Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
PIN1	0	genome.wustl.edu	37	19	9960266	9960266	+	R	SNP	C	C	T			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	19	9960266	9960266	C	T	SNP	PIN1	ENST00000380889	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.806	-	-	-	no_errors	PIN1	HGNC	ENSG00000127445	tier1	-	-	52	0	0.00	397	70	14.99	69	0	0.00	379	50	11.66
YOD1	0	genome.wustl.edu	37	1	207222921	207222921	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	1	207222921	207222921	C	T	SNP	YOD1	ENST00000315927	human	ensembl	74_37	-1	known	missense	c.491	p.S164N	1.000	pfam_OTU,pfscan_OTU	pfam_OTU,pfscan_OTU	-	no_errors	YOD1	HGNC	ENSG00000180667	tier1	-	-	59	0	0.00	49	8	14.04	115	0	0.00	86	23	21.10
C9orf41	0	genome.wustl.edu	37	9	77611400	77611400	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	9	77611400	77611400	C	G	SNP	C9orf41	ENST00000376834	human	ensembl	74_37	-1	known	missense	c.987	p.W329C	1.000	pfam_N2227	pfam_N2227	-	no_errors	C9orf41	HGNC	ENSG00000156017	tier1	-	-	49	0	0.00	484	108	18.21	98	0	0.00	591	114	16.17
KRT81	0	genome.wustl.edu	37	12	52681806	52681806	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	12	52681806	52681806	G	A	SNP	KRT81	ENST00000327741	human	ensembl	74_37	-1	known	missense	c.862	p.R288C	1.000	pfam_IF,superfamily_Prefoldin	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT81	HGNC	ENSG00000205426	tier1	rs144716678	-	54	0	0.00	55	9	14.06	31	0	0.00	30	5	14.29
FCRL3	0	genome.wustl.edu	37	1	157666077	157666077	+	Silent	SNP	G	G	A			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	1	157666077	157666077	G	A	SNP	FCRL3	ENST00000492769	human	ensembl	74_37	-1	known	silent	c.885	p.T295	0.000	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL3	HGNC	ENSG00000160856	tier1	-	-	43	0	0.00	31	13	29.55	96	0	0.00	84	16	15.69
RAP1B	0	genome.wustl.edu	37	12	69053162	69053162	+	R	SNP	C	C	T			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	12	69053162	69053162	C	T	SNP	RAP1B	ENST00000463493	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	RAP1B	HGNC	ENSG00000127314	tier1	-	-	38	0	0.00	336	165	32.93	118	0	0.00	805	365	31.17
OLFM2	0	genome.wustl.edu	37	19	9968504	9968504	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	19	9968504	9968504	C	G	SNP	OLFM2	ENST00000264833	human	ensembl	74_37	-1	known	missense	c.247	p.E83Q	1.000	pfam_Noelin-1	pfam_Olfac-like,pfam_Noelin-1,superfamily_Quinonprotein_ADH-like_supfam,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFM2	HGNC	ENSG00000105088	tier1	-	-	48	0	0.00	421	79	15.74	99	0	0.00	668	104	13.42
RIMS1	0	genome.wustl.edu	37	6	73043350	73043350	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	6	73043350	73043350	G	T	SNP	RIMS1	ENST00000521978	human	ensembl	74_37	+1	known	missense	c.4178	p.R1393I	1.000	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS1	HGNC	ENSG00000079841	tier1	-	-	32	0	0.00	24	7	22.58	97	0	0.00	93	21	18.42
PPIL2	0	genome.wustl.edu	37	22	22007679	22007679	+	R	SNP	C	C	T			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	22	22007679	22007679	C	T	SNP	PPIL2	ENST00000498589	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PPIL2	HGNC	ENSG00000100023	tier1	-	-	81	0	0.00	79	31	28.18	52	0	0.00	58	12	17.14
CCDC125	0	genome.wustl.edu	37	5	68616304	68616304	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	5	68616304	68616304	C	T	SNP	CCDC125	ENST00000396496	human	ensembl	74_37	-1	known	missense	c.64	p.D22N	1.000	NULL	NULL	-	no_errors	CCDC125	HGNC	ENSG00000183323	tier1	-	-	34	0	0.00	28	5	15.15	77	0	0.00	55	13	19.12
SYT1	0	genome.wustl.edu	37	12	79611315	79611315	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	12	79611315	79611315	C	T	SNP	SYT1	ENST00000261205	human	ensembl	74_37	+1	known	missense	c.16	p.H6Y	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT1	HGNC	ENSG00000067715	tier1	-	-	22	0	0.00	35	13	27.08	58	0	0.00	45	45	50.00
