Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
TTC39B	0	genome.wustl.edu	37	9	15211327	15211327	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	9	15211327	15211327	A	T	SNP	TTC39B	ENST00000512701	human	ensembl	74_37	-1	known	missense	c.551	p.F184Y	1.000	pfam_OMP_IML2_mit/TPR_39	pfam_OMP_IML2_mit/TPR_39,smart_TPR_repeat	-	no_errors	TTC39B	HGNC	ENSG00000155158	tier1	-	-	46	0	0.00	29	17	36.96	76	0	0.00	31	13	29.55
EIF2AK3	0	genome.wustl.edu	37	2	88885426	88885426	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	2	88885426	88885426	G	A	SNP	EIF2AK3	ENST00000303236	human	ensembl	74_37	-1	known	missense	c.1583	p.T528M	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like_supfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	EIF2AK3	HGNC	ENSG00000172071	tier1	rs200171164	-	115	0	0.00	55	25	30.86	139	0	0.00	71	33	31.43
TMEM211	0	genome.wustl.edu	37	22	25331358	25331358	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	22	25331358	25331358	G	T	SNP	TMEM211	ENST00000423535	human	ensembl	74_37	-1	known	missense	c.545	p.T182N	0.024	NULL	pfam_Lipome_HGMIC_fus_partner-like	-	no_errors	TMEM211	HGNC	ENSG00000206069	tier1	-	-	34	0	0.00	10	6	37.50	43	0	0.00	13	11	45.83
BET1	0	genome.wustl.edu	37	7	93605345	93605345	+	Silent	SNP	A	A	T			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	7	93605345	93605345	A	T	SNP	BET1	ENST00000357520	human	ensembl	74_37	-1	known	silent	c.303	p.V101	0.007	NULL	pfam_T_SRE_dom,pfscan_T_SRE_dom	-	no_errors	BET1	HGNC	ENSG00000105829	tier1	-	-	61	0	0.00	38	15	28.30	86	0	0.00	40	12	23.08
HOOK1	0	genome.wustl.edu	37	1	60314110	60314110	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	1	60314110	60314110	G	C	SNP	HOOK1	ENST00000371208	human	ensembl	74_37	+1	known	missense	c.1053	p.M351I	1.000	pfam_Hook-related_fam	pfam_Hook-related_fam,superfamily_Prefoldin	-	no_errors	HOOK1	HGNC	ENSG00000134709	tier1	-	-	55	0	0.00	28	9	24.32	93	0	0.00	89	18	16.82
NXPH3	0	genome.wustl.edu	37	17	47656469	47656469	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	17	47656469	47656469	C	A	SNP	NXPH3	ENST00000328741	human	ensembl	74_37	+1	known	nonsense	c.566	p.S189*	0.997	pfam_NXPH/NXPE,pirsf_Neurexophilin	pfam_NXPH/NXPE,pirsf_Neurexophilin	-	no_errors	NXPH3	HGNC	ENSG00000182575	tier1	-	-	34	0	0.00	22	4	15.38	34	0	0.00	31	11	26.19
CCT5	0	genome.wustl.edu	37	5	10261729	10261729	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	5	10261729	10261729	G	A	SNP	CCT5	ENST00000280326	human	ensembl	74_37	+1	known	missense	c.1051	p.E351K	0.999	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,tigrfam_Chap_CCT_epsi	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_epsi	-	no_errors	CCT5	HGNC	ENSG00000150753	tier1	rs140095139	-	56	0	0.00	60	14	18.92	55	0	0.00	47	6	11.32
EPN3	0	genome.wustl.edu	37	17	48617655	48617655	+	Silent	SNP	G	G	A			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	17	48617655	48617655	G	A	SNP	EPN3	ENST00000537145	human	ensembl	74_37	+1	known	silent	c.1023	p.P341	0.952	NULL	pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N,pfscan_Ubiquitin-int_motif	-	no_errors	EPN3	HGNC	ENSG00000049283	tier1	-	-	44	0	0.00	18	6	25.00	50	0	0.00	72	19	20.65
NLGN1	0	genome.wustl.edu	37	3	173997210	173997210	+	Silent	SNP	G	G	A			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	3	173997210	173997210	G	A	SNP	NLGN1	ENST00000401917	human	ensembl	74_37	+1	known	silent	c.1539	p.A513	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN1	HGNC	ENSG00000169760	tier1	rs200258151	GMAF=0.0005	44	0	0.00	27	11	28.21	97	0	0.00	95	27	22.13
