Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
NPY4R	0	genome.wustl.edu	37	10	47087136	47087136	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	10	47087136	47087136	C	A	SNP	NPY4R	ENST00000374312	human	ensembl	74_37	+1	known	missense	c.353	p.A118D	0.979	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_NPY4_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NPY4R	HGNC	ENSG00000204174	tier1	-	-	41	0	0.00	33	8	19.51	147	0	0.00	51	8	13.56
RELN	0	genome.wustl.edu	37	7	103183203	103183203	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	7	103183203	103183203	G	A	SNP	RELN	ENST00000424685	human	ensembl	74_37	-1	known	nonsense	c.6646	p.R2216*	0.991	superfamily_Sialidases	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056	tier1	-	-	58	0	0.00	44	20	31.25	150	1	0.66	98	45	31.47
FGD5	0	genome.wustl.edu	37	3	14960294	14960294	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	3	14960294	14960294	G	T	SNP	FGD5	ENST00000285046	human	ensembl	74_37	+1	known	missense	c.3523	p.A1175S	0.530	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD5	HGNC	ENSG00000154783	tier1	-	-	95	0	0.00	35	79	69.30	85	0	0.00	31	59	65.56
ZNF740	0	genome.wustl.edu	37	12	53580211	53580211	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	12	53580211	53580211	G	A	SNP	ZNF740	ENST00000416904	human	ensembl	74_37	+1	known	missense	c.410	p.R137H	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF740	HGNC	ENSG00000139651	tier1	-	-	53	0	0.00	56	14	20.00	90	0	0.00	67	9	11.84
INPP5D	0	genome.wustl.edu	37	2	234072418	234072418	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	2	234072418	234072418	G	A	SNP	INPP5D	ENST00000359570	human	ensembl	74_37	+1	known	missense	c.1270	p.D424N	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Endo/exonuclease/phosphatase,pfam_SH2,superfamily_Endo/exonuclease/phosphatase,smart_SH2,smart_IPPc,pfscan_SH2,prints_SH2	-	no_errors	INPP5D	HGNC	ENSG00000168918	tier1	-	-	59	0	0.00	70	14	16.67	108	0	0.00	91	25	21.37
CCDC27	0	genome.wustl.edu	37	1	3679935	3679935	+	Silent	SNP	G	G	A			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	1	3679935	3679935	G	A	SNP	CCDC27	ENST00000294600	human	ensembl	74_37	+1	known	silent	c.1218	p.S406	0.000	NULL	superfamily_Prefoldin	-	no_errors	CCDC27	HGNC	ENSG00000162592	tier1	rs201495912	GMAF=0.0005	61	0	0.00	78	24	23.53	116	0	0.00	100	17	14.53
TDRD1	0	genome.wustl.edu	37	10	115962849	115962849	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	10	115962849	115962849	G	A	SNP	TDRD1	ENST00000251864	human	ensembl	74_37	+1	known	missense	c.715	p.V239I	0.262	NULL	pfam_Tudor,pfam_Znf_MYND,smart_Tudor,pfscan_Tudor,pfscan_Znf_MYND	-	no_errors	TDRD1	HGNC	ENSG00000095627	tier1	-	-	66	0	0.00	62	40	39.22	95	0	0.00	59	30	33.71
ZNF645	0	genome.wustl.edu	37	X	22291373	22291373	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	X	22291373	22291373	G	A	SNP	ZNF645	ENST00000323684	human	ensembl	74_37	+1	known	missense	c.265	p.G89R	0.002	pfscan_Znf_RING	pfscan_Znf_RING,pfscan_Znf_C2H2	-	no_errors	ZNF645	HGNC	ENSG00000175809	tier1	-	-	68	0	0.00	83	13	13.40	90	0	0.00	97	20	17.09
FAM204A	0	genome.wustl.edu	37	10	120070202	120070202	+	R	SNP	C	C	G			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	10	120070202	120070202	C	G	SNP	FAM204A	ENST00000491416	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	FAM204A	HGNC	ENSG00000165669	tier1	-	-	11	0	0.00	12	4	25.00	26	0	0.00	14	2	12.50
FSCB	0	genome.wustl.edu	37	14	44976108	44976108	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	14	44976108	44976108	G	A	SNP	FSCB	ENST00000340446	human	ensembl	74_37	-1	known	missense	c.83	p.T28I	0.003	NULL	NULL	-	no_errors	FSCB	HGNC	ENSG00000189139	tier1	-	-	67	0	0.00	91	26	22.22	117	0	0.00	74	20	21.05
