Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
KIAA1549L	0	genome.wustl.edu	37	11	33569421	33569421	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	11	33569421	33569421	C	T	SNP	KIAA1549L	ENST00000389726	human	ensembl	74_37	+1	known	missense	c.2624	p.A875V	1.000	NULL	NULL	-	no_errors	KIAA1549L	HGNC	ENSG00000110427	tier1	-	-	43	0	0.00	20	11	35.48	110	0	0.00	63	23	26.74
PRPF6	0	genome.wustl.edu	37	20	62614400	62614400	+	Silent	SNP	C	C	T			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	20	62614400	62614400	C	T	SNP	PRPF6	ENST00000266079	human	ensembl	74_37	+1	known	silent	c.72	p.G24	0.848	pfam_PRP1_N	pfam_PRP1_N,smart_HAT,smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PRPF6	HGNC	ENSG00000101161	tier1	-	-	44	0	0.00	32	13	28.89	60	0	0.00	54	13	19.40
HIP1	0	genome.wustl.edu	37	7	75228536	75228536	+	Silent	SNP	C	C	T			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	7	75228536	75228536	C	T	SNP	HIP1	ENST00000336926	human	ensembl	74_37	-1	known	silent	c.150	p.T50	0.695	pfam_ANTH_dom,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	pfam_ANTH_dom,pfam_ILWEQ_dom,pfam_Epsin_dom_N,superfamily_ENTH_VHS,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Epsin-like_N,smart_ILWEQ_dom,pfscan_Epsin-like_N,pfscan_ILWEQ_dom	-	no_errors	HIP1	HGNC	ENSG00000127946	tier1	-	-	43	0	0.00	37	8	17.78	93	0	0.00	104	22	17.46
DJC6	0	genome.wustl.edu	37	1	65871755	65871755	+	Silent	SNP	C	C	T			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	1	65871755	65871755	C	T	SNP	DJC6	ENST00000371069	human	ensembl	74_37	+1	known	silent	c.2430	p.N810	0.096	superfamily_DnaJ_domain	pfam_Tensin_phosphatase_C2-dom,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_C2_dom,smart_DnaJ_domain,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom,pfscan_DnaJ_domain	-	no_errors	DJC6	HGNC	ENSG00000116675	tier1	-	-	62	0	0.00	28	13	31.71	94	0	0.00	81	31	27.68
CSMD1	0	genome.wustl.edu	37	8	3265506	3265506	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	8	3265506	3265506	C	A	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.1989	p.Q663H	0.991	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	tier1	-	-	30	0	0.00	37	10	21.28	103	0	0.00	88	29	24.79
ASIP	0	genome.wustl.edu	37	20	32848194	32848194	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	20	32848194	32848194	G	A	SNP	ASIP	ENST00000374954	human	ensembl	74_37	+1	known	missense	c.14	p.R5H	0.668	NULL	pfam_Agouti,superfamily_Agouti_dom,smart_Agouti,pfscan_Agouti_dom	-	no_errors	ASIP	HGNC	ENSG00000101440	tier1	rs145074053	-	52	0	0.00	57	13	18.57	74	0	0.00	52	12	18.75
TMEM2	0	genome.wustl.edu	37	9	74360217	74360217	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	9	74360217	74360217	C	A	SNP	TMEM2	ENST00000377044	human	ensembl	74_37	-1	known	missense	c.751	p.G251C	1.000	NULL	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	TMEM2	HGNC	ENSG00000135048	tier1	rs139832017	-	46	0	0.00	42	12	21.82	106	0	0.00	109	32	22.70
TAF1D	0	genome.wustl.edu	37	11	93468208	93468208	+	R	SNP	T	T	A			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	11	93468208	93468208	T	A	SNP	TAF1D	ENST00000530089	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	TAF1D	HGNC	ENSG00000166012	tier1	-	-	32	0	0.00	15	8	34.78	30	0	0.00	16	9	36.00
PLEC	0	genome.wustl.edu	37	8	144995433	144995433	+	Silent	SNP	G	G	A			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	8	144995433	144995433	G	A	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	silent	c.8967	p.G2989	1.000	smart_Plectin_repeat	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209	tier1	-	-	60	0	0.00	58	17	22.67	10	0	0.00	10	3	23.08
HIST1H3E	0	genome.wustl.edu	37	6	26225736	26225736	+	Silent	SNP	G	G	A			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	6	26225736	26225736	G	A	SNP	HIST1H3E	ENST00000360408	human	ensembl	74_37	+1	known	silent	c.354	p.V118	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3E	HGNC	ENSG00000196966	tier1	-	-	91	0	0.00	60	16	21.05	57	0	0.00	49	12	19.67
