Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
KLC3	0	genome.wustl.edu	37	19	45849840	45849840	+	Missense_Mutation	SNP	G	G	T			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	19	45849840	45849840	G	T	SNP	KLC3	ENST00000470402	human	ensembl	74_37	+1	known	missense	c.339	p.E113D	1.000	pfam_Rabaptin_Rab5-bd_dom	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Kinesin_light	-	no_errors	KLC3	HGNC	ENSG00000104892	tier1	-	-	26	0	0.00	4	16	80.00	9	0	0.00	11	6	35.29
DMD	0	genome.wustl.edu	37	X	32407760	32407760	+	Missense_Mutation	SNP	C	C	T			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	X	32407760	32407760	C	T	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	missense	c.4376	p.R1459Q	1.000	pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	tier1	-	-	35	0	0.00	0	11	100.00	63	0	0.00	21	29	58.00
ERC2	0	genome.wustl.edu	37	3	55542496	55542496	+	R	SNP	T	T	C			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	3	55542496	55542496	T	C	SNP	ERC2	ENST00000486496	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ERC2	HGNC	ENSG00000187672	tier1	-	-	34	0	0.00	27	5	15.62	116	0	0.00	81	14	14.74
CENPE	0	genome.wustl.edu	37	4	104070553	104070553	+	Missense_Mutation	SNP	G	G	C			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	4	104070553	104070553	G	C	SNP	CENPE	ENST00000265148	human	ensembl	74_37	-1	known	missense	c.3409	p.Q1137E	0.998	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778	tier1	-	-	49	0	0.00	10	5	33.33	100	0	0.00	44	25	36.23
GCN1L1	0	genome.wustl.edu	37	12	120569000	120569000	+	Missense_Mutation	SNP	T	T	C			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	12	120569000	120569000	T	C	SNP	GCN1L1	ENST00000300648	human	ensembl	74_37	-1	known	missense	c.7552	p.T2518A	0.978	superfamily_ARM-type_fold	pfam_DUF3554,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	GCN1L1	HGNC	ENSG00000089154	tier1	-	-	64	0	0.00	17	11	39.29	96	0	0.00	71	23	24.47
GALK1	0	genome.wustl.edu	37	17	73759480	73759480	+	Silent	SNP	T	T	G			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	17	73759480	73759480	T	G	SNP	GALK1	ENST00000437911	human	ensembl	74_37	-1	known	silent	c.486	p.S162	0.994	pfam_GHMP_kinase_N_dom,superfamily_Ribosomal_S5_D2-typ_fold,pirsf_Galactokinase,prints_Mevalonate/galactokinase,prints_Galactokinase,prints_Galkinase,tigrfam_Galactokinase	pfam_GalKase_gal-bd,pfam_GHMP_kinase_C_dom,pfam_GHMP_kinase_N_dom,superfamily_Ribosomal_S5_D2-typ_fold,pirsf_Galactokinase,prints_Mevalonate/galactokinase,prints_Galactokinase,prints_Galkinase,tigrfam_Galactokinase	-	no_errors	GALK1	HGNC	ENSG00000108479	tier1	-	-	78	0	0.00	57	22	27.85	42	0	0.00	44	17	27.87
MORC1	0	genome.wustl.edu	37	3	108698399	108698399	+	Missense_Mutation	SNP	C	C	G			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	3	108698399	108698399	C	G	SNP	MORC1	ENST00000232603	human	ensembl	74_37	-1	known	missense	c.2440	p.V814L	0.331	NULL	pfam_Znf_CW,superfamily_HATPase_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC1	HGNC	ENSG00000114487	tier1	-	-	39	0	0.00	16	4	20.00	98	0	0.00	82	24	22.64
KLHL21	0	genome.wustl.edu	37	1	6659372	6659372	+	Missense_Mutation	SNP	C	C	A			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	1	6659372	6659372	C	A	SNP	KLHL21	ENST00000377658	human	ensembl	74_37	-1	known	missense	c.1162	p.A388S	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL21	HGNC	ENSG00000162413	tier1	-	-	15	0	0.00	18	8	30.77	18	0	0.00	20	5	20.00
TMA16	0	genome.wustl.edu	37	4	164415938	164415938	+	R	SNP	C	C	T			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	4	164415938	164415938	C	T	SNP	TMA16	ENST00000511562	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	TMA16	HGNC	ENSG00000198498	tier1	-	-	119	0	0.00	49	7	12.50	53	0	0.00	29	7	19.44
