Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
YPEL5	0	genome.wustl.edu	37	2	30381844	30381844	+	R	SNP	A	A	C			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	2	30381844	30381844	A	C	SNP	YPEL5	ENST00000495673	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	YPEL5	HGNC	ENSG00000119801	tier1	-	-	24	0	0.00	20	6	23.08	58	0	0.00	41	13	24.07
BRINP3	0	genome.wustl.edu	37	1	190067649	190067649	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	1	190067649	190067649	C	A	SNP	BRINP3	ENST00000367462	human	ensembl	74_37	-1	known	missense	c.1800	p.K600N	0.998	NULL	pfam_MACPF,smart_MACPF	-	no_errors	BRINP3	HGNC	ENSG00000162670	tier1	-	-	47	0	0.00	34	8	19.05	138	1	0.72	142	19	11.80
LCT	0	genome.wustl.edu	37	2	136575110	136575110	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	2	136575110	136575110	G	A	SNP	LCT	ENST00000264162	human	ensembl	74_37	-1	known	missense	c.1508	p.A503V	1.000	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850	tier1	-	-	39	0	0.00	56	10	15.15	53	0	0.00	44	9	16.98
UNC80	0	genome.wustl.edu	37	2	210795724	210795724	+	Silent	SNP	C	C	G			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	2	210795724	210795724	C	G	SNP	UNC80	ENST00000439458	human	ensembl	74_37	+1	known	silent	c.5742	p.L1914	1.000	NULL	NULL	-	no_errors	UNC80	HGNC	ENSG00000144406	tier1	-	-	37	0	0.00	13	17	56.67	94	0	0.00	32	25	43.86
OR5AR1	0	genome.wustl.edu	37	11	56431448	56431448	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	11	56431448	56431448	G	C	SNP	OR5AR1	ENST00000302969	human	ensembl	74_37	+1	known	missense	c.287	p.S96T	0.048	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5AR1	HGNC	ENSG00000172459	tier1	-	-	43	0	0.00	29	11	27.50	90	0	0.00	41	17	29.31
ACCSL	0	genome.wustl.edu	37	11	44074988	44074988	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	11	44074988	44074988	C	A	SNP	ACCSL	ENST00000378832	human	ensembl	74_37	+1	known	missense	c.981	p.N327K	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	-	no_errors	ACCSL	HGNC	ENSG00000205126	tier1	-	-	35	0	0.00	31	17	35.42	99	0	0.00	27	29	51.79
MAML1	0	genome.wustl.edu	37	5	179196021	179196021	+	Silent	SNP	G	G	A			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	5	179196021	179196021	G	A	SNP	MAML1	ENST00000292599	human	ensembl	74_37	+1	known	silent	c.1902	p.R634	1.000	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML1	HGNC	ENSG00000161021	tier1	-	-	27	0	0.00	128	30	18.99	136	0	0.00	484	104	17.69
SEZ6L	0	genome.wustl.edu	37	22	26747191	26747191	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	22	26747191	26747191	C	T	SNP	SEZ6L	ENST00000248933	human	ensembl	74_37	+1	known	missense	c.2581	p.R861C	0.956	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6L	HGNC	ENSG00000100095	tier1	-	-	99	1	1.00	66	43	39.45	103	0	0.00	50	24	32.43
ASCC3	0	genome.wustl.edu	37	6	101247339	101247339	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	6	101247339	101247339	T	C	SNP	ASCC3	ENST00000369162	human	ensembl	74_37	-1	known	missense	c.1237	p.M413V	1.000	superfamily_P-loop_NTPase	pfam_Sec63-dom,pfam_D/R_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ASCC3	HGNC	ENSG00000112249	tier1	-	-	47	0	0.00	28	16	36.36	54	0	0.00	32	25	43.86
ENSG00000264151	0	genome.wustl.edu	37	18	24918656	24918656	+	R	SNP	A	A	G			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	18	24918656	24918656	A	G	SNP	ENSG00000264151	ENST00000580699	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-739N10.1	Clone_based_vega_gene	ENSG00000264151	tier1	-	-	19	0	0.00	10	9	47.37	61	0	0.00	46	14	23.33
