Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
GABRG3	0	genome.wustl.edu	37	15	27572085	27572085	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	15	27572085	27572085	C	T	SNP	GABRG3	ENST00000333743	human	ensembl	74_37	+1	known	missense	c.400	p.R134C	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Neur_channel,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg3_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG3	HGNC	ENSG00000182256	tier1	-	-	62	0	0.00	42	20	32.26	99	0	0.00	53	46	46.46
PCDHA12	0	genome.wustl.edu	37	5	140256478	140256478	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	5	140256478	140256478	T	C	SNP	PCDHA12	ENST00000398631	human	ensembl	74_37	+1	known	missense	c.1421	p.I474T	0.997	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA12	HGNC	ENSG00000251664	tier1	-	-	195	0	0.00	128	32	20.00	18	0	0.00	23	3	11.54
KLK13	0	genome.wustl.edu	37	19	51560014	51560014	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	19	51560014	51560014	G	C	SNP	KLK13	ENST00000595793	human	ensembl	74_37	-1	known	missense	c.664	p.L222V	1.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK13	HGNC	ENSG00000167759	tier1	-	-	37	0	0.00	25	15	37.50	38	0	0.00	23	4	13.33
ZNF267	0	genome.wustl.edu	37	16	31927606	31927606	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	16	31927606	31927606	G	T	SNP	ZNF267	ENST00000300870	human	ensembl	74_37	+1	known	missense	c.2036	p.R679L	0.086	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF267	HGNC	ENSG00000185947	tier1	-	-	40	0	0.00	34	5	12.82	47	0	0.00	52	15	22.39
BSDC1	0	genome.wustl.edu	37	1	32846818	32846818	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	1	32846818	32846818	C	T	SNP	BSDC1	ENST00000341071	human	ensembl	74_37	-1	known	missense	c.460	p.D154N	1.000	NULL	pfam_BSD,smart_BSD,pfscan_BSD	-	no_errors	BSDC1	HGNC	ENSG00000160058	tier1	-	-	51	0	0.00	49	7	12.50	121	0	0.00	103	18	14.63
MYH4	0	genome.wustl.edu	37	17	10347962	10347962	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	17	10347962	10347962	G	T	SNP	MYH4	ENST00000255381	human	ensembl	74_37	-1	known	missense	c.5626	p.Q1876K	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_tR-bd_arm,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH4	HGNC	ENSG00000264424	tier1	-	-	78	0	0.00	84	11	11.58	81	1	1.22	79	16	16.84
C4orf50	0	genome.wustl.edu	37	4	5990841	5990841	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	4	5990841	5990841	C	G	SNP	C4orf50	ENST00000531445	human	ensembl	74_37	-1	known	missense	c.658	p.D220H	0.014	NULL	NULL	-	no_errors	C4orf50	HGNC	ENSG00000181215	tier1	-	-	65	0	0.00	48	14	22.58	49	0	0.00	31	4	11.11
RSEK	0	genome.wustl.edu	37	17	6915970	6915970	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	17	6915970	6915970	C	T	SNP	RSEK	ENST00000548577	human	ensembl	74_37	+1	known	missense	c.85	p.L29F	0.001	NULL	NULL	-	no_errors	RSEK	HGNC	ENSG00000219200	tier1	-	-	107	0	0.00	71	42	37.17	48	0	0.00	28	19	40.43
FLRT3	0	genome.wustl.edu	37	20	14306856	14306856	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	20	14306856	14306856	T	C	SNP	FLRT3	ENST00000341420	human	ensembl	74_37	-1	known	missense	c.1297	p.M433V	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT3	HGNC	ENSG00000125848	tier1	rs201525960	-	28	0	0.00	16	17	51.52	99	0	0.00	68	39	36.11
TTN	0	genome.wustl.edu	37	2	179464295	179464295	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	2	179464295	179464295	C	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.48629	p.R16210T	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657	tier1	-	-	47	0	0.00	48	11	18.64	112	0	0.00	116	14	10.77
