Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
LILRB1	0	genome.wustl.edu	37	19	55147089	55147089	+	R	SNP	A	A	G			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	19	55147089	55147089	A	G	SNP	LILRB1	ENST00000462628	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LILRB1	HGNC	ENSG00000104972	tier1	-	-	49	0	0.00	70	12	14.63	15	0	0.00	17	2	10.53
CPA2	0	genome.wustl.edu	37	7	129908843	129908843	+	Missense_Mutation	SNP	A	A	T			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	7	129908843	129908843	A	T	SNP	CPA2	ENST00000222481	human	ensembl	74_37	+1	known	missense	c.146	p.H49L	0.996	pfam_Prot_inh_M14A,superfamily_Prot_inh_propept	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA2	HGNC	ENSG00000158516	tier1	-	-	59	0	0.00	44	12	21.43	103	0	0.00	85	45	34.62
CELSR1	0	genome.wustl.edu	37	22	46835181	46835181	+	Missense_Mutation	SNP	C	C	A			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	22	46835181	46835181	C	A	SNP	CELSR1	ENST00000262738	human	ensembl	74_37	-1	known	missense	c.4311	p.R1437S	0.997	superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275	tier1	-	-	81	0	0.00	58	34	36.56	23	0	0.00	20	13	39.39
MAGEB16	0	genome.wustl.edu	37	X	35821013	35821013	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	X	35821013	35821013	G	T	SNP	MAGEB16	ENST00000399992	human	ensembl	74_37	+1	known	missense	c.796	p.V266L	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB16	HGNC	ENSG00000189023	tier1	-	-	16	0	0.00	12	20	62.50	32	0	0.00	29	17	36.96
ARHGEF28	0	genome.wustl.edu	37	5	73045768	73045768	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	5	73045768	73045768	C	T	SNP	ARHGEF28	ENST00000545377	human	ensembl	74_37	+1	known	missense	c.140	p.A47V	0.946	NULL	pfam_DH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	ARHGEF28	HGNC	ENSG00000214944	tier1	-	-	25	0	0.00	40	12	23.08	75	0	0.00	85	15	15.00
PRAMEF12	0	genome.wustl.edu	37	1	12837633	12837633	+	Missense_Mutation	SNP	T	T	A			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	1	12837633	12837633	T	A	SNP	PRAMEF12	ENST00000357726	human	ensembl	74_37	+1	known	missense	c.1343	p.I448N	0.000	NULL	NULL	-	no_errors	PRAMEF12	HGNC	ENSG00000116726	tier1	-	-	73	0	0.00	63	14	18.18	18	0	0.00	21	4	16.00
KIF16B	0	genome.wustl.edu	37	20	16385512	16385512	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	20	16385512	16385512	G	A	SNP	KIF16B	ENST00000408042	human	ensembl	74_37	-1	known	missense	c.1730	p.T577I	0.998	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF16B	HGNC	ENSG00000089177	tier1	-	-	32	0	0.00	18	19	51.35	42	0	0.00	22	25	53.19
CEP170	0	genome.wustl.edu	37	1	243289697	243289697	+	R	SNP	T	T	A			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	1	243289697	243289697	T	A	SNP	CEP170	ENST00000466495	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CEP170	HGNC	ENSG00000143702	tier1	-	-	36	0	0.00	26	5	16.13	102	0	0.00	73	16	17.98
VIPAS39	0	genome.wustl.edu	37	14	77919693	77919693	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	14	77919693	77919693	C	T	SNP	VIPAS39	ENST00000343765	human	ensembl	74_37	-1	known	missense	c.145	p.D49N	1.000	pfam_Golgin_subfamily_A_member_5	pfam_Golgin_subfamily_A_member_5	-	no_errors	VIPAS39	HGNC	ENSG00000151445	tier1	-	-	53	0	0.00	42	14	25.00	65	0	0.00	52	18	25.71