ZDHHC15	0	genome.wustl.edu	37	X	74641738	74641738	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	X	74641738	74641738	C	G	SNP	ZDHHC15	ENST00000373367	human	ensembl	74_37	-1	known	missense	c.824	p.G275A	1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,superfamily_Plexin-like_fold,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC15	HGNC	ENSG00000102383	tier1	-	-	31	0	0.00	23	6	20.69	67	0	0.00	38	37	49.33
ACTA2-AS1	0	genome.wustl.edu	37	10	90694720	90694720	+	R	SNP	C	C	T			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	10	90694720	90694720	C	T	SNP	ACTA2-AS1	ENST00000437930	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ACTA2-AS1	HGNC	ENSG00000180139	tier1	-	-	68	0	0.00	23	32	58.18	70	0	0.00	46	25	35.21
MAML1	0	genome.wustl.edu	37	5	179196072	179196072	+	Silent	SNP	G	G	A			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	5	179196072	179196072	G	A	SNP	MAML1	ENST00000292599	human	ensembl	74_37	+1	known	silent	c.1953	p.Q651	1.000	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML1	HGNC	ENSG00000161021	tier1	-	-	20	0	0.00	102	22	17.74	93	0	0.00	394	77	16.31
OSBPL8	0	genome.wustl.edu	37	12	76844722	76844722	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	12	76844722	76844722	C	G	SNP	OSBPL8	ENST00000261183	human	ensembl	74_37	-1	known	missense	c.126	p.K42N	1.000	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL8	HGNC	ENSG00000091039	tier1	-	-	63	0	0.00	63	193	75.10	87	0	0.00	52	193	78.46
WEE2-AS1	0	genome.wustl.edu	37	7	141427061	141427061	+	R	SNP	T	T	G			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	7	141427061	141427061	T	G	SNP	WEE2-AS1	ENST00000478332	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	WEE2-AS1	HGNC	ENSG00000228775	tier1	-	-	85	0	0.00	19	19	50.00	149	0	0.00	38	52	57.78
KRCC1	0	genome.wustl.edu	37	2	88327569	88327569	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	2	88327569	88327569	C	A	SNP	KRCC1	ENST00000347055	human	ensembl	74_37	-1	known	nonsense	c.514	p.E172*	0.001	NULL	NULL	-	no_errors	KRCC1	HGNC	ENSG00000172086	tier1	-	-	48	0	0.00	52	5	8.77	120	0	0.00	72	14	16.28
AGO4	0	genome.wustl.edu	37	1	36316471	36316471	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	1	36316471	36316471	C	A	SNP	AGO4	ENST00000373210	human	ensembl	74_37	+1	known	nonsense	c.2294	p.S765*	1.000	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO4	HGNC	ENSG00000134698	tier1	-	-	53	0	0.00	37	4	9.76	84	1	1.18	48	12	20.00
XIRP2	0	genome.wustl.edu	37	2	167760312	167760312	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	2	167760312	167760312	T	C	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	missense	c.320	p.I107T	0.942	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092	tier1	-	-	68	0	0.00	35	7	16.67	85	0	0.00	61	21	25.61
BP2	0	genome.wustl.edu	37	12	56618715	56618715	+	Silent	SNP	G	G	A			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	12	56618715	56618715	G	A	SNP	BP2	ENST00000267023	human	ensembl	74_37	+1	known	silent	c.75	p.E25	1.000	superfamily_-bd_OB-fold	pfam_-bd_OB_tR,superfamily_-bd_OB-fold	-	no_errors	BP2	HGNC	ENSG00000139579	tier1	-	-	38	0	0.00	22	30	57.69	67	0	0.00	55	39	41.49
LRRFIP1	0	genome.wustl.edu	37	2	238667417	238667417	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	2	238667417	238667417	C	G	SNP	LRRFIP1	ENST00000308482	human	ensembl	74_37	+1	putative	missense	c.1270	p.R424G	1.000	pfam_Leu-rich_rep_flightless-int_pr,superfamily_Prefoldin	pfam_Leu-rich_rep_flightless-int_pr,superfamily_Prefoldin	-	no_errors	LRRFIP1	HGNC	ENSG00000124831	tier1	-	-	46	0	0.00	25	15	37.50	117	0	0.00	105	32	23.36
