Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
FIG4	0	genome.wustl.edu	37	6	110059609	110059609	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	6	110059609	110059609	A	G	SNP	FIG4	ENST00000230124	human	ensembl	74_37	+1	known	missense	c.728	p.H243R	1.000	pfam_Syja_N,pfscan_Syja_N	pfam_Syja_N,pfscan_Syja_N	-	no_errors	FIG4	HGNC	ENSG00000112367	tier1	-	-	54	0	0.00	57	15	20.83	101	1	0.98	75	32	29.91
ZNF608	0	genome.wustl.edu	37	5	123973290	123973290	+	R	SNP	G	G	A			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	5	123973290	123973290	G	A	SNP	ZNF608	ENST00000513985	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ZNF608	HGNC	ENSG00000168916	tier1	-	-	102	0	0.00	76	14	15.56	123	0	0.00	66	19	22.35
DJC11	0	genome.wustl.edu	37	1	6696236	6696236	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	1	6696236	6696236	C	T	SNP	DJC11	ENST00000377577	human	ensembl	74_37	-1	known	missense	c.1595	p.R532Q	0.999	pfam_DnaJ-like_C11_C	pfam_DnaJ-like_C11_C,pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DJC11	HGNC	ENSG00000007923	tier1	-	-	74	0	0.00	66	16	19.51	83	0	0.00	83	14	14.43
JPH2	0	genome.wustl.edu	37	20	42789014	42789014	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	20	42789014	42789014	C	T	SNP	JPH2	ENST00000372980	human	ensembl	74_37	-1	known	missense	c.413	p.R138H	1.000	pfam_MORN,smart_MORN,pirsf_Junctophilin	pfam_MORN,smart_MORN,pirsf_Junctophilin	-	no_errors	JPH2	HGNC	ENSG00000149596	tier1	-	-	90	0	0.00	73	11	13.10	25	0	0.00	17	4	19.05
C14orf39	0	genome.wustl.edu	37	14	60945104	60945104	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	14	60945104	60945104	C	T	SNP	C14orf39	ENST00000321731	human	ensembl	74_37	-1	known	nonsense	c.237	p.W79*	1.000	NULL	NULL	-	no_errors	C14orf39	HGNC	ENSG00000179008	tier1	-	-	123	0	0.00	71	48	40.34	58	0	0.00	49	21	30.00
PMP22	0	genome.wustl.edu	37	17	15134333	15134333	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	17	15134333	15134333	C	T	SNP	PMP22	ENST00000494511	human	ensembl	74_37	-1	novel	missense	c.205	p.G69R	0.000	NULL	NULL	-	no_errors	PMP22	HGNC	ENSG00000109099	tier1	-	-	64	0	0.00	41	11	21.15	69	0	0.00	71	12	13.95
PYGO1	0	genome.wustl.edu	37	15	55838428	55838428	+	Silent	SNP	G	G	A			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	15	55838428	55838428	G	A	SNP	PYGO1	ENST00000302000	human	ensembl	74_37	-1	known	silent	c.1053	p.N351	0.996	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PYGO1	HGNC	ENSG00000171016	tier1	-	-	17	0	0.00	15	4	21.05	96	0	0.00	44	16	26.67
CEP78	0	genome.wustl.edu	37	9	80879143	80879143	+	Silent	SNP	T	T	C			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	9	80879143	80879143	T	C	SNP	CEP78	ENST00000376597	human	ensembl	74_37	+1	known	silent	c.1539	p.N513	0.948	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	CEP78	HGNC	ENSG00000148019	tier1	-	-	71	0	0.00	40	26	39.39	88	0	0.00	42	25	37.31
TTLL10	0	genome.wustl.edu	37	1	1117778	1117778	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	1	1117778	1117778	C	T	SNP	TTLL10	ENST00000379289	human	ensembl	74_37	+1	known	missense	c.868	p.R290C	1.000	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL10	HGNC	ENSG00000162571	tier1	-	-	73	0	0.00	53	40	43.01	103	0	0.00	68	52	43.33
