Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
C5orf15	0	genome.wustl.edu	37	5	133295199	133295199	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	5	133295199	133295199	G	C	SNP	C5orf15	ENST00000231512	human	ensembl	74_37	-1	known	missense	c.652	p.H218D	1.000	NULL	NULL	-	no_errors	C5orf15	HGNC	ENSG00000113583	tier1	-	-	116	0	0.00	37	17	31.48	92	0	0.00	43	19	29.69
TTK	0	genome.wustl.edu	37	6	80737669	80737669	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	6	80737669	80737669	C	T	SNP	TTK	ENST00000369798	human	ensembl	74_37	+1	known	missense	c.1462	p.P488S	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TTK	HGNC	ENSG00000112742	tier1	-	-	79	0	0.00	35	5	12.50	104	0	0.00	75	29	27.88
MS4A2	0	genome.wustl.edu	37	11	59860903	59860903	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	11	59860903	59860903	A	G	SNP	MS4A2	ENST00000278888	human	ensembl	74_37	+1	known	missense	c.409	p.S137G	0.231	pfam_CD20-like	pfam_CD20-like	-	no_errors	MS4A2	HGNC	ENSG00000149534	tier1	-	-	106	0	0.00	20	12	37.50	96	0	0.00	39	29	42.65
CALB1	0	genome.wustl.edu	37	8	91094268	91094268	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	8	91094268	91094268	T	C	SNP	CALB1	ENST00000265431	human	ensembl	74_37	-1	known	missense	c.142	p.K48E	0.999	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CALB1	HGNC	ENSG00000104327	tier1	-	-	76	0	0.00	11	5	31.25	51	0	0.00	12	4	25.00
GAB	0	genome.wustl.edu	37	11	62400998	62400998	+	R	SNP	G	G	T			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	11	62400998	62400998	G	T	SNP	GAB	ENST00000534422	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	GAB	HGNC	ENSG00000089597	tier1	-	-	58	0	0.00	16	4	20.00	55	0	0.00	51	14	21.21
HPN	0	genome.wustl.edu	37	19	35551321	35551321	+	Silent	SNP	G	G	A			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	19	35551321	35551321	G	A	SNP	HPN	ENST00000262626	human	ensembl	74_37	+1	known	silent	c.525	p.P175	0.003	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Hepsin-SRCR,superfamily_Trypsin-like_Pept_dom,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	HPN	HGNC	ENSG00000105707	tier1	rs35890010	-	93	0	0.00	23	14	37.84	15	0	0.00	14	4	22.22
SYT3	0	genome.wustl.edu	37	19	51140536	51140536	+	Silent	SNP	G	G	T			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	19	51140536	51140536	G	T	SNP	SYT3	ENST00000338916	human	ensembl	74_37	-1	known	silent	c.133	p.R45	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,prints_Synaptotagmin,prints_C2_dom,pfscan_C2_dom	-	no_errors	SYT3	HGNC	ENSG00000213023	tier1	-	-	128	0	0.00	20	6	23.08	45	0	0.00	23	7	23.33
TP53	0	genome.wustl.edu	37	17	7578290	7578290	+	Splice_Site	SNP	C	C	G			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	17	7578290	7578290	C	G	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	splice_site	c.560-1	e5-1	1.000	-	-	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	84	0	0.00	11	22	66.67	88	0	0.00	44	86	66.15
DUOX2	0	genome.wustl.edu	37	15	45400250	45400250	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	15	45400250	45400250	C	G	SNP	DUOX2	ENST00000389039	human	ensembl	74_37	-1	known	missense	c.1569	p.R523S	0.011	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Fe_red_D-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF_hand_dom,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr,prints_Recoverin	-	no_errors	DUOX2	HGNC	ENSG00000140279	tier1	-	-	216	0	0.00	105	10	8.70	42	0	0.00	35	6	14.63
SCN2A	0	genome.wustl.edu	37	2	166246020	166246020	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	2	166246020	166246020	C	T	SNP	SCN2A	ENST00000283256	human	ensembl	74_37	+1	known	missense	c.5704	p.R1902C	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531	tier1	-	-	55	0	0.00	21	7	25.00	125	0	0.00	79	12	13.04
DUOX2	0	genome.wustl.edu	37	15	45394058	45394058	+	Silent	SNP	C	C	A			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	15	45394058	45394058	C	A	SNP	DUOX2	ENST00000389039	human	ensembl	74_37	-1	known	silent	c.2784	p.L928	1.000	NULL	pfam_Haem_peroxidase_animal,pfam_Fe_red_D-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF_hand_dom,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr,prints_Recoverin	-	no_errors	DUOX2	HGNC	ENSG00000140279	tier1	-	-	86	0	0.00	28	8	22.22	51	0	0.00	55	7	11.29