GPR116	0	genome.wustl.edu	37	6	46832779	46832779	+	Missense_Mutation	SNP	C	C	A			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	6	46832779	46832779	C	A	SNP	GPR116	ENST00000265417	human	ensembl	74_37	-1	known	missense	c.1990	p.G664W	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_SEA_dom,pfam_GPS_dom,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,pfscan_Ig-like_dom,prints_GPCR_2_Ig-hepta_rcpt,prints_GPCR_2_secretin-like	-	no_errors	GPR116	HGNC	ENSG00000069122	tier1	-	-	54	0	0.00	51	15	22.73	102	0	0.00	59	28	32.18
CCPG1	0	genome.wustl.edu	37	15	55677813	55677813	+	Nonsense_Mutation	SNP	G	G	A			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	15	55677813	55677813	G	A	SNP	CCPG1	ENST00000310958	human	ensembl	74_37	-1	known	nonsense	c.160	p.Q54*	0.004	NULL	NULL	-	no_errors	CCPG1	HGNC	ENSG00000260916	tier1	-	-	67	0	0.00	38	12	24.00	38	0	0.00	36	7	16.28
ECE2	0	genome.wustl.edu	37	3	184002758	184002758	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	3	184002758	184002758	C	T	SNP	ECE2	ENST00000402825	human	ensembl	74_37	+1	known	missense	c.1367	p.A456V	0.891	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,pfam_Methyltransf_11,prints_Peptidase_M13_C	-	no_errors	ECE2	HGNC	ENSG00000145194	tier1	-	-	44	0	0.00	32	5	13.51	78	0	0.00	46	18	28.12
ITPK1	0	genome.wustl.edu	37	14	93408170	93408170	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	14	93408170	93408170	C	T	SNP	ITPK1	ENST00000267615	human	ensembl	74_37	-1	known	missense	c.981	p.M327I	0.000	NULL	pfam_Inositol_tetrakis-P_1-kinase	-	no_errors	ITPK1	HGNC	ENSG00000100605	tier1	-	-	22	0	0.00	19	82	80.39	23	0	0.00	12	38	76.00
EEA1	0	genome.wustl.edu	37	12	93171868	93171868	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	12	93171868	93171868	C	T	SNP	EEA1	ENST00000322349	human	ensembl	74_37	-1	known	missense	c.3742	p.E1248K	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	EEA1	HGNC	ENSG00000102189	tier1	-	-	46	0	0.00	45	10	18.18	76	0	0.00	56	17	23.29
PHKA2	0	genome.wustl.edu	37	X	18959720	18959720	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	X	18959720	18959720	G	A	SNP	PHKA2	ENST00000379942	human	ensembl	74_37	-1	known	missense	c.791	p.S264F	1.000	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKA2	HGNC	ENSG00000044446	tier1	-	-	27	0	0.00	28	5	15.15	46	0	0.00	35	6	14.29
GABRB2	0	genome.wustl.edu	37	5	160761819	160761819	+	Missense_Mutation	SNP	T	T	A			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	5	160761819	160761819	T	A	SNP	GABRB2	ENST00000274547	human	ensembl	74_37	-1	known	missense	c.772	p.I258F	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAb_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,prints_GABAAa_rcpt,tigrfam_Neur_channel	-	no_errors	GABRB2	HGNC	ENSG00000145864	tier1	-	-	78	0	0.00	42	12	22.22	111	0	0.00	46	12	20.69
ITGAD	0	genome.wustl.edu	37	16	31429830	31429830	+	Missense_Mutation	SNP	G	G	C			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	16	31429830	31429830	G	C	SNP	ITGAD	ENST00000389202	human	ensembl	74_37	+1	known	missense	c.2725	p.A909P	0.194	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAD	HGNC	ENSG00000156886	tier1	-	-	27	0	0.00	17	6	26.09	68	0	0.00	35	19	35.19