MAML1	0	genome.wustl.edu	37	5	179195930	179195930	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	5	179195930	179195930	G	A	SNP	MAML1	ENST00000292599	human	ensembl	74_37	+1	known	missense	c.1811	p.S604N	0.998	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML1	HGNC	ENSG00000161021	tier1	-	-	38	0	0.00	179	55	23.50	105	0	0.00	364	83	18.44
TAF1L	0	genome.wustl.edu	37	9	32634701	32634701	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	9	32634701	32634701	G	T	SNP	TAF1L	ENST00000242310	human	ensembl	74_37	-1	known	missense	c.877	p.Q293K	1.000	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728	tier1	-	-	82	0	0.00	49	14	22.22	104	0	0.00	31	6	16.22
TET2	0	genome.wustl.edu	37	4	106158294	106158294	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	4	106158294	106158294	G	T	SNP	TET2	ENST00000380013	human	ensembl	74_37	+1	known	missense	c.3195	p.L1065F	0.233	NULL	NULL	-	no_errors	TET2	HGNC	ENSG00000168769	tier1	-	-	19	0	0.00	10	7	41.18	84	0	0.00	74	20	21.28
NXF4	0	genome.wustl.edu	37	X	101820660	101820660	+	R	SNP	C	C	T			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	X	101820660	101820660	C	T	SNP	NXF4	ENST00000360035	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.929	-	-	-	no_errors	NXF4	HGNC	ENSG00000196970	tier1	-	-	44	0	0.00	63	79	55.63	43	0	0.00	39	77	66.38
SNX17	0	genome.wustl.edu	37	2	27599243	27599243	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	2	27599243	27599243	C	T	SNP	SNX17	ENST00000233575	human	ensembl	74_37	+1	known	missense	c.1246	p.P416S	1.000	NULL	pfam_Phox,superfamily_Phox,superfamily_FERM_central,smart_Phox,pfscan_Phox,pfscan_Ras-assoc	-	no_errors	SNX17	HGNC	ENSG00000115234	tier1	-	-	32	0	0.00	22	6	21.43	40	0	0.00	35	11	23.91
RPL36A	0	genome.wustl.edu	37	X	100646802	100646802	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	X	100646802	100646802	C	T	SNP	RPL36A	ENST00000427805	human	ensembl	74_37	+1	known	missense	c.277	p.R93W	0.999	pfam_Ribosomal_L44e,superfamily_Ribosomal_zn-bd	pfam_Ribosomal_L44e,superfamily_Ribosomal_zn-bd	-	no_errors	RPL36A	HGNC	ENSG00000241343	tier1	-	-	24	0	0.00	9	16	64.00	82	0	0.00	28	23	45.10
IRAK1	0	genome.wustl.edu	37	X	153276177	153276177	+	R	SNP	C	C	T			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	X	153276177	153276177	C	T	SNP	IRAK1	ENST00000477274	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	IRAK1	HGNC	ENSG00000184216	tier1	-	-	12	0	0.00	49	11	18.33	14	0	0.00	150	27	15.25
EMCN	0	genome.wustl.edu	37	4	101368702	101368702	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	4	101368702	101368702	T	C	SNP	EMCN	ENST00000296420	human	ensembl	74_37	-1	known	missense	c.403	p.T135A	0.001	pfam_Endomucin	pfam_Endomucin	-	no_errors	EMCN	HGNC	ENSG00000164035	tier1	-	-	40	0	0.00	20	8	28.57	58	0	0.00	24	16	40.00
ST6GALC3	0	genome.wustl.edu	37	1	76877795	76877795	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	1	76877795	76877795	A	G	SNP	ST6GALC3	ENST00000328299	human	ensembl	74_37	+1	known	missense	c.316	p.R106G	1.000	pfam_Glyco_trans_29	pfam_Glyco_trans_29	-	no_errors	ST6GALC3	HGNC	ENSG00000184005	tier1	-	-	51	0	0.00	44	35	44.30	121	0	0.00	74	39	34.51
BP2	0	genome.wustl.edu	37	12	56618713	56618713	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	12	56618713	56618713	G	A	SNP	BP2	ENST00000267023	human	ensembl	74_37	+1	known	missense	c.73	p.E25K	1.000	superfamily_-bd_OB-fold	pfam_-bd_OB_tR,superfamily_-bd_OB-fold	-	no_errors	BP2	HGNC	ENSG00000139579	tier1	-	-	38	0	0.00	23	32	58.18	67	0	0.00	57	39	40.62
