Extract Name	Hybridization Name	Data File	Comment [TCGA Archive Name]	Comment [TCGA Data Level]	Comment [TCGA Include for Analysis]	Protocol REF	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
TCGA-44-2656-01B-06D-A273-01	CUTCH_p_TCGAb_355_37_52_NSP_GenomeWideSNP_6_H09_1376730	CUTCH_p_TCGAb_355_37_52_NSP_GenomeWideSNP_6_H09_1376730.hg19.seg.txt	broad.mit.edu_LUAD.Genome_Wide_SNP_6.Level_3.37.2012.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg_2016012800	LUAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LUAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.Level_3.2016012800.0.0	yes
TCGA-44-2662-01B-02D-A273-01	UNDID_p_TCGA_353_354_355_37_NSP_GenomeWideSNP_6_H02_1376964	UNDID_p_TCGA_353_354_355_37_NSP_GenomeWideSNP_6_H02_1376964.hg19.seg.txt	broad.mit.edu_LUAD.Genome_Wide_SNP_6.Level_3.37.2012.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg_2016012800	LUAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LUAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.Level_3.2016012800.0.0	yes
TCGA-44-3917-01B-02D-A273-01	CUTCH_p_TCGAb_355_37_52_NSP_GenomeWideSNP_6_H02_1376780	CUTCH_p_TCGAb_355_37_52_NSP_GenomeWideSNP_6_H02_1376780.hg19.seg.txt	broad.mit.edu_LUAD.Genome_Wide_SNP_6.Level_3.52.2012.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg_2016012800	LUAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LUAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.Level_3.2016012800.0.0	yes
TCGA-44-6775-01C-02D-A273-01	TSUBA_p_TCGA352_119_144_221_NSP_GenomeWideSNP_6_H04_1377116	TSUBA_p_TCGA352_119_144_221_NSP_GenomeWideSNP_6_H04_1377116.hg19.seg.txt	broad.mit.edu_LUAD.Genome_Wide_SNP_6.Level_3.144.2012.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg_2016012800	LUAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LUAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.Level_3.2016012800.0.0	yes
TCGA-44-2666-01B-02D-A273-01	UNDID_p_TCGA_353_354_355_37_NSP_GenomeWideSNP_6_H07_1376914	UNDID_p_TCGA_353_354_355_37_NSP_GenomeWideSNP_6_H07_1376914.hg19.seg.txt	broad.mit.edu_LUAD.Genome_Wide_SNP_6.Level_3.37.2012.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg_2016012800	LUAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LUAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.Level_3.2016012800.0.0	yes
TCGA-44-2668-01B-02D-A273-01	UNDID_p_TCGA_353_354_355_37_NSP_GenomeWideSNP_6_H09_1376982	UNDID_p_TCGA_353_354_355_37_NSP_GenomeWideSNP_6_H09_1376982.hg19.seg.txt	broad.mit.edu_LUAD.Genome_Wide_SNP_6.Level_3.37.2012.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg_2016012800	LUAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LUAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.Level_3.2016012800.0.0	yes
TCGA-44-3918-01B-02D-A273-01	CUTCH_p_TCGAb_355_37_52_NSP_GenomeWideSNP_6_H04_1376696	CUTCH_p_TCGAb_355_37_52_NSP_GenomeWideSNP_6_H04_1376696.hg19.seg.txt	broad.mit.edu_LUAD.Genome_Wide_SNP_6.Level_3.52.2012.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg_2016012800	LUAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LUAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.Level_3.2016012800.0.0	yes
TCGA-44-6146-01B-04D-A273-01	TSUBA_p_TCGA352_119_144_221_NSP_GenomeWideSNP_6_H07_1377212	TSUBA_p_TCGA352_119_144_221_NSP_GenomeWideSNP_6_H07_1377212.hg19.seg.txt	broad.mit.edu_LUAD.Genome_Wide_SNP_6.Level_3.119.2012.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg_2016012800	LUAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LUAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.Level_3.2016012800.0.0	yes
TCGA-44-4112-01B-06D-A273-01	CUTCH_p_TCGAb_355_37_52_NSP_GenomeWideSNP_6_H08_1376716	CUTCH_p_TCGAb_355_37_52_NSP_GenomeWideSNP_6_H08_1376716.hg19.seg.txt	broad.mit.edu_LUAD.Genome_Wide_SNP_6.Level_3.52.2012.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg_2016012800	LUAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LUAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.Level_3.2016012800.0.0	yes
TCGA-44-6147-01B-06D-A273-01	TSUBA_p_TCGA352_119_144_221_NSP_GenomeWideSNP_6_H09_1377090	TSUBA_p_TCGA352_119_144_221_NSP_GenomeWideSNP_6_H09_1377090.hg19.seg.txt	broad.mit.edu_LUAD.Genome_Wide_SNP_6.Level_3.119.2012.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg_2016012800	LUAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LUAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.Level_3.2016012800.0.0	yes
TCGA-44-2665-01B-06D-A273-01	UNDID_p_TCGA_353_354_355_37_NSP_GenomeWideSNP_6_H03_1376994	UNDID_p_TCGA_353_354_355_37_NSP_GenomeWideSNP_6_H03_1376994.hg19.seg.txt	broad.mit.edu_LUAD.Genome_Wide_SNP_6.Level_3.37.2012.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg_2016012800	LUAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LUAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.Level_3.2016012800.0.0	yes
TCGA-44-5645-01B-04D-A273-01	TOPOS_p_TCGAb_352_353_84_86_NSP_GenomeWideSNP_6_H06_1376578	TOPOS_p_TCGAb_352_353_84_86_NSP_GenomeWideSNP_6_H06_1376578.hg19.seg.txt	broad.mit.edu_LUAD.Genome_Wide_SNP_6.Level_3.84.2012.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg_2016012800	LUAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LUAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.Level_3.2016012800.0.0	yes
