Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
FUT10	0	genome.wustl.edu	37	8	33247235	33247235	+	Missense_Mutation	SNP	T	T	C			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	8	33247235	33247235	T	C	SNP	FUT10	ENST00000327671	human	ensembl	74_37	-1	known	missense	c.458	p.K153R	1.000	pfam_Glyco_trans_10,pirsf_Alpha-1_3-FUT_met	pfam_Glyco_trans_10,pirsf_Alpha-1_3-FUT_met	-	no_errors	FUT10	HGNC	ENSG00000172728	tier1	-	-	42	0	0.00	31	28	47.46	90	0	0.00	51	42	45.16
MTUS1	0	genome.wustl.edu	37	8	17612954	17612954	+	Missense_Mutation	SNP	A	A	C			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	8	17612954	17612954	A	C	SNP	MTUS1	ENST00000262102	human	ensembl	74_37	-1	known	missense	c.363	p.C121W	0.002	NULL	superfamily_Ferritin-like_SF	-	no_errors	MTUS1	HGNC	ENSG00000129422	tier1	-	-	30	0	0.00	25	26	50.98	60	0	0.00	43	32	42.67
BCAR3	0	genome.wustl.edu	37	1	94037299	94037299	+	Silent	SNP	C	C	T			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	1	94037299	94037299	C	T	SNP	BCAR3	ENST00000260502	human	ensembl	74_37	-1	known	silent	c.1902	p.A634	0.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_SH2,pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_SH2,smart_RasGRF_CDC25,pfscan_SH2,pfscan_RasGRF_CDC25	-	no_errors	BCAR3	HGNC	ENSG00000137936	tier1	-	-	26	0	0.00	42	9	17.65	38	0	0.00	71	11	13.41
CALN1	0	genome.wustl.edu	37	7	71252851	71252851	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	7	71252851	71252851	C	T	SNP	CALN1	ENST00000395275	human	ensembl	74_37	-1	known	missense	c.695	p.R232Q	1.000	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CALN1	HGNC	ENSG00000183166	tier1	-	-	31	0	0.00	13	5	26.32	70	0	0.00	35	25	41.67
PTPRK	0	genome.wustl.edu	37	6	128294875	128294875	+	Missense_Mutation	SNP	A	A	T			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	6	128294875	128294875	A	T	SNP	PTPRK	ENST00000368227	human	ensembl	74_37	-1	known	missense	c.4118	p.I1373K	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRK	HGNC	ENSG00000152894	tier1	-	-	25	0	0.00	30	17	36.17	55	0	0.00	50	31	38.27
RHO	0	genome.wustl.edu	37	3	129247673	129247673	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	3	129247673	129247673	G	A	SNP	RHO	ENST00000296271	human	ensembl	74_37	+1	known	missense	c.97	p.E33K	0.999	pfam_Rhodopsin_N,prints_Rhodopsin	pfam_GPCR_Rhodpsn,pfam_Rhodopsin_N,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Rhodopsin,prints_GPCR_Rhodpsn,prints_Opsin	-	no_errors	RHO	HGNC	ENSG00000163914	tier1	-	-	46	0	0.00	13	6	31.58	68	1	1.43	43	22	33.85
DTHD1	0	genome.wustl.edu	37	4	36345327	36345327	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	4	36345327	36345327	C	T	SNP	DTHD1	ENST00000456874	human	ensembl	74_37	+1	known	missense	c.2227	p.L743F	1.000	pfam_Death_domain,superfamily_DEATH-like_dom,pfscan_Death_domain	pfam_Death_domain,superfamily_DEATH-like_dom,pfscan_Death_domain	-	no_errors	DTHD1	HGNC	ENSG00000197057	tier1	-	-	21	0	0.00	22	16	42.11	28	0	0.00	41	30	42.25
AQP4	0	genome.wustl.edu	37	18	24436401	24436401	+	Missense_Mutation	SNP	T	T	C			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	18	24436401	24436401	T	C	SNP	AQP4	ENST00000383168	human	ensembl	74_37	-1	known	missense	c.746	p.E249G	1.000	superfamily_Aquaporin-like,prints_MIP	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,tigrfam_MIP	-	no_errors	AQP4	HGNC	ENSG00000171885	tier1	-	-	28	0	0.00	12	17	58.62	116	0	0.00	85	41	32.54