PARVB	0	genome.wustl.edu	37	22	44395249	44395249	+	Missense_Mutation	SNP	G	G	T			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	22	44395249	44395249	G	T	SNP	PARVB	ENST00000406477	human	ensembl	74_37	+1	known	missense	c.29	p.R10I	0.000	NULL	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	PARVB	HGNC	ENSG00000188677	tier1	-	-	77	0	0.00	39	8	17.02	149	0	0.00	114	40	25.97
PCDHB8	0	genome.wustl.edu	37	5	140559053	140559053	+	Missense_Mutation	SNP	G	G	C			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	5	140559053	140559053	G	C	SNP	PCDHB8	ENST00000239444	human	ensembl	74_37	+1	known	missense	c.1438	p.D480H	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB8	HGNC	ENSG00000120322	tier1	-	-	651	0	0.00	423	54	11.30	13	0	0.00	15	3	16.67
C3orf55	0	genome.wustl.edu	37	3	157318113	157318113	+	Silent	SNP	C	C	T			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	3	157318113	157318113	C	T	SNP	C3orf55	ENST00000426338	human	ensembl	74_37	+1	known	silent	c.345	p.Y115	0.000	NULL	NULL	-	no_errors	C3orf55	HGNC	ENSG00000174899	tier1	-	-	64	0	0.00	29	29	50.00	138	0	0.00	101	48	32.21
LMF2	0	genome.wustl.edu	37	22	50942780	50942780	+	Silent	SNP	A	A	C			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	22	50942780	50942780	A	C	SNP	LMF2	ENST00000474879	human	ensembl	74_37	-1	known	silent	c.1707	p.P569	0.927	pfam_LMF	pfam_LMF	-	no_errors	LMF2	HGNC	ENSG00000100258	tier1	-	-	165	0	0.00	64	45	40.54	18	0	0.00	15	10	40.00
PTP4A1	0	genome.wustl.edu	37	6	64286413	64286413	+	Missense_Mutation	SNP	C	C	T			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	6	64286413	64286413	C	T	SNP	PTP4A1	ENST00000578299	human	ensembl	74_37	+1	putative	missense	c.112	p.H38Y	1.000	NULL	NULL	-	no_errors	PTP4A1	HGNC	ENSG00000112245	tier1	-	-	49	0	0.00	17	11	39.29	35	0	0.00	29	26	47.27
SMARCA2	0	genome.wustl.edu	37	9	2104085	2104085	+	Missense_Mutation	SNP	C	C	A			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	9	2104085	2104085	C	A	SNP	SMARCA2	ENST00000349721	human	ensembl	74_37	+1	known	missense	c.3208	p.L1070M	1.000	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_D-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_D-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503	tier1	-	-	82	0	0.00	23	42	64.62	91	0	0.00	31	86	73.50
COL4A4	0	genome.wustl.edu	37	2	227872807	227872807	+	Missense_Mutation	SNP	T	T	C			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	2	227872807	227872807	T	C	SNP	COL4A4	ENST00000396625	human	ensembl	74_37	-1	known	missense	c.4736	p.H1579R	1.000	pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A4	HGNC	ENSG00000081052	tier1	-	-	84	0	0.00	30	6	16.67	22	0	0.00	12	4	25.00
PIPSL	0	genome.wustl.edu	37	10	95719666	95719666	+	R	SNP	G	G	A			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	10	95719666	95719666	G	A	SNP	PIPSL	ENST00000480546	human	ensembl	74_37	-1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	PIPSL	HGNC	ENSG00000180764	tier1	-	-	106	0	0.00	52	18	25.35	146	0	0.00	106	27	20.30
MRGPRG-AS1	0	genome.wustl.edu	37	11	3243183	3243183	+	R	SNP	C	C	G			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	11	3243183	3243183	C	G	SNP	MRGPRG-AS1	ENST00000420873	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MRGPRG-AS1	HGNC	ENSG00000236301	tier1	-	-	85	0	0.00	42	26	38.24	60	0	0.00	42	35	45.45
RABGGTB	0	genome.wustl.edu	37	1	76255463	76255463	+	R	SNP	G	G	C			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	1	76255463	76255463	G	C	SNP	RABGGTB	ENST00000461653	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RABGGTB	HGNC	ENSG00000137955	tier1	-	-	14	0	0.00	13	5	27.78	84	0	0.00	94	15	13.64