RRM2	0	genome.wustl.edu	37	2	10269400	10269400	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	2	10269400	10269400	A	G	SNP	RRM2	ENST00000360566	human	ensembl	74_37	+1	known	missense	c.1237	p.I413V	1.000	superfamily_Ferritin-like_SF	pfam_RNR_small,superfamily_Ferritin-like_SF	-	no_errors	RRM2	HGNC	ENSG00000171848	tier1	-	-	63	0	0.00	31	28	47.46	67	0	0.00	42	46	52.27
TSC1	0	genome.wustl.edu	37	9	135772703	135772703	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	9	135772703	135772703	T	C	SNP	TSC1	ENST00000298552	human	ensembl	74_37	-1	known	missense	c.2843	p.Y948C	1.000	NULL	pfam_Hamartin,superfamily_ARM-type_fold	-	no_errors	TSC1	HGNC	ENSG00000165699	tier1	-	-	69	0	0.00	14	29	67.44	71	0	0.00	25	29	53.70
ZNF790	0	genome.wustl.edu	37	19	37314268	37314268	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	19	37314268	37314268	G	C	SNP	ZNF790	ENST00000356725	human	ensembl	74_37	-1	known	missense	c.148	p.Q50E	0.277	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF790	HGNC	ENSG00000197863	tier1	-	-	44	0	0.00	12	16	57.14	95	0	0.00	43	37	46.25
ACSL3	0	genome.wustl.edu	37	2	223806326	223806326	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	2	223806326	223806326	A	G	SNP	ACSL3	ENST00000357430	human	ensembl	74_37	+1	known	missense	c.2117	p.K706R	1.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL3	HGNC	ENSG00000123983	tier1	-	-	46	0	0.00	22	10	31.25	97	0	0.00	43	40	48.19
SLC4A10	0	genome.wustl.edu	37	2	162719573	162719573	+	Splice_Site	SNP	G	G	T			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	2	162719573	162719573	G	T	SNP	SLC4A10	ENST00000446997	human	ensembl	74_37	+1	known	splice_site	c.766+1	e6+1	1.000	-	-	-	no_errors	SLC4A10	HGNC	ENSG00000144290	tier1	-	-	61	0	0.00	20	19	48.72	153	0	0.00	65	43	39.81
LGALS3BP	0	genome.wustl.edu	37	17	76967850	76967850	+	Silent	SNP	G	G	A			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	17	76967850	76967850	G	A	SNP	LGALS3BP	ENST00000262776	human	ensembl	74_37	-1	known	silent	c.1566	p.A522	0.981	NULL	pfam_SRCR,pfam_BACK,superfamily_Srcr_rcpt-rel,superfamily_BTB/POZ_fold,smart_Srcr_rcpt-rel,smart_BACK,pfscan_BTB/POZ-like,pfscan_SRCR,prints_SRCR	-	no_errors	LGALS3BP	HGNC	ENSG00000108679	tier1	-	-	59	0	0.00	34	12	26.09	10	0	0.00	22	3	12.00
ENSG00000228436	0	genome.wustl.edu	37	1	39341869	39341869	+	R	SNP	T	T	A			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	1	39341869	39341869	T	A	SNP	ENSG00000228436	ENST00000443161	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.058	-	-	-	no_errors	RP5-864K19.4	Clone_based_vega_gene	ENSG00000228436	tier1	-	-	60	0	0.00	27	16	37.21	94	0	0.00	43	26	37.68
ABCA4	0	genome.wustl.edu	37	1	94463415	94463415	+	Splice_Site	SNP	G	G	T			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	1	94463415	94463415	G	T	SNP	ABCA4	ENST00000370225	human	ensembl	74_37	-1	known	splice_site	c.6729+2	e48+2	1.000	-	-	-	no_errors	ABCA4	HGNC	ENSG00000198691	tier1	-	-	40	0	0.00	14	5	26.32	49	0	0.00	33	18	35.29
ABCG5	0	genome.wustl.edu	37	2	44041643	44041643	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	2	44041643	44041643	C	T	SNP	ABCG5	ENST00000260645	human	ensembl	74_37	-1	known	missense	c.1735	p.E579K	1.000	pfam_ABC_2_trans	pfam_ABC_2_trans,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCG5	HGNC	ENSG00000138075	tier1	-	-	149	0	0.00	130	41	23.98	146	0	0.00	160	44	21.57