LOC100130331	0	genome.wustl.edu	37	1	238090237	238090237	+	R	SNP	G	G	T			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	1	238090237	238090237	G	T	SNP	LOC100130331	ENST00000450451	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-193H5.1	Clone_based_vega_gene	ENSG00000237250	tier1	-	-	17	0	0.00	17	8	32.00	26	0	0.00	14	4	22.22
PRPF31	0	genome.wustl.edu	37	19	54625279	54625279	+	Silent	SNP	C	C	T			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	19	54625279	54625279	C	T	SNP	PRPF31	ENST00000321030	human	ensembl	74_37	+1	known	silent	c.279	p.I93	0.904	pfam_NOSIC,smart_NOSIC	pfam_Nop_dom,pfam_Prp31_C,pfam_NOSIC,smart_NOSIC	-	no_errors	PRPF31	HGNC	ENSG00000105618	tier1	-	-	29	0	0.00	39	11	22.00	43	0	0.00	60	17	22.08
SCTR	0	genome.wustl.edu	37	2	120209612	120209612	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	2	120209612	120209612	G	A	SNP	SCTR	ENST00000019103	human	ensembl	74_37	-1	known	missense	c.895	p.R299C	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_secretin_rcpt,prints_GPCR_2_VIP_rcpt_1	-	no_errors	SCTR	HGNC	ENSG00000080293	tier1	rs144810736	-	41	0	0.00	29	16	35.56	96	0	0.00	60	18	23.08
ANGPTL4	0	genome.wustl.edu	37	19	8430863	8430863	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	19	8430863	8430863	G	A	SNP	ANGPTL4	ENST00000301455	human	ensembl	74_37	+1	known	missense	c.344	p.R115K	1.000	NULL	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPTL4	HGNC	ENSG00000167772	tier1	-	-	49	0	0.00	54	42	43.30	116	0	0.00	89	112	55.45
TNFRSF21	0	genome.wustl.edu	37	6	47200704	47200704	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	6	47200704	47200704	C	T	SNP	TNFRSF21	ENST00000296861	human	ensembl	74_37	-1	known	missense	c.1765	p.V589I	1.000	superfamily_DEATH-like_dom	pfam_Death_domain,superfamily_DEATH-like_dom,smart_TNFR/NGFR_Cys_rich_reg,smart_Death_domain,pfscan_Death_domain,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_21	-	no_errors	TNFRSF21	HGNC	ENSG00000146072	tier1	-	-	40	0	0.00	15	22	59.46	83	0	0.00	14	27	65.85
TRIM64C	0	genome.wustl.edu	37	11	49075541	49075541	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	11	49075541	49075541	C	A	SNP	TRIM64C	ENST00000530230	human	ensembl	74_37	-1	known	missense	c.1069	p.D357Y	0.014	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM64C	HGNC	ENSG00000214891	tier1	-	-	103	1	0.96	62	37	37.37	43	0	0.00	19	13	40.62
ENSG00000231486	0	genome.wustl.edu	37	2	89156778	89156778	+	R	SNP	C	C	A			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	2	89156778	89156778	C	A	SNP	ENSG00000231486	ENST00000430694	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC096579.7	Clone_based_vega_gene	ENSG00000231486	tier1	-	-	12	0	0.00	6	6	50.00	51	0	0.00	29	15	34.09
NELL1	0	genome.wustl.edu	37	11	20939733	20939733	+	Silent	SNP	C	C	T			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	11	20939733	20939733	C	T	SNP	NELL1	ENST00000357134	human	ensembl	74_37	+1	known	silent	c.609	p.I203	0.991	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_EGF-like_Ca-bd_dom,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL1	HGNC	ENSG00000165973	tier1	-	-	64	0	0.00	45	8	15.09	105	0	0.00	75	11	12.64
ENSG00000255622	0	genome.wustl.edu	37	5	140536443	140536443	+	Silent	SNP	C	C	A			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	5	140536443	140536443	C	A	SNP	ENSG00000255622	ENST00000539533	human	ensembl	74_37	+1	known	silent	c.867	p.I289	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB17	Uniprot_gn	ENSG00000255622	tier1	-	-	45	0	0.00	47	24	33.80	110	0	0.00	90	34	27.42