CECR2	0	genome.wustl.edu	37	22	17978464	17978464	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	22	17978464	17978464	G	A	SNP	CECR2	ENST00000400573	human	ensembl	74_37	+1	novel	missense	c.362	p.R121H	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	CECR2	HGNC	ENSG00000099954	tier1	-	-	31	0	0.00	14	22	61.11	148	1	0.67	36	53	59.55
WDR83	0	genome.wustl.edu	37	19	12784098	12784098	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	19	12784098	12784098	G	A	SNP	WDR83	ENST00000242796	human	ensembl	74_37	+1	known	missense	c.766	p.D256N	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR83	HGNC	ENSG00000123154	tier1	-	-	16	0	0.00	13	7	35.00	84	0	0.00	54	9	14.29
FBXO5	0	genome.wustl.edu	37	6	153293621	153293621	+	R	SNP	G	G	T			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	6	153293621	153293621	G	T	SNP	FBXO5	ENST00000477822	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	FBXO5	HGNC	ENSG00000112029	tier1	-	-	13	0	0.00	70	24	25.53	79	0	0.00	258	84	24.56
MAL	0	genome.wustl.edu	37	2	95719133	95719133	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	2	95719133	95719133	C	T	SNP	MAL	ENST00000309988	human	ensembl	74_37	+1	known	missense	c.395	p.S132F	0.144	pfam_Marvel,prints_MAL	pfam_Marvel,prints_MAL	-	no_errors	MAL	HGNC	ENSG00000172005	tier1	-	-	62	0	0.00	50	33	39.76	107	0	0.00	101	41	28.87
OR4K5	0	genome.wustl.edu	37	14	20388807	20388807	+	Silent	SNP	G	G	T			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	14	20388807	20388807	G	T	SNP	OR4K5	ENST00000315915	human	ensembl	74_37	+1	known	silent	c.42	p.L14	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4K5	HGNC	ENSG00000176281	tier1	-	-	40	0	0.00	54	5	8.47	111	0	0.00	103	18	14.88
RP1	0	genome.wustl.edu	37	8	55537592	55537592	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	8	55537592	55537592	G	A	SNP	RP1	ENST00000220676	human	ensembl	74_37	+1	known	missense	c.1150	p.A384T	0.003	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237	tier1	-	-	43	0	0.00	45	7	13.46	67	1	1.47	42	18	30.00
ZNF605	0	genome.wustl.edu	37	12	133502016	133502016	+	Silent	SNP	C	C	A			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	12	133502016	133502016	C	A	SNP	ZNF605	ENST00000360187	human	ensembl	74_37	-1	known	silent	c.1869	p.G623	0.445	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF605	HGNC	ENSG00000196458	tier1	-	-	47	0	0.00	23	8	25.81	70	0	0.00	34	6	15.00
FUK	0	genome.wustl.edu	37	16	70503093	70503093	+	Silent	SNP	G	G	A			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	16	70503093	70503093	G	A	SNP	FUK	ENST00000378912	human	ensembl	74_37	+1	known	silent	c.918	p.E306	0.796	pfam_Fucokinase	pfam_Fucokinase,pfam_GHMP_kinase_C_dom,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Trimer_LpxA-like,prints_Galkinase	-	no_errors	FUK	HGNC	ENSG00000157353	tier1	-	-	18	0	0.00	24	15	38.46	74	1	1.33	56	21	27.27
MCM3	0	genome.wustl.edu	37	6	52142390	52142390	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	6	52142390	52142390	C	T	SNP	MCM3	ENST00000596288	human	ensembl	74_37	-1	known	missense	c.1111	p.E371K	1.000	pfam_MCM_D-dep_ATPase,superfamily_P-loop_NTPase,smart_MCM_D-dep_ATPase,pfscan_MCM_D-dep_ATPase	pfam_MCM_D-dep_ATPase,pfam_Mg_chelatse_chII,superfamily_-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_D-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_D-dep_ATPase,prints_MCM_D-dep_ATPase,prints_Mcm3	-	no_errors	MCM3	HGNC	ENSG00000112118	tier1	-	-	75	0	0.00	54	19	26.03	61	0	0.00	51	20	28.17