FGF23	0	genome.wustl.edu	37	12	4488550	4488550	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	12	4488550	4488550	G	A	SNP	FGF23	ENST00000237837	human	ensembl	74_37	-1	known	nonsense	c.199	p.Q67*	0.992	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	-	no_errors	FGF23	HGNC	ENSG00000118972	tier1	-	-	22	0	0.00	13	5	27.78	105	0	0.00	49	25	33.78
ZC2HC1A	0	genome.wustl.edu	37	8	79609735	79609735	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	8	79609735	79609735	G	T	SNP	ZC2HC1A	ENST00000263849	human	ensembl	74_37	+1	known	missense	c.598	p.V200F	0.868	NULL	NULL	-	no_errors	ZC2HC1A	HGNC	ENSG00000104427	tier1	-	-	76	0	0.00	85	11	11.46	160	0	0.00	148	30	16.85
CHMP7	0	genome.wustl.edu	37	8	23115855	23115855	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	8	23115855	23115855	C	G	SNP	CHMP7	ENST00000313219	human	ensembl	74_37	+1	known	missense	c.853	p.L285V	1.000	pfam_Snf7	pfam_Snf7	-	no_errors	CHMP7	HGNC	ENSG00000147457	tier1	-	-	23	0	0.00	23	12	34.29	46	0	0.00	84	10	10.53
TERT	0	genome.wustl.edu	37	5	1279444	1279444	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	5	1279444	1279444	G	A	SNP	TERT	ENST00000310581	human	ensembl	74_37	-1	known	missense	c.2092	p.R698W	0.757	pfscan_RVT	pfam_Telomerase_RBD,pfam_RVT,smart_Telomerase_RBD,pfscan_RVT,prints_Telomerase_RT	-	no_errors	TERT	HGNC	ENSG00000164362	tier1	-	-	75	0	0.00	84	29	25.66	18	0	0.00	15	8	34.78
TIGD7	0	genome.wustl.edu	37	16	3350579	3350579	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	16	3350579	3350579	C	A	SNP	TIGD7	ENST00000268674	human	ensembl	74_37	-1	known	missense	c.36	p.L12F	1.000	pfam_HTH_Psq,superfamily_Homeodomain-like,pfscan_HTH_Psq	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_D-bd_dom,pfam_HTH_Psq,superfamily_Homeodomain-like,smart_HTH_CenpB_D-bd_dom,pfscan_HTH_Psq	-	no_errors	TIGD7	HGNC	ENSG00000140993	tier1	-	-	77	0	0.00	29	19	38.78	159	0	0.00	72	33	31.43
GDF2	0	genome.wustl.edu	37	10	48414171	48414171	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	10	48414171	48414171	G	A	SNP	GDF2	ENST00000249598	human	ensembl	74_37	-1	known	missense	c.697	p.H233Y	0.615	pfam_TGF-b_N	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	GDF2	HGNC	ENSG00000128802	tier1	-	-	29	0	0.00	25	6	19.35	52	0	0.00	45	16	26.23
WNK2	0	genome.wustl.edu	37	9	96021357	96021357	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	9	96021357	96021357	C	G	SNP	WNK2	ENST00000297954	human	ensembl	74_37	+1	known	missense	c.2527	p.L843V	0.775	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK2	HGNC	ENSG00000165238	tier1	-	-	167	0	0.00	178	55	23.61	32	0	0.00	46	13	22.03
KAT7	0	genome.wustl.edu	37	17	47903406	47903406	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	17	47903406	47903406	C	T	SNP	KAT7	ENST00000259021	human	ensembl	74_37	+1	known	missense	c.1525	p.R509C	1.000	pfam_MOZ_SAS,superfamily_Acyl_CoA_acyltransferase	pfam_MOZ_SAS,pfam_Znf_C2HC,superfamily_Acyl_CoA_acyltransferase	-	no_errors	KAT7	HGNC	ENSG00000136504	tier1	-	-	110	1	0.90	37	22	37.29	34	0	0.00	22	6	21.43
MIP	0	genome.wustl.edu	37	12	56847521	56847521	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	12	56847521	56847521	C	T	SNP	MIP	ENST00000257979	human	ensembl	74_37	-1	known	missense	c.379	p.V127M	1.000	pfam_MIP,superfamily_Aquaporin-like,tigrfam_MIP	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,tigrfam_MIP	-	no_errors	MIP	HGNC	ENSG00000135517	tier1	-	-	23	0	0.00	12	6	33.33	43	0	0.00	52	17	24.64
ZNF592	0	genome.wustl.edu	37	15	85327615	85327615	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	15	85327615	85327615	C	T	SNP	ZNF592	ENST00000299927	human	ensembl	74_37	+1	known	missense	c.1709	p.P570L	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF592	HGNC	ENSG00000166716	tier1	-	-	52	0	0.00	44	16	26.23	110	1	0.90	105	27	20.30
CPZ	0	genome.wustl.edu	37	4	8609140	8609140	+	Silent	SNP	G	G	A			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	4	8609140	8609140	G	A	SNP	CPZ	ENST00000360986	human	ensembl	74_37	+1	known	silent	c.1215	p.T405	0.006	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Frizzled_dom,superfamily_Frizzled_dom,superfamily_CarboxyPept-like_regulatory,smart_Frizzled_dom,smart_Peptidase_M14,prints_Peptidase_M14,pfscan_Frizzled_dom	-	no_errors	CPZ	HGNC	ENSG00000109625	tier1	-	-	55	0	0.00	26	16	37.21	94	0	0.00	65	35	34.65