BET1	0	genome.wustl.edu	37	7	93605346	93605346	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	7	93605346	93605346	A	T	SNP	BET1	ENST00000357520	human	ensembl	74_37	-1	known	missense	c.302	p.V101D	0.005	NULL	pfam_T_SRE_dom,pfscan_T_SRE_dom	-	no_errors	BET1	HGNC	ENSG00000105829	tier1	-	-	62	0	0.00	39	14	26.42	84	0	0.00	40	12	23.08
PTX4	0	genome.wustl.edu	37	16	1536545	1536545	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	16	1536545	1536545	C	T	SNP	PTX4	ENST00000447419	human	ensembl	74_37	-1	known	missense	c.832	p.A278T	0.013	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin	pfam_Pentaxin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	-	no_errors	PTX4	HGNC	ENSG00000251692	tier1	rs148493506	-	12	0	0.00	3	6	66.67	68	0	0.00	86	28	24.35
SEL1L2	0	genome.wustl.edu	37	20	13936777	13936777	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	20	13936777	13936777	G	A	SNP	SEL1L2	ENST00000284951	human	ensembl	74_37	-1	known	missense	c.59	p.T20I	0.440	NULL	pfam_Sel1-like,smart_Sel1-like	-	no_errors	SEL1L2	HGNC	ENSG00000101251	tier1	-	-	129	0	0.00	63	26	29.21	87	0	0.00	41	20	32.79
AHK	0	genome.wustl.edu	37	11	62288755	62288755	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	11	62288755	62288755	C	T	SNP	AHK	ENST00000378024	human	ensembl	74_37	-1	known	missense	c.13134	p.M4378I	1.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHK	HGNC	ENSG00000124942	tier1	-	-	106	0	0.00	49	21	30.00	107	0	0.00	63	22	25.88
BET1	0	genome.wustl.edu	37	7	93605343	93605343	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	7	93605343	93605343	G	A	SNP	BET1	ENST00000357520	human	ensembl	74_37	-1	known	missense	c.305	p.P102L	0.017	NULL	pfam_T_SRE_dom,pfscan_T_SRE_dom	-	no_errors	BET1	HGNC	ENSG00000105829	tier1	-	-	62	0	0.00	39	16	29.09	87	0	0.00	40	14	25.93
OR5H14	0	genome.wustl.edu	37	3	97868430	97868430	+	Silent	SNP	T	T	A			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	3	97868430	97868430	T	A	SNP	OR5H14	ENST00000437310	human	ensembl	74_37	+1	known	silent	c.201	p.A67	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5H14	HGNC	ENSG00000236032	tier1	-	-	95	0	0.00	26	20	43.48	69	0	0.00	20	17	45.95
TRPC5	0	genome.wustl.edu	37	X	111090651	111090651	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	X	111090651	111090651	C	T	SNP	TRPC5	ENST00000262839	human	ensembl	74_37	-1	known	missense	c.1391	p.R464H	1.000	pfam_Ion_trans_dom,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC5_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC5	HGNC	ENSG00000072315	tier1	-	-	38	0	0.00	18	13	41.94	93	0	0.00	81	37	31.09
SDK2	0	genome.wustl.edu	37	17	71382003	71382003	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	17	71382003	71382003	C	A	SNP	SDK2	ENST00000392650	human	ensembl	74_37	-1	known	missense	c.4552	p.V1518L	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK2	HGNC	ENSG00000069188	tier1	-	-	26	0	0.00	24	15	38.46	46	0	0.00	43	30	41.10
DAPP1	0	genome.wustl.edu	37	4	100756843	100756843	+	Silent	SNP	C	C	T			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	4	100756843	100756843	C	T	SNP	DAPP1	ENST00000512369	human	ensembl	74_37	+1	known	silent	c.165	p.D55	0.976	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	pfam_SH2,pfam_Pleckstrin_homology,smart_SH2,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH2,prints_SH2	-	no_errors	DAPP1	HGNC	ENSG00000070190	tier1	-	-	41	0	0.00	12	10	45.45	59	0	0.00	32	31	49.21
