Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
DNHD1	0	genome.wustl.edu	37	11	6579248	6579248	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	11	6579248	6579248	G	T	SNP	DNHD1	ENST00000254579	human	ensembl	74_37	+1	known	missense	c.8723	p.C2908F	0.706	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom,superfamily_P-loop_NTPase,superfamily_t-SRE	-	no_errors	DNHD1	HGNC	ENSG00000179532	tier1	-	-	47	0	0.00	39	17	30.36	53	0	0.00	28	6	17.65
CFTR	0	genome.wustl.edu	37	7	117175332	117175332	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	7	117175332	117175332	G	A	SNP	CFTR	ENST00000003084	human	ensembl	74_37	+1	known	missense	c.610	p.A204T	0.969	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom,prints_CysFib_conduc_TM,tigrfam_cAMP_cl_channel	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_CysFib_conduc_TM,tigrfam_cAMP_cl_channel	-	no_errors	CFTR	HGNC	ENSG00000001626	tier1	-	-	115	0	0.00	47	13	21.67	68	0	0.00	91	14	13.33
DJB9	0	genome.wustl.edu	37	7	108213494	108213494	+	Silent	SNP	C	C	A			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	7	108213494	108213494	C	A	SNP	DJB9	ENST00000249356	human	ensembl	74_37	+1	known	silent	c.369	p.G123	0.993	NULL	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DJB9	HGNC	ENSG00000128590	tier1	-	-	27	0	0.00	56	9	13.85	102	0	0.00	121	16	11.68
IRF8	0	genome.wustl.edu	37	16	85946797	85946797	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	16	85946797	85946797	C	T	SNP	IRF8	ENST00000268638	human	ensembl	74_37	+1	known	missense	c.508	p.R170W	0.997	NULL	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_D-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_D-bd_dom,prints_Interferon_reg_fact_D-bd_dom	-	no_errors	IRF8	HGNC	ENSG00000140968	tier1	-	-	27	0	0.00	32	5	13.51	39	0	0.00	34	6	15.00
KCNC3	0	genome.wustl.edu	37	19	50823861	50823861	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	19	50823861	50823861	G	T	SNP	KCNC3	ENST00000477616	human	ensembl	74_37	-1	known	missense	c.2159	p.S720Y	1.000	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,pfam_K_chnl_volt-dep_Kv3_ID,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3.3,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNC3	HGNC	ENSG00000131398	tier1	-	-	115	0	0.00	182	24	11.65	32	0	0.00	23	5	17.86
HRH2	0	genome.wustl.edu	37	5	175112423	175112423	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	5	175112423	175112423	G	T	SNP	HRH2	ENST00000377291	human	ensembl	74_37	+1	known	missense	c.1088	p.C363F	0.009	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Histamine_H2_rcpt,prints_GPCR_Rhodpsn,prints_5HT6_rcpt	-	no_errors	HRH2	HGNC	ENSG00000113749	tier1	-	-	25	0	0.00	45	9	16.67	66	0	0.00	70	15	17.65
DH11	0	genome.wustl.edu	37	7	21788256	21788256	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	7	21788256	21788256	G	T	SNP	DH11	ENST00000328843	human	ensembl	74_37	+1	known	missense	c.8590	p.G2864W	0.999	superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DH11	HGNC	ENSG00000105877	tier1	-	-	41	0	0.00	21	10	32.26	76	0	0.00	50	17	25.37
SDK2	0	genome.wustl.edu	37	17	71443849	71443849	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	17	71443849	71443849	G	A	SNP	SDK2	ENST00000392650	human	ensembl	74_37	-1	known	missense	c.518	p.T173M	0.193	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK2	HGNC	ENSG00000069188	tier1	-	-	61	0	0.00	60	26	30.23	83	0	0.00	55	24	30.38
DGKG	0	genome.wustl.edu	37	3	185979537	185979537	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	3	185979537	185979537	G	T	SNP	DGKG	ENST00000265022	human	ensembl	74_37	-1	known	missense	c.1300	p.P434T	1.000	smart_Diacylglycerol_kinase_cat_dom	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKG	HGNC	ENSG00000058866	tier1	-	-	18	0	0.00	32	7	17.95	39	0	0.00	30	10	25.00
CCDC173	0	genome.wustl.edu	37	2	170502675	170502675	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	2	170502675	170502675	A	C	SNP	CCDC173	ENST00000447353	human	ensembl	74_37	-1	known	missense	c.1335	p.N445K	0.084	NULL	NULL	-	no_errors	CCDC173	HGNC	ENSG00000154479	tier1	-	-	79	0	0.00	44	18	29.03	91	0	0.00	66	14	17.50