DH11	0	genome.wustl.edu	37	7	21940719	21940719	+	Silent	SNP	C	C	T			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	7	21940719	21940719	C	T	SNP	DH11	ENST00000328843	human	ensembl	74_37	+1	known	silent	c.13419	p.P4473	0.017	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DH11	HGNC	ENSG00000105877	tier1	rs72658836	-	52	0	0.00	20	15	42.86	53	0	0.00	55	23	29.49
CADPS	0	genome.wustl.edu	37	3	62578348	62578348	+	Silent	SNP	T	T	C			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	3	62578348	62578348	T	C	SNP	CADPS	ENST00000383710	human	ensembl	74_37	-1	known	silent	c.1401	p.T467	0.729	superfamily_C2_dom	pfam_Ca-dep_secretion_activator,superfamily_C2_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	CADPS	HGNC	ENSG00000163618	tier1	-	-	53	0	0.00	42	9	17.65	100	0	0.00	111	33	22.92
PGM5	0	genome.wustl.edu	37	9	70999430	70999430	+	Missense_Mutation	SNP	G	G	C			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	9	70999430	70999430	G	C	SNP	PGM5	ENST00000396396	human	ensembl	74_37	+1	known	missense	c.541	p.D181H	1.000	superfamily_A-D-PHexomutase_a/b/a-I/II/III	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_a/b/a-II,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM5	HGNC	ENSG00000154330	tier1	-	-	126	0	0.00	112	10	8.20	67	0	0.00	86	13	13.13
OR4C16	0	genome.wustl.edu	37	11	55340374	55340374	+	Silent	SNP	A	A	C			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	11	55340374	55340374	A	C	SNP	OR4C16	ENST00000314634	human	ensembl	74_37	+1	known	silent	c.771	p.T257	0.002	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C16	HGNC	ENSG00000181935	tier1	-	-	100	0	0.00	46	72	61.02	112	0	0.00	71	198	73.61
FRS2	0	genome.wustl.edu	37	12	69964267	69964267	+	Missense_Mutation	SNP	G	G	A			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	12	69964267	69964267	G	A	SNP	FRS2	ENST00000299293	human	ensembl	74_37	+1	known	missense	c.223	p.E75K	1.000	pfam_Insln_rcpt_S1,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	pfam_Insln_rcpt_S1,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	FRS2	HGNC	ENSG00000166225	tier1	-	-	63	0	0.00	280	31	9.97	109	0	0.00	566	96	14.50
TRIML2	0	genome.wustl.edu	37	4	189026407	189026407	+	Missense_Mutation	SNP	C	C	A			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	4	189026407	189026407	C	A	SNP	TRIML2	ENST00000536972	human	ensembl	74_37	-1	known	missense	c.116	p.S39I	0.000	pfam_Znf_B-box,pfscan_Znf_B-box	pfam_Znf_B-box,pfscan_Znf_B-box	-	no_errors	TRIML2	HGNC	ENSG00000179046	tier1	-	-	67	0	0.00	22	7	24.14	85	0	0.00	30	32	50.79
ELOVL7	0	genome.wustl.edu	37	5	60062402	60062402	+	Missense_Mutation	SNP	G	G	A			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	5	60062402	60062402	G	A	SNP	ELOVL7	ENST00000425382	human	ensembl	74_37	-1	known	missense	c.392	p.T131M	1.000	pfam_GNS1_SUR4	pfam_GNS1_SUR4	-	no_errors	ELOVL7	HGNC	ENSG00000164181	tier1	-	-	72	0	0.00	34	8	19.05	129	0	0.00	99	12	10.81
ZFP69	0	genome.wustl.edu	37	1	40960772	40960772	+	Missense_Mutation	SNP	G	G	A			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	1	40960772	40960772	G	A	SNP	ZFP69	ENST00000372705	human	ensembl	74_37	+1	known	missense	c.622	p.D208N	0.006	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,superfamily_Retrov_capsid_C,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP69	HGNC	ENSG00000187815	tier1	-	-	71	0	0.00	29	14	32.56	100	0	0.00	72	63	46.67