LAMA2	0	genome.wustl.edu	37	6	129826487	129826487	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	6	129826487	129826487	G	A	SNP	LAMA2	ENST00000421865	human	ensembl	74_37	+1	known	missense	c.8690	p.R2897Q	0.985	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,superfamily_t-SRE,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569	tier1	rs201696115	-	71	0	0.00	54	15	21.74	129	0	0.00	75	15	16.67
GSX2	0	genome.wustl.edu	37	4	54968099	54968099	+	R	SNP	T	T	C			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	4	54968099	54968099	T	C	SNP	GSX2	ENST00000548609	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GSX2	HGNC	ENSG00000180613	tier1	-	-	68	0	0.00	41	10	19.61	64	1	1.54	36	7	16.28
KIAA1731	0	genome.wustl.edu	37	11	93400776	93400776	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	11	93400776	93400776	C	T	SNP	KIAA1731	ENST00000411936	human	ensembl	74_37	+1	known	nonsense	c.112	p.R38*	1.000	NULL	NULL	-	no_errors	KIAA1731	HGNC	ENSG00000166004	tier1	-	-	96	0	0.00	29	11	27.50	108	0	0.00	39	11	22.00
RSE2	0	genome.wustl.edu	37	14	21424364	21424364	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	14	21424364	21424364	G	A	SNP	RSE2	ENST00000304625	human	ensembl	74_37	+1	known	missense	c.434	p.R145Q	0.000	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain,prints_RNaseA	-	no_errors	RSE2	HGNC	ENSG00000169385	tier1	-	-	77	0	0.00	53	54	50.47	25	0	0.00	12	8	40.00
FAM83G	0	genome.wustl.edu	37	17	18881217	18881217	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	17	18881217	18881217	C	T	SNP	FAM83G	ENST00000345041	human	ensembl	74_37	-1	known	missense	c.1762	p.V588I	0.853	NULL	pfam_DUF1669	-	no_errors	FAM83G	HGNC	ENSG00000188522	tier1	-	-	25	0	0.00	19	7	26.92	116	0	0.00	65	26	28.57
HIST1H4C	0	genome.wustl.edu	37	6	26104193	26104193	+	Silent	SNP	A	A	G			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	6	26104193	26104193	A	G	SNP	HIST1H4C	ENST00000377803	human	ensembl	74_37	+1	known	silent	c.18	p.K6	0.254	superfamily_Histone-fold,prints_Histone_H4	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	-	no_errors	HIST1H4C	HGNC	ENSG00000197061	tier1	-	-	29	0	0.00	12	11	45.83	122	0	0.00	51	40	43.96
PLEKHM2	0	genome.wustl.edu	37	1	16054813	16054813	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	1	16054813	16054813	G	A	SNP	PLEKHM2	ENST00000375799	human	ensembl	74_37	+1	known	missense	c.1882	p.V628M	1.000	NULL	pfam_Run,pfam_Pleckstrin_homology,smart_Run,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Run	-	no_errors	PLEKHM2	HGNC	ENSG00000116786	tier1	rs199779846	-	41	0	0.00	21	12	36.36	31	0	0.00	19	7	26.92
PPIL6	0	genome.wustl.edu	37	6	109714072	109714072	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	6	109714072	109714072	A	G	SNP	PPIL6	ENST00000521072	human	ensembl	74_37	-1	known	missense	c.893	p.I298T	0.001	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIL6	HGNC	ENSG00000185250	tier1	-	-	39	0	0.00	40	5	11.11	121	0	0.00	98	23	19.01
TDRD7	0	genome.wustl.edu	37	9	100240849	100240849	+	Silent	SNP	A	A	G			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	9	100240849	100240849	A	G	SNP	TDRD7	ENST00000355295	human	ensembl	74_37	+1	known	silent	c.2295	p.P765	1.000	pfam_Tudor	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD7	HGNC	ENSG00000196116	tier1	-	-	74	0	0.00	69	16	18.60	131	1	0.76	104	21	16.80