ZNF831	0	genome.wustl.edu	37	20	57766916	57766916	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	20	57766916	57766916	A	T	SNP	ZNF831	ENST00000371030	human	ensembl	74_37	+1	novel	missense	c.842	p.D281V	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203	tier1	-	-	93	0	0.00	108	62	36.47	29	0	0.00	32	20	38.46
REXO4	0	genome.wustl.edu	37	9	136272155	136272155	+	Silent	SNP	C	C	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	9	136272155	136272155	C	T	SNP	REXO4	ENST00000371942	human	ensembl	74_37	-1	known	silent	c.1191	p.V397	1.000	superfamily_RNaseH-like_dom,smart_Exonuclease	pfam_Exonuclease_RNaseT/D_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	REXO4	HGNC	ENSG00000148300	tier1	-	-	51	0	0.00	53	71	57.26	28	0	0.00	27	40	59.70
PAX4	0	genome.wustl.edu	37	7	127253883	127253883	+	Silent	SNP	C	C	A			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	7	127253883	127253883	C	A	SNP	PAX4	ENST00000341640	human	ensembl	74_37	-1	known	silent	c.465	p.R155	0.998	superfamily_Homeodomain-like	pfam_Paired_dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX4	HGNC	ENSG00000106331	tier1	-	-	53	0	0.00	78	19	19.59	78	0	0.00	74	25	25.25
RER1	0	genome.wustl.edu	37	1	2332374	2332374	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	1	2332374	2332374	G	C	SNP	RER1	ENST00000488353	human	ensembl	74_37	+1	known	missense	c.365	p.W122S	1.000	pfam_Rer1,pirsf_Rer1	pfam_Rer1,pirsf_Rer1	-	no_errors	RER1	HGNC	ENSG00000157916	tier1	-	-	59	0	0.00	47	35	42.17	123	0	0.00	56	29	34.12
C5orf42	0	genome.wustl.edu	37	5	37227105	37227105	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	5	37227105	37227105	C	G	SNP	C5orf42	ENST00000425232	human	ensembl	74_37	-1	known	missense	c.1592	p.R531T	0.001	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603	tier1	-	-	30	0	0.00	41	7	14.58	66	0	0.00	144	24	14.29
LOC284788	0	genome.wustl.edu	37	20	22381195	22381195	+	R	SNP	G	G	A			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	20	22381195	22381195	G	A	SNP	LOC284788	ENST00000377121	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP5-1004I9.1	Clone_based_vega_gene	ENSG00000204684	tier1	-	-	116	0	0.00	36	11	23.40	87	0	0.00	97	23	18.85
TRPM8	0	genome.wustl.edu	37	2	234875370	234875370	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	2	234875370	234875370	C	A	SNP	TRPM8	ENST00000324695	human	ensembl	74_37	+1	known	missense	c.1996	p.Q666K	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM8	HGNC	ENSG00000144481	tier1	-	-	40	0	0.00	37	4	9.76	60	0	0.00	31	4	11.43
CCDC178	0	genome.wustl.edu	37	18	30928934	30928934	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	18	30928934	30928934	C	A	SNP	CCDC178	ENST00000406524	human	ensembl	74_37	-1	known	missense	c.377	p.R126I	0.005	NULL	NULL	-	no_errors	CCDC178	HGNC	ENSG00000166960	tier1	-	-	31	0	0.00	26	13	33.33	91	0	0.00	84	14	14.29
SNORD56	0	genome.wustl.edu	37	20	2637331	2637331	+	R	SNP	G	G	C			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	20	2637331	2637331	G	C	SNP	SNORD56	ENST00000413522	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SNORD56	HGNC	ENSG00000229686	tier1	-	-	82	0	0.00	95	11	10.38	97	0	0.00	72	11	13.10
MATN3	0	genome.wustl.edu	37	2	20205563	20205563	+	Silent	SNP	G	G	A			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	2	20205563	20205563	G	A	SNP	MATN3	ENST00000407540	human	ensembl	74_37	-1	known	silent	c.732	p.Y244	0.372	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Matrilin_coiled-coil_trimer,pfam_EGF-like_Ca-bd_dom,smart_VWF_A,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_VWF_A	-	no_errors	MATN3	HGNC	ENSG00000132031	tier1	-	-	50	0	0.00	43	22	33.85	89	0	0.00	56	19	25.33
DCDC1	0	genome.wustl.edu	37	11	31128498	31128498	+	Nonsense_Mutation	SNP	T	T	A			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	11	31128498	31128498	T	A	SNP	DCDC1	ENST00000597505	human	ensembl	74_37	-1	putative	nonsense	c.1597	p.K533*	0.111	NULL	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Doublecortin_dom,pfscan_Doublecortin_dom,pfscan_Ricin_B_lectin	-	no_errors	DCDC1	HGNC	ENSG00000170959	tier1	-	-	104	0	0.00	22	11	33.33	107	0	0.00	83	26	23.85
