Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
RAD50	0	genome.wustl.edu	37	5	131927684	131927684	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3U5-01A-11D-A228-09	TCGA-DX-A3U5-10A-01D-A22A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3c963890-6e79-4b16-a4aa-bac04938b4d7	d88d98c1-20d6-4351-a37b-39915181ba3f	5	131927684	131927684	C	T	SNP	RAD50	ENST00000265335	human	ensembl	74_37	+1	known	missense	c.1751	p.S584L	0.853	superfamily_P-loop_NTPase,tigrfam_Rad50_eukaryotes	pfam_Rad50_Zn_hook,superfamily_P-loop_NTPase,superfamily_Prefoldin,pfscan_Zn_hook_Rad50,tigrfam_Rad50_eukaryotes	-	no_errors	RAD50	HGNC	ENSG00000113522	tier1	-	-	34	0	0.00	18	17	48.57	81	0	0.00	68	37	35.24
HEPHL1	0	genome.wustl.edu	37	11	93796822	93796822	+	Silent	SNP	G	G	A			TCGA-DX-A3U5-01A-11D-A228-09	TCGA-DX-A3U5-10A-01D-A22A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3c963890-6e79-4b16-a4aa-bac04938b4d7	d88d98c1-20d6-4351-a37b-39915181ba3f	11	93796822	93796822	G	A	SNP	HEPHL1	ENST00000315765	human	ensembl	74_37	+1	known	silent	c.564	p.S188	0.081	pfam_Cu-oxidase_3,superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPHL1	HGNC	ENSG00000181333	tier1	-	-	64	0	0.00	27	18	40.00	57	0	0.00	32	19	36.54
CYB5R4	0	genome.wustl.edu	37	6	84665137	84665137	+	Silent	SNP	C	C	T			TCGA-DX-A3U5-01A-11D-A228-09	TCGA-DX-A3U5-10A-01D-A22A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3c963890-6e79-4b16-a4aa-bac04938b4d7	d88d98c1-20d6-4351-a37b-39915181ba3f	6	84665137	84665137	C	T	SNP	CYB5R4	ENST00000369681	human	ensembl	74_37	+1	known	silent	c.1467	p.L489	0.969	pfam_OxRdtase_FAD/D-bd,prints_DH-Cyt_B5_reductase	pfam_Cyt_B5-like_heme/steroid-bd,pfam_OxRdtase_FAD-bd_dom,pfam_OxRdtase_FAD/D-bd,pfam_CS_dom,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_Riboflavin_synthase-like_b-brl,superfamily_HSP20-like_chaperone,pfscan_CS_dom,pfscan_Cyt_B5-like_heme/steroid-bd,prints_DH-Cyt_B5_reductase,prints_Cyt_B5-like_heme/steroid-bd	-	no_errors	CYB5R4	HGNC	ENSG00000065615	tier1	-	-	33	0	0.00	40	23	36.51	89	0	0.00	66	27	29.03
CYSTM1	0	genome.wustl.edu	37	5	139623048	139623048	+	R	SNP	G	G	A			TCGA-DX-A3U5-01A-11D-A228-09	TCGA-DX-A3U5-10A-01D-A22A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3c963890-6e79-4b16-a4aa-bac04938b4d7	d88d98c1-20d6-4351-a37b-39915181ba3f	5	139623048	139623048	G	A	SNP	CYSTM1	ENST00000504227	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CYSTM1	HGNC	ENSG00000120306	tier1	-	-	33	0	0.00	20	5	20.00	37	0	0.00	23	14	37.84
MYO16	0	genome.wustl.edu	37	13	109535494	109535494	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A3U5-01A-11D-A228-09	TCGA-DX-A3U5-10A-01D-A22A-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3c963890-6e79-4b16-a4aa-bac04938b4d7	d88d98c1-20d6-4351-a37b-39915181ba3f	13	109535494	109535494	C	A	SNP	MYO16	ENST00000356711	human	ensembl	74_37	+1	known	missense	c.1447	p.Q483K	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515	tier1	-	-	60	0	0.00	50	20	28.57	68	0	0.00	53	22	29.33