FBN3	0	genome.wustl.edu	37	19	8197971	8197971	+	Silent	SNP	G	G	A			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	19	8197971	8197971	G	A	SNP	FBN3	ENST00000270509	human	ensembl	74_37	-1	known	silent	c.1611	p.T537	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449	tier1	-	-	74	0	0.00	76	92	54.76	38	0	0.00	31	20	39.22
IGDCC3	0	genome.wustl.edu	37	15	65621813	65621813	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	15	65621813	65621813	C	T	SNP	IGDCC3	ENST00000327987	human	ensembl	74_37	-1	known	missense	c.2120	p.R707Q	0.003	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGDCC3	HGNC	ENSG00000174498	tier1	-	-	70	0	0.00	108	27	20.00	15	0	0.00	23	3	11.54
PASD1	0	genome.wustl.edu	37	X	150840783	150840783	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	X	150840783	150840783	G	C	SNP	PASD1	ENST00000370357	human	ensembl	74_37	+1	known	missense	c.1566	p.Q522H	0.004	NULL	superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	PASD1	HGNC	ENSG00000166049	tier1	-	-	48	0	0.00	26	11	29.73	76	0	0.00	59	18	23.38
COL7A1	0	genome.wustl.edu	37	3	48622990	48622990	+	Silent	SNP	C	C	T			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	3	48622990	48622990	C	T	SNP	COL7A1	ENST00000328333	human	ensembl	74_37	-1	known	silent	c.3894	p.R1298	1.000	pfam_Collagen	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270	tier1	-	-	57	0	0.00	70	13	15.48	42	0	0.00	50	19	27.54
EVI5L	0	genome.wustl.edu	37	19	7916385	7916385	+	Silent	SNP	G	G	A			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	19	7916385	7916385	G	A	SNP	EVI5L	ENST00000538904	human	ensembl	74_37	+1	known	silent	c.819	p.S273	0.046	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	EVI5L	HGNC	ENSG00000142459	tier1	-	-	58	0	0.00	101	42	29.37	107	0	0.00	139	49	26.06
PDE1C	0	genome.wustl.edu	37	7	32109993	32109993	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	7	32109993	32109993	T	C	SNP	PDE1C	ENST00000321453	human	ensembl	74_37	-1	known	missense	c.13	p.T5A	1.000	NULL	pfam_PDEase_catalytic_dom,pfam_PDEase_N,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE1C	HGNC	ENSG00000154678	tier1	-	-	63	0	0.00	110	39	26.17	88	0	0.00	80	31	27.93
ARAP2	0	genome.wustl.edu	37	4	36212251	36212251	+	Silent	SNP	T	T	G			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	4	36212251	36212251	T	G	SNP	ARAP2	ENST00000303965	human	ensembl	74_37	-1	known	silent	c.1248	p.S416	0.988	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_SAM_2,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP2	HGNC	ENSG00000047365	tier1	-	-	69	0	0.00	40	10	20.00	126	1	0.79	59	31	34.44
DSCAM	0	genome.wustl.edu	37	21	41496170	41496170	+	Silent	SNP	G	G	A			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	21	41496170	41496170	G	A	SNP	DSCAM	ENST00000400454	human	ensembl	74_37	-1	known	silent	c.3648	p.N1216	0.975	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAM	HGNC	ENSG00000171587	tier1	rs201137339	GMAF=0.0005	98	0	0.00	85	26	23.21	130	0	0.00	81	18	18.18
EGFL8	0	genome.wustl.edu	37	6	32134340	32134340	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	6	32134340	32134340	C	T	SNP	EGFL8	ENST00000333845	human	ensembl	74_37	+1	known	missense	c.167	p.P56L	0.997	pfam_EMI_domain,pfscan_EMI_domain	pfam_EMI_domain,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	EGFL8	HGNC	ENSG00000241404	tier1	-	-	55	0	0.00	27	24	47.06	101	0	0.00	38	56	59.57
SLC12A5	0	genome.wustl.edu	37	20	44669254	44669254	+	Splice_Site	SNP	G	G	A			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	20	44669254	44669254	G	A	SNP	SLC12A5	ENST00000454036	human	ensembl	74_37	+1	known	splice_site	c.923+1	e7+1	1.000	-	-	-	no_errors	SLC12A5	HGNC	ENSG00000124140	tier1	rs142641765	-	20	0	0.00	38	17	30.91	79	0	0.00	65	26	28.57