DMBT1	0	genome.wustl.edu	37	10	124335918	124335918	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	10	124335918	124335918	C	A	SNP	DMBT1	ENST00000338354	human	ensembl	74_37	+1	known	missense	c.287	p.S96Y	0.000	superfamily_Srcr_rcpt-rel	pfam_SRCR,pfam_CUB_dom,pfam_ZP_dom,superfamily_Srcr_rcpt-rel,superfamily_CUB_dom,smart_Srcr_rcpt-rel,smart_CUB_dom,smart_ZP_dom,pfscan_CUB_dom,pfscan_SRCR,pfscan_ZP_dom,prints_SRCR	-	no_errors	DMBT1	HGNC	ENSG00000187908	tier1	-	-	131	0	0.00	126	42	25.00	61	0	0.00	27	17	38.64
SPATA31D5P	0	genome.wustl.edu	37	9	84533237	84533237	+	R	SNP	C	C	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	9	84533237	84533237	C	T	SNP	SPATA31D5P	ENST00000527857	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SPATA31D5P	HGNC	ENSG00000240632	tier1	-	-	54	0	0.00	20	14	41.18	51	0	0.00	19	23	54.76
KRT73	0	genome.wustl.edu	37	12	53005034	53005034	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	12	53005034	53005034	C	T	SNP	KRT73	ENST00000305748	human	ensembl	74_37	-1	known	missense	c.1064	p.R355H	0.964	pfam_IF,superfamily_Prefoldin	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT73	HGNC	ENSG00000186049	tier1	-	-	69	0	0.00	43	19	30.65	90	0	0.00	47	25	34.72
CDH3	0	genome.wustl.edu	37	16	68721584	68721584	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	16	68721584	68721584	G	T	SNP	CDH3	ENST00000264012	human	ensembl	74_37	+1	known	missense	c.1740	p.Q580H	0.988	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH3	HGNC	ENSG00000062038	tier1	-	-	29	0	0.00	41	5	10.87	117	0	0.00	84	24	22.22
FLG	0	genome.wustl.edu	37	1	152277218	152277218	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	1	152277218	152277218	G	A	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.10144	p.R3382C	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	tier1	rs147066553	-	180	0	0.00	131	46	25.99	19	0	0.00	22	3	12.00
C2orf43	0	genome.wustl.edu	37	2	20939958	20939958	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	2	20939958	20939958	C	T	SNP	C2orf43	ENST00000237822	human	ensembl	74_37	-1	known	missense	c.476	p.R159H	0.053	pfam_DUF2305	pfam_DUF2305	-	no_errors	C2orf43	HGNC	ENSG00000118961	tier1	-	-	20	0	0.00	9	4	30.77	98	1	1.00	79	27	25.47
TRPS1	0	genome.wustl.edu	37	8	116616855	116616855	+	Nonsense_Mutation	SNP	G	G	C			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	8	116616855	116616855	G	C	SNP	TRPS1	ENST00000395715	human	ensembl	74_37	-1	known	nonsense	c.1341	p.Y447*	1.000	smart_Znf_C2H2-like	pfam_Znf_GATA,smart_Znf_C2H2-like,smart_Znf_GATA,pfscan_Znf_C2H2,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	TRPS1	HGNC	ENSG00000104447	tier1	-	-	41	0	0.00	14	4	22.22	58	0	0.00	37	23	38.33
FAM83E	0	genome.wustl.edu	37	19	49104467	49104467	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	19	49104467	49104467	G	A	SNP	FAM83E	ENST00000263266	human	ensembl	74_37	-1	known	nonsense	c.1336	p.R446*	0.023	NULL	pfam_DUF1669,superfamily_Acyl_CoA_acyltransferase	-	no_errors	FAM83E	HGNC	ENSG00000105523	tier1	-	-	43	0	0.00	64	6	8.57	12	0	0.00	26	9	25.71
FLJ36000	0	genome.wustl.edu	37	17	21911095	21911095	+	R	SNP	C	C	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	17	21911095	21911095	C	T	SNP	FLJ36000	ENST00000581223	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.224	-	-	-	no_errors	RP11-744K17.9	Clone_based_vega_gene	ENSG00000266795	tier1	-	-	18	0	0.00	17	8	30.77	14	0	0.00	11	3	21.43
DGKK	0	genome.wustl.edu	37	X	50134456	50134456	+	R	SNP	G	G	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	X	50134456	50134456	G	T	SNP	DGKK	ENST00000376025	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DGKK	HGNC	ENSG00000204466	tier1	-	-	46	0	0.00	15	5	25.00	44	0	0.00	58	9	13.43
ADAMTS9	0	genome.wustl.edu	37	3	64527528	64527528	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	3	64527528	64527528	C	T	SNP	ADAMTS9	ENST00000498707	human	ensembl	74_37	-1	known	missense	c.5183	p.R1728H	0.894	pfam_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS9	HGNC	ENSG00000163638	tier1	rs202044216	-	74	0	0.00	46	18	28.12	107	0	0.00	96	33	25.58
