Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
AGAP2-AS1	0	genome.wustl.edu	37	12	58121452	58121452	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	12	58121452	58121452	C	T	SNP	AGAP2-AS1	ENST00000542466	human	ensembl	74_37	+1	putative	missense	c.677	p.S226F	0.004	NULL	NULL	-	no_errors	AGAP2-AS1	HGNC	ENSG00000255737	tier1	-	-	50	0	0.00	305	67	17.96	25	0	0.00	151	20	11.70
UNC80	0	genome.wustl.edu	37	2	210642248	210642248	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	2	210642248	210642248	G	A	SNP	UNC80	ENST00000439458	human	ensembl	74_37	+1	known	missense	c.565	p.V189M	1.000	NULL	NULL	-	no_errors	UNC80	HGNC	ENSG00000144406	tier1	-	-	46	0	0.00	21	11	34.38	116	0	0.00	47	48	50.53
FZD6	0	genome.wustl.edu	37	8	104336784	104336784	+	Silent	SNP	A	A	G			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	8	104336784	104336784	A	G	SNP	FZD6	ENST00000358755	human	ensembl	74_37	+1	known	silent	c.450	p.T150	0.991	NULL	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD6	HGNC	ENSG00000164930	tier1	-	-	43	0	0.00	75	23	23.47	51	0	0.00	46	12	20.69
IFNG	0	genome.wustl.edu	37	12	68551748	68551748	+	Missense_Mutation	SNP	A	A	T			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	12	68551748	68551748	A	T	SNP	IFNG	ENST00000229135	human	ensembl	74_37	-1	known	missense	c.311	p.F104Y	0.086	pfam_Interferon_gamma,superfamily_4_helix_cytokine-like_core,pirsf_Interferon_gamma	pfam_Interferon_gamma,superfamily_4_helix_cytokine-like_core,pirsf_Interferon_gamma	-	no_errors	IFNG	HGNC	ENSG00000111537	tier1	-	-	42	0	0.00	46	24	34.29	43	0	0.00	53	39	42.39
ANTXR2	0	genome.wustl.edu	37	4	80828146	80828146	+	R	SNP	A	A	C			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	4	80828146	80828146	A	C	SNP	ANTXR2	ENST00000482406	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.407	-	-	-	no_errors	ANTXR2	HGNC	ENSG00000163297	tier1	-	-	11	0	0.00	15	11	42.31	55	0	0.00	45	45	50.00
FHOD3	0	genome.wustl.edu	37	18	34297864	34297864	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	18	34297864	34297864	G	T	SNP	FHOD3	ENST00000257209	human	ensembl	74_37	+1	known	missense	c.2078	p.R693L	1.000	NULL	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD3	HGNC	ENSG00000134775	tier1	-	-	26	0	0.00	49	38	43.68	115	0	0.00	58	43	42.57
MYH4	0	genome.wustl.edu	37	17	10367818	10367818	+	Missense_Mutation	SNP	T	T	C			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	17	10367818	10367818	T	C	SNP	MYH4	ENST00000255381	human	ensembl	74_37	-1	known	missense	c.619	p.K207E	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_tR-bd_arm,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH4	HGNC	ENSG00000264424	tier1	-	-	28	0	0.00	37	12	24.49	19	0	0.00	26	12	31.58
SLC22A15	0	genome.wustl.edu	37	1	116574007	116574007	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	1	116574007	116574007	G	A	SNP	SLC22A15	ENST00000369503	human	ensembl	74_37	+1	known	missense	c.749	p.R250H	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A15	HGNC	ENSG00000163393	tier1	-	-	21	0	0.00	25	12	32.43	41	0	0.00	40	36	47.37
POGZ	0	genome.wustl.edu	37	1	151384810	151384810	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	1	151384810	151384810	C	T	SNP	POGZ	ENST00000271715	human	ensembl	74_37	-1	known	missense	c.1741	p.D581N	1.000	smart_Znf_C2H2-like	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_D-bd_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_HTH_CenpB_D-bd_dom,pfscan_Znf_C2H2	-	no_errors	POGZ	HGNC	ENSG00000143442	tier1	-	-	19	0	0.00	37	23	38.33	70	0	0.00	93	30	24.39