TMEM108	0	genome.wustl.edu	37	3	133109090	133109090	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	3	133109090	133109090	G	A	SNP	TMEM108	ENST00000321871	human	ensembl	74_37	+1	known	missense	c.1517	p.S506N	1.000	NULL	NULL	-	no_errors	TMEM108	HGNC	ENSG00000144868	tier1	-	-	63	0	0.00	39	4	9.30	165	0	0.00	109	14	11.38
MPDZ	0	genome.wustl.edu	37	9	13205963	13205963	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	9	13205963	13205963	C	T	SNP	MPDZ	ENST00000319217	human	ensembl	74_37	-1	known	missense	c.1426	p.V476I	0.000	superfamily_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	MPDZ	HGNC	ENSG00000107186	tier1	-	-	65	0	0.00	27	11	28.95	69	1	1.43	31	23	42.59
KRT82	0	genome.wustl.edu	37	12	52797693	52797693	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	12	52797693	52797693	C	A	SNP	KRT82	ENST00000257974	human	ensembl	74_37	-1	known	missense	c.412	p.V138F	1.000	pfam_IF	pfam_IF,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT82	HGNC	ENSG00000161850	tier1	-	-	43	0	0.00	12	3	20.00	77	0	0.00	45	7	13.46
SPTB	0	genome.wustl.edu	37	14	65234023	65234023	+	Silent	SNP	A	A	T			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	14	65234023	65234023	A	T	SNP	SPTB	ENST00000389722	human	ensembl	74_37	-1	known	silent	c.6267	p.T2089	0.838	pirsf_Spectrin_bsu,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Pleckstrin_homology,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTB	HGNC	ENSG00000070182	tier1	-	-	81	0	0.00	26	4	13.33	78	0	0.00	42	12	22.22
KIAA1429	0	genome.wustl.edu	37	8	95556150	95556150	+	Silent	SNP	C	C	A			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	8	95556150	95556150	C	A	SNP	KIAA1429	ENST00000297591	human	ensembl	74_37	-1	known	silent	c.84	p.V28	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	KIAA1429	HGNC	ENSG00000164944	tier1	-	-	94	0	0.00	36	6	14.29	95	1	1.04	71	12	14.29
DOCK7	0	genome.wustl.edu	37	1	63097073	63097073	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	1	63097073	63097073	T	C	SNP	DOCK7	ENST00000251157	human	ensembl	74_37	-1	known	missense	c.1120	p.K374E	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,superfamily_ARM-type_fold	-	no_errors	DOCK7	HGNC	ENSG00000116641	tier1	-	-	48	0	0.00	23	7	23.33	78	0	0.00	80	33	29.20
ATP13A2	0	genome.wustl.edu	37	1	17322893	17322893	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	1	17322893	17322893	G	A	SNP	ATP13A2	ENST00000326735	human	ensembl	74_37	-1	known	missense	c.1294	p.L432F	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_Cation_typ_V,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A2	HGNC	ENSG00000159363	tier1	-	-	215	0	0.00	63	23	26.74	38	0	0.00	26	9	25.71
NOP2	0	genome.wustl.edu	37	12	6671112	6671112	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	12	6671112	6671112	A	T	SNP	NOP2	ENST00000322166	human	ensembl	74_37	-1	known	missense	c.1004	p.L335Q	1.000	pfam_Fmu/NOL1/Nop2p,tigrfam_Nop2p	pfam_Fmu/NOL1/Nop2p,pfam_P120R,pfam_rR_MeTrfase_FtsJ_dom,prints_RCMT,prints_RCMT_NOP2,tigrfam_Nop2p	-	no_errors	NOP2	HGNC	ENSG00000111641	tier1	-	-	120	0	0.00	34	9	20.93	104	0	0.00	62	18	22.50
IRX4	0	genome.wustl.edu	37	5	1879802	1879802	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	5	1879802	1879802	C	T	SNP	IRX4	ENST00000231357	human	ensembl	74_37	-1	known	missense	c.552	p.M184I	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX4	HGNC	ENSG00000113430	tier1	-	-	135	0	0.00	78	21	21.21	49	0	0.00	41	13	24.07
ENSG00000216194	0	genome.wustl.edu	37	8	7315547	7315547	+	R	SNP	A	A	G			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	8	7315547	7315547	A	G	SNP	ENSG00000216194	ENST00000401375	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.007	-	-	-	no_errors	AC130360.1	Clone_based_ensembl_gene	ENSG00000216194	tier1	-	-	174	0	0.00	52	7	11.86	22	0	0.00	11	2	15.38