REXO4	0	genome.wustl.edu	37	9	136272961	136272961	+	Silent	SNP	C	C	A			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	9	136272961	136272961	C	A	SNP	REXO4	ENST00000371942	human	ensembl	74_37	-1	known	silent	c.1119	p.G373	0.013	pfam_Exonuclease_RNaseT/D_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	pfam_Exonuclease_RNaseT/D_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	REXO4	HGNC	ENSG00000148300	tier1	-	-	40	0	0.00	110	97	46.86	84	0	0.00	118	118	50.00
CAC2D1	0	genome.wustl.edu	37	7	81643716	81643716	+	Splice_Site	SNP	C	C	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	7	81643716	81643716	C	T	SNP	CAC2D1	ENST00000356253	human	ensembl	74_37	-1	known	splice_site	c.1222+1	e13+1	1.000	-	-	-	no_errors	CAC2D1	HGNC	ENSG00000153956	tier1	-	-	52	0	0.00	15	8	34.78	79	0	0.00	70	17	19.54
XPNPEP1	0	genome.wustl.edu	37	10	111667471	111667471	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	10	111667471	111667471	A	T	SNP	XPNPEP1	ENST00000502935	human	ensembl	74_37	-1	known	missense	c.224	p.I75N	1.000	pfam_Creatinase	pfam_Pept_M24_structural-domain,pfam_Creatinase,superfamily_Pept_M24_structural-domain	-	no_errors	XPNPEP1	HGNC	ENSG00000108039	tier1	-	-	61	0	0.00	43	6	12.24	75	1	1.30	61	13	17.57
TCF12	0	genome.wustl.edu	37	15	57578959	57578959	+	R	SNP	T	T	C			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	15	57578959	57578959	T	C	SNP	TCF12	ENST00000560191	human	ensembl	74_37	+1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	TCF12	HGNC	ENSG00000140262	tier1	-	-	23	0	0.00	19	9	32.14	71	0	0.00	49	19	27.94
USH2A	0	genome.wustl.edu	37	1	215953333	215953333	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	1	215953333	215953333	G	T	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	missense	c.10791	p.S3597R	0.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	tier1	-	-	28	0	0.00	21	4	16.00	57	0	0.00	36	9	20.00
AMBRA1	0	genome.wustl.edu	37	11	46564792	46564792	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	11	46564792	46564792	G	T	SNP	AMBRA1	ENST00000458649	human	ensembl	74_37	-1	known	missense	c.775	p.Q259K	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AMBRA1	HGNC	ENSG00000110497	tier1	-	-	16	0	0.00	26	10	27.78	26	0	0.00	24	7	22.58
PGK2	0	genome.wustl.edu	37	6	49754699	49754699	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	6	49754699	49754699	C	A	SNP	PGK2	ENST00000304801	human	ensembl	74_37	-1	known	missense	c.202	p.D68Y	1.000	pfam_Phosphoglycerate_kinase,superfamily_Phosphoglycerate_kinase	pfam_Phosphoglycerate_kinase,superfamily_Phosphoglycerate_kinase,prints_Phosphoglycerate_kinase	-	no_errors	PGK2	HGNC	ENSG00000170950	tier1	-	-	55	0	0.00	7	4	36.36	74	0	0.00	45	27	37.50
C12orf55	0	genome.wustl.edu	37	12	97254611	97254611	+	Silent	SNP	C	C	A			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	12	97254611	97254611	C	A	SNP	C12orf55	ENST00000524981	human	ensembl	74_37	+1	putative	silent	c.9186	p.I3062	0.185	NULL	superfamily_Fibronectin_type3	-	no_errors	C12orf55	HGNC	ENSG00000188596	tier1	-	-	58	0	0.00	42	8	16.00	62	1	1.59	106	23	17.83
NOS3	0	genome.wustl.edu	37	7	150710438	150710438	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	7	150710438	150710438	G	T	SNP	NOS3	ENST00000297494	human	ensembl	74_37	+1	known	missense	c.3226	p.A1076S	1.000	pfam_OxRdtase_FAD/D-bd,pirsf_NOS_euk	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/D-bd,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_euk,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS3	HGNC	ENSG00000164867	tier1	-	-	62	0	0.00	72	15	17.24	58	0	0.00	24	15	38.46
PRKCQ	0	genome.wustl.edu	37	10	6540493	6540493	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	10	6540493	6540493	G	A	SNP	PRKCQ	ENST00000263125	human	ensembl	74_37	-1	known	missense	c.407	p.T136M	0.000	pirsf_Prot_kin_PKC_delta	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKCQ	HGNC	ENSG00000065675	tier1	-	-	63	0	0.00	45	5	10.00	86	0	0.00	38	5	11.63
