0	0	0	0
TRAF3IP2	10758	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	111912891	111912891	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	TRAF3IP2-228	NM_147686	exon2	c.399delT	p.F133fs	.	.	86	32	82	0	.	0	0	0	0	0
DHTKD1	55526	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	12162862	12162863	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	DHTKD1-515	NM_018706	exon17	c.2735_2736insT	p.D912fs	.	.	90	37	94	0	.	0	0	0	0	0
EML5	161436	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	89171882	89171883	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	EML5-93	NM_183387	exon12	c.1876_1877insA	p.V626fs	.	.	41	18	32	0	.	0	0	0	0	0
CSE1L	1434	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	47705894	47705895	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	CSE1L-290	NM_001316	exon18	c.1932_1933insTT	p.L644fs	.	.	64	15	73	0	.	0	0	0	0	0
WWP1	11059	broad.mit.edu;bcgsc.ca	37	8	87447714	87447715	+	Frame_Shift_Ins	INS	-	-	AATTTTT	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	WWP1-659	NM_007013	exon15	c.1635_1636insAATTTTT	p.R545fs	TGAACGCGGCTTT	.	120	18	172	0	.	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179598544	179598545	+	Missense_Mutation	DNP	AC	AC	CA	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	TTN-636	NM_001267550	exon53	c.G15571T	p.V3947W	CTCTCACAGCAGC	.	151.0	65.0	156.0	0.0	.	0	0	0	0	0
MET	4233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	116415114	116415115	+	Missense_Mutation	DNP	GT	GT	AG	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	MET-5874	NM_000245	exon15	c.T3209G	p.V1088R	ATGTAGTGATTGG	.	202.0	125.0	132.0	0.0	.	0	0	0	0	0
AASS	10157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	121717970	121717971	+	Missense_Mutation	DNP	CA	CA	AG	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	AASS-92	NM_005763	exon23	c.T2583C	p.G862W	GTCCCCATAAGCC	.	222.0	21.0	145.0	0.0	.	0	0	0	0	0
NFASC	23114	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	204948503	204948504	+	Missense_Mutation	DNP	GT	GT	AG	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	NFASC-139	NM_001160331	exon17	c.T2026G	p.F665V	GTCCAGTTTGAAG	.	327	119	289	3	.	0	0	0	0	0