SLC17A8	0	genome.wustl.edu	37	12	100811922	100811922	+	Missense_Mutation	SNP	G	G	C			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	12	100811922	100811922	G	C	SNP	SLC17A8	ENST00000323346	human	ensembl	74_37	+1	known	missense	c.1413	p.M471I	1.000	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A8	HGNC	ENSG00000179520	tier1	-	-	34	0	0.00	18	11	37.93	110	0	0.00	75	23	23.47
OVOL1	0	genome.wustl.edu	37	11	65562102	65562102	+	Nonsense_Mutation	SNP	A	A	T			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	11	65562102	65562102	A	T	SNP	OVOL1	ENST00000335987	human	ensembl	74_37	+1	known	nonsense	c.412	p.K138*	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	OVOL1	HGNC	ENSG00000172818	tier1	-	-	29	0	0.00	16	4	20.00	64	0	0.00	49	12	19.67
VIPAS39	0	genome.wustl.edu	37	14	77920424	77920424	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	14	77920424	77920424	C	T	SNP	VIPAS39	ENST00000343765	human	ensembl	74_37	-1	known	missense	c.22	p.E8K	1.000	NULL	pfam_Golgin_subfamily_A_member_5	-	no_errors	VIPAS39	HGNC	ENSG00000151445	tier1	-	-	57	0	0.00	59	11	15.71	119	0	0.00	117	21	15.22
ANKRD18B	0	genome.wustl.edu	37	9	33566235	33566235	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	9	33566235	33566235	G	A	SNP	ANKRD18B	ENST00000290943	human	ensembl	74_37	+1	known	missense	c.2293	p.E765K	0.000	NULL	pfam_DUF3496,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD18B	HGNC	ENSG00000230453	tier1	-	-	78	0	0.00	86	21	19.63	21	0	0.00	13	7	35.00
PALLD	0	genome.wustl.edu	37	4	169846211	169846211	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	4	169846211	169846211	G	T	SNP	PALLD	ENST00000261509	human	ensembl	74_37	+1	known	missense	c.3289	p.A1097S	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PALLD	HGNC	ENSG00000129116	tier1	-	-	51	0	0.00	100	11	9.91	77	0	0.00	155	28	15.30
ATRX	0	genome.wustl.edu	37	X	76931772	76931772	+	Nonsense_Mutation	SNP	G	G	C			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	X	76931772	76931772	G	C	SNP	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	nonsense	c.3758	p.S1253*	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	tier1	-	-	17	0	0.00	6	12	66.67	47	0	0.00	17	23	57.50
DBT	0	genome.wustl.edu	37	1	100671856	100671856	+	Missense_Mutation	SNP	A	A	G			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	1	100671856	100671856	A	G	SNP	DBT	ENST00000370132	human	ensembl	74_37	-1	known	missense	c.1211	p.I404T	1.000	pfam_2-oxoacid_DH_actylTfrase	pfam_2-oxoacid_DH_actylTfrase,pfam_Biotin_lipoyl,pfam_E3-bd,superfamily_Single_hybrid_motif,superfamily_E3-bd,pfscan_Biotin_lipoyl	-	no_errors	DBT	HGNC	ENSG00000137992	tier1	-	-	90	0	0.00	52	23	30.67	35	0	0.00	25	15	37.50