PTPRH	0	genome.wustl.edu	37	19	55720830	55720830	+	R	SNP	G	G	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	19	55720830	55720830	G	T	SNP	PTPRH	ENST00000587662	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.124	-	-	-	no_errors	PTPRH	HGNC	ENSG00000080031	tier1	-	-	14	0	0.00	27	6	18.18	57	0	0.00	75	17	18.48
SEMA6B	0	genome.wustl.edu	37	19	4556091	4556091	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	19	4556091	4556091	C	T	SNP	SEMA6B	ENST00000301293	human	ensembl	74_37	-1	known	missense	c.380	p.R127Q	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,pfscan_Semap_dom	-	no_errors	SEMA6B	HGNC	ENSG00000167680	tier1	-	-	61	0	0.00	57	19	25.00	45	0	0.00	46	20	30.30
TLN2	0	genome.wustl.edu	37	15	63029191	63029191	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	15	63029191	63029191	G	A	SNP	TLN2	ENST00000306829	human	ensembl	74_37	+1	known	missense	c.3473	p.R1158Q	0.875	superfamily_Vinculin/catenin	pfam_Talin_cent,pfam_ILWEQ_dom,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ_dom,pfscan_FERM_domain,pfscan_ILWEQ_dom	-	no_errors	TLN2	HGNC	ENSG00000171914	tier1	-	-	55	0	0.00	55	11	16.67	47	0	0.00	36	4	10.00
LRRC66	0	genome.wustl.edu	37	4	52862055	52862055	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	4	52862055	52862055	G	A	SNP	LRRC66	ENST00000343457	human	ensembl	74_37	-1	known	missense	c.1133	p.A378V	0.974	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC66	HGNC	ENSG00000188993	tier1	-	-	45	0	0.00	44	9	16.67	66	0	0.00	59	13	18.06
TP53	0	genome.wustl.edu	37	17	7578515	7578515	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	17	7578515	7578515	T	C	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.415	p.K139E	1.000	pfam_p53_D-bd,superfamily_p53-like_TF_D-bd,prints_p53_tumour_suppressor	pfam_p53_D-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_D-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	43	0	0.00	25	35	58.33	61	0	0.00	34	52	60.47
BAI3	0	genome.wustl.edu	37	6	69943233	69943233	+	Silent	SNP	C	C	A			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	6	69943233	69943233	C	A	SNP	BAI3	ENST00000370598	human	ensembl	74_37	+1	known	silent	c.2532	p.T844	1.000	pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298	tier1	-	-	62	0	0.00	53	14	20.90	96	0	0.00	87	24	21.62
LCP1	0	genome.wustl.edu	37	13	46717508	46717508	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	13	46717508	46717508	G	T	SNP	LCP1	ENST00000323076	human	ensembl	74_37	-1	known	missense	c.1285	p.L429I	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_EF_hand_dom,pfam_CAMSAP_CH,superfamily_CH-domain,smart_EF_hand_dom,smart_CH-domain,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	LCP1	HGNC	ENSG00000136167	tier1	-	-	77	0	0.00	58	11	15.94	125	0	0.00	70	24	25.53
SOX30	0	genome.wustl.edu	37	5	157075723	157075723	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	5	157075723	157075723	C	A	SNP	SOX30	ENST00000265007	human	ensembl	74_37	-1	known	missense	c.1149	p.K383N	1.000	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX30	HGNC	ENSG00000039600	tier1	-	-	52	0	0.00	90	26	22.41	129	0	0.00	106	29	21.48
GPR6	0	genome.wustl.edu	37	6	110300822	110300822	+	Silent	SNP	C	C	G			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	6	110300822	110300822	C	G	SNP	GPR6	ENST00000414000	human	ensembl	74_37	+1	known	silent	c.552	p.S184	0.895	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR_3/6/12_orphan,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR6,prints_GPR_3/6/12_orphan,prints_GPCR_Rhodpsn	-	no_errors	GPR6	HGNC	ENSG00000146360	tier1	-	-	38	0	0.00	52	6	10.34	43	0	0.00	36	4	10.00
PIGR	0	genome.wustl.edu	37	1	207110639	207110639	+	Silent	SNP	G	G	A			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	1	207110639	207110639	G	A	SNP	PIGR	ENST00000356495	human	ensembl	74_37	-1	known	silent	c.846	p.V282	0.767	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	PIGR	HGNC	ENSG00000162896	tier1	rs142351595	-	43	0	0.00	43	8	15.69	76	0	0.00	39	5	11.36