RLN1	0	genome.wustl.edu	37	9	5335273	5335273	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A3U5-01A-11D-A228-09	TCGA-DX-A3U5-10A-01D-A22A-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3c963890-6e79-4b16-a4aa-bac04938b4d7	d88d98c1-20d6-4351-a37b-39915181ba3f	9	5335273	5335273	C	G	SNP	RLN1	ENST00000223862	human	ensembl	74_37	-1	known	missense	c.536	p.R179T	0.000	pfam_Insulin-like,superfamily_Insulin-like,smart_Insulin-like,prints_Relaxin,prints_Insulin_family	pfam_Insulin-like,superfamily_Insulin-like,smart_Insulin-like,prints_Relaxin,prints_Insulin_family	-	no_errors	RLN1	HGNC	ENSG00000107018	tier1	-	-	55	0	0.00	37	13	25.49	100	0	0.00	64	32	33.33
NDN	0	genome.wustl.edu	37	15	23931460	23931460	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A3U5-01A-11D-A228-09	TCGA-DX-A3U5-10A-01D-A22A-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3c963890-6e79-4b16-a4aa-bac04938b4d7	d88d98c1-20d6-4351-a37b-39915181ba3f	15	23931460	23931460	C	A	SNP	NDN	ENST00000331837	human	ensembl	74_37	-1	known	missense	c.905	p.R302I	1.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	NDN	HGNC	ENSG00000182636	tier1	-	-	39	0	0.00	22	12	35.29	50	0	0.00	25	15	37.50
TOPBP1	0	genome.wustl.edu	37	3	133329919	133329919	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3U5-01A-11D-A228-09	TCGA-DX-A3U5-10A-01D-A22A-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3c963890-6e79-4b16-a4aa-bac04938b4d7	d88d98c1-20d6-4351-a37b-39915181ba3f	3	133329919	133329919	G	C	SNP	TOPBP1	ENST00000260810	human	ensembl	74_37	-1	known	missense	c.4102	p.R1368G	0.991	superfamily_BRCT_dom	pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_Secretoglobin,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TOPBP1	HGNC	ENSG00000163781	tier1	-	-	62	0	0.00	61	12	16.44	62	0	0.00	42	20	32.26
DMKN	0	genome.wustl.edu	37	19	35991479	35991479	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A3U5-01A-11D-A228-09	TCGA-DX-A3U5-10A-01D-A22A-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3c963890-6e79-4b16-a4aa-bac04938b4d7	d88d98c1-20d6-4351-a37b-39915181ba3f	19	35991479	35991479	C	G	SNP	DMKN	ENST00000339686	human	ensembl	74_37	-1	known	missense	c.1243	p.A415P	0.000	NULL	NULL	-	no_errors	DMKN	HGNC	ENSG00000161249	tier1	-	-	44	0	0.00	32	9	21.95	52	0	0.00	25	19	43.18
ADAMTS20	0	genome.wustl.edu	37	12	43821142	43821142	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3U5-01A-11D-A228-09	TCGA-DX-A3U5-10A-01D-A22A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3c963890-6e79-4b16-a4aa-bac04938b4d7	d88d98c1-20d6-4351-a37b-39915181ba3f	12	43821142	43821142	C	T	SNP	ADAMTS20	ENST00000389420	human	ensembl	74_37	-1	known	missense	c.4076	p.C1359Y	1.000	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS20	HGNC	ENSG00000173157	tier1	-	-	65	0	0.00	43	18	29.51	103	0	0.00	78	32	29.09