USH2A	0	genome.wustl.edu	37	1	216500945	216500945	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	1	216500945	216500945	G	T	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	missense	c.836	p.A279E	1.000	superfamily_ConA-like_lec_gl_sf,smart_LamG-like,smart_Laminin_N,pfscan_Laminin_N	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	tier1	-	-	58	0	0.00	41	22	34.92	139	0	0.00	75	19	20.00
GIMAP8	0	genome.wustl.edu	37	7	150174830	150174830	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	7	150174830	150174830	G	A	SNP	GIMAP8	ENST00000307271	human	ensembl	74_37	+1	known	missense	c.1960	p.E654K	0.000	pfam_AIG1	pfam_AIG1,superfamily_P-loop_NTPase	-	no_errors	GIMAP8	HGNC	ENSG00000171115	tier1	-	-	131	0	0.00	124	82	39.61	193	0	0.00	108	99	47.83
OR8D1	0	genome.wustl.edu	37	11	124179847	124179847	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	11	124179847	124179847	C	A	SNP	OR8D1	ENST00000357821	human	ensembl	74_37	-1	known	missense	c.816	p.K272N	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8D1	HGNC	ENSG00000196341	tier1	-	-	79	0	0.00	46	24	34.29	171	0	0.00	61	28	31.46
ASTN2	0	genome.wustl.edu	37	9	119204815	119204815	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	9	119204815	119204815	A	G	SNP	ASTN2	ENST00000313400	human	ensembl	74_37	-1	known	missense	c.3515	p.V1172A	1.000	superfamily_Fibronectin_type3	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219	tier1	-	-	47	0	0.00	82	10	10.87	67	0	0.00	67	8	10.67
PTGIR	0	genome.wustl.edu	37	19	47124905	47124905	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	19	47124905	47124905	C	T	SNP	PTGIR	ENST00000291294	human	ensembl	74_37	-1	known	missense	c.793	p.A265T	0.008	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Prostglndn_IP_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Prostglndn_IP_rcpt,prints_Prostanoid_rcpt,prints_Thbox_rcpt	-	no_errors	PTGIR	HGNC	ENSG00000160013	tier1	rs200508770	-	59	0	0.00	93	13	12.15	73	0	0.00	86	10	10.20
EPOR	0	genome.wustl.edu	37	19	11489388	11489388	+	Silent	SNP	G	G	A			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	19	11489388	11489388	G	A	SNP	EPOR	ENST00000222139	human	ensembl	74_37	-1	known	silent	c.894	p.T298	1.000	pirsf_Erythropoietin_rcpt	pirsf_Erythropoietin_rcpt,pfam_Growth/epo_recpt_lig-bind,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	EPOR	HGNC	ENSG00000187266	tier1	-	-	52	0	0.00	85	22	20.56	98	1	1.01	131	41	23.84
SOX30	0	genome.wustl.edu	37	5	157065660	157065660	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	5	157065660	157065660	C	A	SNP	SOX30	ENST00000265007	human	ensembl	74_37	-1	known	missense	c.1458	p.Q486H	0.997	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX30	HGNC	ENSG00000039600	tier1	-	-	41	0	0.00	86	18	17.31	90	0	0.00	99	12	10.81
PGM5	0	genome.wustl.edu	37	9	71080114	71080114	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	9	71080114	71080114	C	A	SNP	PGM5	ENST00000396396	human	ensembl	74_37	+1	known	missense	c.1149	p.S383R	1.000	pfam_A-D-PHexomutase_a/b/a-III,superfamily_A-D-PHexomutase_a/b/a-I/II/III	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_a/b/a-II,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM5	HGNC	ENSG00000154330	tier1	-	-	50	0	0.00	37	22	37.29	103	0	0.00	67	41	37.96
HDAC5	0	genome.wustl.edu	37	17	42158226	42158226	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	17	42158226	42158226	G	C	SNP	HDAC5	ENST00000225983	human	ensembl	74_37	-1	known	missense	c.2635	p.Q879E	1.000	pfam_His_deacetylse_dom,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC5	HGNC	ENSG00000108840	tier1	-	-	65	0	0.00	75	15	16.67	95	0	0.00	71	28	28.28
