Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
TUBA4B	0	genome.wustl.edu	37	2	220136303	220136303	+	R	SNP	C	C	T			TCGA-DX-A7ER-01A-11D-A36J-09	TCGA-DX-A7ER-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3fe739b3-f74d-4241-ad59-41d70c6e190f	e9334f05-85a9-45d3-b341-aacb77034f08	2	220136303	220136303	C	T	SNP	TUBA4B	ENST00000473885	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TUBA4B	HGNC	ENSG00000243910	tier1	-	-	114	1	0.87	56	47	45.63	56	0	0.00	29	26	47.27
TCHH	0	genome.wustl.edu	37	1	152085283	152085283	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7ER-01A-11D-A36J-09	TCGA-DX-A7ER-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3fe739b3-f74d-4241-ad59-41d70c6e190f	e9334f05-85a9-45d3-b341-aacb77034f08	1	152085283	152085283	C	T	SNP	TCHH	ENST00000368804	human	ensembl	74_37	-1	known	missense	c.410	p.R137H	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	TCHH	HGNC	ENSG00000159450	tier1	-	-	51	0	0.00	15	18	54.55	79	0	0.00	30	38	55.88
DERA	0	genome.wustl.edu	37	12	16189290	16189290	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7ER-01A-11D-A36J-09	TCGA-DX-A7ER-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3fe739b3-f74d-4241-ad59-41d70c6e190f	e9334f05-85a9-45d3-b341-aacb77034f08	12	16189290	16189290	C	T	SNP	DERA	ENST00000428559	human	ensembl	74_37	+1	known	missense	c.875	p.T292I	0.979	pfam_DeoC/FbaB/lacD_aldolase,pirsf_DeoC	pfam_DeoC/FbaB/lacD_aldolase,pirsf_DeoC,tigrfam_DeoC	-	no_errors	DERA	HGNC	ENSG00000023697	tier1	-	-	45	0	0.00	18	23	56.10	83	0	0.00	34	25	42.37
LYRM2	0	genome.wustl.edu	37	6	90347454	90347454	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A7ER-01A-11D-A36J-09	TCGA-DX-A7ER-10A-01D-A36M-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3fe739b3-f74d-4241-ad59-41d70c6e190f	e9334f05-85a9-45d3-b341-aacb77034f08	6	90347454	90347454	T	A	SNP	LYRM2	ENST00000520441	human	ensembl	74_37	-1	putative	missense	c.193	p.T65S	0.192	NULL	pfam_Complex1_LYR	-	no_errors	LYRM2	HGNC	ENSG00000083099	tier1	-	-	75	0	0.00	24	35	59.32	133	0	0.00	43	26	37.14
SNX33	0	genome.wustl.edu	37	15	75942421	75942421	+	Nonsense_Mutation	SNP	C	C	G			TCGA-DX-A7ER-01A-11D-A36J-09	TCGA-DX-A7ER-10A-01D-A36M-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3fe739b3-f74d-4241-ad59-41d70c6e190f	e9334f05-85a9-45d3-b341-aacb77034f08	15	75942421	75942421	C	G	SNP	SNX33	ENST00000308527	human	ensembl	74_37	+1	known	nonsense	c.978	p.Y326*	0.267	pfam_Phox,superfamily_Phox,smart_Phox,pirsf_Snx9,pfscan_Phox	pfam_Sorting_nexin_WASP-bd-dom,pfam_Phox,pfam_SH3_domain,pfam_SH3_2,superfamily_Phox,superfamily_SH3_domain,smart_SH3_domain,smart_Phox,pirsf_Snx9,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SNX33	HGNC	ENSG00000173548	tier1	-	-	68	0	0.00	19	17	45.95	57	0	0.00	20	16	44.44
GPM6A	0	genome.wustl.edu	37	4	176556169	176556169	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A7ER-01A-11D-A36J-09	TCGA-DX-A7ER-10A-01D-A36M-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3fe739b3-f74d-4241-ad59-41d70c6e190f	e9334f05-85a9-45d3-b341-aacb77034f08	4	176556169	176556169	C	A	SNP	GPM6A	ENST00000280187	human	ensembl	74_37	-1	known	missense	c.724	p.V242L	1.000	pfam_Myelin_PLP	pfam_Myelin_PLP,smart_Myelin_PLP,prints_Myelin_PLP	-	no_errors	GPM6A	HGNC	ENSG00000150625	tier1	rs1049820	-	20	0	0.00	3	9	75.00	52	0	0.00	50	31	38.27