CELF3	0	genome.wustl.edu	37	1	151679629	151679629	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	1	151679629	151679629	G	C	SNP	CELF3	ENST00000290583	human	ensembl	74_37	-1	known	missense	c.914	p.P305R	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CELF3	HGNC	ENSG00000159409	tier1	-	-	40	0	0.00	36	5	12.20	37	0	0.00	57	12	17.39
WDR7	0	genome.wustl.edu	37	18	54423947	54423947	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	18	54423947	54423947	C	G	SNP	WDR7	ENST00000254442	human	ensembl	74_37	+1	known	missense	c.2123	p.S708C	1.000	NULL	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR7	HGNC	ENSG00000091157	tier1	-	-	49	0	0.00	37	12	24.49	118	0	0.00	72	13	15.29
ABCC10	0	genome.wustl.edu	37	6	43405672	43405672	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	6	43405672	43405672	G	T	SNP	ABCC10	ENST00000372530	human	ensembl	74_37	+1	known	missense	c.1876	p.G626C	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC10	HGNC	ENSG00000124574	tier1	-	-	68	0	0.00	61	9	12.86	62	1	1.59	61	12	16.44
NETO1	0	genome.wustl.edu	37	18	70450953	70450953	+	Silent	SNP	T	T	A			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	18	70450953	70450953	T	A	SNP	NETO1	ENST00000327305	human	ensembl	74_37	-1	known	silent	c.828	p.R276	0.009	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt	-	no_errors	NETO1	HGNC	ENSG00000166342	tier1	-	-	62	0	0.00	44	11	20.00	81	0	0.00	71	14	16.28
AMHR2	0	genome.wustl.edu	37	12	53818234	53818234	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	12	53818234	53818234	G	A	SNP	AMHR2	ENST00000257863	human	ensembl	74_37	+1	known	missense	c.212	p.R71Q	0.989	pirsf_Anti-muellerian_hrmn_rcpt_II,pfam_Activin_rcpt	pirsf_Anti-muellerian_hrmn_rcpt_II,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	AMHR2	HGNC	ENSG00000135409	tier1	-	-	58	0	0.00	39	7	15.22	84	0	0.00	67	25	27.17
C1orf168	0	genome.wustl.edu	37	1	57185152	57185152	+	R	SNP	T	T	G			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	1	57185152	57185152	T	G	SNP	C1orf168	ENST00000493000	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	C1orf168	HGNC	ENSG00000187889	tier1	-	-	28	0	0.00	22	11	33.33	67	0	0.00	54	16	22.86
MCM7	0	genome.wustl.edu	37	7	99697360	99697360	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	7	99697360	99697360	C	A	SNP	MCM7	ENST00000303887	human	ensembl	74_37	-1	known	missense	c.128	p.R43L	1.000	superfamily_-bd_OB-fold	pfam_MCM_D-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,superfamily_-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_D-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_D-dep_ATPase,prints_MCM_D-dep_ATPase,prints_MCM7,prints_MCM_4	-	no_errors	MCM7	HGNC	ENSG00000166508	tier1	-	-	55	0	0.00	45	7	13.46	74	0	0.00	73	12	14.12
ABCB11	0	genome.wustl.edu	37	2	169820724	169820724	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	2	169820724	169820724	C	A	SNP	ABCB11	ENST00000263817	human	ensembl	74_37	-1	known	missense	c.2170	p.D724Y	1.000	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB11	HGNC	ENSG00000073734	tier1	-	-	37	0	0.00	35	6	14.63	98	0	0.00	68	40	37.04
HYDIN	0	genome.wustl.edu	37	16	70863604	70863604	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	16	70863604	70863604	T	A	SNP	HYDIN	ENST00000393567	human	ensembl	74_37	-1	putative	missense	c.14029	p.T4677S	0.293	NULL	superfamily_P-loop_NTPase,superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	tier1	-	-	68	0	0.00	49	24	32.43	55	0	0.00	26	14	35.00