CORIN	0	genome.wustl.edu	37	4	47625635	47625635	+	Silent	SNP	G	G	A			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	4	47625635	47625635	G	A	SNP	CORIN	ENST00000273857	human	ensembl	74_37	-1	known	silent	c.2493	p.V831	0.992	pirsf_Peptidase_S1A_corin,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Peptidase_S1	pirsf_Peptidase_S1A_corin,pfam_Peptidase_S1,pfam_LDrepeatLR_classA_rpt,pfam_Frizzled_dom,superfamily_Trypsin-like_Pept_dom,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_Frizzled_dom,smart_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1,prints_LDrepeatLR_classA_rpt,prints_Peptidase_S1A,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1	-	no_errors	CORIN	HGNC	ENSG00000145244	tier1	-	-	39	0	0.00	63	8	11.11	90	0	0.00	110	14	11.29
MUC16	0	genome.wustl.edu	37	19	9080536	9080536	+	Silent	SNP	C	C	A			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	19	9080536	9080536	C	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.9495	p.V3165	0.001	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143	tier1	-	-	75	0	0.00	102	13	11.30	63	0	0.00	89	16	15.24
LMNB1	0	genome.wustl.edu	37	5	126154807	126154807	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	5	126154807	126154807	G	A	SNP	LMNB1	ENST00000261366	human	ensembl	74_37	+1	known	missense	c.1133	p.R378K	1.000	pfam_IF	pfam_IF,pfam_Lamin_tail_dom	-	no_errors	LMNB1	HGNC	ENSG00000113368	tier1	-	-	21	0	0.00	15	25	62.50	94	0	0.00	66	75	53.19
COL4A6	0	genome.wustl.edu	37	X	107415762	107415762	+	Missense_Mutation	SNP	C	C	A			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	X	107415762	107415762	C	A	SNP	COL4A6	ENST00000372216	human	ensembl	74_37	-1	known	missense	c.3142	p.G1048C	1.000	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A6	HGNC	ENSG00000197565	tier1	-	-	29	0	0.00	20	11	35.48	46	0	0.00	41	18	30.51
CFHR4	0	genome.wustl.edu	37	1	196876137	196876137	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	1	196876137	196876137	G	A	SNP	CFHR4	ENST00000367416	human	ensembl	74_37	+1	known	missense	c.583	p.D195N	0.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR4	HGNC	ENSG00000134365	tier1	-	-	102	0	0.00	103	22	17.60	59	0	0.00	74	13	14.94
ZNF284	0	genome.wustl.edu	37	19	44590253	44590254	+	Frame_Shift_Ins	INS	-	-	G			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	-	-	-	G	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	19	44590253	44590254	-	G	INS	ZNF284	ENST00000421176	human	ensembl	74_37	+1	known	frame_shift_ins	c.622_623	p.C208fs	0.992:1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF284	HGNC	ENSG00000186026	tier1			29	0	0.00	28	4	12.50	81	0	0.00	64	17	20.99
NTM	0	genome.wustl.edu	37	11	132206330	132206330	+	R	SNP	G	G	A			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	11	132206330	132206330	G	A	SNP	NTM	ENST00000474900	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	NTM	HGNC	ENSG00000182667	tier1	-	-	14	0	0.00	7	6	46.15	26	0	0.00	9	2	18.18
RRN3	0	genome.wustl.edu	37	16	15188050	15188050	+	Missense_Mutation	SNP	G	G	C			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	16	15188050	15188050	G	C	SNP	RRN3	ENST00000198767	human	ensembl	74_37	-1	known	missense	c.41	p.A14G	0.021	NULL	pfam_R_pol_I_trans_ini_fac_RRN3,superfamily_ARM-type_fold	-	no_errors	RRN3	HGNC	ENSG00000085721	tier1	-	-	67	0	0.00	58	32	35.56	9	0	0.00	7	6	46.15
AGAP2	0	genome.wustl.edu	37	12	58131125	58131125	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	12	58131125	58131125	G	A	SNP	AGAP2	ENST00000547588	human	ensembl	74_37	-1	known	missense	c.905	p.A302V	0.002	NULL	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP2	HGNC	ENSG00000135439	tier1	-	-	126	0	0.00	1492	168	10.10	12	0	0.00	212	10	4.50
