Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
MOV10	0	genome.wustl.edu	37	1	113229666	113229666	+	R	SNP	G	G	A			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	1	113229666	113229666	G	A	SNP	MOV10	ENST00000465579	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MOV10	HGNC	ENSG00000155363	tier1	-	-	57	0	0.00	55	33	37.50	94	0	0.00	74	26	25.49
KIAA1919	0	genome.wustl.edu	37	6	111588190	111588190	+	Silent	SNP	G	G	A			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	6	111588190	111588190	G	A	SNP	KIAA1919	ENST00000368847	human	ensembl	74_37	+1	known	silent	c.1425	p.L475	0.000	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	KIAA1919	HGNC	ENSG00000173214	tier1	-	-	70	0	0.00	49	14	22.22	105	0	0.00	79	28	25.93
LRRC4	0	genome.wustl.edu	37	7	127668846	127668846	+	Silent	SNP	G	G	T			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	7	127668846	127668846	G	T	SNP	LRRC4	ENST00000249363	human	ensembl	74_37	-1	known	silent	c.1848	p.A616	1.000	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC4	HGNC	ENSG00000128594	tier1	-	-	49	0	0.00	34	16	32.00	118	0	0.00	100	31	23.66
LRRC4	0	genome.wustl.edu	37	7	127668847	127668847	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	7	127668847	127668847	G	A	SNP	LRRC4	ENST00000249363	human	ensembl	74_37	-1	known	missense	c.1847	p.A616V	1.000	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC4	HGNC	ENSG00000128594	tier1	-	-	47	0	0.00	33	17	34.00	117	0	0.00	100	31	23.66
ATR	0	genome.wustl.edu	37	3	142277619	142277619	+	Splice_Site	SNP	C	C	T			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	3	142277619	142277619	C	T	SNP	ATR	ENST00000350721	human	ensembl	74_37	-1	known	splice_site	c.1733-1	e8-1	1.000	-	-	-	no_errors	ATR	HGNC	ENSG00000175054	tier1	-	-	113	0	0.00	87	45	33.83	40	0	0.00	79	28	26.17
SEMG1	0	genome.wustl.edu	37	20	43836987	43836987	+	Missense_Mutation	SNP	C	C	G			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	20	43836987	43836987	C	G	SNP	SEMG1	ENST00000372781	human	ensembl	74_37	+1	known	missense	c.1049	p.S350C	0.000	pfam_Semenogelin	pfam_Semenogelin	-	no_errors	SEMG1	HGNC	ENSG00000124233	tier1	-	-	48	0	0.00	53	19	26.39	40	0	0.00	36	13	26.53
NOA1	0	genome.wustl.edu	37	4	57843743	57843743	+	Silent	SNP	G	G	C			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	4	57843743	57843743	G	C	SNP	NOA1	ENST00000264230	human	ensembl	74_37	-1	known	silent	c.9	p.P3	0.000	NULL	superfamily_P-loop_NTPase	-	no_errors	NOA1	HGNC	ENSG00000084092	tier1	-	-	45	0	0.00	32	11	25.58	54	0	0.00	27	20	42.55
CEP192	0	genome.wustl.edu	37	18	13056253	13056253	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	18	13056253	13056253	G	A	SNP	CEP192	ENST00000506447	human	ensembl	74_37	+1	known	missense	c.3664	p.E1222K	0.000	NULL	NULL	-	no_errors	CEP192	HGNC	ENSG00000101639	tier1	-	-	20	0	0.00	14	9	39.13	86	0	0.00	59	25	29.76
C16orf62	0	genome.wustl.edu	37	16	19663381	19663381	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	16	19663381	19663381	G	T	SNP	C16orf62	ENST00000438132	human	ensembl	74_37	+1	known	missense	c.2457	p.Q819H	1.000	NULL	NULL	-	no_errors	C16orf62	HGNC	ENSG00000103544	tier1	-	-	44	0	0.00	29	21	42.00	100	1	0.98	52	26	33.33