RNF217	0	genome.wustl.edu	37	6	125330511	125330511	+	R	SNP	C	C	T			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	6	125330511	125330511	C	T	SNP	RNF217	ENST00000431104	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RNF217	HGNC	ENSG00000146373	tier1	-	-	51	0	0.00	36	17	32.08	113	1	0.88	74	23	23.71
PHKA1	0	genome.wustl.edu	37	X	71855041	71855041	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	X	71855041	71855041	G	A	SNP	PHKA1	ENST00000373539	human	ensembl	74_37	-1	known	missense	c.1678	p.P560S	1.000	pfam_Glyco_hydro_15	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKA1	HGNC	ENSG00000067177	tier1	-	-	33	0	0.00	38	12	24.00	23	0	0.00	22	7	24.14
LINGO1	0	genome.wustl.edu	37	15	77906924	77906924	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	15	77906924	77906924	A	G	SNP	LINGO1	ENST00000355300	human	ensembl	74_37	-1	known	missense	c.1325	p.V442A	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Leu-rich_rpt,pfam_Ig_I-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LINGO1	HGNC	ENSG00000169783	tier1	-	-	31	0	0.00	13	5	27.78	28	0	0.00	16	6	27.27
MARK4	0	genome.wustl.edu	37	19	45801209	45801209	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	19	45801209	45801209	G	A	SNP	MARK4	ENST00000262891	human	ensembl	74_37	+1	known	missense	c.1874	p.R625Q	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_KA1_dom,pfam_UBA/Ts_N,superfamily_Kinase-like_dom,superfamily_KA1/Ssp2_C,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	MARK4	HGNC	ENSG00000007047	tier1	-	-	26	0	0.00	18	5	21.74	20	0	0.00	23	5	17.86
ABCB4	0	genome.wustl.edu	37	7	87104780	87104780	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	7	87104780	87104780	A	G	SNP	ABCB4	ENST00000265723	human	ensembl	74_37	-1	known	missense	c.2	p.M1T	1.000	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,pfam_Zeta_toxin_domain,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB4	HGNC	ENSG00000005471	tier1	-	-	122	0	0.00	71	26	26.80	57	0	0.00	42	5	10.64
ZNF229	0	genome.wustl.edu	37	19	44933794	44933794	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	19	44933794	44933794	G	A	SNP	ZNF229	ENST00000588931	human	ensembl	74_37	-1	known	nonsense	c.1162	p.R388*	0.004	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF229	HGNC	ENSG00000167383	tier1	-	-	98	0	0.00	24	77	76.24	128	0	0.00	50	136	73.12
ATP13A5	0	genome.wustl.edu	37	3	193028437	193028437	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	3	193028437	193028437	G	C	SNP	ATP13A5	ENST00000342358	human	ensembl	74_37	-1	known	missense	c.2515	p.Q839E	1.000	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_Cation_typ_V,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A5	HGNC	ENSG00000187527	tier1	-	-	46	0	0.00	42	12	22.22	108	0	0.00	59	13	18.06
TRIM51HP	0	genome.wustl.edu	37	11	55063041	55063041	+	R	SNP	T	T	G			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	11	55063041	55063041	T	G	SNP	TRIM51HP	ENST00000526016	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.155	-	-	-	no_errors	TRIM51HP	HGNC	ENSG00000166007	tier1	-	-	196	0	0.00	155	39	20.00	31	0	0.00	14	4	22.22
NELL1	0	genome.wustl.edu	37	11	20699519	20699519	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	11	20699519	20699519	G	A	SNP	NELL1	ENST00000357134	human	ensembl	74_37	+1	known	missense	c.97	p.V33I	0.660	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_EGF-like_Ca-bd_dom,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL1	HGNC	ENSG00000165973	tier1	-	-	52	0	0.00	27	24	47.06	119	0	0.00	55	41	42.27