MAP2K4	0	genome.wustl.edu	37	17	12013743	12013743	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	17	12013743	12013743	G	A	SNP	MAP2K4	ENST00000415385	human	ensembl	74_37	+1	known	missense	c.718	p.D240N	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP2K4	HGNC	ENSG00000065559	tier1	-	-	148	0	0.00	40	19	32.20	152	0	0.00	55	44	44.44
MYBPC1	0	genome.wustl.edu	37	12	102008351	102008351	+	R	SNP	A	A	G			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	12	102008351	102008351	A	G	SNP	MYBPC1	ENST00000550501	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	MYBPC1	HGNC	ENSG00000196091	tier1	-	-	62	0	0.00	32	6	15.79	145	0	0.00	63	45	41.67
ENSG00000260628	0	genome.wustl.edu	37	16	31993452	31993452	+	R	SNP	G	G	T			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	16	31993452	31993452	G	T	SNP	ENSG00000260628	ENST00000568570	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-1166P10.1	Clone_based_vega_gene	ENSG00000260628	tier1	-	-	66	0	0.00	33	9	20.93	15	0	0.00	19	6	24.00
AEBP2	0	genome.wustl.edu	37	12	19667686	19667686	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	12	19667686	19667686	T	A	SNP	AEBP2	ENST00000398864	human	ensembl	74_37	+1	known	missense	c.1449	p.D483E	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	AEBP2	HGNC	ENSG00000139154	tier1	-	-	72	0	0.00	13	15	53.57	135	0	0.00	70	43	38.05
TBC1D22B	0	genome.wustl.edu	37	6	37247153	37247153	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	6	37247153	37247153	G	T	SNP	TBC1D22B	ENST00000373491	human	ensembl	74_37	+1	known	missense	c.187	p.A63S	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D22B	HGNC	ENSG00000065491	tier1	-	-	62	0	0.00	39	11	22.00	118	0	0.00	85	33	27.97
SYPL2	0	genome.wustl.edu	37	1	110019410	110019410	+	Silent	SNP	C	C	T			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	1	110019410	110019410	C	T	SNP	SYPL2	ENST00000369872	human	ensembl	74_37	+1	known	silent	c.267	p.I89	0.927	pfam_Marvel	pfam_Marvel,prints_Synaptophysin/porin	-	no_errors	SYPL2	HGNC	ENSG00000143028	tier1	-	-	18	0	0.00	23	10	30.30	48	0	0.00	18	14	43.75
MYO3A	0	genome.wustl.edu	37	10	26463350	26463350	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	10	26463350	26463350	T	C	SNP	MYO3A	ENST00000265944	human	ensembl	74_37	+1	known	missense	c.4157	p.V1386A	0.063	NULL	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777	tier1	-	-	60	0	0.00	40	13	24.53	126	0	0.00	71	21	22.83
MET	0	genome.wustl.edu	37	7	116339237	116339237	+	Silent	SNP	C	C	T			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	7	116339237	116339237	C	T	SNP	MET	ENST00000318493	human	ensembl	74_37	+1	known	silent	c.99	p.S33	0.005	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfscan_Semap_dom	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semap_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semap_dom,pfscan_Prot_kinase_dom	-	no_errors	MET	HGNC	ENSG00000105976	tier1	-	-	70	0	0.00	33	38	53.52	120	0	0.00	63	101	61.59
BET1	0	genome.wustl.edu	37	7	93605300	93605300	+	Silent	SNP	G	G	A			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	7	93605300	93605300	G	A	SNP	BET1	ENST00000357520	human	ensembl	74_37	-1	known	silent	c.348	p.F116	0.136	NULL	pfam_T_SRE_dom,pfscan_T_SRE_dom	-	no_errors	BET1	HGNC	ENSG00000105829	tier1	-	-	59	0	0.00	34	31	47.69	82	0	0.00	33	18	35.29