GRAMD2	0	genome.wustl.edu	37	15	72459382	72459382	+	Missense_Mutation	SNP	G	G	A			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	15	72459382	72459382	G	A	SNP	GRAMD2	ENST00000309731	human	ensembl	74_37	-1	known	missense	c.424	p.R142W	0.731	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD2	HGNC	ENSG00000175318	tier1	rs141536149	-	93	0	0.00	37	13	26.00	92	0	0.00	45	35	43.75
GLIPR1L1	0	genome.wustl.edu	37	12	75728540	75728540	+	Nonsense_Mutation	SNP	G	G	A			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	12	75728540	75728540	G	A	SNP	GLIPR1L1	ENST00000378695	human	ensembl	74_37	+1	known	nonsense	c.32	p.W11*	0.980	NULL	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1,prints_V5_allergen	-	no_errors	GLIPR1L1	HGNC	ENSG00000173401	tier1	-	-	79	0	0.00	136	39	22.29	139	0	0.00	301	78	20.58
GBP1	0	genome.wustl.edu	37	1	89520439	89520439	+	Missense_Mutation	SNP	G	G	T			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	1	89520439	89520439	G	T	SNP	GBP1	ENST00000370473	human	ensembl	74_37	-1	known	missense	c.1591	p.L531M	0.003	pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	pfam_Guanylate-bd_C,pfam_Guanylate-bd_N,superfamily_Guanylate-bd_C,superfamily_P-loop_NTPase	-	no_errors	GBP1	HGNC	ENSG00000117228	tier1	-	-	65	0	0.00	34	5	12.82	112	0	0.00	85	12	12.37
RNF216	0	genome.wustl.edu	37	7	5780626	5780626	+	Missense_Mutation	SNP	A	A	G			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	7	5780626	5780626	A	G	SNP	RNF216	ENST00000389902	human	ensembl	74_37	-1	known	missense	c.1022	p.V341A	0.960	NULL	smart_Znf_C6HC	-	no_errors	RNF216	HGNC	ENSG00000011275	tier1	-	-	40	0	0.00	11	14	56.00	107	0	0.00	38	34	47.22
LRRC53	0	genome.wustl.edu	37	1	74946127	74946127	+	Missense_Mutation	SNP	T	T	C			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	1	74946127	74946127	T	C	SNP	LRRC53	ENST00000294635	human	ensembl	74_37	-1	novel	missense	c.614	p.Q205R	0.621	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC53	HGNC	ENSG00000162621	tier1	-	-	34	0	0.00	28	15	34.09	139	0	0.00	72	63	46.67
NBEAL1	0	genome.wustl.edu	37	2	203972519	203972519	+	Silent	SNP	G	G	T			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	2	203972519	203972519	G	T	SNP	NBEAL1	ENST00000449802	human	ensembl	74_37	+1	known	silent	c.1470	p.G490	0.910	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL1	HGNC	ENSG00000144426	tier1	-	-	89	0	0.00	27	22	44.90	142	0	0.00	90	34	27.20
MKI67	0	genome.wustl.edu	37	10	129914188	129914188	+	Missense_Mutation	SNP	C	C	T			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	10	129914188	129914188	C	T	SNP	MKI67	ENST00000368654	human	ensembl	74_37	-1	known	missense	c.484	p.V162I	0.000	NULL	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773	tier1	-	-	57	0	0.00	25	6	19.35	106	0	0.00	66	20	23.26
DOCK3	0	genome.wustl.edu	37	3	51315040	51315040	+	Missense_Mutation	SNP	A	A	T			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	3	51315040	51315040	A	T	SNP	DOCK3	ENST00000266037	human	ensembl	74_37	+1	known	missense	c.2678	p.E893V	1.000	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538	tier1	-	-	42	0	0.00	15	5	25.00	53	0	0.00	39	13	25.00
OBSCN	0	genome.wustl.edu	37	1	228466604	228466604	+	Silent	SNP	C	C	T			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	1	228466604	228466604	C	T	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	silent	c.7074	p.T2358	0.286	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	tier1	-	-	64	0	0.00	33	19	36.54	90	0	0.00	39	13	25.00
FAM160A1	0	genome.wustl.edu	37	4	152498908	152498908	+	Missense_Mutation	SNP	C	C	A			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	4	152498908	152498908	C	A	SNP	FAM160A1	ENST00000435205	human	ensembl	74_37	+1	known	missense	c.412	p.P138T	1.000	pfam_RetinoicA-induced_16-like	pfam_RetinoicA-induced_16-like	-	no_errors	FAM160A1	HGNC	ENSG00000164142	tier1	-	-	63	0	0.00	19	9	32.14	100	0	0.00	53	11	17.19
