Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
CLCN7	0	genome.wustl.edu	37	16	1497076	1497076	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	16	1497076	1497076	G	C	SNP	CLCN7	ENST00000262318	human	ensembl	74_37	-1	putative	missense	c.2191	p.P731A	0.098	NULL	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-7	-	no_errors	CLCN7	HGNC	ENSG00000103249	tier1	-	-	30	0	0.00	16	4	20.00	21	0	0.00	10	2	16.67
SNX27	0	genome.wustl.edu	37	1	151611519	151611519	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	1	151611519	151611519	A	G	SNP	SNX27	ENST00000368843	human	ensembl	74_37	+1	known	missense	c.467	p.D156G	1.000	superfamily_Phox,smart_Phox	pfam_Phox,pfam_PDZ,pfam_Ras-assoc,superfamily_Phox,superfamily_PDZ,smart_PDZ,smart_Phox,pfscan_PDZ,pfscan_Phox,pfscan_Ras-assoc	-	no_errors	SNX27	HGNC	ENSG00000143376	tier1	-	-	65	0	0.00	43	11	20.37	118	0	0.00	78	22	22.00
DPPA2	0	genome.wustl.edu	37	3	109028041	109028041	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	3	109028041	109028041	T	G	SNP	DPPA2	ENST00000478945	human	ensembl	74_37	-1	known	missense	c.318	p.Q106H	0.000	pfscan_SAP_dom	pfscan_SAP_dom	-	no_errors	DPPA2	HGNC	ENSG00000163530	tier1	-	-	75	0	0.00	57	19	25.00	156	0	0.00	67	35	33.98
SYNGR4	0	genome.wustl.edu	37	19	48876925	48876925	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	19	48876925	48876925	C	T	SNP	SYNGR4	ENST00000344846	human	ensembl	74_37	+1	known	missense	c.245	p.A82V	0.877	pfam_Marvel,pirsf_Synaptogyrin	pfam_Marvel,pirsf_Synaptogyrin	-	no_errors	SYNGR4	HGNC	ENSG00000105467	tier1	-	-	20	0	0.00	13	9	40.91	43	0	0.00	15	16	51.61
RUNX3	0	genome.wustl.edu	37	1	25229150	25229150	+	Silent	SNP	C	C	T			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	1	25229150	25229150	C	T	SNP	RUNX3	ENST00000338888	human	ensembl	74_37	-1	known	silent	c.753	p.S251	0.997	pirsf_TF_Runt-rel_RUNX	pfam_Runt_dom,pfam_RunxI_C_dom,superfamily_p53-like_TF_D-bd,pirsf_TF_Runt-rel_RUNX,pfscan_Runt_dom,prints_AML1_Runt	-	no_errors	RUNX3	HGNC	ENSG00000020633	tier1	-	-	166	0	0.00	39	24	38.10	112	0	0.00	28	13	31.71
TOX	0	genome.wustl.edu	37	8	59727987	59727987	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	8	59727987	59727987	C	A	SNP	TOX	ENST00000361421	human	ensembl	74_37	-1	known	missense	c.1302	p.Q434H	1.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TOX	HGNC	ENSG00000198846	tier1	-	-	50	0	0.00	46	14	23.33	58	0	0.00	31	6	15.79
MYCBP2	0	genome.wustl.edu	37	13	77799597	77799597	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	13	77799597	77799597	G	A	SNP	MYCBP2	ENST00000407578	human	ensembl	74_37	-1	known	nonsense	c.2830	p.Q944*	1.000	superfamily_RCC1/BLIP-II,superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_RCC1/BLIP-II,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810	tier1	-	-	61	0	0.00	78	32	29.09	127	0	0.00	104	45	30.20
SLC26A4	0	genome.wustl.edu	37	7	107353040	107353040	+	Silent	SNP	G	G	A			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	7	107353040	107353040	G	A	SNP	SLC26A4	ENST00000265715	human	ensembl	74_37	+1	known	silent	c.2292	p.T764	0.076	NULL	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A4	HGNC	ENSG00000091137	tier1	rs139556627	-	62	0	0.00	59	14	19.18	125	0	0.00	133	30	18.40
KANK4	0	genome.wustl.edu	37	1	62737171	62737171	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	1	62737171	62737171	T	G	SNP	KANK4	ENST00000371153	human	ensembl	74_37	-1	known	missense	c.1991	p.Q664P	1.000	NULL	pfam_KN_motif,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK4	HGNC	ENSG00000132854	tier1	-	-	119	0	0.00	149	68	31.19	176	0	0.00	197	67	25.38