IGFN1	0	genome.wustl.edu	37	1	201181230	201181230	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	1	201181230	201181230	G	T	SNP	IGFN1	ENST00000335211	human	ensembl	74_37	+1	known	missense	c.7209	p.K2403N	0.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGFN1	HGNC	ENSG00000163395	tier1	-	-	28	0	0.00	6	12	66.67	72	0	0.00	23	41	63.08
OPN1SW	0	genome.wustl.edu	37	7	128415802	128415802	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	7	128415802	128415802	T	G	SNP	OPN1SW	ENST00000249389	human	ensembl	74_37	-1	known	missense	c.43	p.I15L	0.972	prints_Opsin_blue	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Opsin_blue,prints_GPCR_Rhodpsn,prints_Opsin	-	no_errors	OPN1SW	HGNC	ENSG00000128617	tier1	rs200504235	GMAF=0.0005	59	0	0.00	80	28	25.93	97	0	0.00	141	65	31.55
NOMO2	0	genome.wustl.edu	37	16	18554998	18554998	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	16	18554998	18554998	C	G	SNP	NOMO2	ENST00000381474	human	ensembl	74_37	-1	known	missense	c.676	p.D226H	1.000	superfamily_CarboxyPept-like_regulatory	pfam_DUF2012,superfamily_Carb-bd-like_fold,superfamily_CarboxyPept-like_regulatory,superfamily_Collagen-bd_Cna_B-typ_dom	-	no_errors	NOMO2	HGNC	ENSG00000185164	tier1	-	-	156	0	0.00	133	18	11.92	50	0	0.00	55	8	12.70
GRAP2	0	genome.wustl.edu	37	22	40351885	40351885	+	Silent	SNP	C	C	T			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	22	40351885	40351885	C	T	SNP	GRAP2	ENST00000344138	human	ensembl	74_37	+1	known	silent	c.141	p.P47	1.000	pfam_SH3_domain,pfam_SH3_2,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH2,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,pfscan_SH2,pfscan_SH3_domain,prints_SH2,prints_SH3_domain	-	no_errors	GRAP2	HGNC	ENSG00000100351	tier1	-	-	62	0	0.00	18	40	68.97	111	0	0.00	53	49	48.04
PKD1L2	0	genome.wustl.edu	37	16	81208264	81208264	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	16	81208264	81208264	C	T	SNP	PKD1L2	ENST00000527937	human	ensembl	74_37	-1	known	missense	c.607	p.V203M	0.000	pfscan_REJ-like	superfamily_Coatomer/clathrin_app_Ig-like,pfscan_REJ-like	-	no_errors	PKD1L2	HGNC	ENSG00000166473	tier1	-	-	53	0	0.00	29	13	30.95	84	0	0.00	75	16	17.58
GPR158	0	genome.wustl.edu	37	10	25891039	25891039	+	R	DEL	A	A	-			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	10	25891039	25891039	A	-	DEL	GPR158	ENST00000490549	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	GPR158	HGNC	ENSG00000151025	tier1			49	0	0.00	21	12	36.36	149	0	0.00	66	37	35.92
ZNF335	0	genome.wustl.edu	37	20	44578874	44578876	+	In_Frame_Del	DEL	TGT	TGT	-			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	TGT	TGT	TGT	-	TGT	TGT	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	20	44578874	44578876	TGT	-	DEL	ZNF335	ENST00000322927	human	ensembl	74_37	-1	known	in_frame_del	c.3471_3469	p.T1157in_frame_del	0.141:0.993:0.993	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF335	HGNC	ENSG00000198026	tier1			35	0	0.00	30	5	14.29	59	0	0.00	75	16	17.58
SLC9A8	0	genome.wustl.edu	37	20	48467301	48467301	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	20	48467301	48467301	T	-	DEL	SLC9A8	ENST00000417961	human	ensembl	74_37	+1	known	frame_shift_del	c.537	p.F182fs	0.189	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A8	HGNC	ENSG00000197818	tier1			19	0	0.00	15	6	28.57	45	0	0.00	50	10	16.67