PTPRO	0	genome.wustl.edu	37	12	15704508	15704508	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	12	15704508	15704508	G	T	SNP	PTPRO	ENST00000281171	human	ensembl	74_37	+1	known	missense	c.2461	p.V821L	0.998	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRO	HGNC	ENSG00000151490	tier1	-	-	65	0	0.00	55	10	15.38	149	0	0.00	124	28	18.30
SLC16A13	0	genome.wustl.edu	37	17	6943237	6943237	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	17	6943237	6943237	G	C	SNP	SLC16A13	ENST00000308027	human	ensembl	74_37	+1	known	missense	c.1237	p.D413H	0.005	NULL	pfam_MFS,pfam_Atg22-like,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A13	HGNC	ENSG00000174327	tier1	-	-	28	0	0.00	16	30	65.22	75	0	0.00	104	85	44.97
FLG2	0	genome.wustl.edu	37	1	152324804	152324804	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	1	152324804	152324804	G	A	SNP	FLG2	ENST00000388718	human	ensembl	74_37	-1	known	missense	c.5458	p.H1820Y	0.006	prints_Filaggrin	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520	tier1	-	-	74	0	0.00	83	23	21.70	71	0	0.00	64	8	11.11
PGA5	0	genome.wustl.edu	37	11	61017218	61017218	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	11	61017218	61017218	C	T	SNP	PGA5	ENST00000312403	human	ensembl	74_37	+1	known	missense	c.851	p.T284I	0.087	pfam_Aspartic_peptidase,superfamily_Peptidase_aspartic_dom,prints_Aspartic_peptidase	pfam_Aspartic_peptidase,pfam_Aspartic_peptidase_N,superfamily_Peptidase_aspartic_dom,prints_Aspartic_peptidase	-	no_errors	PGA5	HGNC	ENSG00000256713	tier1	-	-	68	0	0.00	56	16	22.22	11	0	0.00	18	6	25.00
DCTN2	0	genome.wustl.edu	37	12	57932336	57932336	+	R	SNP	C	C	T			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	12	57932336	57932336	C	T	SNP	DCTN2	ENST00000551400	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DCTN2	HGNC	ENSG00000175203	tier1	-	-	49	0	0.00	165	57	25.68	92	0	0.00	424	145	25.35
TRHDE	0	genome.wustl.edu	37	12	73014948	73014948	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	12	73014948	73014948	T	C	SNP	TRHDE	ENST00000261180	human	ensembl	74_37	+1	known	missense	c.2395	p.F799L	0.981	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	TRHDE	HGNC	ENSG00000072657	tier1	-	-	47	0	0.00	335	61	15.40	112	1	0.88	497	130	20.70
COL11A2	0	genome.wustl.edu	37	6	33144998	33144998	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	6	33144998	33144998	A	C	SNP	COL11A2	ENST00000341947	human	ensembl	74_37	-1	known	missense	c.1976	p.L659R	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A2	HGNC	ENSG00000204248	tier1	-	-	58	0	0.00	50	11	18.03	99	0	0.00	98	26	20.97
NKAIN3	0	genome.wustl.edu	37	8	63659614	63659614	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	8	63659614	63659614	G	A	SNP	NKAIN3	ENST00000328472	human	ensembl	74_37	+1	known	missense	c.397	p.V133I	0.974	pfam_Na/K-Atpase_Interacting	pfam_Na/K-Atpase_Interacting	-	no_errors	NKAIN3	HGNC	ENSG00000185942	tier1	-	-	43	0	0.00	40	10	20.00	69	0	0.00	62	16	20.51
SCN4A	0	genome.wustl.edu	37	17	62049824	62049824	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	17	62049824	62049824	T	C	SNP	SCN4A	ENST00000435607	human	ensembl	74_37	-1	known	missense	c.280	p.I94V	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN4A	HGNC	ENSG00000007314	tier1	-	-	51	0	0.00	56	10	15.15	107	0	0.00	75	19	20.21
EMC8	0	genome.wustl.edu	37	16	85813472	85813472	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	16	85813472	85813472	C	A	SNP	EMC8	ENST00000253457	human	ensembl	74_37	-1	known	missense	c.475	p.D159Y	1.000	pfam_UPF0172	pfam_UPF0172	-	no_errors	EMC8	HGNC	ENSG00000131148	tier1	-	-	22	0	0.00	22	4	15.38	76	0	0.00	67	16	19.28
C9orf41	0	genome.wustl.edu	37	9	77611441	77611441	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	9	77611441	77611441	C	G	SNP	C9orf41	ENST00000376834	human	ensembl	74_37	-1	known	missense	c.946	p.D316H	1.000	pfam_N2227	pfam_N2227	-	no_errors	C9orf41	HGNC	ENSG00000156017	tier1	-	-	54	0	0.00	454	87	16.08	100	0	0.00	560	78	12.21