MMP9	0	genome.wustl.edu	37	20	44641114	44641114	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	20	44641114	44641114	G	T	SNP	MMP9	ENST00000372330	human	ensembl	74_37	+1	known	missense	c.1223	p.G408V	1.000	pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,prints_Pept_M10A	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,pfam_Hemopexin-like_repeat,pfam_PT,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Kringle-like,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,smart_Hemopexin-like_repeat,pfscan_FN_type2_col-bd,prints_Pept_M10A	-	no_errors	MMP9	HGNC	ENSG00000100985	tier1	-	-	66	0	0.00	72	14	16.28	44	0	0.00	51	9	15.00
ENSG00000264542	0	genome.wustl.edu	37	11	106672147	106672147	+	R	SNP	G	G	T			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	11	106672147	106672147	G	T	SNP	ENSG00000264542	ENST00000578526	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	AP001282.1	Clone_based_ensembl_gene	ENSG00000264542	tier1	-	-	63	0	0.00	41	18	30.51	139	0	0.00	63	12	16.00
DLX1	0	genome.wustl.edu	37	2	172950516	172950516	+	Silent	SNP	C	C	T			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	2	172950516	172950516	C	T	SNP	DLX1	ENST00000361725	human	ensembl	74_37	+1	known	silent	c.111	p.H37	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DLX1	HGNC	ENSG00000144355	tier1	-	-	73	0	0.00	51	14	21.54	132	0	0.00	114	28	19.72
AGTPBP1	0	genome.wustl.edu	37	9	88247722	88247722	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	9	88247722	88247722	G	T	SNP	AGTPBP1	ENST00000376109	human	ensembl	74_37	-1	known	missense	c.1906	p.L636I	1.000	NULL	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGTPBP1	HGNC	ENSG00000135049	tier1	-	-	63	0	0.00	67	38	36.19	160	0	0.00	125	41	24.70
STAU2-AS1	0	genome.wustl.edu	37	8	74351352	74351352	+	R	SNP	C	C	A			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	8	74351352	74351352	C	A	SNP	STAU2-AS1	ENST00000522703	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.024	-	-	-	no_errors	STAU2-AS1	HGNC	ENSG00000253302	tier1	-	-	26	0	0.00	10	11	52.38	117	1	0.85	52	37	41.57
CCSER1	0	genome.wustl.edu	37	4	92520141	92520141	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	4	92520141	92520141	A	T	SNP	CCSER1	ENST00000333691	human	ensembl	74_37	+1	known	missense	c.2636	p.K879M	1.000	NULL	NULL	-	no_errors	CCSER1	HGNC	ENSG00000184305	tier1	-	-	55	0	0.00	36	8	18.18	172	0	0.00	128	30	18.87
ALMS1	0	genome.wustl.edu	37	2	73676274	73676274	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	2	73676274	73676274	A	T	SNP	ALMS1	ENST00000264448	human	ensembl	74_37	+1	known	missense	c.2617	p.T873S	0.000	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	tier1	-	-	36	0	0.00	38	11	22.45	142	0	0.00	99	16	13.91
ZFHX4	0	genome.wustl.edu	37	8	77768255	77768255	+	Nonsense_Mutation	SNP	C	C	G			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	8	77768255	77768255	C	G	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	nonsense	c.9098	p.S3033*	0.983	smart_Znf_U1	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	tier1	-	-	38	0	0.00	39	9	18.75	92	0	0.00	68	19	21.84
