Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
ALOX12B	0	genome.wustl.edu	37	17	7980435	7980435	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	17	7980435	7980435	G	A	SNP	ALOX12B	ENST00000319144	human	ensembl	74_37	-1	known	missense	c.1148	p.T383M	0.987	pfam_LipOase_C,superfamily_LipOase_C,prints_LipOase_C	pfam_LipOase_C,pfam_PLAT/LH2_dom,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,prints_LipOase_C,prints_LipOase_mml	-	no_errors	ALOX12B	HGNC	ENSG00000179477	tier1	-	-	41	0	0.00	24	21	46.67	82	0	0.00	54	29	34.94
C1orf101	0	genome.wustl.edu	37	1	244780873	244780873	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	1	244780873	244780873	G	C	SNP	C1orf101	ENST00000366531	human	ensembl	74_37	+1	known	missense	c.2080	p.D694H	1.000	NULL	NULL	-	no_errors	C1orf101	HGNC	ENSG00000179397	tier1	-	-	19	0	0.00	65	22	25.29	108	0	0.00	174	29	14.29
XIRP2	0	genome.wustl.edu	37	2	168108282	168108282	+	Silent	SNP	T	T	C			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	2	168108282	168108282	T	C	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	silent	c.10380	p.D3460	1.000	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092	tier1	-	-	18	0	0.00	8	8	50.00	81	0	0.00	42	29	40.28
DDR2	0	genome.wustl.edu	37	1	162735847	162735847	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	1	162735847	162735847	A	G	SNP	DDR2	ENST00000367921	human	ensembl	74_37	+1	known	missense	c.1156	p.T386A	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DDR2	HGNC	ENSG00000162733	tier1	-	-	27	0	0.00	22	18	45.00	110	0	0.00	41	47	53.41
PTPRQ	0	genome.wustl.edu	37	12	81025993	81025993	+	Silent	SNP	C	C	T			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	12	81025993	81025993	C	T	SNP	PTPRQ	ENST00000266688	human	ensembl	74_37	+1	known	silent	c.5697	p.T1899	0.998	NULL	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRQ	HGNC	ENSG00000139304	tier1	rs138300863	GMAF=0.0005	36	0	0.00	730	144	16.48	79	0	0.00	2092	421	16.67
ALG2	0	genome.wustl.edu	37	9	101980657	101980657	+	Nonsense_Mutation	SNP	A	A	T			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	9	101980657	101980657	A	T	SNP	ALG2	ENST00000476832	human	ensembl	74_37	-1	known	nonsense	c.810	p.Y270*	1.000	pfam_Glyco_trans_1	pfam_Glyco_trans_1	-	no_errors	ALG2	HGNC	ENSG00000119523	tier1	-	-	42	0	0.00	24	12	33.33	106	0	0.00	58	35	37.23
OBP2B	0	genome.wustl.edu	37	9	136080786	136080786	+	R	SNP	G	G	C			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	9	136080786	136080786	G	C	SNP	OBP2B	ENST00000461961	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	OBP2B	HGNC	ENSG00000171102	tier1	-	-	62	0	0.00	20	23	53.49	44	0	0.00	23	18	43.90
OR51I2	0	genome.wustl.edu	37	11	5474866	5474866	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	11	5474866	5474866	C	T	SNP	OR51I2	ENST00000341449	human	ensembl	74_37	+1	known	nonsense	c.148	p.R50*	0.002	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51I2	HGNC	ENSG00000187918	tier1	rs145725236	GMAF=0.0005	37	0	0.00	53	5	8.62	45	0	0.00	19	3	13.64
TRIOBP	0	genome.wustl.edu	37	22	38131066	38131066	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	22	38131066	38131066	G	A	SNP	TRIOBP	ENST00000406386	human	ensembl	74_37	+1	known	missense	c.4723	p.A1575T	0.040	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	TRIOBP	HGNC	ENSG00000100106	tier1	-	-	35	0	0.00	14	10	41.67	24	0	0.00	13	12	48.00
RNF113A	0	genome.wustl.edu	37	X	119005266	119005266	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	X	119005266	119005266	C	T	SNP	RNF113A	ENST00000371442	human	ensembl	74_37	-1	known	missense	c.311	p.R104H	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF113A	HGNC	ENSG00000125352	tier1	-	-	27	0	0.00	22	10	31.25	88	0	0.00	61	28	31.46
IGSF1	0	genome.wustl.edu	37	X	130419397	130419397	+	Silent	SNP	G	G	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	X	130419397	130419397	G	A	SNP	IGSF1	ENST00000370903	human	ensembl	74_37	-1	known	silent	c.423	p.P141	0.000	smart_Ig_sub	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	IGSF1	HGNC	ENSG00000147255	tier1	-	-	11	0	0.00	4	5	55.56	44	0	0.00	47	31	39.74