OR10T2	0	genome.wustl.edu	37	1	158368481	158368481	+	Missense_Mutation	SNP	T	T	C			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	1	158368481	158368481	T	C	SNP	OR10T2	ENST00000334438	human	ensembl	74_37	-1	known	missense	c.776	p.Y259C	0.989	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10T2	HGNC	ENSG00000186306	tier1	rs139047952	-	19	0	0.00	30	22	42.31	58	0	0.00	45	39	45.88
TTC29	0	genome.wustl.edu	37	4	147628647	147628647	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	4	147628647	147628647	C	T	SNP	TTC29	ENST00000398886	human	ensembl	74_37	-1	known	missense	c.1465	p.E489K	0.128	NULL	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC29	HGNC	ENSG00000137473	tier1	-	-	31	0	0.00	67	25	27.17	27	0	0.00	46	42	47.73
MYO16	0	genome.wustl.edu	37	13	109438081	109438081	+	Silent	SNP	G	G	A			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	13	109438081	109438081	G	A	SNP	MYO16	ENST00000356711	human	ensembl	74_37	+1	known	silent	c.540	p.L180	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515	tier1	-	-	13	0	0.00	26	21	44.68	75	0	0.00	60	30	33.33
GTF2H1	0	genome.wustl.edu	37	11	18369142	18369142	+	Missense_Mutation	SNP	G	G	C			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	11	18369142	18369142	G	C	SNP	GTF2H1	ENST00000265963	human	ensembl	74_37	+1	known	missense	c.845	p.G282A	1.000	NULL	pfam_BSD,pfam_TFIIH_BTF_p62_N,smart_BSD,pfscan_BSD	-	no_errors	GTF2H1	HGNC	ENSG00000110768	tier1	-	-	26	0	0.00	24	6	20.00	21	0	0.00	48	7	12.73
GPR98	0	genome.wustl.edu	37	5	90106134	90106134	+	Silent	SNP	T	T	C			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	5	90106134	90106134	T	C	SNP	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	silent	c.15057	p.D5019	0.010	pfam_Calx_beta,smart_Calx_beta	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	tier1	-	-	39	0	0.00	46	18	28.12	50	0	0.00	52	35	40.23
INPP5F	0	genome.wustl.edu	37	10	121565903	121565903	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	10	121565903	121565903	G	A	SNP	INPP5F	ENST00000361976	human	ensembl	74_37	+1	known	missense	c.1351	p.E451K	1.000	pfscan_Syja_N	pfam_Syja_N,pfam_Inositol_phosphatase,pfscan_Syja_N	-	no_errors	INPP5F	HGNC	ENSG00000198825	tier1	-	-	30	0	0.00	50	10	16.67	110	0	0.00	110	22	16.67
AGAP2	0	genome.wustl.edu	37	12	58121737	58121737	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	12	58121737	58121737	C	T	SNP	AGAP2	ENST00000547588	human	ensembl	74_37	-1	known	missense	c.2749	p.E917K	1.000	NULL	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP2	HGNC	ENSG00000135439	tier1	-	-	39	0	0.00	194	46	19.17	104	0	0.00	496	100	16.75
HSD17B1	0	genome.wustl.edu	37	17	40705302	40705302	+	Silent	SNP	C	C	T			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	17	40705302	40705302	C	T	SNP	HSD17B1	ENST00000585807	human	ensembl	74_37	+1	known	silent	c.258	p.D86	0.997	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pirsf_17beta_DH,prints_Glc/ribitol_DH,prints_DHB_DH,prints_DH_sc/Rdtase_SDR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pirsf_17beta_DH,prints_Glc/ribitol_DH,prints_DHB_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	HSD17B1	HGNC	ENSG00000108786	tier1	-	-	112	1	0.88	51	40	43.96	34	0	0.00	14	6	30.00