LINC00473	0	genome.wustl.edu	37	6	166401082	166401082	+	R	SNP	A	A	T			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	6	166401082	166401082	A	T	SNP	LINC00473	ENST00000444465	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LINC00473	HGNC	ENSG00000223414	tier1	-	-	25	0	0.00	15	8	34.78	29	0	0.00	23	13	36.11
CHD1	0	genome.wustl.edu	37	5	98236658	98236658	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	5	98236658	98236658	T	A	SNP	CHD1	ENST00000284049	human	ensembl	74_37	-1	known	missense	c.716	p.N239I	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD1	HGNC	ENSG00000153922	tier1	-	-	39	0	0.00	26	5	16.13	103	0	0.00	70	42	37.50
SEMA5A	0	genome.wustl.edu	37	5	9063189	9063189	+	Silent	SNP	C	C	A			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	5	9063189	9063189	C	A	SNP	SEMA5A	ENST00000382496	human	ensembl	74_37	-1	known	silent	c.2328	p.G776	0.014	NULL	pfam_Semap_dom,pfam_Thrombospondin_1_rpt,superfamily_Semap_dom,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Thrombospondin_1_rpt,pfscan_Semap_dom,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5A	HGNC	ENSG00000112902	tier1	rs142331748	-	27	0	0.00	33	8	19.51	132	0	0.00	136	27	16.56
CAB39L	0	genome.wustl.edu	37	13	49925039	49925039	+	Silent	SNP	G	G	A			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	13	49925039	49925039	G	A	SNP	CAB39L	ENST00000347776	human	ensembl	74_37	-1	known	silent	c.405	p.A135	1.000	pfam_Mo25,superfamily_ARM-type_fold	pfam_Mo25,superfamily_ARM-type_fold	-	no_errors	CAB39L	HGNC	ENSG00000102547	tier1	-	-	56	0	0.00	28	11	27.50	162	0	0.00	100	36	26.47
LRRC69	0	genome.wustl.edu	37	8	92136873	92136873	+	R	SNP	T	T	G			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	8	92136873	92136873	T	G	SNP	LRRC69	ENST00000522144	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.003	-	-	-	no_errors	LRRC69	HGNC	ENSG00000214954	tier1	-	-	62	0	0.00	42	21	33.33	112	0	0.00	78	66	45.83
PRKACG	0	genome.wustl.edu	37	9	71628289	71628289	+	Silent	SNP	G	G	A			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	9	71628289	71628289	G	A	SNP	PRKACG	ENST00000377276	human	ensembl	74_37	-1	known	silent	c.720	p.Y240	0.998	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKACG	HGNC	ENSG00000165059	tier1	-	-	36	0	0.00	16	5	23.81	63	1	1.56	25	31	55.36
LCN	0	genome.wustl.edu	37	13	101936334	101936334	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	13	101936334	101936334	C	A	SNP	LCN	ENST00000251127	human	ensembl	74_37	-1	known	missense	c.1084	p.V362L	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	LCN	HGNC	ENSG00000102452	tier1	-	-	87	0	0.00	47	25	34.72	72	0	0.00	56	17	23.29
SCN8A	0	genome.wustl.edu	37	12	52145167	52145167	+	Silent	SNP	G	G	A			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	12	52145167	52145167	G	A	SNP	SCN8A	ENST00000354534	human	ensembl	74_37	+1	known	silent	c.2160	p.P720	0.002	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,prints_Na_channel_a8su,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN8A	HGNC	ENSG00000196876	tier1	-	-	67	0	0.00	35	9	20.45	72	0	0.00	69	22	24.18
TRIOBP	0	genome.wustl.edu	37	22	38120154	38120154	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	22	38120154	38120154	G	A	SNP	TRIOBP	ENST00000406386	human	ensembl	74_37	+1	known	missense	c.1591	p.A531T	0.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	TRIOBP	HGNC	ENSG00000100106	tier1	rs201112075	-	165	0	0.00	129	33	20.12	47	0	0.00	57	18	23.68
C2CD5	0	genome.wustl.edu	37	12	22670939	22670939	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	12	22670939	22670939	C	G	SNP	C2CD5	ENST00000333957	human	ensembl	74_37	-1	known	missense	c.933	p.L311F	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	C2CD5	HGNC	ENSG00000111731	tier1	-	-	61	0	0.00	19	13	40.62	106	0	0.00	41	31	43.06
DYNC1I1	0	genome.wustl.edu	37	7	95625320	95625320	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	7	95625320	95625320	G	C	SNP	DYNC1I1	ENST00000324972	human	ensembl	74_37	+1	known	missense	c.955	p.G319R	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_Dynein_IC_1/2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DYNC1I1	HGNC	ENSG00000158560	tier1	-	-	88	0	0.00	53	37	41.11	202	0	0.00	113	75	39.89