AZI1	0	genome.wustl.edu	37	17	79193762	79193762	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3U5-01A-11D-A228-09	TCGA-DX-A3U5-10A-01D-A22A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3c963890-6e79-4b16-a4aa-bac04938b4d7	d88d98c1-20d6-4351-a37b-39915181ba3f	17	79193762	79193762	C	T	SNP	AZI1	ENST00000269392	human	ensembl	74_37	-1	known	missense	c.95	p.R32H	0.998	NULL	superfamily_t-SRE	-	no_errors	AZI1	HGNC	ENSG00000141577	tier1	-	-	90	0	0.00	67	33	33.00	33	0	0.00	10	11	52.38
SLC38A5	0	genome.wustl.edu	37	X	48321358	48321358	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A3U5-01A-11D-A228-09	TCGA-DX-A3U5-10A-01D-A22A-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3c963890-6e79-4b16-a4aa-bac04938b4d7	d88d98c1-20d6-4351-a37b-39915181ba3f	X	48321358	48321358	A	T	SNP	SLC38A5	ENST00000317669	human	ensembl	74_37	-1	known	missense	c.499	p.F167I	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A5	HGNC	ENSG00000017483	tier1	-	-	32	0	0.00	10	15	60.00	37	0	0.00	12	20	62.50
KIR3DX1	0	genome.wustl.edu	37	19	55046966	55046966	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3U5-01A-11D-A228-09	TCGA-DX-A3U5-10A-01D-A22A-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3c963890-6e79-4b16-a4aa-bac04938b4d7	d88d98c1-20d6-4351-a37b-39915181ba3f	19	55046966	55046966	G	C	SNP	KIR3DX1	ENST00000335056	human	ensembl	74_37	+1	known	missense	c.511	p.A171P	0.000	smart_Ig_sub	pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	KIR3DX1	HGNC	ENSG00000104970	tier1	-	-	115	0	0.00	64	32	33.33	78	0	0.00	73	35	32.41
OR13A1	0	genome.wustl.edu	37	10	45799842	45799842	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A3U5-01A-11D-A228-09	TCGA-DX-A3U5-10A-01D-A22A-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3c963890-6e79-4b16-a4aa-bac04938b4d7	d88d98c1-20d6-4351-a37b-39915181ba3f	10	45799842	45799842	A	C	SNP	OR13A1	ENST00000374401	human	ensembl	74_37	-1	known	missense	c.29	p.I10R	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR13A1	HGNC	ENSG00000256574	tier1	-	-	38	0	0.00	21	15	41.67	84	0	0.00	78	43	35.54
CADPS	0	genome.wustl.edu	37	3	62467517	62467517	+	Silent	SNP	C	C	T			TCGA-DX-A3U5-01A-11D-A228-09	TCGA-DX-A3U5-10A-01D-A22A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3c963890-6e79-4b16-a4aa-bac04938b4d7	d88d98c1-20d6-4351-a37b-39915181ba3f	3	62467517	62467517	C	T	SNP	CADPS	ENST00000383710	human	ensembl	74_37	-1	known	silent	c.3054	p.V1018	1.000	NULL	pfam_Ca-dep_secretion_activator,superfamily_C2_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	CADPS	HGNC	ENSG00000163618	tier1	-	-	92	0	0.00	50	21	29.58	127	0	0.00	94	43	31.16
REEP3	0	genome.wustl.edu	37	10	65380613	65380613	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A3U5-01A-11D-A228-09	TCGA-DX-A3U5-10A-01D-A22A-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3c963890-6e79-4b16-a4aa-bac04938b4d7	d88d98c1-20d6-4351-a37b-39915181ba3f	10	65380613	65380613	C	G	SNP	REEP3	ENST00000373758	human	ensembl	74_37	+1	known	missense	c.752	p.P251R	1.000	NULL	pfam_TB2_DP1_HVA22	-	no_errors	REEP3	HGNC	ENSG00000165476	tier1	-	-	32	0	0.00	27	9	25.00	144	0	0.00	66	16	19.28