ST8SIA4	0	genome.wustl.edu	37	5	100192092	100192092	+	Missense_Mutation	SNP	A	A	T			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	5	100192092	100192092	A	T	SNP	ST8SIA4	ENST00000231461	human	ensembl	74_37	-1	known	missense	c.512	p.L171Q	1.000	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA4	HGNC	ENSG00000113532	tier1	-	-	28	0	0.00	27	14	34.15	47	0	0.00	46	15	24.59
OTOF	0	genome.wustl.edu	37	2	26750774	26750774	+	Silent	SNP	C	C	T			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	2	26750774	26750774	C	T	SNP	OTOF	ENST00000272371	human	ensembl	74_37	-1	known	silent	c.153	p.P51	0.007	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	OTOF	HGNC	ENSG00000115155	tier1	-	-	56	0	0.00	33	32	48.48	44	0	0.00	22	11	33.33
SNORA25	0	genome.wustl.edu	37	11	93463686	93463686	+	R	SNP	T	T	G			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	11	93463686	93463686	T	G	SNP	SNORA25	ENST00000384384	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.290	-	-	-	no_errors	SNORA25	HGNC	ENSG00000207112	tier1	-	-	77	0	0.00	80	20	20.00	35	0	0.00	57	23	28.75
CNOT8	0	genome.wustl.edu	37	5	154252173	154252173	+	Missense_Mutation	SNP	T	T	G			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	5	154252173	154252173	T	G	SNP	CNOT8	ENST00000285896	human	ensembl	74_37	+1	known	missense	c.691	p.S231A	1.000	pfam_RNase_CAF1,superfamily_RNaseH-like_dom	pfam_RNase_CAF1,superfamily_RNaseH-like_dom	-	no_errors	CNOT8	HGNC	ENSG00000155508	tier1	-	-	79	0	0.00	73	24	24.74	67	0	0.00	43	9	17.31
APC2	0	genome.wustl.edu	37	9	140080800	140080800	+	Missense_Mutation	SNP	A	A	C			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	9	140080800	140080800	A	C	SNP	APC2	ENST00000323927	human	ensembl	74_37	-1	known	missense	c.749	p.L250R	1.000	NULL	pfam_Cullin_N,pfam_APC_su2_C,superfamily_Cullin_homology,smart_Cullin_homology,pfscan_Cullin_homology	-	no_errors	APC2	HGNC	ENSG00000176248	tier1	-	-	70	0	0.00	40	28	41.18	42	0	0.00	13	10	43.48
RPGRIP1L	0	genome.wustl.edu	37	16	53691422	53691422	+	Silent	SNP	C	C	T			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	16	53691422	53691422	C	T	SNP	RPGRIP1L	ENST00000379925	human	ensembl	74_37	-1	known	silent	c.1524	p.E508	1.000	NULL	pfam_DUF3250,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	RPGRIP1L	HGNC	ENSG00000103494	tier1	-	-	73	0	0.00	37	34	47.89	29	0	0.00	34	16	32.00
ADCYAP1R1	0	genome.wustl.edu	37	7	31120238	31120238	+	Silent	SNP	C	C	T			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	7	31120238	31120238	C	T	SNP	ADCYAP1R1	ENST00000304166	human	ensembl	74_37	+1	known	silent	c.276	p.T92	0.009	pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,prints_GPCR_2_PACAP_1_rcpt	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_PACAP_1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	ADCYAP1R1	HGNC	ENSG00000078549	tier1	-	-	23	0	0.00	19	15	44.12	76	0	0.00	39	7	15.22
LRP2	0	genome.wustl.edu	37	2	170065981	170065981	+	Missense_Mutation	SNP	C	C	A			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	2	170065981	170065981	C	A	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	missense	c.6451	p.A2151S	1.000	smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	tier1	-	-	59	0	0.00	58	21	26.58	70	0	0.00	87	25	22.32