SLC39A10	0	genome.wustl.edu	37	2	196581640	196581640	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	2	196581640	196581640	C	T	SNP	SLC39A10	ENST00000359634	human	ensembl	74_37	+1	known	missense	c.1976	p.S659F	0.989	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A10	HGNC	ENSG00000196950	tier1	-	-	80	0	0.00	58	8	12.12	86	0	0.00	72	11	13.25
UBXN10	0	genome.wustl.edu	37	1	20517768	20517768	+	Silent	SNP	C	C	T			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	1	20517768	20517768	C	T	SNP	UBXN10	ENST00000375099	human	ensembl	74_37	+1	known	silent	c.714	p.H238	0.976	pfam_UBX,smart_UBX,pfscan_UBX	pfam_UBX,smart_UBX,pfscan_UBX	-	no_errors	UBXN10	HGNC	ENSG00000162543	tier1	-	-	47	0	0.00	13	9	40.91	205	0	0.00	42	38	46.91
LINGO1	0	genome.wustl.edu	37	15	77907078	77907078	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	15	77907078	77907078	G	A	SNP	LINGO1	ENST00000355300	human	ensembl	74_37	-1	known	missense	c.1171	p.R391W	0.995	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LINGO1	HGNC	ENSG00000169783	tier1	rs199628078	-	68	0	0.00	47	9	16.07	37	0	0.00	38	5	11.36
LY75	0	genome.wustl.edu	37	2	160750457	160750457	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	2	160750457	160750457	T	C	SNP	LY75	ENST00000554112	human	ensembl	74_37	-1	known	missense	c.605	p.Y202C	0.159	pfam_FN_type2_col-bd,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	LY75	HGNC	ENSG00000054219	tier1	-	-	39	0	0.00	29	20	40.82	145	0	0.00	49	43	46.74
SMG1	0	genome.wustl.edu	37	16	18840640	18840640	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	16	18840640	18840640	G	A	SNP	SMG1	ENST00000389467	human	ensembl	74_37	-1	known	nonsense	c.9571	p.Q3191*	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106	tier1	-	-	50	0	0.00	38	18	32.14	132	0	0.00	49	48	48.98
DKK2	0	genome.wustl.edu	37	4	107845150	107845150	+	Silent	SNP	G	G	A			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	4	107845150	107845150	G	A	SNP	DKK2	ENST00000285311	human	ensembl	74_37	-1	novel	silent	c.741	p.Y247	1.000	NULL	pfam_Dickkopf_N,superfamily_Zn2-C6_fun-type_D-bd	-	no_errors	DKK2	HGNC	ENSG00000155011	tier1	-	-	34	0	0.00	10	7	41.18	133	1	0.75	87	21	19.44
SLC44A5	0	genome.wustl.edu	37	1	75669436	75669436	+	Silent	SNP	T	T	C			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	1	75669436	75669436	T	C	SNP	SLC44A5	ENST00000370859	human	ensembl	74_37	-1	known	silent	c.2130	p.E710	0.000	NULL	pfam_Choline_transptr-like	-	no_errors	SLC44A5	HGNC	ENSG00000137968	tier1	-	-	55	0	0.00	30	60	66.67	146	0	0.00	58	152	72.38
C5orf45	0	genome.wustl.edu	37	5	179268934	179268934	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	5	179268934	179268934	C	T	SNP	C5orf45	ENST00000292586	human	ensembl	74_37	-1	known	missense	c.422	p.R141H	0.000	NULL	NULL	-	no_errors	C5orf45	HGNC	ENSG00000161010	tier1	-	-	46	0	0.00	13	21	61.76	70	1	1.41	24	31	56.36
ZEB1	0	genome.wustl.edu	37	10	31812861	31812861	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	10	31812861	31812861	G	A	SNP	ZEB1	ENST00000361642	human	ensembl	74_37	+1	known	missense	c.2605	p.D869N	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZEB1	HGNC	ENSG00000148516	tier1	-	-	22	0	0.00	25	5	16.67	102	0	0.00	34	15	30.61
GPX5	0	genome.wustl.edu	37	6	28500188	28500188	+	Silent	SNP	T	T	C			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	6	28500188	28500188	T	C	SNP	GPX5	ENST00000412168	human	ensembl	74_37	+1	known	silent	c.450	p.S150	0.971	pfam_Glutathione_peroxidase,superfamily_Thioredoxin-like_fold,pirsf_Glutathione_peroxidase	pfam_Glutathione_peroxidase,superfamily_Thioredoxin-like_fold,pirsf_Glutathione_peroxidase,prints_Glutathione_peroxidase	-	no_errors	GPX5	HGNC	ENSG00000224586	tier1	-	-	76	0	0.00	33	12	26.67	153	0	0.00	53	22	29.33