TMEM74	0	genome.wustl.edu	37	8	109797134	109797134	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7ER-01A-11D-A36J-09	TCGA-DX-A7ER-10A-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3fe739b3-f74d-4241-ad59-41d70c6e190f	e9334f05-85a9-45d3-b341-aacb77034f08	8	109797134	109797134	G	A	SNP	TMEM74	ENST00000297459	human	ensembl	74_37	-1	known	missense	c.194	p.A65V	0.000	NULL	NULL	-	no_errors	TMEM74	HGNC	ENSG00000164841	tier1	-	-	72	0	0.00	44	34	43.59	113	0	0.00	45	36	44.44
ACOX2	0	genome.wustl.edu	37	3	58514611	58514611	+	Nonsense_Mutation	SNP	A	A	C			TCGA-DX-A7ER-01A-11D-A36J-09	TCGA-DX-A7ER-10A-01D-A36M-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3fe739b3-f74d-4241-ad59-41d70c6e190f	e9334f05-85a9-45d3-b341-aacb77034f08	3	58514611	58514611	A	C	SNP	ACOX2	ENST00000302819	human	ensembl	74_37	-1	known	nonsense	c.1065	p.Y355*	0.874	superfamily_AcylCo_DH/oxidase_C,pirsf_Acyl-CoA_oxidase	pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCo_DH/oxidase_C,superfamily_AcylCoA_DH/oxidase_NM_dom,pirsf_Acyl-CoA_oxidase	-	no_errors	ACOX2	HGNC	ENSG00000168306	tier1	-	-	97	0	0.00	29	33	53.23	134	0	0.00	56	45	44.12
PDE4DIP	0	genome.wustl.edu	37	1	144868067	144868067	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A7ER-01A-11D-A36J-09	TCGA-DX-A7ER-10A-01D-A36M-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3fe739b3-f74d-4241-ad59-41d70c6e190f	e9334f05-85a9-45d3-b341-aacb77034f08	1	144868067	144868067	C	G	SNP	PDE4DIP	ENST00000369356	human	ensembl	74_37	-1	known	missense	c.5372	p.R1791T	0.013	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	tier1	-	-	153	0	0.00	118	27	18.62	108	1	0.90	76	27	26.21
SNORD32B	0	genome.wustl.edu	37	6	29550086	29550086	+	R	SNP	C	C	G			TCGA-DX-A7ER-01A-11D-A36J-09	TCGA-DX-A7ER-10A-01D-A36M-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3fe739b3-f74d-4241-ad59-41d70c6e190f	e9334f05-85a9-45d3-b341-aacb77034f08	6	29550086	29550086	C	G	SNP	SNORD32B	ENST00000364460	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	SNORD32B	HGNC	ENSG00000201330	tier1	-	-	196	0	0.00	72	56	43.75	56	0	0.00	36	22	37.93
OR10C1	0	genome.wustl.edu	37	6	29408456	29408456	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A7ER-01A-11D-A36J-09	TCGA-DX-A7ER-10A-01D-A36M-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3fe739b3-f74d-4241-ad59-41d70c6e190f	e9334f05-85a9-45d3-b341-aacb77034f08	6	29408456	29408456	G	T	SNP	OR10C1	ENST00000444197	human	ensembl	74_37	+1	known	missense	c.664	p.V222F	0.005	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR10C1	HGNC	ENSG00000206474	tier1	-	-	61	0	0.00	18	22	55.00	73	0	0.00	50	32	39.02
KIAA0195	0	genome.wustl.edu	37	17	73484164	73484164	+	Silent	SNP	C	C	T			TCGA-DX-A7ER-01A-11D-A36J-09	TCGA-DX-A7ER-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3fe739b3-f74d-4241-ad59-41d70c6e190f	e9334f05-85a9-45d3-b341-aacb77034f08	17	73484164	73484164	C	T	SNP	KIAA0195	ENST00000314256	human	ensembl	74_37	+1	known	silent	c.561	p.I187	1.000	NULL	pfam_ATPase_P-typ_cation-transptr_C	-	no_errors	KIAA0195	HGNC	ENSG00000177728	tier1	-	-	84	0	0.00	45	37	45.12	80	0	0.00	39	34	45.95