CD163	0	genome.wustl.edu	37	12	7636086	7636086	+	Nonsense_Mutation	SNP	C	C	A			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	12	7636086	7636086	C	A	SNP	CD163	ENST00000359156	human	ensembl	74_37	-1	known	nonsense	c.2965	p.G989*	0.948	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_SRCR,pfscan_SRCR	-	no_errors	CD163	HGNC	ENSG00000177575	tier1	-	-	19	0	0.00	22	9	28.12	94	0	0.00	78	29	26.85
ATF4	0	genome.wustl.edu	37	22	39917546	39917546	+	Silent	SNP	T	T	G			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	22	39917546	39917546	T	G	SNP	ATF4	ENST00000337304	human	ensembl	74_37	+1	known	silent	c.96	p.G32	1.000	NULL	pfam_bZIP,smart_bZIP,pfscan_bZIP	-	no_errors	ATF4	HGNC	ENSG00000128272	tier1	-	-	75	0	0.00	64	15	18.99	66	0	0.00	32	14	30.43
PFKFB4	0	genome.wustl.edu	37	3	48587370	48587370	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	3	48587370	48587370	G	A	SNP	PFKFB4	ENST00000232375	human	ensembl	74_37	-1	known	missense	c.238	p.R80W	1.000	pfam_6Phosfructo_kin,superfamily_P-loop_NTPase,pirsf_Bifunct_6PFK/fruc_bisP_Ptase	pfam_6Phosfructo_kin,pfam_His_Pase_superF_clade-1,superfamily_P-loop_NTPase,smart_His_Pase_superF_clade-1,pirsf_Bifunct_6PFK/fruc_bisP_Ptase,prints_6Pfruct_kin	-	no_errors	PFKFB4	HGNC	ENSG00000114268	tier1	rs201114950	-	70	0	0.00	68	41	37.61	115	0	0.00	92	28	22.95
PER2	0	genome.wustl.edu	37	2	239170424	239170424	+	Silent	SNP	G	G	C			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	2	239170424	239170424	G	C	SNP	PER2	ENST00000254657	human	ensembl	74_37	-1	known	silent	c.1362	p.A454	0.354	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	PER2	HGNC	ENSG00000132326	tier1	-	-	42	0	0.00	39	22	36.07	46	0	0.00	34	14	29.17
CFH	0	genome.wustl.edu	37	1	196654214	196654214	+	Missense_Mutation	SNP	T	T	A			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	1	196654214	196654214	T	A	SNP	CFH	ENST00000367429	human	ensembl	74_37	+1	known	missense	c.811	p.Y271N	0.008	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFH	HGNC	ENSG00000000971	tier1	-	-	77	0	0.00	69	40	36.70	40	0	0.00	78	49	38.58
KIAA1919	0	genome.wustl.edu	37	6	111588128	111588128	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	6	111588128	111588128	G	A	SNP	KIAA1919	ENST00000368847	human	ensembl	74_37	+1	known	missense	c.1363	p.E455K	1.000	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	KIAA1919	HGNC	ENSG00000173214	tier1	-	-	56	0	0.00	41	15	26.79	106	0	0.00	81	30	27.03
KCP	0	genome.wustl.edu	37	7	128526723	128526723	+	R	SNP	A	A	T			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	7	128526723	128526723	A	T	SNP	KCP	ENST00000297801	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	KCP	HGNC	ENSG00000135253	tier1	-	-	44	0	0.00	28	13	30.95	86	0	0.00	59	33	35.87
NMT1	0	genome.wustl.edu	37	1	10042481	10042481	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	1	10042481	10042481	C	T	SNP	NMT1	ENST00000377205	human	ensembl	74_37	+1	known	missense	c.562	p.R188W	0.999	pfam_Cyt_trans-like,tigrfam_MN_adtrnsfrase	pfam_Cyt_trans-like,tigrfam_MN_adtrnsfrase	-	no_errors	NMT1	HGNC	ENSG00000173614	tier1	-	-	38	0	0.00	51	10	16.39	78	1	1.27	56	11	16.42