FAM120A	0	genome.wustl.edu	37	9	96291677	96291677	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	9	96291677	96291677	G	A	SNP	FAM120A	ENST00000333936	human	ensembl	74_37	+1	known	missense	c.1633	p.E545K	1.000	NULL	NULL	-	no_errors	FAM120A	HGNC	ENSG00000048828	tier1	-	-	45	0	0.00	66	7	9.46	69	0	0.00	51	8	13.56
IGSF9	0	genome.wustl.edu	37	1	159899796	159899796	+	R	SNP	G	G	A			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	1	159899796	159899796	G	A	SNP	IGSF9	ENST00000496645	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	IGSF9	HGNC	ENSG00000085552	tier1	-	-	68	0	0.00	38	40	51.28	67	0	0.00	32	25	43.86
TDRD6	0	genome.wustl.edu	37	6	46657281	46657281	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	6	46657281	46657281	G	C	SNP	TDRD6	ENST00000316081	human	ensembl	74_37	+1	known	missense	c.1416	p.E472D	0.003	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD6	HGNC	ENSG00000180113	tier1	-	-	39	0	0.00	22	8	26.67	142	0	0.00	43	15	25.86
MRGPRX4	0	genome.wustl.edu	37	11	18195098	18195098	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	11	18195098	18195098	G	A	SNP	MRGPRX4	ENST00000314254	human	ensembl	74_37	+1	known	missense	c.295	p.V99I	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	MRGPRX4	HGNC	ENSG00000179817	tier1	-	-	43	0	0.00	20	9	31.03	103	0	0.00	38	32	45.71
CCNH	0	genome.wustl.edu	37	5	86707051	86707051	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	5	86707051	86707051	C	T	SNP	CCNH	ENST00000256897	human	ensembl	74_37	-1	known	missense	c.230	p.R77K	0.999	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_CyclinC,tigrfam_CyclinH/Ccl1	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_CyclinC,tigrfam_CyclinH/Ccl1	-	no_errors	CCNH	HGNC	ENSG00000134480	tier1	-	-	74	0	0.00	41	28	40.58	231	0	0.00	72	54	42.86
PKHD1	0	genome.wustl.edu	37	6	51892681	51892681	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	6	51892681	51892681	T	A	SNP	PKHD1	ENST00000371117	human	ensembl	74_37	-1	known	missense	c.3574	p.I1192F	0.984	superfamily_Ig_E-set,smart_IPT	pfam_IPT,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927	tier1	-	-	47	0	0.00	6	6	50.00	143	0	0.00	6	49	89.09
PRPF4B	0	genome.wustl.edu	37	6	4037782	4037782	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	6	4037782	4037782	A	G	SNP	PRPF4B	ENST00000337659	human	ensembl	74_37	+1	known	missense	c.1390	p.R464G	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PRPF4B	HGNC	ENSG00000112739	tier1	-	-	34	0	0.00	0	10	100.00	82	0	0.00	5	41	89.13
TP53	0	genome.wustl.edu	37	17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	17	7578406	7578406	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.524	p.R175H	1.000	pfam_p53_D-bd,superfamily_p53-like_TF_D-bd,prints_p53_tumour_suppressor	pfam_p53_D-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_D-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	rs28934578	-	27	0	0.00	4	25	86.21	55	0	0.00	8	40	83.33
BPIFB6	0	genome.wustl.edu	37	20	31622058	31622058	+	Silent	SNP	C	C	T			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	20	31622058	31622058	C	T	SNP	BPIFB6	ENST00000349552	human	ensembl	74_37	+1	known	silent	c.264	p.F88	1.000	pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom	pfam_Lipid-bd_serum_glycop_N,pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_C	-	no_errors	BPIFB6	HGNC	ENSG00000167104	tier1	-	-	44	0	0.00	50	9	15.25	124	0	0.00	137	15	9.87