SNX21	0	genome.wustl.edu	37	20	44469010	44469010	+	R	SNP	A	A	G			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	20	44469010	44469010	A	G	SNP	SNX21	ENST00000465997	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SNX21	HGNC	ENSG00000124104	tier1	-	-	79	0	0.00	31	46	59.74	66	0	0.00	28	34	54.84
LRRC16A	0	genome.wustl.edu	37	6	25606292	25606292	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	6	25606292	25606292	C	G	SNP	LRRC16A	ENST00000329474	human	ensembl	74_37	+1	novel	missense	c.3638	p.P1213R	0.998	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16A	HGNC	ENSG00000079691	tier1	-	-	55	0	0.00	29	11	26.83	90	0	0.00	70	16	18.60
OR51G1	0	genome.wustl.edu	37	11	4944762	4944762	+	Silent	SNP	G	G	A			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	11	4944762	4944762	G	A	SNP	OR51G1	ENST00000321961	human	ensembl	74_37	-1	known	silent	c.808	p.L270	0.046	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51G1	HGNC	ENSG00000176879	tier1	-	-	50	0	0.00	76	16	17.39	77	0	0.00	106	16	13.11
MGAM	0	genome.wustl.edu	37	7	141730510	141730510	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	7	141730510	141730510	A	G	SNP	MGAM	ENST00000549489	human	ensembl	74_37	+1	known	missense	c.1423	p.K475E	1.000	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	tier1	-	-	57	0	0.00	36	10	21.74	96	0	0.00	54	21	28.00
RD3	0	genome.wustl.edu	37	1	211654609	211654609	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	1	211654609	211654609	G	A	SNP	RD3	ENST00000367002	human	ensembl	74_37	-1	known	missense	c.149	p.A50V	0.427	NULL	NULL	-	no_errors	RD3	HGNC	ENSG00000198570	tier1	-	-	33	0	0.00	11	11	50.00	37	0	0.00	21	11	34.38
OPA1	0	genome.wustl.edu	37	3	193361213	193361213	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	3	193361213	193361213	G	T	SNP	OPA1	ENST00000361510	human	ensembl	74_37	+1	known	missense	c.1357	p.D453Y	1.000	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase,smart_Dynamin_GTPase,prints_Dynamin_SF	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase,smart_Dynamin_GTPase,prints_Dynamin_SF	-	no_errors	OPA1	HGNC	ENSG00000198836	tier1	-	-	23	0	0.00	25	4	13.79	80	1	1.23	61	14	18.67
TTC28	0	genome.wustl.edu	37	22	28394729	28394729	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	22	28394729	28394729	C	T	SNP	TTC28	ENST00000397906	human	ensembl	74_37	-1	novel	missense	c.4918	p.A1640T	0.997	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC28	HGNC	ENSG00000100154	tier1	-	-	40	0	0.00	54	11	16.92	14	0	0.00	32	5	13.51
DQX1	0	genome.wustl.edu	37	2	74750508	74750508	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	2	74750508	74750508	A	C	SNP	DQX1	ENST00000393951	human	ensembl	74_37	-1	known	missense	c.973	p.W325G	1.000	superfamily_P-loop_NTPase	pfam_Helicase-assoc_dom,pfam_DUF1605,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd	-	no_errors	DQX1	HGNC	ENSG00000144045	tier1	-	-	62	0	0.00	73	11	13.10	111	0	0.00	102	17	14.29
SIGLEC17P	0	genome.wustl.edu	37	19	51675387	51675387	+	R	SNP	G	G	A			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	19	51675387	51675387	G	A	SNP	SIGLEC17P	ENST00000341811	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	SIGLEC17P	HGNC	ENSG00000171101	tier1	-	-	166	0	0.00	165	19	10.33	122	0	0.00	124	19	13.29
UPF2	0	genome.wustl.edu	37	10	12071314	12071314	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	10	12071314	12071314	T	A	SNP	UPF2	ENST00000356352	human	ensembl	74_37	-1	known	missense	c.575	p.D192V	1.000	pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	pfam_MIF4G-like_typ-3,pfam_Up-fram_suppressor-2,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	-	no_errors	UPF2	HGNC	ENSG00000151461	tier1	-	-	70	0	0.00	54	22	28.95	118	0	0.00	73	37	33.64