EARS2	0	genome.wustl.edu	37	16	23540873	23540873	+	Missense_Mutation	SNP	C	C	A			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	16	23540873	23540873	C	A	SNP	EARS2	ENST00000449606	human	ensembl	74_37	-1	known	missense	c.1302	p.Q434H	1.000	superfamily_aa-tR-synth_I_codon-bd,tigrfam_Glu-tR-ligase_bac/mito	pfam_Glu/Gln-tR-synth_Ib_cat-dom,superfamily_aa-tR-synth_I_codon-bd,prints_Glu/Gln-tR-synth,tigrfam_Glu-tR-ligase_bac/mito	-	no_errors	EARS2	HGNC	ENSG00000103356	tier1	-	-	29	0	0.00	42	11	20.75	44	0	0.00	53	9	14.52
ATP11B	0	genome.wustl.edu	37	3	182583358	182583358	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	3	182583358	182583358	G	A	SNP	ATP11B	ENST00000323116	human	ensembl	74_37	+1	known	missense	c.1315	p.E439K	1.000	superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP11B	HGNC	ENSG00000058063	tier1	-	-	20	0	0.00	77	15	16.30	40	0	0.00	66	22	24.72
DMXL1	0	genome.wustl.edu	37	5	118539113	118539113	+	Silent	SNP	G	G	A			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	5	118539113	118539113	G	A	SNP	DMXL1	ENST00000539542	human	ensembl	74_37	+1	known	silent	c.7845	p.K2615	1.000	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869	tier1	-	-	29	0	0.00	121	27	18.24	50	0	0.00	78	14	15.22
MYO5C	0	genome.wustl.edu	37	15	52497276	52497276	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	15	52497276	52497276	G	A	SNP	MYO5C	ENST00000261839	human	ensembl	74_37	-1	known	missense	c.4606	p.R1536C	1.000	pfscan_Dilute	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5C	HGNC	ENSG00000128833	tier1	-	-	17	0	0.00	23	16	41.03	25	0	0.00	24	15	38.46
C14orf37	0	genome.wustl.edu	37	14	58604835	58604835	+	Missense_Mutation	SNP	C	C	G			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	14	58604835	58604835	C	G	SNP	C14orf37	ENST00000267485	human	ensembl	74_37	-1	known	missense	c.1242	p.L414F	0.002	NULL	NULL	-	no_errors	C14orf37	HGNC	ENSG00000139971	tier1	-	-	44	0	0.00	49	12	19.67	119	1	0.83	74	13	14.77
CADM4	0	genome.wustl.edu	37	19	44130154	44130154	+	Splice_Site	SNP	C	C	G			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	19	44130154	44130154	C	G	SNP	CADM4	ENST00000222374	human	ensembl	74_37	-1	known	splice_site	c.665-1	e6-1	1.000	-	-	-	no_errors	CADM4	HGNC	ENSG00000105767	tier1	-	-	43	0	0.00	42	12	22.22	99	1	1.00	51	14	21.54
SSPO	0	genome.wustl.edu	37	7	149493130	149493130	+	R	SNP	G	G	A			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	7	149493130	149493130	G	A	SNP	SSPO	ENST00000262089	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558	tier1	-	-	30	0	0.00	36	16	30.77	69	0	0.00	41	22	34.92
FKBP10	0	genome.wustl.edu	37	17	39973444	39973444	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	17	39973444	39973444	G	T	SNP	FKBP10	ENST00000321562	human	ensembl	74_37	+1	known	missense	c.380	p.S127I	1.000	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	pfam_PPIase_FKBP_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP10	HGNC	ENSG00000141756	tier1	-	-	16	0	0.00	8	7	46.67	21	0	0.00	13	5	27.78