KRBA1	0	genome.wustl.edu	37	7	149422472	149422472	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	7	149422472	149422472	G	T	SNP	KRBA1	ENST00000255992	human	ensembl	74_37	+1	known	missense	c.1193	p.G398V	0.000	NULL	NULL	-	no_errors	KRBA1	HGNC	ENSG00000133619	tier1	-	-	40	0	0.00	29	8	21.62	121	0	0.00	75	8	9.64
DAB2	0	genome.wustl.edu	37	5	39394370	39394370	+	Missense_Mutation	SNP	G	G	C			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	5	39394370	39394370	G	C	SNP	DAB2	ENST00000320816	human	ensembl	74_37	-1	known	missense	c.53	p.A18G	0.995	NULL	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	-	no_errors	DAB2	HGNC	ENSG00000153071	tier1	-	-	35	0	0.00	85	13	13.27	61	0	0.00	97	7	6.73
ANKRD31	0	genome.wustl.edu	37	5	74400097	74400097	+	Nonsense_Mutation	SNP	C	C	A			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	5	74400097	74400097	C	A	SNP	ANKRD31	ENST00000274361	human	ensembl	74_37	-1	known	nonsense	c.5116	p.G1706*	0.997	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD31	HGNC	ENSG00000145700	tier1	-	-	70	0	0.00	86	16	15.69	55	0	0.00	61	4	6.15
AGAP2	0	genome.wustl.edu	37	12	58131104	58131104	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	12	58131104	58131104	G	A	SNP	AGAP2	ENST00000547588	human	ensembl	74_37	-1	known	missense	c.926	p.S309F	0.951	NULL	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP2	HGNC	ENSG00000135439	tier1	-	-	109	0	0.00	1307	163	11.09	11	0	0.00	204	9	4.21
DCSTAMP	0	genome.wustl.edu	37	8	105367287	105367287	+	Silent	SNP	G	G	A			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	8	105367287	105367287	G	A	SNP	DCSTAMP	ENST00000297581	human	ensembl	74_37	+1	known	silent	c.1212	p.V404	0.997	pfam_DC_STAMP-like,superfamily_ABC1_TM_dom	pfam_DC_STAMP-like,superfamily_ABC1_TM_dom	-	no_errors	DCSTAMP	HGNC	ENSG00000164935	tier1	-	-	48	0	0.00	41	11	21.15	68	0	0.00	83	8	8.79
PNPLA4	0	genome.wustl.edu	37	X	7894060	7894060	+	Missense_Mutation	SNP	T	T	G			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	X	7894060	7894060	T	G	SNP	PNPLA4	ENST00000381042	human	ensembl	74_37	-1	known	missense	c.101	p.K34T	0.128	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase	-	no_errors	PNPLA4	HGNC	ENSG00000006757	tier1	-	-	21	0	0.00	19	5	20.83	35	0	0.00	69	6	8.00
CTGF	0	genome.wustl.edu	37	6	132271222	132271222	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	6	132271222	132271222	C	T	SNP	CTGF	ENST00000367976	human	ensembl	74_37	-1	known	missense	c.620	p.S207N	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pirsf_IGFBP_CNN,pfscan_Thrombospondin_1_rpt	pfam_Cys_knot,pfam_IGFBP-like,pfam_VWF_C,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	CTGF	HGNC	ENSG00000118523	tier1	-	-	39	0	0.00	69	9	11.54	124	0	0.00	219	16	6.81
RAET1G	0	genome.wustl.edu	37	6	150240213	150240213	+	Missense_Mutation	SNP	C	C	A			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	6	150240213	150240213	C	A	SNP	RAET1G	ENST00000367360	human	ensembl	74_37	-1	known	missense	c.597	p.M199I	0.000	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	-	no_errors	RAET1G	HGNC	ENSG00000203722	tier1	-	-	52	0	0.00	86	12	12.24	67	0	0.00	112	10	8.20