TTC39A	0	genome.wustl.edu	37	1	51787459	51787459	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	1	51787459	51787459	C	G	SNP	TTC39A	ENST00000447632	human	ensembl	74_37	-1	known	missense	c.83	p.C28S	1.000	NULL	pfam_OMP_IML2_mit/TPR_39,smart_TPR_repeat	-	no_errors	TTC39A	HGNC	ENSG00000085831	tier1	-	-	76	0	0.00	54	16	22.86	44	0	0.00	31	9	22.50
SH3PXD2B	0	genome.wustl.edu	37	5	171809057	171809057	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	5	171809057	171809057	G	T	SNP	SH3PXD2B	ENST00000311601	human	ensembl	74_37	-1	known	missense	c.384	p.D128E	1.000	superfamily_Phox,pfscan_Phox	pfam_SH3_domain,pfam_SH3_2,pfam_Phox,pfam_SH3-like_bac-type,pfam_DUF1058,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SH3PXD2B	HGNC	ENSG00000174705	tier1	-	-	56	0	0.00	59	9	13.24	50	0	0.00	31	9	22.50
AK8	0	genome.wustl.edu	37	9	135668027	135668027	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	9	135668027	135668027	G	A	SNP	AK8	ENST00000298545	human	ensembl	74_37	-1	known	missense	c.1115	p.P372L	1.000	pfam_Adenylate_kin,superfamily_P-loop_NTPase	pfam_Adenylate_kin,superfamily_P-loop_NTPase,superfamily_Adenylate_kinase_lid-dom,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,prints_Adenylate_kin	-	no_errors	AK8	HGNC	ENSG00000165695	tier1	-	-	64	0	0.00	44	15	25.42	17	0	0.00	17	4	19.05
MMP3	0	genome.wustl.edu	37	11	102714172	102714172	+	Splice_Site	SNP	C	C	A			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	11	102714172	102714172	C	A	SNP	MMP3	ENST00000299855	human	ensembl	74_37	-1	known	splice_site	c.105+1	e1+1	1.000	-	-	-	no_errors	MMP3	HGNC	ENSG00000149968	tier1	-	-	74	0	0.00	59	11	15.71	81	0	0.00	40	10	20.00
PHLDB1	0	genome.wustl.edu	37	11	118509660	118509660	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	11	118509660	118509660	G	T	SNP	PHLDB1	ENST00000361417	human	ensembl	74_37	+1	known	missense	c.2587	p.V863L	0.839	NULL	pfam_Pleckstrin_homology,superfamily_SMAD_FHA_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB1	HGNC	ENSG00000019144	tier1	-	-	104	0	0.00	90	8	8.16	39	0	0.00	43	7	14.00
FUT9	0	genome.wustl.edu	37	6	96651911	96651911	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	6	96651911	96651911	T	A	SNP	FUT9	ENST00000302103	human	ensembl	74_37	+1	known	missense	c.880	p.S294T	1.000	pfam_Glyco_trans_10	pfam_Glyco_trans_10	-	no_errors	FUT9	HGNC	ENSG00000172461	tier1	-	-	20	0	0.00	26	6	18.75	91	0	0.00	111	16	12.60
MYO18B	0	genome.wustl.edu	37	22	26176054	26176054	+	Silent	SNP	C	C	T			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	22	26176054	26176054	C	T	SNP	MYO18B	ENST00000335473	human	ensembl	74_37	+1	known	silent	c.2100	p.L700	0.843	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,superfamily_tR-bd_arm,superfamily_Ribosomal_zn-bd,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO18B	HGNC	ENSG00000133454	tier1	-	-	77	0	0.00	64	43	40.19	31	0	0.00	25	14	35.90
PLB1	0	genome.wustl.edu	37	2	28812626	28812626	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	2	28812626	28812626	T	A	SNP	PLB1	ENST00000422425	human	ensembl	74_37	+1	known	missense	c.1972	p.W658R	1.000	NULL	pfam_Lipase_GDSL	-	no_errors	PLB1	HGNC	ENSG00000163803	tier1	-	-	22	0	0.00	16	6	27.27	39	0	0.00	40	13	24.53
ZNF267	0	genome.wustl.edu	37	16	31927605	31927605	+	Silent	SNP	C	C	A			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	16	31927605	31927605	C	A	SNP	ZNF267	ENST00000300870	human	ensembl	74_37	+1	known	silent	c.2035	p.R679	0.090	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF267	HGNC	ENSG00000185947	tier1	-	-	40	0	0.00	34	5	12.82	44	0	0.00	51	15	22.73