ATP11A	0	genome.wustl.edu	37	13	113473690	113473690	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	13	113473690	113473690	G	A	SNP	ATP11A	ENST00000375630	human	ensembl	74_37	+1	known	missense	c.643	p.E215K	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP11A	HGNC	ENSG00000068650	tier1	-	-	95	0	0.00	33	10	23.26	82	0	0.00	80	16	16.67
MAPK8IP3	0	genome.wustl.edu	37	16	1812437	1812437	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	16	1812437	1812437	G	A	SNP	MAPK8IP3	ENST00000250894	human	ensembl	74_37	+1	known	missense	c.1622	p.R541Q	1.000	NULL	pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom	-	no_errors	MAPK8IP3	HGNC	ENSG00000138834	tier1	-	-	146	0	0.00	78	7	8.24	39	0	0.00	45	5	10.00
ZZZ3	0	genome.wustl.edu	37	1	78031789	78031789	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	1	78031789	78031789	A	T	SNP	ZZZ3	ENST00000370801	human	ensembl	74_37	-1	known	missense	c.2544	p.D848E	1.000	pfam_Znf_ZZ,pfscan_Znf_ZZ	pfam_SANT/Myb,pfam_Znf_ZZ,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Znf_ZZ,pfscan_Myb-like_dom	-	no_errors	ZZZ3	HGNC	ENSG00000036549	tier1	-	-	87	0	0.00	62	29	31.87	93	0	0.00	85	22	20.56
LCP2	0	genome.wustl.edu	37	5	169720342	169720342	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	5	169720342	169720342	T	A	SNP	LCP2	ENST00000046794	human	ensembl	74_37	-1	known	missense	c.113	p.K38M	0.911	pfam_SAM_2,superfamily_SAM/pointed,smart_SAM	pfam_SH2,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,smart_SH2,pfscan_SH2	-	no_errors	LCP2	HGNC	ENSG00000043462	tier1	-	-	109	0	0.00	22	10	31.25	162	0	0.00	59	22	27.16
HSPG2	0	genome.wustl.edu	37	1	22169884	22169885	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	AG	AG	AG	-	AG	AG	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	1	22169884	22169885	AG	-	DEL	HSPG2	ENST00000374695	human	ensembl	74_37	-1	known	frame_shift_del	c.8664_8663	p.S2888fs	0.999:1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_V-set_subgr,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA_dom,pfscan_Ig-like_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	HSPG2	HGNC	ENSG00000142798	tier1			145	0	0.00	31	6	16.22	22	0	0.00	24	9	27.27
UTP14A	0	genome.wustl.edu	37	X	129055621	129055622	+	R	INS	-	-	A			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	X	129055621	129055622	-	A	INS	UTP14A	ENST00000498179	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.001	-	-	-	no_errors	UTP14A	HGNC	ENSG00000156697	tier1			38	0	0.00	15	3	16.67	75	1	1.32	33	4	10.81
SLC6A9	0	genome.wustl.edu	37	1	44466534	44466534	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	1	44466534	44466534	G	A	SNP	SLC6A9	ENST00000360584	human	ensembl	74_37	-1	known	missense	c.1660	p.R554W	0.995	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_glycine_GLY1	-	no_errors	SLC6A9	HGNC	ENSG00000196517	tier1	-	-	122	0	0.00	47	20	29.85	56	0	0.00	38	4	9.52
LINC00470	0	genome.wustl.edu	37	18	1276028	1276028	+	R	SNP	T	T	C			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	18	1276028	1276028	T	C	SNP	LINC00470	ENST00000269201	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.057	-	-	-	no_errors	LINC00470	HGNC	ENSG00000132204	tier1	-	-	148	0	0.00	41	5	10.87	99	0	0.00	108	10	8.47
PPARG	0	genome.wustl.edu	37	3	12458565	12458565	+	Silent	SNP	C	C	G			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	3	12458565	12458565	C	G	SNP	PPARG	ENST00000287820	human	ensembl	74_37	+1	known	silent	c.1182	p.P394	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_1Cnucl_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_PPARgamma_N,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_1Cnucl_rcpt,prints_1Cnucl_rcpt_G,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	PPARG	HGNC	ENSG00000132170	tier1	-	-	95	0	0.00	35	4	10.26	93	0	0.00	66	6	8.33
ACHE	0	genome.wustl.edu	37	7	100491105	100491105	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	7	100491105	100491105	C	T	SNP	ACHE	ENST00000302913	human	ensembl	74_37	-1	known	missense	c.749	p.R250Q	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Cholinesterase	-	no_errors	ACHE	HGNC	ENSG00000087085	tier1	-	-	44	0	0.00	12	4	25.00	13	0	0.00	6	0	0.00
