Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
mirfile	LUAD-FFPE.mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data.data.txt	gdac.broadinstitute.org_LUAD-FFPE.Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data.Level_3.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10250:21	miRseq_Mature_Preprocess_2016012800	LUAD-FFPE.miRseq_mature_RPM.txt	miRseq_mature	Level_3	txt	gdac.broadinstitute.org_LUAD-FFPE.miRseq_Mature_Preprocess.Level_3.2016012800.0.0	yes
mirfile	LUAD-FFPE.mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data.data.txt	gdac.broadinstitute.org_LUAD-FFPE.Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data.Level_3.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10250:21	miRseq_Mature_Preprocess_2016012800	LUAD-FFPEreport.txt	miRseq_mature	Level_3	txt	gdac.broadinstitute.org_LUAD-FFPE.miRseq_Mature_Preprocess.Level_3.2016012800.0.0	yes
mirfile	LUAD-FFPE.mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data.data.txt	gdac.broadinstitute.org_LUAD-FFPE.Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data.Level_3.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10250:21	miRseq_Mature_Preprocess_2016012800	stdout.txt	miRseq_mature	Level_3	txt	gdac.broadinstitute.org_LUAD-FFPE.miRseq_Mature_Preprocess.Level_3.2016012800.0.0	yes
mirfile	LUAD-FFPE.mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data.data.txt	gdac.broadinstitute.org_LUAD-FFPE.Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data.Level_3.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10250:21	miRseq_Mature_Preprocess_2016012800	stderr.txt	miRseq_mature	Level_3	txt	gdac.broadinstitute.org_LUAD-FFPE.miRseq_Mature_Preprocess.Level_3.2016012800.0.0	yes
mirmap16	mature.16.fa.gz	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10250:21	miRseq_Mature_Preprocess_2016012800	LUAD-FFPE.miRseq_mature_RPM.txt	miRseq_mature	Level_3	txt	gdac.broadinstitute.org_LUAD-FFPE.miRseq_Mature_Preprocess.Level_3.2016012800.0.0	yes
mirmap16	mature.16.fa.gz	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10250:21	miRseq_Mature_Preprocess_2016012800	LUAD-FFPEreport.txt	miRseq_mature	Level_3	txt	gdac.broadinstitute.org_LUAD-FFPE.miRseq_Mature_Preprocess.Level_3.2016012800.0.0	yes
mirmap16	mature.16.fa.gz	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10250:21	miRseq_Mature_Preprocess_2016012800	stdout.txt	miRseq_mature	Level_3	txt	gdac.broadinstitute.org_LUAD-FFPE.miRseq_Mature_Preprocess.Level_3.2016012800.0.0	yes
mirmap16	mature.16.fa.gz	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10250:21	miRseq_Mature_Preprocess_2016012800	stderr.txt	miRseq_mature	Level_3	txt	gdac.broadinstitute.org_LUAD-FFPE.miRseq_Mature_Preprocess.Level_3.2016012800.0.0	yes
mirmapcurrent	mature.21.fa.gz	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10250:21	miRseq_Mature_Preprocess_2016012800	LUAD-FFPE.miRseq_mature_RPM.txt	miRseq_mature	Level_3	txt	gdac.broadinstitute.org_LUAD-FFPE.miRseq_Mature_Preprocess.Level_3.2016012800.0.0	yes
mirmapcurrent	mature.21.fa.gz	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10250:21	miRseq_Mature_Preprocess_2016012800	LUAD-FFPEreport.txt	miRseq_mature	Level_3	txt	gdac.broadinstitute.org_LUAD-FFPE.miRseq_Mature_Preprocess.Level_3.2016012800.0.0	yes
mirmapcurrent	mature.21.fa.gz	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10250:21	miRseq_Mature_Preprocess_2016012800	stdout.txt	miRseq_mature	Level_3	txt	gdac.broadinstitute.org_LUAD-FFPE.miRseq_Mature_Preprocess.Level_3.2016012800.0.0	yes
mirmapcurrent	mature.21.fa.gz	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10250:21	miRseq_Mature_Preprocess_2016012800	stderr.txt	miRseq_mature	Level_3	txt	gdac.broadinstitute.org_LUAD-FFPE.miRseq_Mature_Preprocess.Level_3.2016012800.0.0	yes