MARCH2	0	genome.wustl.edu	37	19	8495621	8495621	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	19	8495621	8495621	T	A	SNP	MARCH2	ENST00000215555	human	ensembl	74_37	+1	known	missense	c.452	p.L151Q	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,pfscan_Znf_RING	-	no_errors	MARCH2	HGNC	ENSG00000099785	tier1	-	-	44	0	0.00	37	15	28.85	37	0	0.00	36	11	23.40
VSIG10L	0	genome.wustl.edu	37	19	51844520	51844520	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	19	51844520	51844520	C	G	SNP	VSIG10L	ENST00000335624	human	ensembl	74_37	-1	novel	missense	c.782	p.R261P	0.000	smart_Ig_sub	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	VSIG10L	HGNC	ENSG00000186806	tier1	-	-	26	0	0.00	37	10	21.28	25	0	0.00	19	5	20.83
BBS9	0	genome.wustl.edu	37	7	33303966	33303966	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	7	33303966	33303966	G	A	SNP	BBS9	ENST00000242067	human	ensembl	74_37	+1	known	missense	c.682	p.G228S	1.000	NULL	NULL	-	no_errors	BBS9	HGNC	ENSG00000122507	tier1	-	-	144	0	0.00	164	43	20.77	150	1	0.66	152	13	7.88
DMWD	0	genome.wustl.edu	37	19	46289542	46289544	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	19	46289542	46289544	CTC	-	DEL	DMWD	ENST00000270223	human	ensembl	74_37	-1	known	in_frame_del	c.1212_1210	p.E404in_frame_del	1.000:1.000:1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMWD	HGNC	ENSG00000185800	tier1			17	0	0.00	22	2	8.33	8	0	0.00	8	0	0.00
TSC22D4	0	genome.wustl.edu	37	7	100075194	100075194	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	7	100075194	100075194	G	-	DEL	TSC22D4	ENST00000300181	human	ensembl	74_37	-1	known	frame_shift_del	c.468	p.T157fs	0.536	NULL	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D4	HGNC	ENSG00000166925	tier1			8	0	0.00	13	2	13.33	14	0	0.00	4	0	0.00
G11	0	genome.wustl.edu	37	19	3121300	3121300	+	R	DEL	T	T	-			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	19	3121300	3121300	T	-	DEL	G11	ENST00000586180	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	G11	HGNC	ENSG00000088256	tier1			14	0	0.00	22	4	15.38	0	0	0.00	1	0	0.00
HOXB6	0	genome.wustl.edu	37	17	46675273	46675273	+	Silent	SNP	G	G	A			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	17	46675273	46675273	G	A	SNP	HOXB6	ENST00000225648	human	ensembl	74_37	-1	known	silent	c.240	p.F80	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXB6	HGNC	ENSG00000108511	tier1	-	-	37	0	0.00	19	5	20.83	2	0	0.00	0	0	0.00
NDUFA7	0	genome.wustl.edu	37	19	8386199	8386199	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	19	8386199	8386199	G	T	SNP	NDUFA7	ENST00000301457	human	ensembl	74_37	-1	known	missense	c.44	p.A15E	0.759	pfam_DH-UbQ_OxRdtase_B14.5a_su	pfam_DH-UbQ_OxRdtase_B14.5a_su	-	no_errors	NDUFA7	HGNC	ENSG00000267855	tier1	-	-	25	0	0.00	18	8	30.77	2	0	0.00	1	0	0.00
RN7SKP221	0	genome.wustl.edu	37	22	21899852	21899852	+	R	SNP	C	C	A			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	22	21899852	21899852	C	A	SNP	RN7SKP221	ENST00000410420	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.314	-	-	-	no_errors	RN7SKP221	HGNC	ENSG00000222352	tier1	-	-	38	0	0.00	32	4	11.11	1	0	0.00	0	0	0.00
MT-RNR2	0	genome.wustl.edu	37	MT	3079	3079	+	R	SNP	G	G	A			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	MT	3079	3079	G	A	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	MT-RNR2	HGNC	ENSG00000210082	tier1	-	-	39	0	0.00	63	30	32.26	4	0	0.00	5	4	44.44
KIAA1109	0	genome.wustl.edu	37	4	123280877	123280877	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	4	123280877	123280877	G	T	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	missense	c.14801	p.R4934I	1.000	pfam_Fragile_site-assoc_C	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688	tier1	-	-	36	0	0.00	40	4	9.09	86	0	0.00	120	2	1.64