RHOT2	0	genome.wustl.edu	37	16	720824	720824	+	R	SNP	C	C	A			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	16	720824	720824	C	A	SNP	RHOT2	ENST00000569943	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RHOT2	HGNC	ENSG00000140983	tier1	-	-	147	0	0.00	82	45	35.43	56	0	0.00	36	17	32.08
SNORD109A	0	genome.wustl.edu	37	15	25287126	25287126	+	R	SNP	G	G	T			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	15	25287126	25287126	G	T	SNP	SNORD109A	ENST00000459128	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.983	-	-	-	no_errors	SNORD109A	HGNC	ENSG00000270246	tier1	-	-	98	0	0.00	43	18	29.51	112	0	0.00	53	16	23.19
DST	0	genome.wustl.edu	37	6	56489356	56489356	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	6	56489356	56489356	T	G	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	missense	c.4802	p.D1601A	1.000	superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914	tier1	-	-	32	0	0.00	19	8	29.63	107	0	0.00	89	24	21.24
PCLO	0	genome.wustl.edu	37	7	82544714	82544714	+	Silent	SNP	A	A	G			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	7	82544714	82544714	A	G	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	silent	c.12588	p.I4196	1.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	tier1	-	-	46	0	0.00	47	7	12.96	127	0	0.00	135	20	12.90
DYNC1H1	0	genome.wustl.edu	37	14	102505858	102505858	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	14	102505858	102505858	C	G	SNP	DYNC1H1	ENST00000360184	human	ensembl	74_37	+1	known	missense	c.11570	p.S3857C	0.902	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102	tier1	-	-	33	0	0.00	19	13	40.62	112	0	0.00	90	28	23.73
SRPX2	0	genome.wustl.edu	37	X	99905881	99905881	+	R	SNP	C	C	G			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	X	99905881	99905881	C	G	SNP	SRPX2	ENST00000481988	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SRPX2	HGNC	ENSG00000102359	tier1	-	-	23	0	0.00	17	5	21.74	48	0	0.00	49	24	32.88
CLDN10	0	genome.wustl.edu	37	13	96212707	96212707	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	13	96212707	96212707	G	A	SNP	CLDN10	ENST00000299339	human	ensembl	74_37	+1	known	missense	c.454	p.V152I	0.700	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin10,prints_Claudin	-	no_errors	CLDN10	HGNC	ENSG00000134873	tier1	-	-	39	0	0.00	33	18	35.29	146	0	0.00	53	38	41.76
CDH11	0	genome.wustl.edu	37	16	65016106	65016106	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	16	65016106	65016106	G	T	SNP	CDH11	ENST00000268603	human	ensembl	74_37	-1	known	missense	c.1098	p.D366E	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH11	HGNC	ENSG00000140937	tier1	-	-	103	0	0.00	40	18	31.03	131	0	0.00	51	33	39.29
DYNC1H1	0	genome.wustl.edu	37	14	102505775	102505775	+	Silent	SNP	C	C	G			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	14	102505775	102505775	C	G	SNP	DYNC1H1	ENST00000360184	human	ensembl	74_37	+1	known	silent	c.11487	p.L3829	0.620	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102	tier1	-	-	61	0	0.00	48	14	22.58	120	0	0.00	126	28	18.18
PCDHA8	0	genome.wustl.edu	37	5	140222280	140222280	+	Silent	SNP	C	C	T			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	5	140222280	140222280	C	T	SNP	PCDHA8	ENST00000531613	human	ensembl	74_37	+1	known	silent	c.1374	p.P458	0.001	superfamily_Cadherin-like,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA8	HGNC	ENSG00000204962	tier1	-	-	103	0	0.00	136	33	19.41	38	0	0.00	27	9	25.00
CHST11	0	genome.wustl.edu	37	12	105151192	105151192	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	12	105151192	105151192	G	A	SNP	CHST11	ENST00000303694	human	ensembl	74_37	+1	known	missense	c.670	p.A224T	1.000	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	CHST11	HGNC	ENSG00000171310	tier1	-	-	54	0	0.00	76	8	9.52	47	0	0.00	116	24	17.14
BLNK	0	genome.wustl.edu	37	10	98031113	98031113	+	Silent	SNP	A	A	G			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	10	98031113	98031113	A	G	SNP	BLNK	ENST00000224337	human	ensembl	74_37	-1	known	silent	c.43	p.L15	0.987	NULL	pfam_SH2,smart_SH2,pfscan_SH2	-	no_errors	BLNK	HGNC	ENSG00000095585	tier1	-	-	77	0	0.00	34	13	27.08	125	0	0.00	59	20	25.32