MMP27	0	genome.wustl.edu	37	11	102573792	102573792	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	11	102573792	102573792	T	A	SNP	MMP27	ENST00000260229	human	ensembl	74_37	-1	known	missense	c.399	p.E133D	0.410	pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,pirsf_Pept_M10A_Metazoans,prints_Pept_M10A	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,pirsf_Pept_M10A_Metazoans,prints_Pept_M10A	-	no_errors	MMP27	HGNC	ENSG00000137675	tier1	-	-	35	0	0.00	18	9	33.33	125	0	0.00	95	17	15.18
KRT78	0	genome.wustl.edu	37	12	53237971	53237971	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	12	53237971	53237971	T	A	SNP	KRT78	ENST00000304620	human	ensembl	74_37	-1	known	missense	c.953	p.H318L	0.024	pfam_IF,prints_Keratin_II	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT78	HGNC	ENSG00000170423	tier1	-	-	51	0	0.00	37	9	19.57	82	0	0.00	59	18	23.38
TKTL2	0	genome.wustl.edu	37	4	164393216	164393216	+	Silent	SNP	G	G	T			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	4	164393216	164393216	G	T	SNP	TKTL2	ENST00000280605	human	ensembl	74_37	-1	known	silent	c.1671	p.G557	0.470	pfam_Transketolase_C,superfamily_Transketo_C/Pyr-ferredox_oxred	pfam_Transketolase_N,pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,pfam_DH_E1,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	TKTL2	HGNC	ENSG00000151005	tier1	-	-	55	0	0.00	39	38	49.35	111	0	0.00	60	48	44.44
OSBPL8	0	genome.wustl.edu	37	12	76844700	76844700	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	12	76844700	76844700	C	G	SNP	OSBPL8	ENST00000261183	human	ensembl	74_37	-1	known	missense	c.148	p.E50Q	1.000	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL8	HGNC	ENSG00000091039	tier1	-	-	61	0	0.00	72	221	75.43	96	0	0.00	58	208	78.20
AGO4	0	genome.wustl.edu	37	1	36316629	36316629	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	1	36316629	36316629	C	A	SNP	AGO4	ENST00000373210	human	ensembl	74_37	+1	known	missense	c.2452	p.H818N	1.000	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO4	HGNC	ENSG00000134698	tier1	-	-	38	0	0.00	32	5	13.51	93	0	0.00	93	14	13.08
ADAMTS18	0	genome.wustl.edu	37	16	77325207	77325207	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	16	77325207	77325207	C	A	SNP	ADAMTS18	ENST00000282849	human	ensembl	74_37	-1	known	missense	c.3358	p.V1120L	0.001	superfamily_Thrombospondin_1_rpt	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS18	HGNC	ENSG00000140873	tier1	rs199845592	-	50	0	0.00	35	10	22.22	91	0	0.00	40	15	27.27
SNX17	0	genome.wustl.edu	37	2	27599044	27599044	+	Silent	SNP	C	C	T			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	2	27599044	27599044	C	T	SNP	SNX17	ENST00000233575	human	ensembl	74_37	+1	known	silent	c.1176	p.I392	1.000	NULL	pfam_Phox,superfamily_Phox,superfamily_FERM_central,smart_Phox,pfscan_Phox,pfscan_Ras-assoc	-	no_errors	SNX17	HGNC	ENSG00000115234	tier1	-	-	28	0	0.00	27	8	22.86	80	0	0.00	84	18	17.65
CAMTA1	0	genome.wustl.edu	37	1	7723936	7723936	+	Silent	SNP	C	C	T			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	1	7723936	7723936	C	T	SNP	CAMTA1	ENST00000303635	human	ensembl	74_37	+1	known	silent	c.1329	p.A443	1.000	NULL	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA1	HGNC	ENSG00000171735	tier1	-	-	58	0	0.00	42	14	25.00	24	0	0.00	14	4	22.22
GTF3C1	0	genome.wustl.edu	37	16	27509985	27509985	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	16	27509985	27509985	G	A	SNP	GTF3C1	ENST00000356183	human	ensembl	74_37	-1	known	missense	c.2131	p.R711C	0.999	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235	tier1	-	-	49	0	0.00	40	6	13.04	92	0	0.00	45	12	21.05