DAPK2	0	genome.wustl.edu	37	15	64204333	64204333	+	Missense_Mutation	SNP	T	T	C			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	15	64204333	64204333	T	C	SNP	DAPK2	ENST00000261891	human	ensembl	74_37	-1	known	missense	c.922	p.K308E	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DAPK2	HGNC	ENSG00000035664	tier1	-	-	70	0	0.00	22	15	40.54	94	0	0.00	34	15	30.61
ZFP41	0	genome.wustl.edu	37	8	144332442	144332442	+	Missense_Mutation	SNP	C	C	A			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	8	144332442	144332442	C	A	SNP	ZFP41	ENST00000330701	human	ensembl	74_37	+1	known	missense	c.429	p.F143L	0.005	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP41	HGNC	ENSG00000181638	tier1	-	-	29	0	0.00	25	15	37.50	93	0	0.00	88	44	33.33
DLX1	0	genome.wustl.edu	37	2	172950416	172950416	+	Missense_Mutation	SNP	C	C	G			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	2	172950416	172950416	C	G	SNP	DLX1	ENST00000361725	human	ensembl	74_37	+1	known	missense	c.11	p.T4S	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DLX1	HGNC	ENSG00000144355	tier1	-	-	75	0	0.00	44	5	10.20	153	0	0.00	142	25	14.97
KCTD10	0	genome.wustl.edu	37	12	109895815	109895816	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	AA	AA	AA	-	AA	AA	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	12	109895815	109895816	AA	-	DEL	KCTD10	ENST00000228495	human	ensembl	74_37	-1	known	frame_shift_del	c.456_455	p.L152fs	0.921:1.000	NULL	pfam_T1-type_BTB,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	KCTD10	HGNC	ENSG00000110906	tier1			70	0	0.00	34	10	22.73	161	0	0.00	102	26	20.31
PABPC3	0	genome.wustl.edu	37	13	25671937	25671937	+	Missense_Mutation	SNP	T	T	A			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	13	25671937	25671937	T	A	SNP	PABPC3	ENST00000281589	human	ensembl	74_37	+1	known	missense	c.1601	p.V534E	1.000	superfamily_PABP_HYD,tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC3	HGNC	ENSG00000151846	tier1	-	-	95	0	0.00	14	29	65.91	23	0	0.00	4	17	80.95
TMEM123	0	genome.wustl.edu	37	11	102323281	102323281	+	Missense_Mutation	SNP	G	G	A			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	11	102323281	102323281	G	A	SNP	TMEM123	ENST00000398136	human	ensembl	74_37	-1	known	missense	c.74	p.A25V	0.006	NULL	NULL	-	no_errors	TMEM123	HGNC	ENSG00000152558	tier1	-	-	27	0	0.00	2	6	75.00	5	0	0.00	0	2	100.00
DOCK7	0	genome.wustl.edu	37	1	63009394	63009394	+	Missense_Mutation	SNP	C	C	G			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	1	63009394	63009394	C	G	SNP	DOCK7	ENST00000251157	human	ensembl	74_37	-1	known	missense	c.2882	p.R961P	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,superfamily_ARM-type_fold	-	no_errors	DOCK7	HGNC	ENSG00000116641	tier1	-	-	68	0	0.00	50	6	10.71	129	0	0.00	157	14	8.14
KCNH8	0	genome.wustl.edu	37	3	19492831	19492831	+	Missense_Mutation	SNP	C	C	T			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	3	19492831	19492831	C	T	SNP	KCNH8	ENST00000328405	human	ensembl	74_37	+1	known	missense	c.1760	p.A587V	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,pfam_PAS_4,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,superfamily_tR-bd_arm,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_EAG,tigrfam_PAS	-	no_errors	KCNH8	HGNC	ENSG00000183960	tier1	-	-	63	0	0.00	46	5	9.80	99	0	0.00	116	6	4.92
SSH3	0	genome.wustl.edu	37	11	67075389	67075389	+	Silent	SNP	G	G	A			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	11	67075389	67075389	G	A	SNP	SSH3	ENST00000308127	human	ensembl	74_37	+1	known	silent	c.864	p.L288	1.000	pfam_DEK_C	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH3	HGNC	ENSG00000172830	tier1	-	-	64	0	0.00	91	9	9.00	70	0	0.00	148	12	7.50