IQCG	0	genome.wustl.edu	37	3	197639636	197639636	+	R	SNP	G	G	T			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	3	197639636	197639636	G	T	SNP	IQCG	ENST00000469822	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	IQCG	HGNC	ENSG00000114473	tier1	-	-	71	0	0.00	40	16	28.57	101	0	0.00	48	22	31.43
EVI2A	0	genome.wustl.edu	37	17	29645499	29645499	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	17	29645499	29645499	C	G	SNP	EVI2A	ENST00000247270	human	ensembl	74_37	-1	known	missense	c.602	p.R201T	1.000	pfam_Ectropic_vir_integratn_site_2A,pirsf_Ectropic_vir_integratn_site_2A	pfam_Ectropic_vir_integratn_site_2A,pirsf_Ectropic_vir_integratn_site_2A	-	no_errors	EVI2A	HGNC	ENSG00000126860	tier1	-	-	37	0	0.00	27	17	38.64	88	0	0.00	54	25	31.65
DYNC1H1	0	genome.wustl.edu	37	14	102504807	102504807	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	14	102504807	102504807	G	C	SNP	DYNC1H1	ENST00000360184	human	ensembl	74_37	+1	known	missense	c.10919	p.S3640T	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102	tier1	-	-	49	0	0.00	42	12	22.22	140	0	0.00	114	33	22.45
DYNC1H1	0	genome.wustl.edu	37	14	102505585	102505585	+	Silent	SNP	C	C	G			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	14	102505585	102505585	C	G	SNP	DYNC1H1	ENST00000360184	human	ensembl	74_37	+1	known	silent	c.11454	p.L3818	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102	tier1	-	-	90	0	0.00	58	19	24.68	32	0	0.00	38	21	35.59
OR52A5	0	genome.wustl.edu	37	11	5153475	5153475	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	11	5153475	5153475	C	T	SNP	OR52A5	ENST00000307388	human	ensembl	74_37	-1	known	missense	c.398	p.R133K	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52A5	HGNC	ENSG00000171944	tier1	-	-	48	0	0.00	26	8	23.53	125	1	0.79	56	26	31.71
KRTAP13-3	0	genome.wustl.edu	37	21	31797893	31797893	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	21	31797893	31797893	C	T	SNP	KRTAP13-3	ENST00000390690	human	ensembl	74_37	-1	known	missense	c.338	p.G113E	0.026	pfam_KRTAP_PMG	pfam_KRTAP_PMG	-	no_errors	KRTAP13-3	HGNC	ENSG00000240432	tier1	-	-	34	0	0.00	15	12	44.44	71	0	0.00	32	9	21.95
PIK3CA	0	genome.wustl.edu	37	3	178936094	178936094	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	3	178936094	178936094	C	A	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	missense	c.1636	p.Q546K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	tier1	rs121913286	-	55	0	0.00	35	18	33.96	120	0	0.00	39	15	27.78
SCN2A	0	genome.wustl.edu	37	2	166188073	166188073	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	2	166188073	166188073	A	T	SNP	SCN2A	ENST00000283256	human	ensembl	74_37	+1	known	missense	c.2383	p.N795Y	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531	tier1	-	-	57	0	0.00	26	11	29.73	140	0	0.00	61	36	37.11
VN1R4	0	genome.wustl.edu	37	19	53770511	53770511	+	Silent	SNP	G	G	T			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	19	53770511	53770511	G	T	SNP	VN1R4	ENST00000311170	human	ensembl	74_37	-1	known	silent	c.408	p.I136	0.003	pfam_Vmron_rcpt_1,pfam_TAS2_rcpt,pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_Vmron_rcpt_1,pfam_TAS2_rcpt,pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Vmron_rcpt_1	-	no_errors	VN1R4	HGNC	ENSG00000228567	tier1	-	-	133	0	0.00	140	40	22.22	73	0	0.00	93	23	19.83
WDR7	0	genome.wustl.edu	37	18	54424260	54424260	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	18	54424260	54424260	G	C	SNP	WDR7	ENST00000254442	human	ensembl	74_37	+1	known	missense	c.2436	p.L812F	1.000	NULL	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR7	HGNC	ENSG00000091157	tier1	-	-	65	0	0.00	27	6	18.18	129	0	0.00	63	28	30.77
CCDC103	0	genome.wustl.edu	37	17	42978925	42978925	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	17	42978925	42978925	C	T	SNP	CCDC103	ENST00000410006	human	ensembl	74_37	+1	known	missense	c.181	p.R61W	0.742	NULL	NULL	-	no_errors	CCDC103	HGNC	ENSG00000167131	tier1	-	-	67	0	0.00	22	9	29.03	127	0	0.00	53	32	37.65