BGLAP	0	genome.wustl.edu	37	1	156212062	156212062	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	1	156212062	156212062	G	A	SNP	BGLAP	ENST00000368272	human	ensembl	74_37	+1	known	missense	c.40	p.A14T	0.003	NULL	pfam_GLA_domain,superfamily_GLA_domain,smart_GLA_domain,pfscan_GLA_domain,prints_Osteocalcin/MGP	-	no_errors	BGLAP	HGNC	ENSG00000242252	tier1	-	-	16	0	0.00	17	18	51.43	6	0	0.00	3	0	0.00
FAM228A	0	genome.wustl.edu	37	2	24423529	24423530	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	2	24423529	24423530	AA	-	DEL	FAM228A	ENST00000415196	human	ensembl	74_37	+1	novel	frame_shift_del	c.327_328	p.R111fs	0.000:0.011	NULL	NULL	-	no_errors	FAM228A	HGNC	ENSG00000186453	tier1			25	0	0.00	22	7	24.14	10	0	0.00	7	0	0.00
R5-8SP6	0	genome.wustl.edu	37	Y	10037819	10037819	+	R	SNP	T	T	G			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	Y	10037819	10037819	T	G	SNP	R5-8SP6	ENST00000515896	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	R5-8SP6	HGNC	ENSG00000251705	tier1	-	-	85	0	0.00	51	5	8.93	8	0	0.00	4	0	0.00
R5-8SP6	0	genome.wustl.edu	37	Y	10037835	10037835	+	R	SNP	T	T	C			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	Y	10037835	10037835	T	C	SNP	R5-8SP6	ENST00000515896	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	R5-8SP6	HGNC	ENSG00000251705	tier1	-	-	85	0	0.00	52	5	8.77	5	0	0.00	6	0	0.00
DCAF8L2	0	genome.wustl.edu	37	X	27765613	27765613	+	Missense_Mutation	SNP	C	C	A			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	X	27765613	27765613	C	A	SNP	DCAF8L2	ENST00000451261	human	ensembl	74_37	+1	known	missense	c.601	p.R201S	0.003	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8L2	HGNC	ENSG00000189186	tier1	-	-	23	0	0.00	10	22	68.75	3	0	0.00	3	1	25.00
ENSG00000221664	0	genome.wustl.edu	37	1	77857162	77857163	+	R	INS	-	-	TGTA			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	1	77857162	77857163	-	TGTA	INS	ENSG00000221664	ENST00000408737	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.991:0.991	-	-	-	no_errors	AC095030.1	Clone_based_ensembl_gene	ENSG00000221664	tier1			30	0	0.00	25	5	16.67	0	0	0.00	0	0	0.00
ENSG00000227175	0	genome.wustl.edu	37	10	13570570	13570584	+	R	DEL	GCGGCAGCGGCGGCA	GCGGCAGCGGCGGCA	-			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	GCGGCAGCGGCGGCA	GCGGCAGCGGCGGCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	10	13570570	13570584	GCGGCAGCGGCGGCA	-	DEL	ENSG00000227175	ENST00000438431	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005:0.008:0.010:0.011:0.013:0.013:0.014:0.014:0.013:0.013:0.012:0.010:0.008:0.006:0.003	-	-	-	no_errors	RP11-214D15.2	Clone_based_vega_gene	ENSG00000227175	tier1			0	0	0.00	0	1	100.00	0	0	0.00	0	1	100.00
LILRB5	0	genome.wustl.edu	37	19	54759174	54759174	+	Silent	SNP	G	G	A			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	19	54759174	54759174	G	A	SNP	LILRB5	ENST00000450632	human	ensembl	74_37	-1	known	silent	c.900	p.S300	0.822	smart_Ig_sub	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LILRB5	HGNC	ENSG00000105609	tier1	-	-	125	1	0.79	130	25	16.13	2	0	0.00	0	1	100.00