RXFP2	0	genome.wustl.edu	37	13	32356836	32356836	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A7ER-01A-11D-A36J-09	TCGA-DX-A7ER-10A-01D-A36M-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3fe739b3-f74d-4241-ad59-41d70c6e190f	e9334f05-85a9-45d3-b341-aacb77034f08	13	32356836	32356836	G	T	SNP	RXFP2	ENST00000298386	human	ensembl	74_37	+1	known	missense	c.881	p.G294V	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_GPCR_Rhodpsn,pfam_Leu-rich_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Leu-rich_rpt_typical-subtyp,pfscan_LDrepeatLR_classA_rpt,pfscan_GPCR_Rhodpsn_7TM,prints_Relaxin_rcpt,prints_GPCR_Rhodpsn,prints_Gphrmn_rcpt_fam	-	no_errors	RXFP2	HGNC	ENSG00000133105	tier1	-	-	75	0	0.00	38	26	40.62	75	0	0.00	48	45	48.39
LAMB1	0	genome.wustl.edu	37	7	107601660	107601660	+	Silent	SNP	C	C	T			TCGA-DX-A7ER-01A-11D-A36J-09	TCGA-DX-A7ER-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3fe739b3-f74d-4241-ad59-41d70c6e190f	e9334f05-85a9-45d3-b341-aacb77034f08	7	107601660	107601660	C	T	SNP	LAMB1	ENST00000222399	human	ensembl	74_37	-1	known	silent	c.2100	p.L700	0.963	pfscan_Laminin_IV	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Prefoldin,superfamily_t-SRE,superfamily_P-loop_NTPase,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB1	HGNC	ENSG00000091136	tier1	-	-	81	0	0.00	35	19	35.19	51	0	0.00	41	17	29.31
SLC26A6	0	genome.wustl.edu	37	3	48667882	48667882	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A7ER-01A-11D-A36J-09	TCGA-DX-A7ER-10A-01D-A36M-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3fe739b3-f74d-4241-ad59-41d70c6e190f	e9334f05-85a9-45d3-b341-aacb77034f08	3	48667882	48667882	C	A	SNP	SLC26A6	ENST00000395550	human	ensembl	74_37	-1	known	missense	c.1315	p.D439Y	0.079	pfam_Sulph_transpt,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A6	HGNC	ENSG00000225697	tier1	-	-	92	0	0.00	35	29	45.31	106	0	0.00	45	41	47.67
PRR14L	0	genome.wustl.edu	37	22	32108558	32108558	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7ER-01A-11D-A36J-09	TCGA-DX-A7ER-10A-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3fe739b3-f74d-4241-ad59-41d70c6e190f	e9334f05-85a9-45d3-b341-aacb77034f08	22	32108558	32108558	G	A	SNP	PRR14L	ENST00000397493	human	ensembl	74_37	-1	known	missense	c.5267	p.P1756L	0.001	NULL	NULL	-	no_errors	PRR14L	HGNC	ENSG00000183530	tier1	-	-	32	0	0.00	13	14	51.85	48	0	0.00	40	18	31.03
NPAS4	0	genome.wustl.edu	37	11	66192048	66192048	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7ER-01A-11D-A36J-09	TCGA-DX-A7ER-10A-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3fe739b3-f74d-4241-ad59-41d70c6e190f	e9334f05-85a9-45d3-b341-aacb77034f08	11	66192048	66192048	G	A	SNP	NPAS4	ENST00000311034	human	ensembl	74_37	+1	known	missense	c.1687	p.A563T	0.933	NULL	pfam_PAS_fold_3,superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	NPAS4	HGNC	ENSG00000174576	tier1	-	-	39	0	0.00	18	18	50.00	164	0	0.00	83	51	38.06