NOTCH4	0	genome.wustl.edu	37	6	32185035	32185035	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	6	32185035	32185035	C	T	SNP	NOTCH4	ENST00000375023	human	ensembl	74_37	-1	known	missense	c.1633	p.G545S	0.996	pirsf_Notch,pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_Notch,pfam_EG-like_dom,pfam_Ankyrin_rpt,pfam_EGF-like_Ca-bd_dom,pfam_Notch_dom,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_4,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH4	HGNC	ENSG00000204301	tier1	-	-	32	0	0.00	19	9	32.14	49	0	0.00	45	23	33.82
TCOF1	0	genome.wustl.edu	37	5	149753842	149753842	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	5	149753842	149753842	G	T	SNP	TCOF1	ENST00000451292	human	ensembl	74_37	+1	known	missense	c.976	p.V326L	0.000	pfam_TCS_treacle	pfam_TCS_treacle,smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_Treacle-like_TCS	-	no_errors	TCOF1	HGNC	ENSG00000070814	tier1	-	-	54	0	0.00	44	4	8.33	14	0	0.00	14	2	12.50
DPT	0	genome.wustl.edu	37	1	168698150	168698150	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	1	168698150	168698150	G	A	SNP	DPT	ENST00000367817	human	ensembl	74_37	-1	known	missense	c.263	p.T88M	0.808	NULL	NULL	-	no_errors	DPT	HGNC	ENSG00000143196	tier1	rs200918644	GMAF=0.0005	48	0	0.00	21	25	54.35	63	0	0.00	32	16	33.33
CDH19	0	genome.wustl.edu	37	18	64235825	64235825	+	Silent	SNP	A	A	G			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	18	64235825	64235825	A	G	SNP	CDH19	ENST00000262150	human	ensembl	74_37	-1	known	silent	c.318	p.D106	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH19	HGNC	ENSG00000071991	tier1	-	-	15	0	0.00	41	14	25.45	18	0	0.00	55	21	27.63
DHX29	0	genome.wustl.edu	37	5	54586147	54586147	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	5	54586147	54586147	G	A	SNP	DHX29	ENST00000251636	human	ensembl	74_37	-1	known	missense	c.806	p.A269V	0.998	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_D/R_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX29	HGNC	ENSG00000067248	tier1	-	-	44	0	0.00	30	31	50.82	37	0	0.00	41	26	38.81
PARD3B	0	genome.wustl.edu	37	2	206480689	206480689	+	R	SNP	A	A	G			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	2	206480689	206480689	A	G	SNP	PARD3B	ENST00000488622	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.018	-	-	-	no_errors	PARD3B	HGNC	ENSG00000116117	tier1	-	-	9	0	0.00	11	5	31.25	55	0	0.00	39	27	40.91
SERINC1	0	genome.wustl.edu	37	6	122768037	122768037	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	6	122768037	122768037	C	T	SNP	SERINC1	ENST00000339697	human	ensembl	74_37	-1	known	missense	c.1108	p.D370N	0.990	pfam_TMS_TDE	pfam_TMS_TDE	-	no_errors	SERINC1	HGNC	ENSG00000111897	tier1	rs200633097	GMAF=0.0005	35	0	0.00	19	16	45.71	81	0	0.00	56	40	41.67
KIF22	0	genome.wustl.edu	37	16	29808222	29808222	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	16	29808222	29808222	C	T	SNP	KIF22	ENST00000160827	human	ensembl	74_37	+1	known	missense	c.79	p.R27C	0.998	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,superfamily_RuvA_2-like,smart_Kinesin_motor_dom,smart_Hlx-hairpin-Hlx_D-bd_motif,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF22	HGNC	ENSG00000079616	tier1	-	-	30	0	0.00	17	8	32.00	48	0	0.00	29	18	38.30