MT-CO2	0	genome.wustl.edu	37	MT	7595	7595	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	MT	7595	7595	G	A	SNP	MT-CO2	ENST00000361739	human	ensembl	74_37	+1	known	missense	c.10	p.A4T	NULL	pfam_Cyt_c_oxidase_su2_TM_dom,superfamily_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_TM_dom	pfam_Cyt_c_oxidase_su2_C,pfam_Cyt_c_oxidase_su2_TM_dom,superfamily_Cupredoxin,superfamily_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_C,tigrfam_Cyt_c_oxidase_su2	-	no_errors	MT-CO2	HGNC	ENSG00000198712	tier1	-	-	418	0	0.00	614	67	9.84	2	0	0.00	1	0	0.00
NOTCH3	0	genome.wustl.edu	37	19	15285085	15285085	+	Silent	SNP	G	G	A			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	19	15285085	15285085	G	A	SNP	NOTCH3	ENST00000263388	human	ensembl	74_37	-1	known	silent	c.4530	p.R1510	0.171	pirsf_Notch,pfam_Notch_NOD_dom	pirsf_Notch,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_Notch_dom,pfam_Notch_NODP_dom,pfam_Notch_NOD_dom,pfam_EGF_extracell,pfam_DUF3454_notch,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_3,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH3	HGNC	ENSG00000074181	tier1	-	-	37	0	0.00	31	6	16.22	1	0	0.00	2	0	0.00
R5-8SP6	0	genome.wustl.edu	37	Y	10037863	10037863	+	R	DEL	C	C	-			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	Y	10037863	10037863	C	-	DEL	R5-8SP6	ENST00000515896	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	R5-8SP6	HGNC	ENSG00000251705	tier1			80	0	0.00	44	5	10.20	4	0	0.00	4	0	0.00
R5-8SP6	0	genome.wustl.edu	37	Y	10037867	10037867	+	R	SNP	C	C	T			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	Y	10037867	10037867	C	T	SNP	R5-8SP6	ENST00000515896	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	R5-8SP6	HGNC	ENSG00000251705	tier1	-	-	78	0	0.00	36	11	23.40	4	0	0.00	4	0	0.00
TRIM48	0	genome.wustl.edu	37	11	55036763	55036763	+	Silent	SNP	G	G	A			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	11	55036763	55036763	G	A	SNP	TRIM48	ENST00000417545	human	ensembl	74_37	+1	known	silent	c.624	p.A208	0.036	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM48	HGNC	ENSG00000150244	tier1	rs201463527	-	171	0	0.00	118	42	26.25	0	0	0.00	0	0	0.00
XKRX	0	genome.wustl.edu	37	X	100182986	100182986	+	Missense_Mutation	SNP	T	T	G			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	X	100182986	100182986	T	G	SNP	XKRX	ENST00000328526	human	ensembl	74_37	-1	known	missense	c.347	p.H116P	1.000	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKRX	HGNC	ENSG00000182489	tier1	-	-	51	0	0.00	75	7	8.54	71	0	0.00	53	3	5.36
UBE3B	0	genome.wustl.edu	37	12	109949045	109949045	+	Silent	SNP	C	C	T			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	12	109949045	109949045	C	T	SNP	UBE3B	ENST00000342494	human	ensembl	74_37	+1	known	silent	c.1893	p.D631	1.000	NULL	pfam_HECT,pfam_IQ_motif_EF-hand-BS,superfamily_HECT,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,smart_HECT,pfscan_HECT,pfscan_IQ_motif_EF-hand-BS	-	no_errors	UBE3B	HGNC	ENSG00000151148	tier1	-	-	39	0	0.00	37	4	9.76	106	0	0.00	96	2	2.02
F8	0	genome.wustl.edu	37	X	154197706	154197706	+	Silent	SNP	C	C	T			TCGA-3B-A9HS-01A-11D-A38Z-09	TCGA-3B-A9HS-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ac8e72b9-4469-4d80-a5a0-df3fc36380ff	25e4da82-09d2-4931-b4ca-50d5f74599d1	X	154197706	154197706	C	T	SNP	F8	ENST00000360256	human	ensembl	74_37	-1	known	silent	c.909	p.A303	0.891	superfamily_Cupredoxin	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010	tier1	-	-	27	0	0.00	22	4	14.81	57	0	0.00	48	2	4.00