CAC1C	0	genome.wustl.edu	37	12	2224604	2224604	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	12	2224604	2224604	A	T	SNP	CAC1C	ENST00000399634	human	ensembl	74_37	+1	known	missense	c.264	p.K88N	0.697	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CAC1C	HGNC	ENSG00000151067	tier1	-	-	66	0	0.00	68	7	9.09	37	0	0.00	40	7	14.89
CHAF1A	0	genome.wustl.edu	37	19	4442306	4442306	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	19	4442306	4442306	A	C	SNP	CHAF1A	ENST00000301280	human	ensembl	74_37	+1	known	missense	c.2738	p.D913A	1.000	NULL	pfam_CAF1A	-	no_errors	CHAF1A	HGNC	ENSG00000167670	tier1	-	-	68	0	0.00	68	7	9.33	23	0	0.00	28	8	22.22
ZNF311	0	genome.wustl.edu	37	6	28963898	28963898	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	6	28963898	28963898	C	T	SNP	ZNF311	ENST00000377179	human	ensembl	74_37	-1	known	missense	c.881	p.R294Q	0.864	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF311	HGNC	ENSG00000197935	tier1	-	-	59	0	0.00	67	8	10.67	123	0	0.00	99	20	16.81
MYO5B	0	genome.wustl.edu	37	18	47421361	47421361	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	18	47421361	47421361	G	T	SNP	MYO5B	ENST00000285039	human	ensembl	74_37	-1	known	missense	c.2995	p.R999S	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5B	HGNC	ENSG00000167306	tier1	-	-	75	0	0.00	48	5	9.43	27	0	0.00	23	5	17.86
PTPRU	0	genome.wustl.edu	37	1	29587188	29587188	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	1	29587188	29587188	T	A	SNP	PTPRU	ENST00000345512	human	ensembl	74_37	+1	known	missense	c.917	p.L306H	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRU	HGNC	ENSG00000060656	tier1	-	-	85	0	0.00	66	9	12.00	23	0	0.00	20	3	13.04
FLRT3	0	genome.wustl.edu	37	20	14307796	14307796	+	Silent	SNP	G	G	A			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	20	14307796	14307796	G	A	SNP	FLRT3	ENST00000341420	human	ensembl	74_37	-1	known	silent	c.357	p.I119	1.000	NULL	pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT3	HGNC	ENSG00000125848	tier1	-	-	44	0	0.00	43	9	17.31	108	0	0.00	88	17	16.19
LAIR2	0	genome.wustl.edu	37	19	55019149	55019149	+	Silent	SNP	G	G	T			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	19	55019149	55019149	G	T	SNP	LAIR2	ENST00000301202	human	ensembl	74_37	+1	known	silent	c.114	p.V38	0.003	smart_Ig_sub	smart_Ig_sub	-	no_errors	LAIR2	HGNC	ENSG00000167618	tier1	-	-	30	0	0.00	43	5	10.42	16	0	0.00	17	3	15.00
ASAP1	0	genome.wustl.edu	37	8	131149206	131149206	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	8	131149206	131149206	G	T	SNP	ASAP1	ENST00000357668	human	ensembl	74_37	-1	known	missense	c.1159	p.L387M	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_ArfGAP,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_ArfGAP,prints_ArfGAP,prints_p67phox	-	no_errors	ASAP1	HGNC	ENSG00000153317	tier1	-	-	55	0	0.00	54	5	8.47	134	0	0.00	139	17	10.90
NPAS3	0	genome.wustl.edu	37	14	33836422	33836422	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	14	33836422	33836422	G	T	SNP	NPAS3	ENST00000356141	human	ensembl	74_37	+1	known	missense	c.416	p.S139I	1.000	NULL	pfam_PAS_fold_3,pfam_PAS_fold,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NPAS3	HGNC	ENSG00000151322	tier1	-	-	50	0	0.00	29	7	19.44	85	0	0.00	57	13	18.57
DH14	0	genome.wustl.edu	37	1	225586340	225586340	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	1	225586340	225586340	T	A	SNP	DH14	ENST00000430092	human	ensembl	74_37	+1	known	missense	c.13304	p.F4435Y	0.976	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Tautomerase/MIF_sf,smart_AAA+_ATPase	-	no_errors	DH14	HGNC	ENSG00000185842	tier1	-	-	40	0	0.00	46	5	9.80	90	0	0.00	92	22	19.13