CSMD1	0	genome.wustl.edu	37	8	3008950	3008950	+	Nonsense_Mutation	SNP	G	G	T			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	8	3008950	3008950	G	T	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	nonsense	c.6003	p.C2001*	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	tier1	-	-	53	0	0.00	64	15	18.99	77	0	0.00	77	12	13.48
KANK2	0	genome.wustl.edu	37	19	11277131	11277131	+	R	SNP	G	G	A			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	19	11277131	11277131	G	A	SNP	KANK2	ENST00000587317	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.275	-	-	-	no_errors	KANK2	HGNC	ENSG00000197256	tier1	-	-	68	0	0.00	20	10	33.33	53	0	0.00	14	20	58.82
SEC14L4	0	genome.wustl.edu	37	22	30890890	30890890	+	Missense_Mutation	SNP	T	T	C			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	22	30890890	30890890	T	C	SNP	SEC14L4	ENST00000255858	human	ensembl	74_37	-1	known	missense	c.482	p.K161R	0.655	pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_GOLD,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,prints_CRAL-bd_toc_tran	-	no_errors	SEC14L4	HGNC	ENSG00000133488	tier1	-	-	27	0	0.00	14	8	36.36	68	0	0.00	59	18	23.38
TP53	0	genome.wustl.edu	37	17	7578271	7578273	+	In_Frame_Del	DEL	TGC	TGC	-			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	TGC	TGC	TGC	-	TGC	TGC	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	17	7578271	7578273	TGC	-	DEL	TP53	ENST00000269305	human	ensembl	74_37	-1	known	in_frame_del	c.578_576	p.Q192in_frame_del	0.998:1.000:0.998	pfam_p53_D-bd,superfamily_p53-like_TF_D-bd	pfam_p53_D-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_D-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1			103	0	0.00	9	26	74.29	155	0	0.00	24	27	52.94
ENSG00000258727	0	genome.wustl.edu	37	14	24030418	24030424	+	R	DEL	CCATGAG	CCATGAG	-			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	CCATGAG	CCATGAG	CCATGAG	-	CCATGAG	CCATGAG	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	14	24030418	24030424	CCATGAG	-	DEL	ENSG00000258727	ENST00000555968	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.000:0.000:0.000	-	-	-	no_errors	RP11-66N24.3	Clone_based_vega_gene	ENSG00000258727	tier1			73	0	0.00	77	20	20.62	73	0	0.00	77	20	20.62
ASB10	0	genome.wustl.edu	37	7	150878106	150878106	+	Missense_Mutation	SNP	G	G	C			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	7	150878106	150878106	G	C	SNP	ASB10	ENST00000422024	human	ensembl	74_37	-1	known	missense	c.1159	p.L387V	0.122	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB10	HGNC	ENSG00000146926	tier1	-	-	72	0	0.00	21	13	38.24	10	0	0.00	6	7	53.85
PAX1	0	genome.wustl.edu	37	20	21687507	21687507	+	Missense_Mutation	SNP	C	C	A			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	20	21687507	21687507	C	A	SNP	PAX1	ENST00000398485	human	ensembl	74_37	+1	known	missense	c.718	p.P240T	1.000	NULL	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX1	HGNC	ENSG00000125813	tier1	-	-	194	0	0.00	8	40	83.33	50	0	0.00	5	15	75.00
PCDHGA9	0	genome.wustl.edu	37	5	140783160	140783160	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	5	140783160	140783160	C	T	SNP	PCDHGA9	ENST00000573521	human	ensembl	74_37	+1	known	missense	c.641	p.A214V	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA9	HGNC	ENSG00000261934	tier1	-	-	72	0	0.00	16	13	44.83	16	0	0.00	0	2	100.00