DNM1P34	0	genome.wustl.edu	37	15	75593138	75593138	+	R	DEL	A	A	-			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	15	75593138	75593138	A	-	DEL	DNM1P34	ENST00000567292	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DNM1P34	HGNC	ENSG00000260357	tier1			37	0	0.00	6	2	25.00	11	0	0.00	5	0	0.00
DSPP	0	genome.wustl.edu	37	4	88536614	88536614	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	4	88536614	88536614	A	G	SNP	DSPP	ENST00000282478	human	ensembl	74_37	+1	known	missense	c.2800	p.N934D	0.354	NULL	NULL	-	no_errors	DSPP	HGNC	ENSG00000152591	tier1	-	-	120	1	0.83	55	6	9.84	22	0	0.00	4	0	0.00
EXD3	0	genome.wustl.edu	37	9	140243836	140243836	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	9	140243836	140243836	G	-	DEL	EXD3	ENST00000340951	human	ensembl	74_37	-1	known	frame_shift_del	c.1642	p.Q548fs	0.993	pfam_3'-5'_exonuclease_dom,superfamily_RNaseH-like_dom,smart_3'-5'_exonuclease_dom	pfam_Mut7-C_Rse_dom,pfam_3'-5'_exonuclease_dom,superfamily_RNaseH-like_dom,smart_3'-5'_exonuclease_dom	-	no_errors	EXD3	HGNC	ENSG00000187609	tier1			59	0	0.00	21	2	8.70	8	0	0.00	7	0	0.00
NLRP1	0	genome.wustl.edu	37	17	5436697	5436697	+	Silent	SNP	C	C	T			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	17	5436697	5436697	C	T	SNP	NLRP1	ENST00000572272	human	ensembl	74_37	-1	known	silent	c.3060	p.A1020	0.001	NULL	pfam_CARD,pfam_DAPIN,pfam_Leu-rich_rpt,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_CHT_NTPase,pfscan_CARD,pfscan_DAPIN,prints_Disease_R	-	no_errors	NLRP1	HGNC	ENSG00000091592	tier1	-	-	16	0	0.00	4	6	60.00	0	0	0.00	0	0	0.00
RIMBP2	0	genome.wustl.edu	37	12	130921759	130921759	+	Silent	SNP	G	G	A			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	12	130921759	130921759	G	A	SNP	RIMBP2	ENST00000261655	human	ensembl	74_37	-1	known	silent	c.1683	p.G561	0.038	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	RIMBP2	HGNC	ENSG00000060709	tier1	-	-	56	0	0.00	18	4	18.18	0	0	0.00	3	0	0.00
SEMA4B	0	genome.wustl.edu	37	15	90744945	90744945	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	15	90744945	90744945	C	-	DEL	SEMA4B	ENST00000332496	human	ensembl	74_37	+1	known	frame_shift_del	c.135	p.R47fs	0.781	superfamily_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA4B	HGNC	ENSG00000185033	tier1			17	0	0.00	11	2	15.38	0	0	0.00	0	0	0.00
SYT8	0	genome.wustl.edu	37	11	1856592	1856592	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	11	1856592	1856592	G	T	SNP	SYT8	ENST00000381968	human	ensembl	74_37	+1	known	missense	c.203	p.C68F	0.513	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin	-	no_errors	SYT8	HGNC	ENSG00000149043	tier1	-	-	81	0	0.00	21	4	16.00	3	0	0.00	4	0	0.00
WASH6P	0	genome.wustl.edu	37	X	155253591	155253591	+	R	SNP	G	G	A			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	X	155253591	155253591	G	A	SNP	WASH6P	ENST00000461007	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	WASH6P	HGNC	ENSG00000182484	tier1	-	-	245	0	0.00	62	10	13.89	0	0	0.00	0	0	0.00
DSCAML1	0	genome.wustl.edu	37	11	117308034	117308034	+	Silent	SNP	G	G	A			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	11	117308034	117308034	G	A	SNP	DSCAML1	ENST00000321322	human	ensembl	74_37	-1	known	silent	c.4704	p.C1568	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAML1	HGNC	ENSG00000177103	tier1	-	-	58	0	0.00	12	3	20.00	92	0	0.00	48	2	4.00
TRPM6	0	genome.wustl.edu	37	9	77436669	77436669	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	9	77436669	77436669	T	A	SNP	TRPM6	ENST00000451710	human	ensembl	74_37	-1	known	missense	c.926	p.D309V	0.883	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121	tier1	-	-	110	0	0.00	44	6	12.00	97	0	0.00	62	2	3.12
C18orf61	0	genome.wustl.edu	37	18	12211904	12211904	+	R	SNP	C	C	T			TCGA-DX-A8BK-01A-11D-A37C-09	TCGA-DX-A8BK-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb69acbd-68de-47c8-9f21-643be150e2e8	ad86364a-9f45-4c31-a547-3de1dc9c8120	18	12211904	12211904	C	T	SNP	C18orf61	ENST00000586642	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-64C12.3	Clone_based_vega_gene	ENSG00000267733	tier1	-	-	103	0	0.00	34	8	19.05	30	0	0.00	28	2	6.67