GPR114	0	genome.wustl.edu	37	16	57609003	57609003	+	Silent	SNP	C	C	T			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	16	57609003	57609003	C	T	SNP	GPR114	ENST00000340339	human	ensembl	74_37	+1	known	silent	c.1485	p.Y495	0.931	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_orphan_rcpt_GPR56	-	no_errors	GPR114	HGNC	ENSG00000159618	tier1	-	-	40	0	0.00	28	8	22.22	54	0	0.00	40	11	21.57
ZNF12	0	genome.wustl.edu	37	7	6732294	6732294	+	Silent	SNP	C	C	T			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	7	6732294	6732294	C	T	SNP	ZNF12	ENST00000405858	human	ensembl	74_37	-1	known	silent	c.279	p.Q93	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF12	HGNC	ENSG00000164631	tier1	-	-	48	0	0.00	78	8	9.30	132	0	0.00	122	22	15.28
TP53	0	genome.wustl.edu	37	17	7577074	7577075	+	Frame_Shift_Ins	INS	-	-	TTCTC			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	-	-	-	TTCTC	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	17	7577074	7577075	-	TTCTC	INS	TP53	ENST00000269305	human	ensembl	74_37	-1	known	frame_shift_ins	c.864_863	p.N288fs	0.990:0.994	pfam_p53_D-bd	pfam_p53_D-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_D-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1			121	0	0.00	68	72	51.43	121	0	0.00	68	72	51.43
LINC00577	0	genome.wustl.edu	37	6	105388066	105388084	+	R	DEL	GTTCGGAATGATGTCCAGG	GTTCGGAATGATGTCCAGG	-			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	GTTCGGAATGATGTCCAGG	GTTCGGAATGATGTCCAGG	GTTCGGAATGATGTCCAGG	-	GTTCGGAATGATGTCCAGG	GTTCGGAATGATGTCCAGG	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	6	105388066	105388084	GTTCGGAATGATGTCCAGG	-	DEL	LINC00577	ENST00000369123	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.005:0.004:0.004:0.005:0.001:0.001:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000	-	-	-	no_errors	LINC00577	HGNC	ENSG00000203809	tier1			99	0	0.00	45	9	16.67	99	0	0.00	45	9	16.67
PIP5K1B	0	genome.wustl.edu	37	9	71437582	71437583	+	Frame_Shift_Ins	INS	-	-	A			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	9	71437582	71437583	-	A	INS	PIP5K1B	ENST00000478500	human	ensembl	74_37	+1	known	frame_shift_ins	c.52_53	p.T20fs	1.000:1.000	NULL	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP5K1B	HGNC	ENSG00000107242	tier1			56	0	0.00	51	27	34.62	125	0	0.00	70	28	28.57
ENSG00000259479	0	genome.wustl.edu	37	15	45123755	45123756	+	R	INS	-	-	C			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	15	45123755	45123756	-	C	INS	ENSG00000259479	ENST00000561384	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.632:0.983	-	-	-	no_errors	CTD-2008A1.2	Clone_based_vega_gene	ENSG00000259479	tier1			47	0	0.00	29	5	14.71	11	0	0.00	9	2	18.18
P2RY4	0	genome.wustl.edu	37	X	69479428	69479428	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	X	69479428	69479428	G	T	SNP	P2RY4	ENST00000374519	human	ensembl	74_37	-1	known	missense	c.47	p.P16Q	0.001	prints_P2Y4_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_P2Y4_rcpt,prints_GPCR_Rhodpsn,prints_P2Y2_rcpt	-	no_errors	P2RY4	HGNC	ENSG00000186912	tier1	-	-	70	0	0.00	124	12	8.82	84	0	0.00	170	18	9.42
PLK1S1	0	genome.wustl.edu	37	20	21142511	21142511	+	Splice_Site	SNP	G	G	A			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	20	21142511	21142511	G	A	SNP	PLK1S1	ENST00000246027	human	ensembl	74_37	+1	known	splice_site	c.NULL	NULL	0.991	-	-	-	no_errors	PLK1S1	HGNC	ENSG00000088970	tier1	-	-	79	0	0.00	77	11	12.50	93	0	0.00	72	8	9.76