TTPA	0	genome.wustl.edu	37	8	63978639	63978639	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3U5-01A-11D-A228-09	TCGA-DX-A3U5-10A-01D-A22A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3c963890-6e79-4b16-a4aa-bac04938b4d7	d88d98c1-20d6-4351-a37b-39915181ba3f	8	63978639	63978639	C	T	SNP	TTPA	ENST00000260116	human	ensembl	74_37	-1	known	missense	c.376	p.V126I	0.989	pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran	-	no_errors	TTPA	HGNC	ENSG00000137561	tier1	rs138483857	-	119	0	0.00	87	36	29.27	112	0	0.00	68	23	25.27
ACADL	0	genome.wustl.edu	37	2	211069371	211069371	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A3U5-01A-11D-A228-09	TCGA-DX-A3U5-10A-01D-A22A-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3c963890-6e79-4b16-a4aa-bac04938b4d7	d88d98c1-20d6-4351-a37b-39915181ba3f	2	211069371	211069371	C	G	SNP	ACADL	ENST00000233710	human	ensembl	74_37	-1	known	missense	c.804	p.L268F	1.000	superfamily_AcylCoA_DH/oxidase_NM_dom	pfam_AcylCo_DH/oxidase_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C	-	no_errors	ACADL	HGNC	ENSG00000115361	tier1	-	-	50	0	0.00	35	11	23.91	116	0	0.00	97	25	20.33
MUC17	0	genome.wustl.edu	37	7	100682064	100682064	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A3U5-01A-11D-A228-09	TCGA-DX-A3U5-10A-01D-A22A-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3c963890-6e79-4b16-a4aa-bac04938b4d7	d88d98c1-20d6-4351-a37b-39915181ba3f	7	100682064	100682064	C	A	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	missense	c.7367	p.T2456N	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876	tier1	-	-	106	0	0.00	65	23	26.14	33	0	0.00	24	17	41.46
PIK3CD	0	genome.wustl.edu	37	1	9783348	9783348	+	Silent	SNP	G	G	A			TCGA-DX-A3U5-01A-11D-A228-09	TCGA-DX-A3U5-10A-01D-A22A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3c963890-6e79-4b16-a4aa-bac04938b4d7	d88d98c1-20d6-4351-a37b-39915181ba3f	1	9783348	9783348	G	A	SNP	PIK3CD	ENST00000536656	human	ensembl	74_37	+1	known	silent	c.2664	p.P888	0.206	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CD	HGNC	ENSG00000171608	tier1	rs201426574	-	60	0	0.00	43	23	34.85	78	0	0.00	55	21	27.63
UGT1A4	0	genome.wustl.edu	37	2	234627744	234627744	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3U5-01A-11D-A228-09	TCGA-DX-A3U5-10A-01D-A22A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3c963890-6e79-4b16-a4aa-bac04938b4d7	d88d98c1-20d6-4351-a37b-39915181ba3f	2	234627744	234627744	C	T	SNP	UGT1A4	ENST00000373409	human	ensembl	74_37	+1	known	missense	c.278	p.T93M	0.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A4	HGNC	ENSG00000244474	tier1	rs188914242	GMAF=0.0005	50	0	0.00	23	22	48.89	71	0	0.00	37	23	38.33
ITGB3BP	0	genome.wustl.edu	37	1	63906463	63906464	+	R	DEL	TT	TT	-			TCGA-DX-A3U5-01A-11D-A228-09	TCGA-DX-A3U5-10A-01D-A22A-09	TT	TT	TT	-	TT	TT	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3c963890-6e79-4b16-a4aa-bac04938b4d7	d88d98c1-20d6-4351-a37b-39915181ba3f	1	63906463	63906464	TT	-	DEL	ITGB3BP	ENST00000492655	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.052:0.039	-	-	-	no_errors	ITGB3BP	HGNC	ENSG00000142856	tier1			23	0	0.00	13	5	27.78	104	0	0.00	80	24	23.08