FAM27L	0	genome.wustl.edu	37	17	21825355	21825355	+	R	SNP	C	C	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	17	21825355	21825355	C	T	SNP	FAM27L	ENST00000426869	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	FAM27L	HGNC	ENSG00000178130	tier1	-	-	27	0	0.00	27	4	12.90	61	0	0.00	33	4	10.81
SORCS3	0	genome.wustl.edu	37	10	106970991	106970991	+	Silent	SNP	C	C	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	10	106970991	106970991	C	T	SNP	SORCS3	ENST00000369701	human	ensembl	74_37	+1	known	silent	c.2358	p.S786	1.000	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS3	HGNC	ENSG00000156395	tier1	-	-	42	0	0.00	20	7	25.93	138	0	0.00	120	30	20.00
HNRNPL	0	genome.wustl.edu	37	19	39329656	39329656	+	Splice_Site	SNP	C	C	G			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	19	39329656	39329656	C	G	SNP	HNRNPL	ENST00000221419	human	ensembl	74_37	-1	known	splice_site	c.1234-1	e9-1	1.000	-	-	-	no_errors	HNRNPL	HGNC	ENSG00000104824	tier1	-	-	45	0	0.00	89	14	13.59	58	0	0.00	60	12	16.67
SDSL	0	genome.wustl.edu	37	12	113875883	113875883	+	Nonstop_Mutation	SNP	G	G	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	12	113875883	113875883	G	T	SNP	SDSL	ENST00000345635	human	ensembl	74_37	+1	known	nonstop	c.989	p.*330L	0.242	NULL	pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF	-	no_errors	SDSL	HGNC	ENSG00000139410	tier1	-	-	51	0	0.00	56	8	12.50	71	0	0.00	43	11	20.37
BRINP2	0	genome.wustl.edu	37	1	177245380	177245380	+	Silent	SNP	T	T	C			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	1	177245380	177245380	T	C	SNP	BRINP2	ENST00000361539	human	ensembl	74_37	+1	known	silent	c.822	p.A274	0.001	smart_MACPF	pfam_MACPF,smart_MACPF	-	no_errors	BRINP2	HGNC	ENSG00000198797	tier1	-	-	58	0	0.00	37	13	26.00	18	0	0.00	10	3	23.08
SNORA76	0	genome.wustl.edu	37	17	62223815	62223815	+	R	SNP	A	A	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	17	62223815	62223815	A	T	SNP	SNORA76	ENST00000408535	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SNORA76	HGNC	ENSG00000266402	tier1	-	-	45	0	0.00	28	34	54.84	48	0	0.00	20	19	48.72
FLNB	0	genome.wustl.edu	37	3	58120362	58120362	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	3	58120362	58120362	C	T	SNP	FLNB	ENST00000295956	human	ensembl	74_37	+1	known	missense	c.4534	p.L1512F	1.000	superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068	tier1	-	-	67	0	0.00	60	23	27.71	80	0	0.00	49	14	22.22
NGB	0	genome.wustl.edu	37	14	77732947	77732947	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	14	77732947	77732947	G	A	SNP	NGB	ENST00000298352	human	ensembl	74_37	-1	known	missense	c.388	p.R130W	0.054	superfamily_Globin-like,pfscan_Globin	pfam_Globin,superfamily_Globin-like,pfscan_Globin	-	no_errors	NGB	HGNC	ENSG00000165553	tier1	-	-	68	0	0.00	68	17	20.00	22	0	0.00	11	2	15.38
FKBP9L	0	genome.wustl.edu	37	7	55750501	55750501	+	R	SNP	G	G	A			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	7	55750501	55750501	G	A	SNP	FKBP9L	ENST00000455909	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.951	-	-	-	no_errors	FKBP9L	HGNC	ENSG00000176826	tier1	rs200141514	-	62	0	0.00	74	34	31.19	57	0	0.00	38	24	38.71
PCDH11Y	0	genome.wustl.edu	37	Y	4967352	4967352	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	Y	4967352	4967352	G	T	SNP	PCDH11Y	ENST00000215473	human	ensembl	74_37	+1	known	missense	c.1733	p.G578V	0.997	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11Y	HGNC	ENSG00000099715	tier1	-	-	16	0	0.00	5	6	54.55	45	0	0.00	25	22	46.81
HYDIN	0	genome.wustl.edu	37	16	70926319	70926319	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	16	70926319	70926319	A	T	SNP	HYDIN	ENST00000393567	human	ensembl	74_37	-1	putative	missense	c.9362	p.F3121Y	0.012	NULL	superfamily_P-loop_NTPase,superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	tier1	-	-	112	0	0.00	98	9	8.41	181	0	0.00	154	21	12.00
GRM3	0	genome.wustl.edu	37	7	86415655	86415655	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	7	86415655	86415655	C	T	SNP	GRM3	ENST00000361669	human	ensembl	74_37	+1	known	missense	c.547	p.R183C	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM3	HGNC	ENSG00000198822	tier1	-	-	51	0	0.00	59	32	35.16	79	0	0.00	53	41	43.62