PTTG1IP	0	genome.wustl.edu	37	21	46276273	46276276	+	Frame_Shift_Del	DEL	AAGT	AAGT	-			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	AAGT	AAGT	AAGT	-	AAGT	AAGT	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	21	46276273	46276276	AAGT	-	DEL	PTTG1IP	ENST00000330938	human	ensembl	74_37	-1	known	frame_shift_del	c.284_281	p.N94fs	0.995:1.000:1.000:1.000	NULL	smart_Plexin-like_fold	-	no_errors	PTTG1IP	HGNC	ENSG00000183255	tier1			45	0	0.00	20	3	13.04	121	0	0.00	52	21	28.77
ADIRF-AS1	0	genome.wustl.edu	37	10	88728453	88728453	+	R	SNP	T	T	A			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	10	88728453	88728453	T	A	SNP	ADIRF-AS1	ENST00000609111	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ADIRF-AS1	HGNC	ENSG00000272734	tier1	-	-	13	0	0.00	1	7	87.50	19	0	0.00	5	3	33.33
ALMS1	0	genome.wustl.edu	37	2	73827825	73827825	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	2	73827825	73827825	G	A	SNP	ALMS1	ENST00000264448	human	ensembl	74_37	+1	known	missense	c.11686	p.G3896S	0.127	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	tier1	rs187887110	GMAF=0.0005	95	0	0.00	7	37	84.09	112	0	0.00	6	39	86.67
ENSG00000229743	0	genome.wustl.edu	37	2	105484676	105484676	+	R	SNP	C	C	G			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	2	105484676	105484676	C	G	SNP	ENSG00000229743	ENST00000433433	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	AC018730.3	Clone_based_vega_gene	ENSG00000229743	tier1	-	-	50	0	0.00	14	17	54.84	24	0	0.00	7	9	56.25
KNDC1	0	genome.wustl.edu	37	10	134980985	134980985	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	10	134980985	134980985	G	C	SNP	KNDC1	ENST00000368572	human	ensembl	74_37	+1	known	missense	c.203	p.S68T	1.000	smart_KIND	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_Kinase-like_dom,smart_KIND,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	KNDC1	HGNC	ENSG00000171798	tier1	-	-	56	0	0.00	21	15	41.67	9	0	0.00	5	3	37.50
PCDH20	0	genome.wustl.edu	37	13	61987993	61987994	+	Frame_Shift_Ins	INS	-	-	C			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	13	61987993	61987994	-	C	INS	PCDH20	ENST00000409186	human	ensembl	74_37	-1	known	frame_shift_ins	c.239_238	p.V80fs	1.000:0.994	pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH20	HGNC	ENSG00000197991	tier1			18	0	0.00	8	3	27.27	20	0	0.00	6	4	40.00
PCDH7	0	genome.wustl.edu	37	4	30723421	30723421	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	4	30723421	30723421	T	A	SNP	PCDH7	ENST00000543491	human	ensembl	74_37	+1	known	missense	c.377	p.L126Q	1.000	smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH7	HGNC	ENSG00000169851	tier1	-	-	61	0	0.00	5	10	66.67	60	0	0.00	5	21	80.77
TMEM132A	0	genome.wustl.edu	37	11	60704165	60704165	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	11	60704165	60704165	G	A	SNP	TMEM132A	ENST00000005286	human	ensembl	74_37	+1	known	missense	c.2861	p.R954Q	0.905	NULL	NULL	-	no_errors	TMEM132A	HGNC	ENSG00000006118	tier1	-	-	41	0	0.00	22	6	21.43	20	0	0.00	8	2	20.00
KIAA2022	0	genome.wustl.edu	37	X	73961334	73961334	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	X	73961334	73961334	C	A	SNP	KIAA2022	ENST00000055682	human	ensembl	74_37	-1	known	missense	c.3058	p.D1020Y	1.000	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030	tier1	-	-	37	0	0.00	14	3	17.65	127	0	0.00	83	9	9.78
TUBGCP5	0	genome.wustl.edu	37	15	22851033	22851033	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	15	22851033	22851033	G	T	SNP	TUBGCP5	ENST00000283645	human	ensembl	74_37	+1	known	missense	c.1295	p.R432L	1.000	pfam_TUBGCP	pfam_TUBGCP	-	no_errors	TUBGCP5	HGNC	ENSG00000153575	tier1	-	-	47	0	0.00	23	7	23.33	150	0	0.00	86	9	9.47