KIAA1109	0	genome.wustl.edu	37	4	123150375	123150375	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	4	123150375	123150375	G	C	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	missense	c.3022	p.G1008R	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688	tier1	-	-	65	0	0.00	32	14	30.43	162	0	0.00	61	29	32.22
SPTA1	0	genome.wustl.edu	37	1	158648297	158648297	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	1	158648297	158648297	G	C	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	missense	c.706	p.Q236E	0.011	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	tier1	-	-	67	0	0.00	32	13	28.26	88	0	0.00	29	14	32.56
PMEL	0	genome.wustl.edu	37	12	56355132	56355132	+	Silent	SNP	C	C	T			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	12	56355132	56355132	C	T	SNP	PMEL	ENST00000360714	human	ensembl	74_37	-1	known	silent	c.303	p.Q101	0.999	NULL	pfam_PKD_dom,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_PKD_dom	-	no_errors	PMEL	HGNC	ENSG00000185664	tier1	-	-	27	0	0.00	35	8	18.60	114	0	0.00	97	31	24.22
KIR3DX1	0	genome.wustl.edu	37	19	55045167	55045167	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	19	55045167	55045167	G	A	SNP	KIR3DX1	ENST00000335056	human	ensembl	74_37	+1	known	missense	c.287	p.G96E	0.001	smart_Ig_sub	pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	KIR3DX1	HGNC	ENSG00000104970	tier1	-	-	77	0	0.00	77	18	18.95	86	0	0.00	79	23	22.55
AXL	0	genome.wustl.edu	37	19	41748828	41748828	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	19	41748828	41748828	G	C	SNP	AXL	ENST00000301178	human	ensembl	74_37	+1	known	missense	c.1353	p.W451C	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	AXL	HGNC	ENSG00000167601	tier1	-	-	41	0	0.00	45	12	21.05	120	0	0.00	130	24	15.58
ZNF398	0	genome.wustl.edu	37	7	148851394	148851394	+	Silent	SNP	C	C	T			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	7	148851394	148851394	C	T	SNP	ZNF398	ENST00000540950	human	ensembl	74_37	+1	known	silent	c.397	p.L133	1.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF398	HGNC	ENSG00000197024	tier1	-	-	87	0	0.00	36	17	32.08	79	0	0.00	48	23	32.39
KIR3DX1	0	genome.wustl.edu	37	19	55054687	55054687	+	R	SNP	C	C	A			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	19	55054687	55054687	C	A	SNP	KIR3DX1	ENST00000482404	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	KIR3DX1	HGNC	ENSG00000104970	tier1	-	-	72	0	0.00	77	18	18.95	119	0	0.00	163	22	11.89
CCDC60	0	genome.wustl.edu	37	12	119943003	119943003	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	12	119943003	119943003	G	A	SNP	CCDC60	ENST00000327554	human	ensembl	74_37	+1	known	missense	c.778	p.G260S	0.246	NULL	NULL	-	no_errors	CCDC60	HGNC	ENSG00000183273	tier1	-	-	57	0	0.00	68	14	17.07	70	0	0.00	113	13	10.24
IFT52	0	genome.wustl.edu	37	20	42275584	42275584	+	Silent	SNP	C	C	T			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	20	42275584	42275584	C	T	SNP	IFT52	ENST00000373030	human	ensembl	74_37	+1	known	silent	c.1275	p.D425	0.349	NULL	pfam_ABC_transp_unknown	-	no_errors	IFT52	HGNC	ENSG00000101052	tier1	-	-	81	0	0.00	60	22	26.83	112	0	0.00	97	26	20.80
LRRC16B	0	genome.wustl.edu	37	14	24538444	24538444	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	14	24538444	24538444	C	T	SNP	LRRC16B	ENST00000342740	human	ensembl	74_37	+1	known	missense	c.4081	p.P1361S	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16B	HGNC	ENSG00000186648	tier1	-	-	31	0	0.00	21	16	43.24	37	0	0.00	19	10	34.48
DCC	0	genome.wustl.edu	37	18	51056781	51056781	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	18	51056781	51056781	C	T	SNP	DCC	ENST00000581580	human	ensembl	74_37	+1	putative	missense	c.3218	p.S1073L	0.080	NULL	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DCC	HGNC	ENSG00000187323	tier1	-	-	68	0	0.00	30	10	25.00	95	0	0.00	58	29	33.33
KAT7	0	genome.wustl.edu	37	17	47903425	47903426	+	Frame_Shift_Ins	INS	-	-	GC			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	-	-	-	GC	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	17	47903425	47903426	-	GC	INS	KAT7	ENST00000259021	human	ensembl	74_37	+1	known	frame_shift_ins	c.1544_1545	p.L516fs	1.000:0.989	pfam_MOZ_SAS,superfamily_Acyl_CoA_acyltransferase	pfam_MOZ_SAS,pfam_Znf_C2HC,superfamily_Acyl_CoA_acyltransferase	-	no_errors	KAT7	HGNC	ENSG00000136504	tier1			108	0	0.00	35	27	43.55	42	0	0.00	18	17	48.57