TP53	0	genome.wustl.edu	37	17	7577114	7577114	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	17	7577114	7577114	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.824	p.C275Y	1.000	pfam_p53_D-bd,superfamily_p53-like_TF_D-bd,prints_p53_tumour_suppressor	pfam_p53_D-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_D-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	37	0	0.00	17	16	48.48	118	0	0.00	32	23	41.82
MEGF10	0	genome.wustl.edu	37	5	126774171	126774171	+	Silent	SNP	G	G	A			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	5	126774171	126774171	G	A	SNP	MEGF10	ENST00000274473	human	ensembl	74_37	+1	known	silent	c.2145	p.T715	0.000	smart_EG-like_dom,pfscan_EG-like_dom	pfam_EGF_laminin,pfam_EGF_extracell,superfamily_Proteinase_amylase_inhib_dom,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	MEGF10	HGNC	ENSG00000145794	tier1	rs200994008	GMAF=0	56	0	0.00	46	22	32.35	59	0	0.00	49	24	32.88
CARD11	0	genome.wustl.edu	37	7	2959095	2959095	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	7	2959095	2959095	C	T	SNP	CARD11	ENST00000396946	human	ensembl	74_37	-1	known	missense	c.2421	p.M807I	1.000	NULL	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286	tier1	-	-	43	0	0.00	21	6	22.22	76	0	0.00	47	21	30.88
DH8	0	genome.wustl.edu	37	6	38835893	38835893	+	Missense_Mutation	SNP	C	C	G			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	6	38835893	38835893	C	G	SNP	DH8	ENST00000359357	human	ensembl	74_37	+1	known	missense	c.6098	p.S2033C	1.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DH8	HGNC	ENSG00000124721	tier1	-	-	107	0	0.00	85	44	34.11	43	0	0.00	63	23	26.74
RUNX2	0	genome.wustl.edu	37	6	45514992	45514992	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	6	45514992	45514992	G	T	SNP	RUNX2	ENST00000352853	human	ensembl	74_37	+1	known	missense	c.1720	p.V574F	1.000	pfam_RunxI_C_dom,prints_AML1_Runt	pfam_Runt_dom,pfam_RunxI_C_dom,superfamily_p53-like_TF_D-bd,pfscan_Runt_dom,prints_AML1_Runt	-	no_errors	RUNX2	HGNC	ENSG00000124813	tier1	-	-	28	0	0.00	40	11	21.57	108	0	0.00	91	40	30.30
USP31	0	genome.wustl.edu	37	16	23119385	23119387	+	In_Frame_Del	DEL	ACT	ACT	-			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	ACT	ACT	ACT	-	ACT	ACT	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	16	23119385	23119387	ACT	-	DEL	USP31	ENST00000219689	human	ensembl	74_37	-1	known	in_frame_del	c.753_751	p.S251in_frame_del	0.614:0.991:0.997	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP31	HGNC	ENSG00000103404	tier1			52	0	0.00	60	15	20.00	76	0	0.00	49	22	30.99
PTEN	0	genome.wustl.edu	37	10	89692791	89692791	+	Missense_Mutation	SNP	A	A	T			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	10	89692791	89692791	A	T	SNP	PTEN	ENST00000371953	human	ensembl	74_37	+1	known	missense	c.275	p.D92V	1.000	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_dom,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	tier1	-	-	46	0	0.00	23	21	46.67	20	0	0.00	3	4	57.14