MTMR12	0	genome.wustl.edu	37	5	32248179	32248179	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	5	32248179	32248179	A	T	SNP	MTMR12	ENST00000382142	human	ensembl	74_37	-1	known	missense	c.950	p.L317Q	0.781	NULL	pfam_Myotubularin_assoc	-	no_errors	MTMR12	HGNC	ENSG00000150712	tier1	-	-	38	0	0.00	24	34	58.62	101	0	0.00	66	91	57.96
BCR	0	genome.wustl.edu	37	22	23626245	23626245	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	22	23626245	23626245	G	T	SNP	BCR	ENST00000305877	human	ensembl	74_37	+1	known	missense	c.2197	p.D733Y	0.997	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_Bcr-Abl_oncoprot_oligo,pfam_DH-domain,pfam_C2_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_DH-domain,superfamily_Bcr-Abl_oncoprot_oligo,superfamily_C2_dom,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_dom,smart_RhoGAP_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom,pfscan_DH-domain	-	no_errors	BCR	HGNC	ENSG00000186716	tier1	-	-	68	0	0.00	43	33	43.42	33	0	0.00	23	11	32.35
PPFIBP2	0	genome.wustl.edu	37	11	7670079	7670079	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	11	7670079	7670079	G	-	DEL	PPFIBP2	ENST00000299492	human	ensembl	74_37	+1	known	frame_shift_del	c.1846	p.V616fs	0.985	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_SAM_2,pfam_SAM_type1,pfam_Integrase_Tn916-type_D-bd_N,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIBP2	HGNC	ENSG00000166387	tier1			15	0	0.00	12	8	40.00	129	0	0.00	100	17	14.53
METTL1	0	genome.wustl.edu	37	12	58164954	58164954	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	12	58164954	58164954	G	-	DEL	METTL1	ENST00000324871	human	ensembl	74_37	-1	known	frame_shift_del	c.197	p.P66fs	1.000	pfam_tR_(Gua-N-7)_MeTrfase	pfam_tR_(Gua-N-7)_MeTrfase,tigrfam_tR_(Gua-N-7)_MeTrfase	-	no_errors	METTL1	HGNC	ENSG00000037897	tier1			106	0	0.00	157	29	15.59	44	0	0.00	54	9	14.29
KRT8	0	genome.wustl.edu	37	12	53292604	53292604	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	12	53292604	53292604	G	T	SNP	KRT8	ENST00000293308	human	ensembl	74_37	-1	known	missense	c.1061	p.S354Y	0.035	pfam_IF,prints_Keratin_II,prints_Keratin_I	pfam_IF,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT8	HGNC	ENSG00000170421	tier1	-	-	55	0	0.00	42	14	25.00	6	0	0.00	2	3	60.00
LRTM2	0	genome.wustl.edu	37	12	1943689	1943689	+	Silent	SNP	G	G	A			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	12	1943689	1943689	G	A	SNP	LRTM2	ENST00000299194	human	ensembl	74_37	+1	known	silent	c.915	p.R305	0.996	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRTM2	HGNC	ENSG00000166159	tier1	-	-	40	0	0.00	31	29	48.33	14	0	0.00	5	2	28.57
SPECC1	0	genome.wustl.edu	37	17	20000011	20000011	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	17	20000011	20000011	G	A	SNP	SPECC1	ENST00000261503	human	ensembl	74_37	+1	known	missense	c.47	p.G16D	0.925	NULL	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SPECC1	HGNC	ENSG00000128487	tier1	-	-	50	0	0.00	43	24	35.82	13	0	0.00	9	8	47.06
PAPPA2	0	genome.wustl.edu	37	1	176525573	176525573	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	1	176525573	176525573	C	A	SNP	PAPPA2	ENST00000367662	human	ensembl	74_37	+1	known	missense	c.115	p.H39N	0.045	NULL	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183	tier1	-	-	67	0	0.00	86	13	13.13	113	0	0.00	133	14	9.52
COX20	0	genome.wustl.edu	37	1	245005524	245005524	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	1	245005524	245005524	G	C	SNP	COX20	ENST00000411948	human	ensembl	74_37	+1	known	missense	c.185	p.G62A	1.000	pfam_Cox20/FAM36A,prints_FAM36A	pfam_Cox20/FAM36A,prints_FAM36A	-	no_errors	COX20	HGNC	ENSG00000203667	tier1	-	-	45	0	0.00	27	4	12.90	111	0	0.00	83	9	9.78