SLC8A2	0	genome.wustl.edu	37	19	47969082	47969082	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	19	47969082	47969082	C	G	SNP	SLC8A2	ENST00000236877	human	ensembl	74_37	-1	known	missense	c.579	p.K193N	1.000	pfam_NaCa_Exmemb,tigrfam_Na_Ca_Ex	pfam_Calx_beta,pfam_NaCa_Exmemb,smart_Calx_beta,prints_Na_Ca_Ex,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A2	HGNC	ENSG00000118160	tier1	-	-	53	0	0.00	31	8	20.51	81	0	0.00	47	7	12.96
OR4M1	0	genome.wustl.edu	37	14	20249201	20249201	+	Silent	SNP	C	C	G			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	14	20249201	20249201	C	G	SNP	OR4M1	ENST00000315957	human	ensembl	74_37	+1	known	silent	c.720	p.S240	0.994	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4M1	HGNC	ENSG00000176299	tier1	-	-	202	0	0.00	163	27	14.21	144	0	0.00	116	15	11.45
RALYL	0	genome.wustl.edu	37	8	85686863	85686863	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	8	85686863	85686863	C	A	SNP	RALYL	ENST00000521268	human	ensembl	74_37	+1	known	missense	c.306	p.N102K	1.000	pirsf_hnRNP_C_Raly	pfam_RRM_dom,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	RALYL	HGNC	ENSG00000184672	tier1	-	-	88	0	0.00	38	13	25.49	141	1	0.70	63	21	25.00
HSPA1B	0	genome.wustl.edu	37	6	31797299	31797299	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	6	31797299	31797299	G	T	SNP	HSPA1B	ENST00000375650	human	ensembl	74_37	+1	known	missense	c.1572	p.K524N	0.991	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA1B	HGNC	ENSG00000204388	tier1	-	-	46	0	0.00	24	4	14.29	13	0	0.00	11	2	15.38
C3orf52	0	genome.wustl.edu	37	3	111849243	111849243	+	R	SNP	G	G	A			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	3	111849243	111849243	G	A	SNP	C3orf52	ENST00000467942	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C3orf52	HGNC	ENSG00000114529	tier1	-	-	72	0	0.00	65	18	21.69	125	0	0.00	96	24	20.00
MMP24	0	genome.wustl.edu	37	20	33851599	33851599	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	20	33851599	33851599	G	A	SNP	MMP24	ENST00000246186	human	ensembl	74_37	+1	known	missense	c.823	p.D275N	1.000	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP24	HGNC	ENSG00000125966	tier1	-	-	36	0	0.00	39	7	15.22	42	0	0.00	25	5	16.67
CLK1	0	genome.wustl.edu	37	2	201726031	201726035	+	Frame_Shift_Del	DEL	CTACC	CTACC	-			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	CTACC	CTACC	CTACC	-	CTACC	CTACC	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	2	201726031	201726035	CTACC	-	DEL	CLK1	ENST00000321356	human	ensembl	74_37	-1	known	frame_shift_del	c.320_316	p.G106fs	1.000:0.999:0.997:1.000:1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CLK1	HGNC	ENSG00000013441	tier1			127	0	0.00	57	24	29.63	127	0	0.00	57	24	29.63
TP53	0	genome.wustl.edu	37	17	7579328	7579329	+	Frame_Shift_Ins	INS	-	-	TAAG			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	-	-	-	TAAG	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	17	7579328	7579329	-	TAAG	INS	TP53	ENST00000269305	human	ensembl	74_37	-1	known	frame_shift_ins	c.359_358	p.K120fs	1.000:1.000	pfam_p53_D-bd,superfamily_p53-like_TF_D-bd,prints_p53_tumour_suppressor	pfam_p53_D-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_D-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1			126	0	0.00	88	60	40.54	98	0	0.00	46	29	38.67