CILP	0	genome.wustl.edu	37	15	65499236	65499236	+	Missense_Mutation	SNP	C	C	A			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	15	65499236	65499236	C	A	SNP	CILP	ENST00000261883	human	ensembl	74_37	-1	known	missense	c.308	p.G103V	0.001	NULL	pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_CarboxyPept-like_regulatory,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	CILP	HGNC	ENSG00000138615	tier1	-	-	20	0	0.00	15	7	31.82	37	0	0.00	18	10	35.71
TTN	0	genome.wustl.edu	37	2	179429737	179429737	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	2	179429737	179429737	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.73418	p.T24473M	0.209	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657	tier1	-	-	29	0	0.00	39	19	32.76	78	0	0.00	92	37	28.46
LGR5	0	genome.wustl.edu	37	12	71955560	71955560	+	Splice_Site	SNP	G	G	C			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	12	71955560	71955560	G	C	SNP	LGR5	ENST00000266674	human	ensembl	74_37	+1	known	splice_site	c.786-1	e8-1	1.000	-	-	-	no_errors	LGR5	HGNC	ENSG00000139292	tier1	-	-	33	0	0.00	117	384	76.49	29	0	0.00	101	321	75.89
ATRX	0	genome.wustl.edu	37	X	76890194	76890194	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	X	76890194	76890194	C	T	SNP	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	missense	c.4700	p.G1567D	1.000	pfam_SNF2_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	tier1	-	-	15	0	0.00	14	34	70.83	47	0	0.00	22	43	66.15
UBTF	0	genome.wustl.edu	37	17	42290278	42290278	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	17	42290278	42290278	G	A	SNP	UBTF	ENST00000302904	human	ensembl	74_37	-1	known	missense	c.569	p.A190V	1.000	superfamily_ARM-type_fold	pfam_HMG_box_dom,superfamily_HMG_box_dom,superfamily_ARM-type_fold,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	UBTF	HGNC	ENSG00000108312	tier1	-	-	59	0	0.00	35	26	42.62	208	0	0.00	58	34	36.96
MPZL1	0	genome.wustl.edu	37	1	167691169	167691169	+	R	SNP	G	G	C			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	1	167691169	167691169	G	C	SNP	MPZL1	ENST00000487858	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	MPZL1	HGNC	ENSG00000197965	tier1	-	-	33	0	0.00	13	10	43.48	45	0	0.00	16	9	36.00
TMPRSS3	0	genome.wustl.edu	37	21	43815480	43815480	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	21	43815480	43815480	C	T	SNP	TMPRSS3	ENST00000380399	human	ensembl	74_37	-1	known	missense	c.299	p.R100Q	0.958	NULL	pfam_Peptidase_S1,pfam_SRCR,pfam_Peptidase_S1A_nudel,pfam_LDrepeatLR_classA_rpt,superfamily_Trypsin-like_Pept_dom,superfamily_Srcr_rcpt-rel,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1,pfscan_LDrepeatLR_classA_rpt,pfscan_SRCR,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	TMPRSS3	HGNC	ENSG00000160183	tier1	-	-	32	0	0.00	47	14	22.95	90	0	0.00	64	25	28.09
PHTF1	0	genome.wustl.edu	37	1	114281367	114281367	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	1	114281367	114281367	C	T	SNP	PHTF1	ENST00000369604	human	ensembl	74_37	-1	known	missense	c.157	p.V53I	1.000	pfam_TF_homeodomain_male	pfam_TF_homeodomain_male	-	no_errors	PHTF1	HGNC	ENSG00000116793	tier1	-	-	61	0	0.00	84	53	38.69	67	0	0.00	73	43	37.07
ENSG00000167765	0	genome.wustl.edu	37	19	52097498	52097498	+	Missense_Mutation	SNP	T	T	G			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	19	52097498	52097498	T	G	SNP	ENSG00000167765	ENST00000301439	human	ensembl	74_37	-1	known	missense	c.77	p.N26T	0.002	NULL	NULL	-	no_errors	AC018755.1	Clone_based_ensembl_gene	ENSG00000167765	tier1	-	-	53	0	0.00	16	16	50.00	131	0	0.00	42	26	38.24