USP47	0	genome.wustl.edu	37	11	11970051	11970052	+	Frame_Shift_Ins	INS	-	-	A			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	11	11970051	11970052	-	A	INS	USP47	ENST00000399455	human	ensembl	74_37	+1	known	frame_shift_ins	c.3354_3355	p.G1120fs	0.999:1.000	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP47	HGNC	ENSG00000170242	tier1			21	0	0.00	13	5	27.78	84	0	0.00	70	19	21.35
ATP12A	0	genome.wustl.edu	37	13	25265371	25265371	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	13	25265371	25265371	C	T	SNP	ATP12A	ENST00000218548	human	ensembl	74_37	+1	known	missense	c.1069	p.L357F	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP12A	HGNC	ENSG00000075673	tier1	-	-	29	0	0.00	17	14	45.16	10	0	0.00	5	7	58.33
CHD1	0	genome.wustl.edu	37	5	98236915	98236915	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	5	98236915	98236915	C	A	SNP	CHD1	ENST00000284049	human	ensembl	74_37	-1	known	missense	c.562	p.V188F	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD1	HGNC	ENSG00000153922	tier1	-	-	52	0	0.00	103	9	8.04	129	0	0.00	113	9	7.38
TLR1	0	genome.wustl.edu	37	4	38798892	38798892	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	4	38798892	38798892	C	A	SNP	TLR1	ENST00000308979	human	ensembl	74_37	-1	known	missense	c.1561	p.A521S	0.887	pirsf_Toll-like_receptor	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR1	HGNC	ENSG00000174125	tier1	-	-	98	0	0.00	99	13	11.61	69	0	0.00	96	9	8.57
NLRP4	0	genome.wustl.edu	37	19	56369584	56369584	+	Silent	SNP	G	G	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	19	56369584	56369584	G	T	SNP	NLRP4	ENST00000301295	human	ensembl	74_37	+1	known	silent	c.825	p.L275	0.965	superfamily_P-loop_NTPase,pfscan_CHT_NTPase	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_CHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP4	HGNC	ENSG00000160505	tier1	-	-	61	0	0.00	80	8	9.09	106	1	0.93	134	7	4.96
RPL3L	0	genome.wustl.edu	37	16	2003015	2003015	+	Silent	SNP	C	C	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	16	2003015	2003015	C	T	SNP	RPL3L	ENST00000268661	human	ensembl	74_37	-1	known	silent	c.225	p.A75	0.002	pfam_Ribosomal_L3,superfamily_Transl_B-barrel	pfam_Ribosomal_L3,superfamily_Transl_B-barrel	-	no_errors	RPL3L	HGNC	ENSG00000140986	tier1	-	-	32	0	0.00	60	9	13.04	76	0	0.00	55	6	9.84
GSTCD	0	genome.wustl.edu	37	4	106763272	106763272	+	Silent	SNP	A	A	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	4	106763272	106763272	A	T	SNP	GSTCD	ENST00000360505	human	ensembl	74_37	+1	known	silent	c.1746	p.P582	0.729	NULL	pfam_rR_ssu_MeTfrase_G,pfam_Small_mtfrase_dom,superfamily_Glutathione-S-Trfase_C-like	-	no_errors	GSTCD	HGNC	ENSG00000138780	tier1	-	-	24	0	0.00	37	8	17.78	91	0	0.00	128	9	6.52
PSD2	0	genome.wustl.edu	37	5	139197095	139197095	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	5	139197095	139197095	A	T	SNP	PSD2	ENST00000274710	human	ensembl	74_37	+1	known	missense	c.1046	p.E349V	1.000	pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,pfscan_Sec7_dom	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom,prints_PH_dom-spectrin-type	-	no_errors	PSD2	HGNC	ENSG00000146005	tier1	-	-	71	0	0.00	119	11	8.40	88	0	0.00	105	6	5.41
MMAA	0	genome.wustl.edu	37	4	146575181	146575181	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	4	146575181	146575181	G	T	SNP	MMAA	ENST00000511969	human	ensembl	74_37	+1	known	missense	c.769	p.G257C	1.000	NULL	pfam_ArgK,superfamily_P-loop_NTPase	-	no_errors	MMAA	HGNC	ENSG00000151611	tier1	-	-	41	0	0.00	66	6	8.33	73	0	0.00	64	5	7.25
TMCC3	0	genome.wustl.edu	37	12	94975900	94975900	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	12	94975900	94975900	G	A	SNP	TMCC3	ENST00000261226	human	ensembl	74_37	-1	known	missense	c.493	p.R165C	0.935	pfam_Predicted_TM_coiled-coil_2	pfam_Predicted_TM_coiled-coil_2	-	no_errors	TMCC3	HGNC	ENSG00000057704	tier1	-	-	54	0	0.00	68	7	9.33	96	0	0.00	92	6	6.12