NRDE2	0	genome.wustl.edu	37	14	90756883	90756883	+	Silent	SNP	C	C	T			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	14	90756883	90756883	C	T	SNP	NRDE2	ENST00000354366	human	ensembl	74_37	-1	known	silent	c.1911	p.V637	0.000	NULL	pfam_NRDE-2	-	no_errors	NRDE2	HGNC	ENSG00000119720	tier1	-	-	29	0	0.00	22	6	21.43	107	0	0.00	98	8	7.55
CHRFAM7A	0	genome.wustl.edu	37	15	30665316	30665316	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	15	30665316	30665316	G	A	SNP	CHRFAM7A	ENST00000299847	human	ensembl	74_37	-1	known	missense	c.193	p.R65C	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	-	no_errors	CHRFAM7A	HGNC	ENSG00000166664	tier1	-	-	65	0	0.00	57	9	13.64	96	0	0.00	60	6	9.09
SOX5	0	genome.wustl.edu	37	12	23998927	23998927	+	Silent	SNP	G	G	A			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	12	23998927	23998927	G	A	SNP	SOX5	ENST00000451604	human	ensembl	74_37	-1	known	silent	c.471	p.N157	0.994	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX5	HGNC	ENSG00000134532	tier1	rs149450279	-	28	0	0.00	28	4	12.50	99	1	1.00	60	4	6.25
SYCP1	0	genome.wustl.edu	37	1	115537600	115537601	+	Frame_Shift_Ins	INS	-	-	A			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	1	115537600	115537601	-	A	INS	SYCP1	ENST00000369518	human	ensembl	74_37	+1	known	frame_shift_ins	c.2891_2892	p.K968fs	1.000:1.000	NULL	pfam_SCP-1	-	no_errors	SYCP1	HGNC	ENSG00000198765	tier1			44	0	0.00	31	3	8.82	95	0	0.00	43	8	15.69
ATXN8OS	0	genome.wustl.edu	37	13	70713512	70713512	+	R	SNP	A	A	G			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	13	70713512	70713512	A	G	SNP	ATXN8OS	ENST00000414504	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ATXN8OS	HGNC	ENSG00000230223	tier1	rs2021426	-	36	0	0.00	41	6	12.77	0	0	0.00	2	0	0.00
MT-CO1	0	genome.wustl.edu	37	MT	7198	7198	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	MT	7198	7198	G	A	SNP	MT-CO1	ENST00000361624	human	ensembl	74_37	+1	known	missense	c.1295	p.G432D	NULL	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom,prints_Cyt_c_Oxase_su1	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom,prints_Cyt_c_Oxase_su1	-	no_errors	MT-CO1	HGNC	ENSG00000198804	tier1	-	-	47	0	0.00	13	2	13.33	1	0	0.00	1	0	0.00
IGFN1	0	genome.wustl.edu	37	1	201166387	201166387	+	Silent	SNP	C	C	T			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	1	201166387	201166387	C	T	SNP	IGFN1	ENST00000335211	human	ensembl	74_37	+1	known	silent	c.309	p.C103	0.676	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGFN1	HGNC	ENSG00000163395	tier1	-	-	44	0	0.00	42	4	8.70	58	0	0.00	43	3	6.52
PAK1	0	genome.wustl.edu	37	11	77048422	77048422	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A6BB-01A-12D-A32I-09	TCGA-DX-A6BB-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b14de9fa-e0f4-4b94-90c3-e3f0392b5f17	2aa256b7-1d6e-4de9-89f3-c13f1318af23	11	77048422	77048422	C	A	SNP	PAK1	ENST00000278568	human	ensembl	74_37	-1	known	missense	c.1163	p.R388I	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_CRIB_dom,superfamily_Kinase-like_dom,superfamily_WASP_C,smart_CRIB_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRIB_dom,pfscan_Prot_kinase_dom	-	no_errors	PAK1	HGNC	ENSG00000149269	tier1	-	-	40	0	0.00	36	4	10.00	113	0	0.00	74	2	2.63