MBL2	0	genome.wustl.edu	37	10	54530489	54530489	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	10	54530489	54530489	G	A	SNP	MBL2	ENST00000373968	human	ensembl	74_37	-1	known	missense	c.245	p.P82L	0.910	pfam_Collagen	pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	MBL2	HGNC	ENSG00000165471	tier1	-	-	43	0	0.00	34	22	39.29	113	0	0.00	59	48	44.86
KRT1	0	genome.wustl.edu	37	12	53072523	53072523	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	12	53072523	53072523	C	A	SNP	KRT1	ENST00000252244	human	ensembl	74_37	-1	known	missense	c.609	p.Q203H	1.000	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT1	HGNC	ENSG00000167768	tier1	-	-	31	0	0.00	33	20	37.74	110	0	0.00	77	48	38.40
NSUN6	0	genome.wustl.edu	37	10	18874990	18874990	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	10	18874990	18874990	G	C	SNP	NSUN6	ENST00000377304	human	ensembl	74_37	-1	known	missense	c.810	p.N270K	0.230	pfam_Fmu/NOL1/Nop2p,pfam_rR_MeTrfase_FtsJ_dom	pfam_Fmu/NOL1/Nop2p,pfam_rR_MeTrfase_FtsJ_dom,pfam_PUA,superfamily_PUA-like_domain,pfscan_PUA,prints_RCMT	-	no_errors	NSUN6	HGNC	ENSG00000241058	tier1	-	-	42	0	0.00	38	13	25.49	90	0	0.00	84	11	11.46
AMY2B	0	genome.wustl.edu	37	1	104116343	104116343	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	1	104116343	104116343	G	A	SNP	AMY2B	ENST00000361355	human	ensembl	74_37	+1	known	missense	c.527	p.R176H	0.991	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,pfam_A-amylase_b_C,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,smart_A-amylase_b_C,prints_Alpha_amylase	-	no_errors	AMY2B	HGNC	ENSG00000240038	tier1	rs144281226	GMAF=0.0005	209	0	0.00	167	79	32.11	60	0	0.00	41	12	22.64
IL12RB2	0	genome.wustl.edu	37	1	67804363	67804363	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	1	67804363	67804363	C	A	SNP	IL12RB2	ENST00000262345	human	ensembl	74_37	+1	known	missense	c.1015	p.Q339K	1.000	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,pfam_IgC2-like_lig-bd,pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL12RB2	HGNC	ENSG00000081985	tier1	-	-	27	0	0.00	13	21	61.76	94	0	0.00	41	26	38.81
ITGA7	0	genome.wustl.edu	37	12	56081767	56081767	+	Silent	SNP	C	C	T			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	12	56081767	56081767	C	T	SNP	ITGA7	ENST00000555728	human	ensembl	74_37	-1	known	silent	c.3303	p.L1101	0.999	prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA7	HGNC	ENSG00000135424	tier1	-	-	36	0	0.00	26	14	35.00	92	0	0.00	47	43	47.25
SLAMF6	0	genome.wustl.edu	37	1	160460928	160460928	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	1	160460928	160460928	C	G	SNP	SLAMF6	ENST00000368057	human	ensembl	74_37	-1	known	missense	c.633	p.Q211H	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	SLAMF6	HGNC	ENSG00000162739	tier1	-	-	44	0	0.00	32	11	25.58	44	0	0.00	27	12	30.77
ABCA13	0	genome.wustl.edu	37	7	48556449	48556449	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	7	48556449	48556449	G	A	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	missense	c.13769	p.R4590Q	0.054	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	tier1	-	-	68	0	0.00	60	40	40.00	88	0	0.00	74	49	39.84
LUZP2	0	genome.wustl.edu	37	11	25071591	25071591	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	11	25071591	25071591	A	G	SNP	LUZP2	ENST00000336930	human	ensembl	74_37	+1	known	missense	c.773	p.Q258R	0.000	NULL	NULL	-	no_errors	LUZP2	HGNC	ENSG00000187398	tier1	-	-	38	0	0.00	12	24	66.67	89	0	0.00	11	37	77.08
DMAP1	0	genome.wustl.edu	37	1	44686023	44686023	+	R	SNP	G	G	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	1	44686023	44686023	G	A	SNP	DMAP1	ENST00000494092	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DMAP1	HGNC	ENSG00000178028	tier1	-	-	19	0	0.00	14	6	30.00	23	0	0.00	25	12	32.43