DIDO1	0	genome.wustl.edu	37	20	61512209	61512209	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	20	61512209	61512209	T	-	DEL	DIDO1	ENST00000266070	human	ensembl	74_37	-1	known	frame_shift_del	c.5099	p.Y1700fs	0.475	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	DIDO1	HGNC	ENSG00000101191	tier1			42	0	0.00	68	10	12.82	34	0	0.00	42	4	8.70
ECEL1P2	0	genome.wustl.edu	37	2	233251555	233251555	+	R	SNP	G	G	A			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	2	233251555	233251555	G	A	SNP	ECEL1P2	ENST00000461596	human	ensembl	74_37	-1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	ECEL1P2	HGNC	ENSG00000244280	tier1	-	-	61	0	0.00	64	6	8.57	14	0	0.00	7	0	0.00
HIST2H2BF	0	genome.wustl.edu	37	1	149783702	149783702	+	Silent	SNP	G	G	A			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	1	149783702	149783702	G	A	SNP	HIST2H2BF	ENST00000427880	human	ensembl	74_37	-1	known	silent	c.177	p.A59	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST2H2BF	HGNC	ENSG00000203814	tier1	-	-	110	0	0.00	67	90	57.32	5	0	0.00	0	1	100.00
ENSG00000215398	0	genome.wustl.edu	37	14	19114730	19114730	+	R	SNP	G	G	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	14	19114730	19114730	G	T	SNP	ENSG00000215398	ENST00000553170	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-754I20.1	Clone_based_vega_gene	ENSG00000215398	tier1	-	-	196	0	0.00	142	18	11.25	1	0	0.00	1	0	0.00
KRTAP5-2	0	genome.wustl.edu	37	11	1619355	1619355	+	Nonsense_Mutation	SNP	A	A	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	11	1619355	1619355	A	T	SNP	KRTAP5-2	ENST00000412090	human	ensembl	74_37	-1	known	nonsense	c.126	p.C42*	0.868	NULL	NULL	-	no_errors	KRTAP5-2	HGNC	ENSG00000205867	tier1	-	-	84	0	0.00	65	22	23.91	3	0	0.00	1	0	0.00
LOC101927345	0	genome.wustl.edu	37	1	143378853	143378853	+	R	SNP	C	C	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	1	143378853	143378853	C	T	SNP	LOC101927345	ENST00000423394	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-435B5.5	Clone_based_vega_gene	ENSG00000238261	tier1	rs200183428	-	144	1	0.69	31	6	16.22	0	0	0.00	0	0	0.00
ENSG00000234719	0	genome.wustl.edu	37	16	12021609	12021609	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	16	12021609	12021609	G	A	SNP	ENSG00000234719	ENST00000399147	human	ensembl	74_37	-1	putative	missense	c.815	p.T272I	0.000	NULL	NULL	-	no_errors	RP11-166B2.1	Clone_based_vega_gene	ENSG00000234719	tier1	-	-	37	0	0.00	30	5	13.89	3	0	0.00	1	2	66.67
PCDHB6	0	genome.wustl.edu	37	5	140531234	140531234	+	Silent	SNP	C	C	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	5	140531234	140531234	C	T	SNP	PCDHB6	ENST00000231136	human	ensembl	74_37	+1	known	silent	c.1396	p.L466	0.198	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB6	HGNC	ENSG00000113211	tier1	-	-	108	0	0.00	191	37	16.23	4	0	0.00	7	2	22.22
SLC1A6	0	genome.wustl.edu	37	19	15083667	15083667	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	19	15083667	15083667	C	T	SNP	SLC1A6	ENST00000221742	human	ensembl	74_37	-1	known	missense	c.56	p.R19Q	0.022	NULL	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A6	HGNC	ENSG00000105143	tier1	-	-	10	0	0.00	9	11	55.00	1	0	0.00	4	2	33.33
EDN3	0	genome.wustl.edu	37	20	57896081	57896081	+	Silent	SNP	G	G	T			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	20	57896081	57896081	G	T	SNP	EDN3	ENST00000337938	human	ensembl	74_37	+1	known	silent	c.375	p.V125	1.000	prints_Bibrotoxin/Sarafotoxin-D	pfam_Endothln-like_toxin,smart_Endothln-like_toxin,prints_Bibrotoxin/Sarafotoxin-D	-	no_errors	EDN3	HGNC	ENSG00000124205	tier1	-	-	49	0	0.00	106	16	13.11	61	0	0.00	109	3	2.68
RIC8A	0	genome.wustl.edu	37	11	212446	212446	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1L1-01A-11D-A24N-09	TCGA-DX-A1L1-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	30c48200-0b11-4628-a643-ecba777aad1c	5bdd61e4-1fc4-453c-aeda-9c0a0408914e	11	212446	212446	G	A	SNP	RIC8A	ENST00000325207	human	ensembl	74_37	+1	known	missense	c.1000	p.V334M	0.993	pfam_Gua_nucleotide_exch_fac_Ric8,superfamily_ARM-type_fold,prints_Synembryn	pfam_Gua_nucleotide_exch_fac_Ric8,superfamily_ARM-type_fold,prints_Synembryn	-	no_errors	RIC8A	HGNC	ENSG00000177963	tier1	-	-	60	0	0.00	61	10	14.08	44	0	0.00	31	3	8.82