VCX2	0	genome.wustl.edu	37	X	8138101	8138101	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	X	8138101	8138101	A	T	SNP	VCX2	ENST00000317103	human	ensembl	74_37	-1	known	missense	c.392	p.F131Y	0.000	NULL	NULL	-	no_errors	VCX2	HGNC	ENSG00000177504	tier1	-	-	70	0	0.00	20	37	64.91	13	0	0.00	2	6	75.00
ALDH1L1	0	genome.wustl.edu	37	3	125855695	125855695	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	3	125855695	125855695	C	T	SNP	ALDH1L1	ENST00000393434	human	ensembl	74_37	-1	known	missense	c.1256	p.R419H	0.001	superfamily_Ald_DH/histidinol_DH,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH	pfam_Aldehyde_DH_dom,pfam_Formyl_transf_N,pfam_Formyl_trans_C,pfam_Acyl_carrier_prot-like,superfamily_Ald_DH/histidinol_DH,superfamily_Formyl_transf_N,superfamily_Formyl_transferase_C-like,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH,pfscan_Acyl_carrier_prot-like	-	no_errors	ALDH1L1	HGNC	ENSG00000144908	tier1	-	-	36	0	0.00	35	4	10.26	65	0	0.00	63	4	5.88
CDH15	0	genome.wustl.edu	37	16	89251598	89251598	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	16	89251598	89251598	G	T	SNP	CDH15	ENST00000289746	human	ensembl	74_37	+1	known	missense	c.520	p.A174S	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH15	HGNC	ENSG00000129910	tier1	-	-	55	0	0.00	38	4	9.30	10	0	0.00	7	0	0.00
NPIPB11	0	genome.wustl.edu	37	16	29394893	29394895	+	In_Frame_Del	DEL	TAT	TAT	-			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	TAT	TAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	16	29394893	29394895	TAT	-	DEL	NPIPB11	ENST00000524087	human	ensembl	74_37	-1	putative	in_frame_del	c.1360_1358	p.N453in_frame_del	0.023:0.025:0.027	NULL	NULL	-	no_errors	NPIPB11	HGNC	ENSG00000254206	tier1			12	0	0.00	9	8	47.06	0	0	0.00	0	0	0.00
RASD1	0	genome.wustl.edu	37	17	17398573	17398578	+	In_Frame_Del	DEL	CGCCGC	CGCCGC	-			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	CGCCGC	CGCCGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	17	17398573	17398578	CGCCGC	-	DEL	RASD1	ENST00000225688	human	ensembl	74_37	-1	known	in_frame_del	c.712_707	p.GG236in_frame_del	0.406:0.464:0.573:0.575:0.556:0.538	smart_Ran_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RASD1	HGNC	ENSG00000108551	tier1			2	0	0.00	0	0	0.00	2	0	0.00	0	0	0.00
ROBO3	0	genome.wustl.edu	37	11	124738935	124738935	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	11	124738935	124738935	G	A	SNP	ROBO3	ENST00000397801	human	ensembl	74_37	+1	known	missense	c.398	p.R133H	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO3	HGNC	ENSG00000154134	tier1	-	-	36	0	0.00	12	8	40.00	0	0	0.00	0	0	0.00
SARDH	0	genome.wustl.edu	37	9	136535785	136535785	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7ET-01A-11D-A36J-09	TCGA-DX-A7ET-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a1ae916d-acc8-4d6b-a887-073d27e808bf	d67007dd-9b20-44e4-9926-6d7cc9543082	9	136535785	136535785	G	A	SNP	SARDH	ENST00000371872	human	ensembl	74_37	-1	known	missense	c.2416	p.P806S	1.000	NULL	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C	-	no_errors	SARDH	HGNC	ENSG00000123453	tier1	-	-	76	0	0.00	50	6	10.71	1	0	0.00	4	1	20.00