S100A5	0	genome.wustl.edu	37	1	153512667	153512667	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	1	153512667	153512667	T	C	SNP	S100A5	ENST00000359215	human	ensembl	74_37	-1	known	missense	c.55	p.M19V	0.722	NULL	pfam_S100_Ca-bd_sub,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	S100A5	HGNC	ENSG00000196420	tier1	-	-	47	0	0.00	38	23	37.70	89	0	0.00	47	11	18.97
TBC1D9B	0	genome.wustl.edu	37	5	179300189	179300189	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	5	179300189	179300189	G	A	SNP	TBC1D9B	ENST00000356834	human	ensembl	74_37	-1	known	missense	c.2246	p.A749V	1.000	superfamily_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_hand_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D9B	HGNC	ENSG00000197226	tier1	-	-	29	0	0.00	10	16	61.54	48	0	0.00	36	35	49.30
XPOT	0	genome.wustl.edu	37	12	64823969	64823969	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	12	64823969	64823969	G	T	SNP	XPOT	ENST00000332707	human	ensembl	74_37	+1	known	missense	c.1878	p.E626D	0.996	superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	XPOT	HGNC	ENSG00000184575	tier1	-	-	34	0	0.00	23	20	45.45	85	0	0.00	34	30	46.88
ADAM33	0	genome.wustl.edu	37	20	3652874	3652874	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	20	3652874	3652874	G	C	SNP	ADAM33	ENST00000356518	human	ensembl	74_37	-1	known	missense	c.1504	p.L502V	0.998	superfamily_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM33	HGNC	ENSG00000149451	tier1	-	-	41	0	0.00	34	16	32.00	84	0	0.00	42	30	41.67
ZFAS1	0	genome.wustl.edu	37	20	47895155	47895155	+	R	SNP	G	G	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	20	47895155	47895155	G	A	SNP	ZFAS1	ENST00000371743	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.537	-	-	-	no_errors	ZFAS1	HGNC	ENSG00000177410	tier1	-	-	64	0	0.00	22	22	50.00	69	0	0.00	59	42	41.18
SMG6	0	genome.wustl.edu	37	17	2203218	2203218	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	17	2203218	2203218	C	A	SNP	SMG6	ENST00000263073	human	ensembl	74_37	-1	known	nonsense	c.829	p.G277*	1.000	NULL	pfam_EST1,smart_PIN_dom	-	no_errors	SMG6	HGNC	ENSG00000070366	tier1	-	-	59	0	0.00	33	34	50.75	55	0	0.00	26	23	46.94
GPRIN3	0	genome.wustl.edu	37	4	90170621	90170621	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	4	90170621	90170621	G	A	SNP	GPRIN3	ENST00000333209	human	ensembl	74_37	-1	known	missense	c.641	p.S214F	0.001	NULL	NULL	-	no_errors	GPRIN3	HGNC	ENSG00000185477	tier1	-	-	54	0	0.00	27	10	27.03	91	0	0.00	43	37	45.68
FAM151A	0	genome.wustl.edu	37	1	55077385	55077385	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	1	55077385	55077385	G	C	SNP	FAM151A	ENST00000302250	human	ensembl	74_37	-1	known	missense	c.834	p.D278E	0.997	pfam_DUF2181	pfam_DUF2181	-	no_errors	FAM151A	HGNC	ENSG00000162391	tier1	-	-	29	0	0.00	24	12	33.33	51	0	0.00	21	25	54.35
NKAIN2	0	genome.wustl.edu	37	6	124979412	124979412	+	Silent	SNP	G	G	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	6	124979412	124979412	G	A	SNP	NKAIN2	ENST00000368417	human	ensembl	74_37	+1	known	silent	c.354	p.T118	0.436	pfam_Na/K-Atpase_Interacting	pfam_Na/K-Atpase_Interacting	-	no_errors	NKAIN2	HGNC	ENSG00000188580	tier1	rs142736368	-	37	0	0.00	37	17	31.48	60	0	0.00	36	18	33.33
ENSG00000245482	0	genome.wustl.edu	37	12	34175490	34175490	+	R	SNP	A	A	T			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	12	34175490	34175490	A	T	SNP	ENSG00000245482	ENST00000501954	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-847H18.2	Clone_based_vega_gene	ENSG00000245482	tier1	-	-	97	0	0.00	54	43	44.33	86	0	0.00	34	33	49.25
LINC00115	0	genome.wustl.edu	37	1	762305	762306	+	R	INS	-	-	AG			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	-	-	-	AG	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	1	762305	762306	-	AG	INS	LINC00115	ENST00000473798	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002:0.002	-	-	-	no_errors	LINC00115	HGNC	ENSG00000225880	tier1			76	0	0.00	49	36	42.35	36	0	0.00	29	21	42.00