ENSG00000221219	0	genome.wustl.edu	37	4	54969779	54969786	+	R	DEL	CACACACA	CACACACA	-			TCGA-DX-A3U5-01A-11D-A228-09	TCGA-DX-A3U5-10A-01D-A22A-09	CACACACA	CACACACA	CACACACA	-	CACACACA	CACACACA	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3c963890-6e79-4b16-a4aa-bac04938b4d7	d88d98c1-20d6-4351-a37b-39915181ba3f	4	54969779	54969786	CACACACA	-	DEL	ENSG00000221219	ENST00000408292	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.001:0.000:0.001:0.000:0.000:0.000:0.002:0.001	-	-	-	no_errors	AC110298.1	Clone_based_ensembl_gene	ENSG00000221219	tier1			17	0	0.00	14	2	12.50	17	0	0.00	14	2	12.50
CYP4F2	0	genome.wustl.edu	37	19	16008347	16008347	+	Silent	SNP	G	G	A			TCGA-DX-A3U5-01A-11D-A228-09	TCGA-DX-A3U5-10A-01D-A22A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3c963890-6e79-4b16-a4aa-bac04938b4d7	d88d98c1-20d6-4351-a37b-39915181ba3f	19	16008347	16008347	G	A	SNP	CYP4F2	ENST00000221700	human	ensembl	74_37	-1	known	silent	c.75	p.V25	0.003	NULL	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F2	HGNC	ENSG00000186115	tier1	rs142765310	-	114	1	0.87	127	27	17.53	6	0	0.00	6	2	25.00
ENSG00000250026	0	genome.wustl.edu	37	4	69083697	69083697	+	R	SNP	C	C	G			TCGA-DX-A3U5-01A-11D-A228-09	TCGA-DX-A3U5-10A-01D-A22A-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3c963890-6e79-4b16-a4aa-bac04938b4d7	d88d98c1-20d6-4351-a37b-39915181ba3f	4	69083697	69083697	C	G	SNP	ENSG00000250026	ENST00000504453	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.505	-	-	-	no_errors	RP11-646E20.6	Clone_based_vega_gene	ENSG00000250026	tier1	-	-	51	0	0.00	57	7	10.94	71	0	0.00	82	7	7.87
SLC38A1	0	genome.wustl.edu	37	12	46662636	46662658	+	Splice_Site	DEL	CCTCGCACTTACATCGACATGCA	CCTCGCACTTACATCGACATGCA	-			TCGA-DX-A3U5-01A-11D-A228-09	TCGA-DX-A3U5-10A-01D-A22A-09	CCTCGCACTTACATCGACATGCA	CCTCGCACTTACATCGACATGCA	CCTCGCACTTACATCGACATGCA	-	CCTCGCACTTACATCGACATGCA	CCTCGCACTTACATCGACATGCA	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3c963890-6e79-4b16-a4aa-bac04938b4d7	d88d98c1-20d6-4351-a37b-39915181ba3f	12	46662636	46662658	CCTCGCACTTACATCGACATGCA	-	DEL	SLC38A1	ENST00000546893	human	ensembl	74_37	-1	known	splice_site_del	c.1+12_-10	e1-1	0.843:0.956:0.966:0.983:0.988:0.994:0.992:0.992:0.988:0.955:0.934:0.888:0.341:0.006:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000	-	-	-	no_errors	SLC38A1	HGNC	ENSG00000111371	tier1			50	0	0.00	40	4	9.09	50	0	0.00	40	4	9.09
LAMB1	0	genome.wustl.edu	37	7	107575793	107575805	+	R	DEL	TTTTTTTTTTTTT	TTTTTTTTTTTTT	-			TCGA-DX-A3U5-01A-11D-A228-09	TCGA-DX-A3U5-10A-01D-A22A-09	TTTTTTTTTTTTT	TTTTTTTTTTTTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3c963890-6e79-4b16-a4aa-bac04938b4d7	d88d98c1-20d6-4351-a37b-39915181ba3f	7	107575793	107575805	TTTTTTTTTTTTT	-	DEL	LAMB1	ENST00000491196	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.022:0.021:0.019:0.017:0.014:0.011:0.008:0.004:0.003:0.001:0.001:0.000:0.000	-	-	-	no_errors	LAMB1	HGNC	ENSG00000091136	tier1			11	0	0.00	7	0	0.00	11	0	0.00	7	0	0.00