TRDN	0	genome.wustl.edu	37	6	123687301	123687301	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	6	123687301	123687301	C	A	SNP	TRDN	ENST00000398178	human	ensembl	74_37	-1	known	missense	c.1300	p.G434C	0.315	NULL	pfam_Asp-B-hydro/Triadin_dom	-	no_errors	TRDN	HGNC	ENSG00000186439	tier1	-	-	62	0	0.00	72	9	11.11	131	0	0.00	93	21	18.42
SLITRK3	0	genome.wustl.edu	37	3	164908086	164908086	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	3	164908086	164908086	A	T	SNP	SLITRK3	ENST00000241274	human	ensembl	74_37	-1	known	missense	c.533	p.L178Q	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK3	HGNC	ENSG00000121871	tier1	-	-	35	0	0.00	20	10	33.33	146	0	0.00	128	28	17.95
NLRP5	0	genome.wustl.edu	37	19	56530761	56530761	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	19	56530761	56530761	C	A	SNP	NLRP5	ENST00000390649	human	ensembl	74_37	+1	known	missense	c.619	p.Q207K	0.266	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_CHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP5	HGNC	ENSG00000171487	tier1	-	-	59	0	0.00	49	19	27.94	94	0	0.00	66	26	28.26
FCGBP	0	genome.wustl.edu	37	19	40392869	40392869	+	Silent	SNP	G	G	A			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	19	40392869	40392869	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	74_37	-1	known	silent	c.7635	p.N2545	0.003	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	tier1	-	-	45	0	0.00	44	9	16.98	13	0	0.00	11	4	26.67
MAP3K19	0	genome.wustl.edu	37	2	135757570	135757570	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	2	135757570	135757570	A	G	SNP	MAP3K19	ENST00000375845	human	ensembl	74_37	-1	known	missense	c.251	p.V84A	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K19	HGNC	ENSG00000176601	tier1	-	-	44	0	0.00	40	4	9.09	138	0	0.00	103	14	11.97
UTY	0	genome.wustl.edu	37	Y	15591265	15591265	+	R	SNP	C	C	T			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	Y	15591265	15591265	C	T	SNP	UTY	ENST00000474365	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.062	-	-	-	no_errors	UTY	HGNC	ENSG00000183878	tier1	-	-	11	0	0.00	4	5	55.56	19	0	0.00	8	9	52.94
PDIA2	0	genome.wustl.edu	37	16	335673	335673	+	Silent	SNP	C	C	T			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	16	335673	335673	C	T	SNP	PDIA2	ENST00000219406	human	ensembl	74_37	+1	known	silent	c.1089	p.F363	1.000	superfamily_Thioredoxin-like_fold,tigrfam_Prot_disulphide_isomerase	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,tigrfam_Prot_disulphide_isomerase	-	no_errors	PDIA2	HGNC	ENSG00000185615	tier1	-	-	77	0	0.00	65	14	17.72	70	0	0.00	57	5	8.06
GUCY2C	0	genome.wustl.edu	37	12	14827569	14827569	+	Silent	SNP	G	G	A			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	12	14827569	14827569	G	A	SNP	GUCY2C	ENST00000261170	human	ensembl	74_37	-1	known	silent	c.1074	p.L358	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_A/G_cyclase,superfamily_Peripla_BP_I,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2C	HGNC	ENSG00000070019	tier1	-	-	86	0	0.00	100	18	15.00	109	0	0.00	108	4	3.57
PCLO	0	genome.wustl.edu	37	7	82474639	82474639	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	7	82474639	82474639	G	T	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.13994	p.P4665H	1.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	tier1	-	-	111	0	0.00	83	10	10.53	66	0	0.00	60	6	9.09
MUC16	0	genome.wustl.edu	37	19	9091072	9091072	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	19	9091072	9091072	G	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.743	p.S248F	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143	tier1	-	-	63	0	0.00	50	9	15.25	119	1	0.83	140	12	7.89