WDR96	0	genome.wustl.edu	37	10	105944776	105944776	+	Nonsense_Mutation	SNP	C	C	T			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	10	105944776	105944776	C	T	SNP	WDR96	ENST00000357060	human	ensembl	74_37	-1	known	nonsense	c.2139	p.W713*	1.000	superfamily_WD40_repeat_dom	superfamily_WD40_repeat_dom,superfamily_Quino_amine_DH_bsu	-	no_errors	WDR96	HGNC	ENSG00000197748	tier1	-	-	34	0	0.00	15	7	31.82	83	0	0.00	75	17	18.48
EMX2	0	genome.wustl.edu	37	10	119307608	119307608	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	10	119307608	119307608	G	T	SNP	EMX2	ENST00000553456	human	ensembl	74_37	+1	known	missense	c.624	p.K208N	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_HTH_motif	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_HTH_motif	-	no_errors	EMX2	HGNC	ENSG00000170370	tier1	-	-	34	0	0.00	30	11	26.83	135	0	0.00	55	11	16.67
NR2C1	0	genome.wustl.edu	37	12	95434360	95434360	+	Missense_Mutation	SNP	G	G	C			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	12	95434360	95434360	G	C	SNP	NR2C1	ENST00000333003	human	ensembl	74_37	-1	known	missense	c.1145	p.S382C	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	-	no_errors	NR2C1	HGNC	ENSG00000120798	tier1	-	-	59	0	0.00	112	55	32.93	76	0	0.00	121	56	31.64
CD58	0	genome.wustl.edu	37	1	117087035	117087035	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	1	117087035	117087035	C	T	SNP	CD58	ENST00000369489	human	ensembl	74_37	-1	known	missense	c.262	p.G88S	0.056	NULL	NULL	-	no_errors	CD58	HGNC	ENSG00000116815	tier1	-	-	31	0	0.00	50	23	31.51	42	0	0.00	70	17	19.54
TMEM40	0	genome.wustl.edu	37	3	12778114	12778114	+	Silent	SNP	G	G	A			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	3	12778114	12778114	G	A	SNP	TMEM40	ENST00000431022	human	ensembl	74_37	-1	known	silent	c.630	p.F210	0.899	NULL	NULL	-	no_errors	TMEM40	HGNC	ENSG00000088726	tier1	rs199796616	GMAF=0.0005	55	0	0.00	55	27	32.93	50	0	0.00	40	33	45.21
TTLL5	0	genome.wustl.edu	37	14	76330059	76330059	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	14	76330059	76330059	G	A	SNP	TTLL5	ENST00000298832	human	ensembl	74_37	+1	known	missense	c.3376	p.V1126M	0.839	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL5	HGNC	ENSG00000119685	tier1	-	-	33	0	0.00	32	20	38.46	78	0	0.00	50	13	20.63
PTCH1	0	genome.wustl.edu	37	9	98239127	98239127	+	Missense_Mutation	SNP	G	G	C			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	9	98239127	98239127	G	C	SNP	PTCH1	ENST00000331920	human	ensembl	74_37	-1	known	missense	c.1516	p.L506V	1.000	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC	ENSG00000185920	tier1	-	-	21	0	0.00	50	27	35.06	99	0	0.00	94	34	26.15
DYNC1LI2	0	genome.wustl.edu	37	16	66785214	66785214	+	Missense_Mutation	SNP	C	C	A			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	16	66785214	66785214	C	A	SNP	DYNC1LI2	ENST00000258198	human	ensembl	74_37	-1	known	missense	c.143	p.R48M	1.000	pfam_Dynein_light_int_chain	pfam_Dynein_light_int_chain,superfamily_P-loop_NTPase	-	no_errors	DYNC1LI2	HGNC	ENSG00000135720	tier1	-	-	107	0	0.00	100	23	18.70	70	0	0.00	32	11	25.58