RB1	0	genome.wustl.edu	37	13	48919300	48919300	+	Nonsense_Mutation	SNP	T	T	A			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	13	48919300	48919300	T	A	SNP	RB1	ENST00000267163	human	ensembl	74_37	+1	known	nonsense	c.465	p.Y155*	0.960	pfam_RB_N	pfam_RB_C,pfam_RB_A,pfam_RB_B,pfam_RB_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	tier1	-	-	54	0	0.00	7	13	65.00	33	0	0.00	4	22	84.62
SETD1A	0	genome.wustl.edu	37	16	30976472	30976472	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	16	30976472	30976472	C	T	SNP	SETD1A	ENST00000262519	human	ensembl	74_37	+1	known	missense	c.1409	p.S470F	1.000	NULL	pfam_COMPASS_Set1_N-SET,pfam_SET_dom,pfam_RRM_dom,smart_RRM_dom,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_RRM_dom	-	no_errors	SETD1A	HGNC	ENSG00000099381	tier1	-	-	70	0	0.00	20	11	33.33	15	0	0.00	8	2	20.00
TMEM51	0	genome.wustl.edu	37	1	15541908	15541908	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	1	15541908	15541908	C	T	SNP	TMEM51	ENST00000376008	human	ensembl	74_37	+1	known	missense	c.325	p.H109Y	0.002	NULL	NULL	-	no_errors	TMEM51	HGNC	ENSG00000171729	tier1	-	-	110	0	0.00	32	28	46.67	23	0	0.00	6	3	33.33
ZNF446	0	genome.wustl.edu	37	19	58991842	58991842	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	19	58991842	58991842	G	A	SNP	ZNF446	ENST00000594369	human	ensembl	74_37	+1	known	missense	c.1102	p.G368R	0.000	NULL	pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF446	HGNC	ENSG00000083838	tier1	-	-	116	0	0.00	21	23	52.27	37	0	0.00	5	4	44.44
ARHGEF12	0	genome.wustl.edu	37	11	120291478	120291478	+	Silent	SNP	C	C	T			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	11	120291478	120291478	C	T	SNP	ARHGEF12	ENST00000356641	human	ensembl	74_37	+1	known	silent	c.159	p.C53	1.000	superfamily_PDZ,pfscan_PDZ	pfam_RGS-like_dom,pfam_DH-domain,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,superfamily_PDZ,smart_PDZ,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF12	HGNC	ENSG00000196914	tier1	rs199795842	GMAF=0.0005	96	0	0.00	76	7	8.43	103	0	0.00	85	7	7.53
SBNO2	0	genome.wustl.edu	37	19	1111506	1111506	+	Silent	SNP	C	C	G			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	19	1111506	1111506	C	G	SNP	SBNO2	ENST00000361757	human	ensembl	74_37	-1	known	silent	c.2808	p.R936	0.991	NULL	superfamily_P-loop_NTPase	-	no_errors	SBNO2	HGNC	ENSG00000064932	tier1	-	-	88	0	0.00	60	13	17.81	47	0	0.00	68	6	8.11
LOC100132891	0	genome.wustl.edu	37	8	72967429	72967436	+	R	DEL	AGAATATT	AGAATATT	-			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	AGAATATT	AGAATATT	AGAATATT	-	AGAATATT	AGAATATT	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	8	72967429	72967436	AGAATATT	-	DEL	LOC100132891	ENST00000457356	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.376:0.321:0.267:0.212:0.159:0.106:0.053:0.000	-	-	-	no_errors	RP11-383H13.1	Clone_based_vega_gene	ENSG00000235531	tier1			12	1	7.69	32	13	28.89	12	1	7.69	32	13	28.89
BRD9	0	genome.wustl.edu	37	5	891803	891805	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	5	891803	891805	CTT	-	DEL	BRD9	ENST00000467963	human	ensembl	74_37	-1	known	in_frame_del	c.219_217	p.K73in_frame_del	0.975:1.000:1.000	NULL	pfam_DUF3512,pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD9	HGNC	ENSG00000028310	tier1			94	0	0.00	16	2	11.11	23	0	0.00	3	0	0.00