CHD7	0	genome.wustl.edu	37	8	61743078	61743078	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	8	61743078	61743078	C	G	SNP	CHD7	ENST00000423902	human	ensembl	74_37	+1	known	missense	c.3720	p.N1240K	1.000	pfam_SNF2_N,superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316	tier1	-	-	42	0	0.00	47	7	12.96	80	0	0.00	119	5	4.03
CHM	0	genome.wustl.edu	37	X	85118101	85118101	+	Splice_Site	DEL	T	T	-			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	X	85118101	85118101	T	-	DEL	CHM	ENST00000467744	human	ensembl	74_37	-1	known	splice_site_del	c.NULL	NULL	0.003	-	-	-	no_errors	CHM	HGNC	ENSG00000188419	tier1			24	0	0.00	21	4	16.00	6	0	0.00	5	1	16.67
ENSG00000185710	0	genome.wustl.edu	37	16	21896553	21896553	+	R	SNP	C	C	G			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	16	21896553	21896553	C	G	SNP	ENSG00000185710	ENST00000380598	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	RP11-645C24.2	Clone_based_vega_gene	ENSG00000185710	tier1	-	-	114	0	0.00	85	14	14.14	6	0	0.00	5	0	0.00
GAPVD1	0	genome.wustl.edu	37	9	128025963	128025989	+	Splice_Site	DEL	CAGCACTCCATCTGTAGGTATGTCTGT	CAGCACTCCATCTGTAGGTATGTCTGT	-			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	CAGCACTCCATCTGTAGGTATGTCTGT	CAGCACTCCATCTGTAGGTATGTCTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	9	128025963	128025989	CAGCACTCCATCTGTAGGTATGTCTGT	-	DEL	GAPVD1	ENST00000469528	human	ensembl	74_37	+1	known	splice_site_del	c.NULL	NULL	1.000:1.000:1.000:1.000:1.000:0.999:0.996:0.980:0.970:0.963:0.961:0.959:0.952:0.948:0.947:0.950:0.961:0.966:0.966:0.969:0.974:0.982:0.984:0.985:0.984:0.985:0.993	-	-	-	no_errors	GAPVD1	HGNC	ENSG00000165219	tier1			6	0	0.00	6	1	14.29	6	0	0.00	6	1	14.29
TOPORS-AS1	0	genome.wustl.edu	37	9	32552413	32552413	+	R	SNP	A	A	G			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	9	32552413	32552413	A	G	SNP	TOPORS-AS1	ENST00000425533	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TOPORS-AS1	HGNC	ENSG00000235453	tier1	-	-	46	0	0.00	33	6	15.38	11	0	0.00	6	0	0.00
DSPP	0	genome.wustl.edu	37	4	88536934	88536934	+	Silent	SNP	C	C	T			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	4	88536934	88536934	C	T	SNP	DSPP	ENST00000282478	human	ensembl	74_37	+1	known	silent	c.3120	p.S1040	0.968	NULL	NULL	-	no_errors	DSPP	HGNC	ENSG00000152591	tier1	rs200948555	-	46	0	0.00	38	9	19.15	4	0	0.00	3	1	25.00
ENSG00000215941	0	genome.wustl.edu	37	3	38948879	38948880	+	R	INS	-	-	CT			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	3	38948879	38948880	-	CT	INS	ENSG00000215941	ENST00000401122	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.002:0.002	-	-	-	no_errors	AC116038.1	Clone_based_ensembl_gene	ENSG00000215941	tier1			19	0	0.00	18	6	25.00	0	0	0.00	0	0	0.00
ZSCAN10	0	genome.wustl.edu	37	16	3139121	3139121	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	16	3139121	3139121	G	A	SNP	ZSCAN10	ENST00000252463	human	ensembl	74_37	-1	known	missense	c.2149	p.R717C	0.988	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN10	HGNC	ENSG00000130182	tier1	-	-	26	0	0.00	21	4	16.00	2	0	0.00	4	1	20.00
SPHKAP	0	genome.wustl.edu	37	2	228883839	228883839	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-A1KU-01A-32D-A24N-09	TCGA-DX-A1KU-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c556f81b-8a6c-4bbb-876f-2e2ce570c185	82655523-70c2-4b8d-83cd-bf3dfa800b4a	2	228883839	228883839	T	-	DEL	SPHKAP	ENST00000392056	human	ensembl	74_37	-1	known	frame_shift_del	c.1731	p.E578fs	0.397	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820	tier1			34	0	0.00	24	6	20.00	50	0	0.00	50	3	5.66