NEUROG1	0	genome.wustl.edu	37	5	134871035	134871035	+	Missense_Mutation	SNP	G	G	C			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	5	134871035	134871035	G	C	SNP	NEUROG1	ENST00000314744	human	ensembl	74_37	-1	known	missense	c.346	p.R116G	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	NEUROG1	HGNC	ENSG00000181965	tier1	-	-	70	0	0.00	29	28	49.12	40	0	0.00	11	14	56.00
FBLN2	0	genome.wustl.edu	37	3	13612954	13612954	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	3	13612954	13612954	C	T	SNP	FBLN2	ENST00000404922	human	ensembl	74_37	+1	known	missense	c.1099	p.L367F	0.000	NULL	pfam_EGF-like_Ca-bd_dom,pfam_Anaphylatoxin/fibulin,superfamily_Anaphylatoxin_comp_syst,smart_EG-like_dom,smart_Anaphylatoxin/fibulin,smart_EGF-like_Ca-bd_dom,pfscan_Anaphylatoxin/fibulin,pfscan_EG-like_dom	-	no_errors	FBLN2	HGNC	ENSG00000163520	tier1	-	-	53	0	0.00	25	15	37.50	75	0	0.00	31	27	46.55
ENSG00000231345	0	genome.wustl.edu	37	10	52419299	52419299	+	R	SNP	C	C	T			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	10	52419299	52419299	C	T	SNP	ENSG00000231345	ENST00000449695	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.814	-	-	-	no_errors	RP11-564C4.6	Clone_based_vega_gene	ENSG00000231345	tier1	-	-	18	0	0.00	7	7	50.00	19	0	0.00	6	6	50.00
KIAA1161	0	genome.wustl.edu	37	9	34371506	34371506	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	9	34371506	34371506	G	A	SNP	KIAA1161	ENST00000297625	human	ensembl	74_37	-1	known	missense	c.1334	p.P445L	0.994	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	-	no_errors	KIAA1161	HGNC	ENSG00000164976	tier1	-	-	28	0	0.00	6	10	62.50	6	0	0.00	5	9	64.29
PRAMEF2	0	genome.wustl.edu	37	1	12919081	12919081	+	Missense_Mutation	SNP	C	C	A			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	1	12919081	12919081	C	A	SNP	PRAMEF2	ENST00000240189	human	ensembl	74_37	+1	known	missense	c.217	p.L73I	0.084	NULL	NULL	-	no_errors	PRAMEF2	HGNC	ENSG00000120952	tier1	-	-	54	0	0.00	64	30	31.91	11	0	0.00	7	4	33.33
STAG3L1	0	genome.wustl.edu	37	7	74988500	74988500	+	R	SNP	C	C	T			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	7	74988500	74988500	C	T	SNP	STAG3L1	ENST00000402225	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	STAG3L1	HGNC	ENSG00000205583	tier1	-	-	35	0	0.00	18	9	33.33	8	0	0.00	1	3	75.00
UBR2	0	genome.wustl.edu	37	6	42583771	42583771	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	6	42583771	42583771	G	A	SNP	UBR2	ENST00000372899	human	ensembl	74_37	+1	known	missense	c.1125	p.M375I	1.000	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR2	HGNC	ENSG00000024048	tier1	-	-	43	0	0.00	102	9	8.11	32	0	0.00	75	8	9.64
UBR2	0	genome.wustl.edu	37	6	42583818	42583818	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	6	42583818	42583818	G	A	SNP	UBR2	ENST00000372899	human	ensembl	74_37	+1	known	missense	c.1172	p.R391Q	1.000	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR2	HGNC	ENSG00000024048	tier1	-	-	40	0	0.00	80	12	13.04	30	0	0.00	69	4	5.48
UBR2	0	genome.wustl.edu	37	6	42583801	42583801	+	Silent	SNP	G	G	A			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	6	42583801	42583801	G	A	SNP	UBR2	ENST00000372899	human	ensembl	74_37	+1	known	silent	c.1155	p.K385	1.000	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR2	HGNC	ENSG00000024048	tier1	-	-	44	0	0.00	91	11	10.78	29	0	0.00	71	6	7.79