KDM5A	0	genome.wustl.edu	37	12	464396	464397	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	TC	TC	TC	-	TC	TC	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	12	464396	464397	TC	-	DEL	KDM5A	ENST00000399788	human	ensembl	74_37	-1	known	frame_shift_del	c.798_797	p.R266fs	1.000:1.000	NULL	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_D-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_D-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_D-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_D-bd	-	no_errors	KDM5A	HGNC	ENSG00000073614	tier1			47	0	0.00	26	8	23.53	160	0	0.00	62	24	27.91
DDX5	0	genome.wustl.edu	37	17	62500099	62500102	+	Frame_Shift_Del	DEL	ACAG	ACAG	-			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	ACAG	ACAG	ACAG	-	ACAG	ACAG	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	17	62500099	62500102	ACAG	-	DEL	DDX5	ENST00000225792	human	ensembl	74_37	-1	known	frame_shift_del	c.443_440	p.S147fs	1.000:1.000:1.000:1.000	pfam_D/R_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_D/R_helicase_DEAD/DEAH_N,pfam_P68HR,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_R_helicase_DEAD_Q_motif	-	no_errors	DDX5	HGNC	ENSG00000108654	tier1			30	0	0.00	15	8	34.78	104	0	0.00	58	21	26.58
ALLC	0	genome.wustl.edu	37	2	3750075	3750075	+	Silent	SNP	C	C	T			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	2	3750075	3750075	C	T	SNP	ALLC	ENST00000252505	human	ensembl	74_37	+1	known	silent	c.1098	p.F366	0.993	superfamily_Galactose-bd-like	pfam_Allantoicase_dom,superfamily_Galactose-bd-like,tigrfam_Allantoicase	-	no_errors	ALLC	HGNC	ENSG00000151360	tier1	-	-	19	0	0.00	12	5	29.41	12	0	0.00	7	2	22.22
C16orf86	0	genome.wustl.edu	37	16	67700794	67700794	+	R	SNP	G	G	A			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	16	67700794	67700794	G	A	SNP	C16orf86	ENST00000602974	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C16orf86	HGNC	ENSG00000159761	tier1	-	-	8	0	0.00	16	11	40.74	9	0	0.00	3	2	40.00
MISP	0	genome.wustl.edu	37	19	758081	758081	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	19	758081	758081	G	A	SNP	MISP	ENST00000215582	human	ensembl	74_37	+1	known	missense	c.1135	p.D379N	0.000	NULL	NULL	-	no_errors	MISP	HGNC	ENSG00000099812	tier1	-	-	37	0	0.00	33	10	23.26	12	0	0.00	8	7	46.67
NXN	0	genome.wustl.edu	37	17	708474	708474	+	Silent	SNP	G	G	A			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	17	708474	708474	G	A	SNP	NXN	ENST00000336868	human	ensembl	74_37	-1	known	silent	c.834	p.L278	1.000	pfam_AhpC/TSA,pfam_Redoxin,superfamily_Thioredoxin-like_fold	pfam_AhpC/TSA,pfam_Redoxin,superfamily_Thioredoxin-like_fold	-	no_errors	NXN	HGNC	ENSG00000167693	tier1	rs193165884	GMAF=0.0005	113	0	0.00	101	83	44.86	10	0	0.00	9	11	55.00
ARMC10	0	genome.wustl.edu	37	7	102738973	102738973	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	7	102738973	102738973	G	T	SNP	ARMC10	ENST00000323716	human	ensembl	74_37	+1	known	missense	c.1005	p.K335N	0.996	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	ARMC10	HGNC	ENSG00000170632	tier1	-	-	127	0	0.00	69	13	15.85	107	0	0.00	80	7	8.05
ENSG00000253334	0	genome.wustl.edu	37	8	82727640	82727641	+	R	INS	-	-	A			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	8	82727640	82727641	-	A	INS	ENSG00000253334	ENST00000524337	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.496	-	-	-	no_errors	RP13-923O23.6	Clone_based_vega_gene	ENSG00000253334	tier1			20	0	0.00	34	4	10.53	115	1	0.86	122	5	3.94
HOOK3	0	genome.wustl.edu	37	8	42873625	42873625	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	8	42873625	42873625	C	T	SNP	HOOK3	ENST00000307602	human	ensembl	74_37	+1	known	missense	c.2141	p.P714L	1.000	pfam_Hook-related_fam	pfam_Hook-related_fam,superfamily_t-SRE	-	no_errors	HOOK3	HGNC	ENSG00000168172	tier1	-	-	43	0	0.00	27	18	40.00	48	1	2.04	33	26	43.33