CAC1A	0	genome.wustl.edu	37	19	13410084	13410084	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A7ER-01A-11D-A36J-09	TCGA-DX-A7ER-10A-01D-A36M-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3fe739b3-f74d-4241-ad59-41d70c6e190f	e9334f05-85a9-45d3-b341-aacb77034f08	19	13410084	13410084	G	C	SNP	CAC1A	ENST00000360228	human	ensembl	74_37	-1	known	missense	c.2363	p.A788G	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CAC1A	HGNC	ENSG00000141837	tier1	-	-	73	0	0.00	33	30	47.62	35	0	0.00	18	12	40.00
TMEM14B	0	genome.wustl.edu	37	6	10750123	10750123	+	R	SNP	G	G	T			TCGA-DX-A7ER-01A-11D-A36J-09	TCGA-DX-A7ER-10A-01D-A36M-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3fe739b3-f74d-4241-ad59-41d70c6e190f	e9334f05-85a9-45d3-b341-aacb77034f08	6	10750123	10750123	G	T	SNP	TMEM14B	ENST00000492297	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	TMEM14B	HGNC	ENSG00000137210	tier1	-	-	11	0	0.00	2	8	80.00	74	0	0.00	28	22	44.00
ROBO2	0	genome.wustl.edu	37	3	77614263	77614263	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7ER-01A-11D-A36J-09	TCGA-DX-A7ER-10A-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3fe739b3-f74d-4241-ad59-41d70c6e190f	e9334f05-85a9-45d3-b341-aacb77034f08	3	77614263	77614263	G	A	SNP	ROBO2	ENST00000461745	human	ensembl	74_37	+1	known	missense	c.1841	p.R614H	1.000	superfamily_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO2	HGNC	ENSG00000185008	tier1	-	-	97	0	0.00	32	45	58.44	119	0	0.00	63	29	31.52
COLGALT1	0	genome.wustl.edu	37	19	17679325	17679325	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A7ER-01A-11D-A36J-09	TCGA-DX-A7ER-10A-01D-A36M-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3fe739b3-f74d-4241-ad59-41d70c6e190f	e9334f05-85a9-45d3-b341-aacb77034f08	19	17679325	17679325	A	G	SNP	COLGALT1	ENST00000252599	human	ensembl	74_37	+1	known	missense	c.632	p.Y211C	1.000	NULL	pfam_Glyco_trans_25	-	no_errors	COLGALT1	HGNC	ENSG00000130309	tier1	-	-	44	0	0.00	22	22	50.00	93	0	0.00	44	26	37.14
PANK4	0	genome.wustl.edu	37	1	2453358	2453358	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DX-A7ER-01A-11D-A36J-09	TCGA-DX-A7ER-10A-01D-A36M-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3fe739b3-f74d-4241-ad59-41d70c6e190f	e9334f05-85a9-45d3-b341-aacb77034f08	1	2453358	2453358	G	-	DEL	PANK4	ENST00000502770	human	ensembl	74_37	-1	known	frame_shift_del	c.147	p.K50fs	0.000	NULL	NULL	-	no_errors	PANK4	HGNC	ENSG00000157881	tier1			52	0	0.00	16	12	42.86	130	0	0.00	53	58	52.25
PCDH11Y	0	genome.wustl.edu	37	Y	4925493	4925493	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A7ER-01A-11D-A36J-09	TCGA-DX-A7ER-10A-01D-A36M-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3fe739b3-f74d-4241-ad59-41d70c6e190f	e9334f05-85a9-45d3-b341-aacb77034f08	Y	4925493	4925493	T	A	SNP	PCDH11Y	ENST00000215473	human	ensembl	74_37	+1	known	missense	c.629	p.L210Q	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11Y	HGNC	ENSG00000099715	tier1	-	-	107	0	0.00	1	98	98.99	51	0	0.00	5	62	91.18