CBFA2T3	0	genome.wustl.edu	37	16	88952543	88952543	+	Frame_Shift_Del	DEL	A	A	-			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	16	88952543	88952543	A	-	DEL	CBFA2T3	ENST00000268679	human	ensembl	74_37	-1	known	frame_shift_del	c.719	p.L240fs	1.000	pfam_TAFH_NHR1,smart_TAFH_NHR1,pfscan_TAFH_NHR1	pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTG16	-	no_errors	CBFA2T3	HGNC	ENSG00000129993	tier1			86	0	0.00	17	2	10.53	35	0	0.00	7	0	0.00
CREBBP	0	genome.wustl.edu	37	16	3779184	3779184	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	16	3779184	3779184	G	A	SNP	CREBBP	ENST00000262367	human	ensembl	74_37	-1	known	missense	c.5864	p.A1955V	0.998	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339	tier1	-	-	29	0	0.00	9	3	25.00	6	0	0.00	6	0	0.00
DSCR3	0	genome.wustl.edu	37	21	38639762	38639763	+	R	INS	-	-	C			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	21	38639762	38639763	-	C	INS	DSCR3	ENST00000399000	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.001	-	-	-	no_errors	DSCR3	HGNC	ENSG00000157538	tier1			17	0	0.00	6	3	33.33	5	0	0.00	3	0	0.00
ATP13A4-AS1	0	genome.wustl.edu	37	3	193272443	193272450	+	R	DEL	GTGTGTGT	GTGTGTGT	-			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	GTGTGTGT	GTGTGTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	3	193272443	193272450	GTGTGTGT	-	DEL	ATP13A4-AS1	ENST00000426459	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004:0.003:0.002:0.001:0.019:0.004:0.002:0.000	-	-	-	no_errors	ATP13A4-AS1	HGNC	ENSG00000225473	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
ENSG00000267075	0	genome.wustl.edu	37	17	20450947	20450947	+	R	SNP	T	T	A			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	17	20450947	20450947	T	A	SNP	ENSG00000267075	ENST00000591705	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.025	-	-	-	no_errors	RP11-434D2.3	Clone_based_vega_gene	ENSG00000267075	tier1	-	-	41	0	0.00	39	10	20.41	0	0	0.00	0	0	0.00
LOC100508046	0	genome.wustl.edu	37	14	20010310	20010310	+	R	SNP	A	A	G			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	14	20010310	20010310	A	G	SNP	LOC100508046	ENST00000547584	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	RP11-244H18.1	Clone_based_vega_gene	ENSG00000258276	tier1	rs199892710	-	9	0	0.00	15	7	31.82	3	0	0.00	6	1	14.29
TBC1D30	0	genome.wustl.edu	37	12	65175020	65175020	+	Silent	SNP	G	G	A			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	12	65175020	65175020	G	A	SNP	TBC1D30	ENST00000229088	human	ensembl	74_37	+1	known	silent	c.432	p.Q144	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D30	HGNC	ENSG00000111490	tier1	-	-	11	0	0.00	3	5	62.50	2	0	0.00	1	0	0.00
PPP2R1B	0	genome.wustl.edu	37	11	111631590	111631590	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	11	111631590	111631590	G	T	SNP	PPP2R1B	ENST00000311129	human	ensembl	74_37	-1	known	missense	c.492	p.S164R	0.988	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	PPP2R1B	HGNC	ENSG00000137713	tier1	-	-	34	0	0.00	29	4	12.12	83	0	0.00	53	2	3.64
ENSG00000250910	0	genome.wustl.edu	37	4	156289996	156289996	+	R	DEL	A	A	-			TCGA-3B-A9HL-01A-11D-A387-09	TCGA-3B-A9HL-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2df266d0-ca15-4a97-9700-785c81b14aba	ff026b1d-93bb-4334-9949-690d71a376ed	4	156289996	156289996	A	-	DEL	ENSG00000250910	ENST00000597831	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC097467.2	Clone_based_vega_gene	ENSG00000250910	tier1			31	0	0.00	18	4	18.18	88	0	0.00	66	2	2.94