TPTE	0	genome.wustl.edu	37	21	11020842	11020842	+	R	SNP	A	A	T			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	21	11020842	11020842	A	T	SNP	TPTE	ENST00000415664	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TPTE	HGNC	ENSG00000166157	tier1	-	-	219	1	0.45	245	22	8.24	107	0	0.00	88	7	7.37
THSD7A	0	genome.wustl.edu	37	7	11633081	11633081	+	Silent	SNP	G	G	T			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	7	11633081	11633081	G	T	SNP	THSD7A	ENST00000423059	human	ensembl	74_37	-1	known	silent	c.1071	p.I357	0.422	NULL	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7A	HGNC	ENSG00000005108	tier1	-	-	23	0	0.00	38	8	17.39	115	0	0.00	114	11	8.80
RHBG	0	genome.wustl.edu	37	1	156354347	156354348	+	Frame_Shift_Ins	INS	-	-	C			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	1	156354347	156354348	-	C	INS	RHBG	ENST00000400992	human	ensembl	74_37	+1	known	frame_shift_ins	c.1168_1169	p.R393fs	0.006:0.723	superfamily_NH4_transpt_AmtB-like_dom	pfam_NH4_transpt_AmtB-like_dom,superfamily_NH4_transpt_AmtB-like_dom,prints_RhesusRHD	-	no_errors	RHBG	HGNC	ENSG00000132677	tier1			71	0	0.00	97	21	17.80	114	2	1.72	91	18	16.51
LPIN1	0	genome.wustl.edu	37	2	11955338	11955338	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	2	11955338	11955338	C	T	SNP	LPIN1	ENST00000449576	human	ensembl	74_37	+1	known	missense	c.2521	p.P841S	1.000	pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2	pfam_LNS2,pfam_Lipin_N,superfamily_HAD-like_dom,superfamily_WD40_repeat_dom,smart_LNS2	-	no_errors	LPIN1	HGNC	ENSG00000134324	tier1	-	-	33	0	0.00	32	4	11.11	9	0	0.00	4	0	0.00
ENSG00000215941	0	genome.wustl.edu	37	3	38948824	38948843	+	R	DEL	TGTGTGTGTGTATATATCTA	TGTGTGTGTGTATATATCTA	-			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	TGTGTGTGTGTATATATCTA	TGTGTGTGTGTATATATCTA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	3	38948824	38948843	TGTGTGTGTGTATATATCTA	-	DEL	ENSG00000215941	ENST00000401122	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.137:0.126:0.125:0.119:0.107:0.069:0.062:0.049:0.028:0.020:0.007:0.002:0.001:0.001:0.002:0.002:0.002:0.001:0.001:0.001	-	-	-	no_errors	AC116038.1	Clone_based_ensembl_gene	ENSG00000215941	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
ENSG00000221664	0	genome.wustl.edu	37	1	77857160	77857161	+	R	INS	-	-	TGTGTA			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	1	77857160	77857161	-	TGTGTA	INS	ENSG00000221664	ENST00000408737	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.993:0.992	-	-	-	no_errors	AC095030.1	Clone_based_ensembl_gene	ENSG00000221664	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
GALNT6	0	genome.wustl.edu	37	12	51785401	51785402	+	R	INS	-	-	AGCCGC			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	12	51785401	51785402	-	AGCCGC	INS	GALNT6	ENST00000603203	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.021:0.127	-	-	-	no_errors	GALNT6	HGNC	ENSG00000139629	tier1			0	0	0.00	2	1	33.33	0	0	0.00	2	1	33.33
GOLGA8I	0	genome.wustl.edu	37	15	23259867	23259867	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	15	23259867	23259867	G	T	SNP	GOLGA8I	ENST00000450802	human	ensembl	74_37	+1	known	missense	c.537	p.E179D	0.696	NULL	NULL	-	no_errors	GOLGA8I	HGNC	ENSG00000153666	tier1	-	-	111	0	0.00	137	37	21.26	0	0	0.00	0	0	0.00
RGPD3	0	genome.wustl.edu	37	2	107069174	107069174	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6Z0-01A-13D-A36J-09	TCGA-DX-A6Z0-10B-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a2fa11-0adf-4577-9f91-f6b4f9f2e6b8	784eea3d-4146-483c-baf7-ceb206185ee1	2	107069174	107069174	G	A	SNP	RGPD3	ENST00000304514	human	ensembl	74_37	-1	known	missense	c.614	p.S205L	0.946	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD3	HGNC	ENSG00000153165	tier1	-	-	27	0	0.00	45	13	22.41	0	0	0.00	0	0	0.00