MYH7	0	genome.wustl.edu	37	14	23898537	23898537	+	Nonsense_Mutation	SNP	G	G	T			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	14	23898537	23898537	G	T	SNP	MYH7	ENST00000355349	human	ensembl	74_37	-1	known	nonsense	c.1158	p.Y386*	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054	tier1	-	-	35	0	0.00	24	4	14.29	92	0	0.00	91	10	9.90
SSH3	0	genome.wustl.edu	37	11	67075390	67075390	+	Missense_Mutation	SNP	G	G	A			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	11	67075390	67075390	G	A	SNP	SSH3	ENST00000308127	human	ensembl	74_37	+1	known	missense	c.865	p.E289K	1.000	pfam_DEK_C	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH3	HGNC	ENSG00000172830	tier1	-	-	68	0	0.00	92	9	8.91	68	0	0.00	146	12	7.59
CARD14	0	genome.wustl.edu	37	17	78169122	78169122	+	Missense_Mutation	SNP	T	T	C			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	17	78169122	78169122	T	C	SNP	CARD14	ENST00000344227	human	ensembl	74_37	+1	known	missense	c.1489	p.W497R	0.075	NULL	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,superfamily_PDZ,pfscan_CARD,pfscan_PDZ,pfscan_Guanylate_kin-like	-	no_errors	CARD14	HGNC	ENSG00000141527	tier1	-	-	75	0	0.00	79	8	9.20	71	0	0.00	76	7	8.43
SPATA18	0	genome.wustl.edu	37	4	52948721	52948721	+	Silent	SNP	T	T	A			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	4	52948721	52948721	T	A	SNP	SPATA18	ENST00000505320	human	ensembl	74_37	+1	known	silent	c.1524	p.I508	0.986	NULL	NULL	-	no_errors	SPATA18	HGNC	ENSG00000163071	tier1	-	-	63	0	0.00	33	4	10.81	142	0	0.00	183	16	8.04
PDE11A	0	genome.wustl.edu	37	2	178592479	178592479	+	Nonsense_Mutation	SNP	C	C	T			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	2	178592479	178592479	C	T	SNP	PDE11A	ENST00000286063	human	ensembl	74_37	-1	known	nonsense	c.1950	p.W650*	1.000	NULL	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE11A	HGNC	ENSG00000128655	tier1	-	-	79	0	0.00	54	6	10.00	148	0	0.00	101	11	9.82
SDHAP3	0	genome.wustl.edu	37	5	1589412	1589412	+	R	SNP	A	A	G			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	5	1589412	1589412	A	G	SNP	SDHAP3	ENST00000436493	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SDHAP3	HGNC	ENSG00000185986	tier1	-	-	111	0	0.00	63	8	11.27	103	0	0.00	92	4	4.17
ATP13A4	0	genome.wustl.edu	37	3	193130047	193130047	+	Missense_Mutation	SNP	A	A	C			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	3	193130047	193130047	A	C	SNP	ATP13A4	ENST00000342695	human	ensembl	74_37	-1	known	missense	c.3128	p.F1043C	1.000	tigrfam_ATPase_P-typ_Cation_typ_V	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_Cation_typ_V,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A4	HGNC	ENSG00000127249	tier1	-	-	65	0	0.00	64	10	13.51	144	0	0.00	149	15	9.09
ZNF341	0	genome.wustl.edu	37	20	32346565	32346565	+	Silent	SNP	T	T	C			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	20	32346565	32346565	T	C	SNP	ZNF341	ENST00000375200	human	ensembl	74_37	+1	known	silent	c.981	p.C327	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF341	HGNC	ENSG00000131061	tier1	-	-	41	0	0.00	31	4	11.43	35	0	0.00	51	5	8.93
GLIPR1L1	0	genome.wustl.edu	37	12	75728541	75728541	+	Missense_Mutation	SNP	G	G	T			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	12	75728541	75728541	G	T	SNP	GLIPR1L1	ENST00000378695	human	ensembl	74_37	+1	known	missense	c.33	p.W11C	0.964	NULL	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1,prints_V5_allergen	-	no_errors	GLIPR1L1	HGNC	ENSG00000173401	tier1	-	-	78	0	0.00	136	38	21.84	138	2	1.43	300	77	20.42