ENSG00000221307	0	genome.wustl.edu	37	12	8476956	8476956	+	R	SNP	G	G	A			TCGA-DX-A3U5-01A-11D-A228-09	TCGA-DX-A3U5-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3c963890-6e79-4b16-a4aa-bac04938b4d7	d88d98c1-20d6-4351-a37b-39915181ba3f	12	8476956	8476956	G	A	SNP	ENSG00000221307	ENST00000408380	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.279	-	-	-	no_errors	AC092745.1	Clone_based_ensembl_gene	ENSG00000221307	tier1	-	-	42	0	0.00	56	9	13.85	0	0	0.00	3	0	0.00
ENSG00000270726	0	genome.wustl.edu	37	X	155255222	155255222	+	R	SNP	C	C	T			TCGA-DX-A3U5-01A-11D-A228-09	TCGA-DX-A3U5-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3c963890-6e79-4b16-a4aa-bac04938b4d7	d88d98c1-20d6-4351-a37b-39915181ba3f	X	155255222	155255222	C	T	SNP	ENSG00000270726	ENST00000285718	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	AJ271736.10	Clone_based_vega_gene	ENSG00000270726	tier1	-	-	59	0	0.00	45	13	22.41	0	0	0.00	0	0	0.00
MT-RNR1	0	genome.wustl.edu	37	MT	673	673	+	R	SNP	T	T	C			TCGA-DX-A3U5-01A-11D-A228-09	TCGA-DX-A3U5-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3c963890-6e79-4b16-a4aa-bac04938b4d7	d88d98c1-20d6-4351-a37b-39915181ba3f	MT	673	673	T	C	SNP	MT-RNR1	ENST00000389680	human	ensembl	74_37	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	MT-RNR1	HGNC	ENSG00000211459	tier1	-	-	406	0	0.00	114	412	78.33	0	0	0.00	0	0	0.00
CAB39	0	genome.wustl.edu	37	2	231683342	231683351	+	Frame_Shift_Del	DEL	GAGCAGTTTA	GAGCAGTTTA	-			TCGA-DX-A3U5-01A-11D-A228-09	TCGA-DX-A3U5-10A-01D-A22A-09	GAGCAGTTTA	GAGCAGTTTA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3c963890-6e79-4b16-a4aa-bac04938b4d7	d88d98c1-20d6-4351-a37b-39915181ba3f	2	231683342	231683351	GAGCAGTTTA	-	DEL	CAB39	ENST00000258418	human	ensembl	74_37	+1	known	frame_shift_del	c.949_958	p.E317fs	1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000:0.999:1.000	pfam_Mo25,superfamily_ARM-type_fold	pfam_Mo25,superfamily_ARM-type_fold	-	no_errors	CAB39	HGNC	ENSG00000135932	tier1			109	0	0.00	30	2	6.25	109	0	0.00	30	2	6.25
CAB39	0	genome.wustl.edu	37	2	231683327	231683340	+	Frame_Shift_Del	DEL	GACAGGACGGAGGA	GACAGGACGGAGGA	-			TCGA-DX-A3U5-01A-11D-A228-09	TCGA-DX-A3U5-10A-01D-A22A-09	GACAGGACGGAGGA	GACAGGACGGAGGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3c963890-6e79-4b16-a4aa-bac04938b4d7	d88d98c1-20d6-4351-a37b-39915181ba3f	2	231683327	231683340	GACAGGACGGAGGA	-	DEL	CAB39	ENST00000258418	human	ensembl	74_37	+1	known	frame_shift_del	c.934_947	p.D312fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.988:1.000:1.000:1.000:1.000:1.000	pfam_Mo25,superfamily_ARM-type_fold	pfam_Mo25,superfamily_ARM-type_fold	-	no_errors	CAB39	HGNC	ENSG00000135932	tier1			103	0	0.00	26	2	7.14	103	0	0.00	26	2	7.14