TRPC7	0	genome.wustl.edu	37	5	135692561	135692561	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7ER-01A-11D-A36J-09	TCGA-DX-A7ER-10A-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3fe739b3-f74d-4241-ad59-41d70c6e190f	e9334f05-85a9-45d3-b341-aacb77034f08	5	135692561	135692561	G	A	SNP	TRPC7	ENST00000513104	human	ensembl	74_37	-1	known	missense	c.515	p.A172V	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC7_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC7	HGNC	ENSG00000069018	tier1	-	-	27	0	0.00	13	9	40.91	23	1	4.17	12	10	45.45
OBSCN	0	genome.wustl.edu	37	1	228494137	228494137	+	Silent	SNP	C	C	A			TCGA-DX-A7ER-01A-11D-A36J-09	TCGA-DX-A7ER-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3fe739b3-f74d-4241-ad59-41d70c6e190f	e9334f05-85a9-45d3-b341-aacb77034f08	1	228494137	228494137	C	A	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	silent	c.11724	p.T3908	0.006	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	tier1	-	-	24	0	0.00	6	8	57.14	7	0	0.00	3	1	25.00
KCNB1	0	genome.wustl.edu	37	20	48098845	48098845	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A7ER-01A-11D-A36J-09	TCGA-DX-A7ER-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3fe739b3-f74d-4241-ad59-41d70c6e190f	e9334f05-85a9-45d3-b341-aacb77034f08	20	48098845	48098845	C	A	SNP	KCNB1	ENST00000371741	human	ensembl	74_37	-1	known	missense	c.173	p.G58V	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl_volt-dep_Kv9	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.1,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB1	HGNC	ENSG00000158445	tier1	-	-	31	0	0.00	17	4	19.05	4	0	0.00	9	0	0.00
LOR	0	genome.wustl.edu	37	1	153233991	153233992	+	In_Frame_Ins	INS	-	-	CTCTGGCGGCGG			TCGA-DX-A7ER-01A-11D-A36J-09	TCGA-DX-A7ER-10A-01D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3fe739b3-f74d-4241-ad59-41d70c6e190f	e9334f05-85a9-45d3-b341-aacb77034f08	1	153233991	153233992	-	CTCTGGCGGCGG	INS	LOR	ENST00000368742	human	ensembl	74_37	+1	known	in_frame_ins	c.566_567	p.193in_frame_insGSGG	0.014:0.200	NULL	NULL	-	no_errors	LOR	HGNC	ENSG00000203782	tier1			1	0	0.00	0	0	0.00	1	0	0.00	0	0	0.00
RALGAPA1	0	genome.wustl.edu	37	14	36277946	36277946	+	Silent	SNP	G	G	T			TCGA-DX-A7ER-01A-11D-A36J-09	TCGA-DX-A7ER-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3fe739b3-f74d-4241-ad59-41d70c6e190f	e9334f05-85a9-45d3-b341-aacb77034f08	14	36277946	36277946	G	T	SNP	RALGAPA1	ENST00000258840	human	ensembl	74_37	-1	known	silent	c.96	p.R32	1.000	NULL	pfam_Rap_GAP_dom,superfamily_ARM-type_fold,pfscan_Rap_GAP_dom	-	no_errors	RALGAPA1	HGNC	ENSG00000174373	tier1	-	-	55	0	0.00	37	4	9.76	0	0	0.00	0	0	0.00
MED21	0	genome.wustl.edu	37	12	27179393	27179418	+	Frame_Shift_Del	DEL	AATGTGGTCCTCCTGCCTCTTTCAAT	AATGTGGTCCTCCTGCCTCTTTCAAT	-			TCGA-DX-A7ER-01A-11D-A36J-09	TCGA-DX-A7ER-10A-01D-A36M-09	AATGTGGTCCTCCTGCCTCTTTCAAT	AATGTGGTCCTCCTGCCTCTTTCAAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3fe739b3-f74d-4241-ad59-41d70c6e190f	e9334f05-85a9-45d3-b341-aacb77034f08	12	27179393	27179418	AATGTGGTCCTCCTGCCTCTTTCAAT	-	DEL	MED21	ENST00000282892	human	ensembl	74_37	+1	known	frame_shift_del	c.83_108	p.C29fs	1.000:1.000:1.000:1.000:1.000:1.000:0.995:0.686:1.000:1.000:0.944:1.000:1.000:0.985:1.000:1.000:0.995:1.000:1.000:0.994:1.000:1.000:0.997:1.000:1.000:1.000	pfam_Mediator_Med21	pfam_Mediator_Med21	-	no_errors	MED21	HGNC	ENSG00000152944	tier1			50	0	0.00	30	2	6.25	50	0	0.00	30	2	6.25