JUN	0	genome.wustl.edu	37	1	59248443	59248443	+	Silent	SNP	G	G	A			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	1	59248443	59248443	G	A	SNP	JUN	ENST00000371222	human	ensembl	74_37	-1	known	silent	c.300	p.P100	1.000	pfam_JNK	pfam_JNK,pfam_bZIP,superfamily_TF_D-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Jun	-	no_errors	JUN	HGNC	ENSG00000177606	tier1	-	-	43	0	0.00	119	14	10.53	34	0	0.00	144	11	7.10
COL19A1	0	genome.wustl.edu	37	6	70909399	70909399	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	6	70909399	70909399	A	C	SNP	COL19A1	ENST00000322773	human	ensembl	74_37	+1	known	missense	c.3182	p.K1061T	1.000	NULL	pfam_Collagen,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL19A1	HGNC	ENSG00000082293	tier1	-	-	86	0	0.00	48	5	9.43	90	0	0.00	79	6	7.06
SLC13A4	0	genome.wustl.edu	37	7	135366355	135366355	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	7	135366355	135366355	A	G	SNP	SLC13A4	ENST00000354042	human	ensembl	74_37	-1	known	missense	c.1837	p.Y613H	1.000	NULL	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom,pfam_DctM	-	no_errors	SLC13A4	HGNC	ENSG00000164707	tier1	-	-	66	0	0.00	146	18	10.98	130	0	0.00	485	24	4.71
ENSG00000228532	0	genome.wustl.edu	37	X	114953402	114953402	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	X	114953402	114953402	G	A	SNP	ENSG00000228532	ENST00000449327	human	ensembl	74_37	-1	novel	nonsense	c.148	p.R50*	0.673	pfam_Rad60/SUMO_like,pfam_Ubiquitin_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	pfam_Rad60/SUMO_like,pfam_Ubiquitin_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	RP1-241P17.4	Clone_based_vega_gene	ENSG00000228532	tier1	-	-	96	0	0.00	27	25	48.08	0	0	0.00	0	0	0.00
MUC4	0	genome.wustl.edu	37	3	195506473	195506473	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	3	195506473	195506473	A	G	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	missense	c.11978	p.V3993A	0.000	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	tier1	rs201922637	-	14	0	0.00	5	4	44.44	0	0	0.00	0	0	0.00
PRAMEF11	0	genome.wustl.edu	37	1	12887523	12887523	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	1	12887523	12887523	C	T	SNP	PRAMEF11	ENST00000535591	human	ensembl	74_37	-1	known	missense	c.334	p.E112K	0.020	NULL	NULL	-	no_errors	PRAMEF11	HGNC	ENSG00000204513	tier1	-	-	240	0	0.00	83	71	46.10	0	0	0.00	0	0	0.00
SSTR3	0	genome.wustl.edu	37	22	37603369	37603369	+	Silent	SNP	C	C	T			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	22	37603369	37603369	C	T	SNP	SSTR3	ENST00000328544	human	ensembl	74_37	-1	known	silent	c.474	p.P158	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Somatstn_rcpt_3,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Somatstn_rcpt_5,prints_Neuropept_B/W_rcpt	-	no_errors	SSTR3	HGNC	ENSG00000183473	tier1	-	-	18	0	0.00	7	12	63.16	2	0	0.00	0	0	0.00
ENSG00000260973	0	genome.wustl.edu	37	16	22623130	22623130	+	R	SNP	G	G	A			TCGA-DX-A7EF-01A-11D-A33E-09	TCGA-DX-A7EF-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a1c5c19d-3879-4216-ab2b-b4ab3be9ca98	c66e0b91-0c95-4208-90c7-39a8f030fff1	16	22623130	22623130	G	A	SNP	ENSG00000260973	ENST00000567401	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.395	-	-	-	no_errors	RP11-105C19.2	Clone_based_vega_gene	ENSG00000260973	tier1	-	-	49	0	0.00	34	7	17.07	37	0	0.00	30	2	6.25