BNIP3L	0	genome.wustl.edu	37	8	26240684	26240686	+	In_Frame_Del	DEL	ACA	ACA	-			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	ACA	ACA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	8	26240684	26240686	ACA	-	DEL	BNIP3L	ENST00000380629	human	ensembl	74_37	+1	known	in_frame_del	c.38_40	p.N17in_frame_del	0.999:1.000:1.000	NULL	pfam_BNIP3	-	no_errors	BNIP3L	HGNC	ENSG00000104765	tier1			33	0	0.00	16	2	11.11	17	0	0.00	7	0	0.00
LHFPL4	0	genome.wustl.edu	37	3	9594382	9594384	+	R	DEL	CGG	CGG	-			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	CGG	CGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	3	9594382	9594384	CGG	-	DEL	LHFPL4	ENST00000498277	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000:1.000:1.000	-	-	-	no_errors	LHFPL4	HGNC	ENSG00000156959	tier1			27	0	0.00	22	2	8.33	14	0	0.00	8	0	0.00
SOX12	0	genome.wustl.edu	37	20	307372	307372	+	Silent	SNP	C	C	T			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	20	307372	307372	C	T	SNP	SOX12	ENST00000342665	human	ensembl	74_37	+1	known	silent	c.804	p.S268	1.000	pirsf_SOX-12/11/4a	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pirsf_SOX-12/11/4a,pfscan_HMG_box_dom	-	no_errors	SOX12	HGNC	ENSG00000177732	tier1	-	-	35	0	0.00	20	7	25.93	7	0	0.00	2	0	0.00
DCAF12L2	0	genome.wustl.edu	37	X	125299630	125299630	+	Missense_Mutation	SNP	T	T	C			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	X	125299630	125299630	T	C	SNP	DCAF12L2	ENST00000360028	human	ensembl	74_37	-1	known	missense	c.278	p.D93G	0.382	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12L2	HGNC	ENSG00000198354	tier1	-	-	46	0	0.00	18	8	30.77	1	0	0.00	1	0	0.00
MTMR12	0	genome.wustl.edu	37	5	32312936	32312936	+	Frame_Shift_Del	DEL	C	C	-			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	5	32312936	32312936	C	-	DEL	MTMR12	ENST00000382142	human	ensembl	74_37	-1	known	frame_shift_del	c.9	p.G5fs	1.000	NULL	pfam_Myotubularin_assoc	-	no_errors	MTMR12	HGNC	ENSG00000150712	tier1			19	0	0.00	9	2	18.18	3	0	0.00	4	0	0.00
PCDHB4	0	genome.wustl.edu	37	5	140503455	140503455	+	Silent	SNP	C	C	A			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	5	140503455	140503455	C	A	SNP	PCDHB4	ENST00000194152	human	ensembl	74_37	+1	known	silent	c.1875	p.T625	0.002	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB4	HGNC	ENSG00000081818	tier1	-	-	185	0	0.00	110	20	15.38	0	0	0.00	0	0	0.00
PRDM6	0	genome.wustl.edu	37	5	122425971	122425972	+	In_Frame_Ins	INS	-	-	CCTCCGCCT			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	5	122425971	122425972	-	CCTCCGCCT	INS	PRDM6	ENST00000407847	human	ensembl	74_37	+1	known	in_frame_ins	c.262_263	p.92in_frame_insSAS	0.997:1.000	NULL	pfam_Znf_C2H2,pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM6	HGNC	ENSG00000061455	tier1			2	0	0.00	3	0	0.00	2	0	0.00	3	0	0.00
NUDT17	0	genome.wustl.edu	37	1	145588455	145588455	+	Missense_Mutation	SNP	G	G	T			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	1	145588455	145588455	G	T	SNP	NUDT17	ENST00000334513	human	ensembl	74_37	-1	known	missense	c.418	p.L140I	0.064	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	NUDT17	HGNC	ENSG00000186364	tier1	-	-	53	0	0.00	44	4	8.33	81	0	0.00	132	2	1.49
CTN3	0	genome.wustl.edu	37	10	68139076	68139076	+	Silent	SNP	G	G	T			TCGA-3R-A8YX-01A-11D-A37C-09	TCGA-3R-A8YX-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1b8bbbbc-18c8-4599-8f06-6963740cb2ed	e26d0fc4-07ec-4e1d-816c-6d4df7e3996c	10	68139076	68139076	G	T	SNP	CTN3	ENST00000373744	human	ensembl	74_37	-1	known	silent	c.1566	p.I522	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTN3	HGNC	ENSG00000183230	tier1	-	-	57	0	0.00	38	4	9.52	85	0	0.00	94	2	2.08