EGR1	0	genome.wustl.edu	37	5	137801710	137801710	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	5	137801710	137801710	A	C	SNP	EGR1	ENST00000239938	human	ensembl	74_37	+1	known	missense	c.260	p.N87T	0.997	NULL	pfam_DUF3432,pfam_DUF3446,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR1	HGNC	ENSG00000120738	tier1	-	-	45	0	0.00	60	14	18.92	7	0	0.00	8	0	0.00
ATXN3	0	genome.wustl.edu	37	14	92537357	92537358	+	In_Frame_Ins	INS	-	-	CTGCTGCTGCTGCTGCTG			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	14	92537357	92537358	-	CTGCTGCTGCTGCTGCTG	INS	ATXN3	ENST00000545170	human	ensembl	74_37	-1	known	in_frame_ins	c.940_939	p.314in_frame_insQQQQQQ	0.831:0.984	NULL	pfam_Josephin,pfam_Ubiquitin-int_motif,smart_Ubiquitin-int_motif,pfscan_Josephin,pfscan_Ubiquitin-int_motif,prints_Josephin	-	no_errors	ATXN3	HGNC	ENSG00000066427	tier1			3	0	0.00	2	0	0.00	3	0	0.00	2	0	0.00
FAM230B	0	genome.wustl.edu	37	22	21538275	21538275	+	R	SNP	C	C	T			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	22	21538275	21538275	C	T	SNP	FAM230B	ENST00000451257	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM230B	HGNC	ENSG00000215498	tier1	-	-	18	0	0.00	22	5	18.52	0	0	0.00	0	0	0.00
KIF26A	0	genome.wustl.edu	37	14	104640551	104640551	+	Silent	SNP	C	C	T			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	14	104640551	104640551	C	T	SNP	KIF26A	ENST00000423312	human	ensembl	74_37	+1	known	silent	c.2097	p.I699	0.834	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF26A	HGNC	ENSG00000066735	tier1	-	-	75	0	0.00	56	33	37.08	0	0	0.00	5	0	0.00
ARID1B	0	genome.wustl.edu	37	6	157099426	157099427	+	In_Frame_Ins	INS	-	-	CAGCAG			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	6	157099426	157099427	-	CAGCAG	INS	ARID1B	ENST00000367148	human	ensembl	74_37	+1	known	in_frame_ins	c.363_364	p.125in_frame_insQQ	0.847:0.974	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_D-bd,superfamily_ARID/BRIGHT_D-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_D-bd,pfscan_ARID/BRIGHT_D-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618	tier1			0	0	0.00	3	2	40.00	0	0	0.00	3	2	40.00
TMC6	0	genome.wustl.edu	37	17	76113990	76113990	+	Silent	SNP	C	C	T			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	17	76113990	76113990	C	T	SNP	TMC6	ENST00000322914	human	ensembl	74_37	-1	known	silent	c.1914	p.A638	0.558	pfam_TMC	pfam_TMC	-	no_errors	TMC6	HGNC	ENSG00000141524	tier1	-	-	22	0	0.00	15	14	46.67	2	0	0.00	1	3	75.00
ASAP2	0	genome.wustl.edu	37	2	9496213	9496213	+	Silent	SNP	G	G	A			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	2	9496213	9496213	G	A	SNP	ASAP2	ENST00000281419	human	ensembl	74_37	+1	known	silent	c.1149	p.Q383	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ASAP2	HGNC	ENSG00000151693	tier1	-	-	63	0	0.00	48	12	20.00	147	0	0.00	89	3	3.26
CWC22	0	genome.wustl.edu	37	2	180819049	180819049	+	Silent	SNP	G	G	T			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	2	180819049	180819049	G	T	SNP	CWC22	ENST00000295749	human	ensembl	74_37	-1	known	silent	c.1572	p.S524	0.886	pfam_Initiation_fac_eIF4g_MI,smart_Initiation_fac_eIF4g_MI	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI	-	no_errors	CWC22	HGNC	ENSG00000163510	tier1	-	-	40	0	0.00	27	4	12.90	124	0	0.00	71	2	2.70
SLC26A7	0	genome.wustl.edu	37	8	92407428	92407428	+	R	SNP	C	C	G			TCGA-DX-A3LY-01B-11D-A27P-09	TCGA-DX-A3LY-10B-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	df4366c4-170f-4233-b577-a8ea277b069c	f1611d3f-a7d1-42ab-b07c-27d0ce090948	8	92407428	92407428	C	G	SNP	SLC26A7	ENST00000520249	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SLC26A7	HGNC	ENSG00000147606	tier1	-	-	40	0	0.00	28	6	17.65	102	0	0.00	65	2	2.99