RFX7	0	genome.wustl.edu	37	15	56535479	56535479	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	15	56535479	56535479	G	A	SNP	RFX7	ENST00000423270	human	ensembl	74_37	-1	known	missense	c.5	p.A2V	1.000	NULL	pfam_D-bd_RFX	-	no_errors	RFX7	HGNC	ENSG00000181827	tier1	-	-	48	0	0.00	49	17	25.76	5	0	0.00	4	2	33.33
ADAM21P1	0	genome.wustl.edu	37	14	70714087	70714087	+	R	SNP	T	T	G			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	14	70714087	70714087	T	G	SNP	ADAM21P1	ENST00000530196	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ADAM21P1	HGNC	ENSG00000235812	tier1	rs79122905	-	47	0	0.00	52	9	14.75	115	0	0.00	99	8	7.48
CCDC105	0	genome.wustl.edu	37	19	15132444	15132444	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	19	15132444	15132444	C	T	SNP	CCDC105	ENST00000292574	human	ensembl	74_37	+1	known	missense	c.1058	p.T353M	0.484	pfam_Tektin	pfam_Tektin	-	no_errors	CCDC105	HGNC	ENSG00000160994	tier1	-	-	113	0	0.00	81	38	31.93	151	2	1.31	101	29	21.97
ENSG00000221684	0	genome.wustl.edu	37	X	70979276	70979276	+	R	SNP	A	A	G			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	X	70979276	70979276	A	G	SNP	ENSG00000221684	ENST00000408757	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.001	-	-	-	no_errors	BX276092.1	Clone_based_ensembl_gene	ENSG00000221684	tier1	rs67643106	-	39	0	0.00	39	6	13.33	0	0	0.00	0	0	0.00
FAM138D	0	genome.wustl.edu	37	12	148078	148078	+	R	SNP	G	G	A			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	12	148078	148078	G	A	SNP	FAM138D	ENST00000320165	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM138D	HGNC	ENSG00000206114	tier1	rs8181620	-	13	0	0.00	4	4	50.00	0	0	0.00	0	0	0.00
MFSD12	0	genome.wustl.edu	37	19	3557210	3557212	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	CAG	CAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	19	3557210	3557212	CAG	-	DEL	MFSD12	ENST00000398558	human	ensembl	74_37	-1	known	in_frame_del	c.192_190	p.L64in_frame_del	0.647:0.925:0.999	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD12	HGNC	ENSG00000161091	tier1			22	0	0.00	23	3	11.54	1	0	0.00	8	0	0.00
MON1A	0	genome.wustl.edu	37	3	49967152	49967152	+	Silent	SNP	G	G	A			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	3	49967152	49967152	G	A	SNP	MON1A	ENST00000296473	human	ensembl	74_37	-1	known	silent	c.168	p.R56	0.002	NULL	pfam_Vacuolar_fusion_protein_MON1,superfamily_Longin-like_dom,prints_Vacuolar_fusion_protein_MON1	-	no_errors	MON1A	HGNC	ENSG00000164077	tier1	-	-	21	0	0.00	14	10	41.67	4	0	0.00	0	0	0.00
RN7SL495P	0	genome.wustl.edu	37	15	23263805	23263805	+	R	SNP	G	G	A			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	15	23263805	23263805	G	A	SNP	RN7SL495P	ENST00000461817	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.404	-	-	-	no_errors	RN7SL495P	HGNC	ENSG00000244736	tier1	-	-	53	0	0.00	66	23	25.84	0	0	0.00	0	0	0.00
DIS3L2	0	genome.wustl.edu	37	2	232995570	232995570	+	R	DEL	A	A	-			TCGA-3B-A9HZ-01A-11D-A38Z-09	TCGA-3B-A9HZ-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	22a78893-3edf-442b-ac7b-78d969165f30	fd3defe6-b6ae-4755-85f4-80f2321a7c99	2	232995570	232995570	A	-	DEL	DIS3L2	ENST00000470087	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DIS3L2	HGNC	ENSG00000144535	tier1			27	0	0.00	26	3	10.34	23	0	0.00	39	2	4.88