CYP11B1	0	genome.wustl.edu	37	8	143956378	143956380	+	In_Frame_Del	DEL	GCA	GCA	-			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	GCA	GCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	8	143956378	143956380	GCA	-	DEL	CYP11B1	ENST00000292427	human	ensembl	74_37	-1	known	in_frame_del	c.1393_1391	p.L464in_frame_del	1.000:1.000:1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_mitochondrial,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B,prints_Cyt_P450	-	no_errors	CYP11B1	HGNC	ENSG00000160882	tier1			78	0	0.00	30	4	11.76	6	0	0.00	5	0	0.00
EMC7	0	genome.wustl.edu	37	15	34393991	34393993	+	In_Frame_Del	DEL	AGC	AGC	-			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	AGC	AGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	15	34393991	34393993	AGC	-	DEL	EMC7	ENST00000256545	human	ensembl	74_37	-1	known	in_frame_del	c.50_48	p.L17in_frame_del	0.275:0.430:0.449	NULL	pfam_DUF2012,superfamily_Carb-bd-like_fold	-	no_errors	EMC7	HGNC	ENSG00000134153	tier1			47	0	0.00	14	2	12.50	11	0	0.00	8	0	0.00
ZNF395	0	genome.wustl.edu	37	8	28207583	28207584	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	8	28207583	28207584	GA	-	DEL	ZNF395	ENST00000344423	human	ensembl	74_37	-1	known	frame_shift_del	c.1324_1323	p.P442fs	1.000:0.971	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF395	HGNC	ENSG00000186918	tier1			45	0	0.00	18	3	14.29	9	0	0.00	4	0	0.00
DMRTB1	0	genome.wustl.edu	37	1	53925373	53925374	+	In_Frame_Ins	INS	-	-	CCGCCC			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	1	53925373	53925374	-	CCGCCC	INS	DMRTB1	ENST00000371445	human	ensembl	74_37	+1	known	in_frame_ins	c.247_248	p.87in_frame_insPA	0.002:0.001	NULL	pfam_DM_D-bd,superfamily_DM_D-bd,smart_DM_D-bd,pfscan_DM_D-bd	-	no_errors	DMRTB1	HGNC	ENSG00000143006	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
ENSG00000221704	0	genome.wustl.edu	37	2	236480576	236480577	+	R	INS	-	-	TGTGTGTGTGTG			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	2	236480576	236480577	-	TGTGTGTGTGTG	INS	ENSG00000221704	ENST00000408777	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.083:0.055	-	-	-	no_errors	AC012305.1	Clone_based_ensembl_gene	ENSG00000221704	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
KRT18	0	genome.wustl.edu	37	12	53343288	53343288	+	Frame_Shift_Del	DEL	A	A	-			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	12	53343288	53343288	A	-	DEL	KRT18	ENST00000388835	human	ensembl	74_37	+1	known	frame_shift_del	c.331	p.I112fs	1.000	pfam_IF	pfam_IF,prints_Keratin_I	-	no_errors	KRT18	HGNC	ENSG00000111057	tier1			53	0	0.00	21	2	8.70	0	0	0.00	0	0	0.00
RRAGD	0	genome.wustl.edu	37	6	90121645	90121647	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	6	90121645	90121647	TCC	-	DEL	RRAGD	ENST00000369415	human	ensembl	74_37	-1	known	in_frame_del	c.68_66	p.E22in_frame_del	0.998:1.000:0.999	NULL	pfam_Gtr1_RagA,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase	-	no_errors	RRAGD	HGNC	ENSG00000025039	tier1			39	0	0.00	18	2	10.00	2	0	0.00	1	0	0.00
DPP10	0	genome.wustl.edu	37	2	116510794	116510794	+	Missense_Mutation	SNP	C	C	A			TCGA-3B-A9I0-01A-11D-A38Z-09	TCGA-3B-A9I0-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	69ead7c3-30d8-4812-ab42-1b53baf2b5ae	fa1a7e55-1d0b-430d-88b4-c845358435dc	2	116510794	116510794	C	A	SNP	DPP10	ENST00000393147	human	ensembl	74_37	+1	known	missense	c.1007	p.T336N	0.969	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	DPP10	HGNC	ENSG00000175497	tier1	-	-	62	0	0.00	91	9	9.00	48	0	0.00	101	3	2.88