TEX15	0	genome.wustl.edu	37	8	30694789	30694789	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	8	30694789	30694789	T	-	DEL	TEX15	ENST00000256246	human	ensembl	74_37	-1	known	frame_shift_del	c.7862	p.N2621fs	0.000	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863	tier1			37	0	0.00	33	12	26.67	68	0	0.00	35	28	44.44
CEP350	0	genome.wustl.edu	37	1	179989287	179989287	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	1	179989287	179989287	C	-	DEL	CEP350	ENST00000367607	human	ensembl	74_37	+1	known	frame_shift_del	c.2378	p.T793fs	0.983	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837	tier1			12	0	0.00	9	12	57.14	89	0	0.00	20	47	70.15
CPT1A	0	genome.wustl.edu	37	11	68529106	68529106	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	11	68529106	68529106	T	A	SNP	CPT1A	ENST00000265641	human	ensembl	74_37	-1	known	missense	c.1925	p.H642L	0.004	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT1A	HGNC	ENSG00000110090	tier1	-	-	44	0	0.00	14	34	70.83	70	0	0.00	7	26	78.79
FUT1	0	genome.wustl.edu	37	19	49253926	49253926	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	19	49253926	49253926	C	T	SNP	FUT1	ENST00000310160	human	ensembl	74_37	-1	known	missense	c.613	p.G205S	0.000	pfam_Glyco_trans_11	pfam_Glyco_trans_11	-	no_errors	FUT1	HGNC	ENSG00000174951	tier1	-	-	14	0	0.00	3	8	72.73	16	0	0.00	4	10	71.43
GRID1	0	genome.wustl.edu	37	10	87362184	87362184	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	10	87362184	87362184	G	A	SNP	GRID1	ENST00000327946	human	ensembl	74_37	-1	known	missense	c.2876	p.A959V	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID1	HGNC	ENSG00000182771	tier1	-	-	24	0	0.00	38	23	37.70	24	0	0.00	7	5	41.67
NLRP14	0	genome.wustl.edu	37	11	7092514	7092514	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	11	7092514	7092514	A	G	SNP	NLRP14	ENST00000299481	human	ensembl	74_37	+1	known	missense	c.3257	p.D1086G	0.566	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_CHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP14	HGNC	ENSG00000158077	tier1	-	-	51	0	0.00	12	21	63.64	48	0	0.00	7	11	61.11
ZNF761	0	genome.wustl.edu	37	19	53959188	53959188	+	R	SNP	G	G	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	19	53959188	53959188	G	A	SNP	ZNF761	ENST00000334095	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF761	HGNC	ENSG00000160336	tier1	rs144532705	-	34	0	0.00	18	49	73.13	6	0	0.00	1	2	66.67
ATXN7L1	0	genome.wustl.edu	37	7	105278824	105278824	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	7	105278824	105278824	C	T	SNP	ATXN7L1	ENST00000419735	human	ensembl	74_37	-1	known	missense	c.1178	p.R393K	1.000	NULL	pfam_SCA7_dom	-	no_errors	ATXN7L1	HGNC	ENSG00000146776	tier1	-	-	40	0	0.00	50	6	10.71	142	0	0.00	127	9	6.62
TMEM59L	0	genome.wustl.edu	37	19	18729058	18729058	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	19	18729058	18729058	A	G	SNP	TMEM59L	ENST00000262817	human	ensembl	74_37	+1	known	missense	c.758	p.N253S	0.870	pfam_Uncharacterised_TMEM59	pfam_Uncharacterised_TMEM59	-	no_errors	TMEM59L	HGNC	ENSG00000105696	tier1	-	-	33	0	0.00	26	21	44.68	36	1	2.70	36	22	37.93
AMZ1	0	genome.wustl.edu	37	7	2741864	2741918	+	R	DEL	TGCCCCAGCCAGGCTGGCATTTTGCAGCCATGCAGCCTGGCTCTGTGTCCTGCTG	TGCCCCAGCCAGGCTGGCATTTTGCAGCCATGCAGCCTGGCTCTGTGTCCTGCTG	-			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	TGCCCCAGCCAGGCTGGCATTTTGCAGCCATGCAGCCTGGCTCTGTGTCCTGCTG	TGCCCCAGCCAGGCTGGCATTTTGCAGCCATGCAGCCTGGCTCTGTGTCCTGCTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	7	2741864	2741918	TGCCCCAGCCAGGCTGGCATTTTGCAGCCATGCAGCCTGGCTCTGTGTCCTGCTG	-	DEL	AMZ1	ENST00000485540	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003:0.003:0.002:0.002:0.002:0.003:0.003:0.001:0.005:0.071:0.077:0.080:0.076:0.071:0.067:0.056:0.014:0.004:0.001:0.002:0.002:0.000:0.001:0.002:0.003:0.004:0.005:0.002:0.002:0.002:0.002:0.002:0.002:0.003:0.000:0.001:0.001:0.000:0.000:0.000:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.000:0.000:0.000:0.000:0.000	-	-	-	no_errors	AMZ1	HGNC	ENSG00000174945	tier1			0	0	0.00	5	0	0.00	0	0	0.00	5	0	0.00