OR2B11	0	genome.wustl.edu	37	1	247614903	247614903	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	1	247614903	247614903	C	T	SNP	OR2B11	ENST00000318749	human	ensembl	74_37	-1	known	missense	c.382	p.V128M	0.666	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2B11	HGNC	ENSG00000177535	tier1	-	-	32	0	0.00	14	9	39.13	47	1	2.08	21	8	27.59
PYROXD1	0	genome.wustl.edu	37	12	21590706	21590715	+	Frame_Shift_Del	DEL	GGTGGTCGGC	GGTGGTCGGC	-			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	GGTGGTCGGC	GGTGGTCGGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	12	21590706	21590715	GGTGGTCGGC	-	DEL	PYROXD1	ENST00000240651	human	ensembl	74_37	+1	known	frame_shift_del	c.42_51	p.V15fs	1.000:1.000:1.000:1.000:1.000:0.995:0.789:0.996:0.998:0.978	pfam_Pyr_nucl-diS_OxRdtase_FAD/D,prints_FAD_pyr_nucl-diS_OxRdtase	pfam_Pyr_nucl-diS_OxRdtase_FAD/D,prints_FAD_pyr_nucl-diS_OxRdtase	-	no_errors	PYROXD1	HGNC	ENSG00000121350	tier1			6	0	0.00	0	0	0.00	6	0	0.00	0	0	0.00
SSPO	0	genome.wustl.edu	37	7	149509072	149509072	+	R	SNP	G	G	A			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	7	149509072	149509072	G	A	SNP	SSPO	ENST00000378016	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558	tier1	-	-	32	0	0.00	32	4	11.11	18	0	0.00	7	0	0.00
YWHAE	0	genome.wustl.edu	37	17	1265304	1265305	+	Splice_Site	INS	-	-	A			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	17	1265304	1265305	-	A	INS	YWHAE	ENST00000264335	human	ensembl	74_37	-1	known	splice_site_ins	c.265-3_265-2	e3-2	1.000:0.895	-	-	-	no_errors	YWHAE	HGNC	ENSG00000108953	tier1			35	0	0.00	40	5	11.11	8	0	0.00	7	0	0.00
AGPS	0	genome.wustl.edu	37	2	178257538	178257538	+	Silent	SNP	A	A	G			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	2	178257538	178257538	A	G	SNP	AGPS	ENST00000264167	human	ensembl	74_37	+1	known	silent	c.21	p.A7	0.895	NULL	pfam_FAD-linked_oxidase_C,pfam_Oxid_FAD_bind_N,superfamily_FAD-bd_2,superfamily_FAD-linked_Oxase-like_C	-	no_errors	AGPS	HGNC	ENSG00000018510	tier1	-	-	27	0	0.00	23	5	17.86	3	0	0.00	5	0	0.00
GRAMD1A	0	genome.wustl.edu	37	19	35491326	35491327	+	R	INS	-	-	GCCCT			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	19	35491326	35491327	-	GCCCT	INS	GRAMD1A	ENST00000603669	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.780:0.776	-	-	-	no_errors	GRAMD1A	HGNC	ENSG00000089351	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
IL17B	0	genome.wustl.edu	37	5	148753976	148753976	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	5	148753976	148753976	C	T	SNP	IL17B	ENST00000261796	human	ensembl	74_37	-1	known	missense	c.499	p.A167T	0.002	pfam_IL-17_fam,prints_IL-17_chr	pfam_IL-17_fam,prints_IL-17_chr	-	no_errors	IL17B	HGNC	ENSG00000127743	tier1	-	-	28	0	0.00	33	16	32.65	4	0	0.00	4	0	0.00
MMP17	0	genome.wustl.edu	37	12	132313098	132313099	+	In_Frame_Ins	INS	-	-	GCTGCCGCT			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	12	132313098	132313099	-	GCTGCCGCT	INS	MMP17	ENST00000360564	human	ensembl	74_37	+1	known	in_frame_ins	c.59_60	p.24in_frame_insLPL	0.023:0.052	pirsf_Pept_M10A_Metazoans	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,pirsf_Pept_M10A_Metazoans,prints_Pept_M10A	-	no_errors	MMP17	HGNC	ENSG00000198598	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
MT-CO2	0	genome.wustl.edu	37	MT	7988	7988	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	MT	7988	7988	C	T	SNP	MT-CO2	ENST00000361739	human	ensembl	74_37	+1	known	missense	c.403	p.L135F	NULL	pfam_Cyt_c_oxidase_su2_C,superfamily_Cupredoxin,pfscan_Cyt_c_oxidase_su2_C,tigrfam_Cyt_c_oxidase_su2	pfam_Cyt_c_oxidase_su2_C,pfam_Cyt_c_oxidase_su2_TM_dom,superfamily_Cupredoxin,superfamily_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_C,tigrfam_Cyt_c_oxidase_su2	-	no_errors	MT-CO2	HGNC	ENSG00000198712	tier1	-	-	252	0	0.00	55	122	68.93	0	0	0.00	0	0	0.00
TBX3	0	genome.wustl.edu	37	12	115109883	115109883	+	Silent	SNP	C	C	T			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	12	115109883	115109883	C	T	SNP	TBX3	ENST00000257566	human	ensembl	74_37	-1	known	silent	c.1995	p.A665	0.509	NULL	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_D-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	tier1	-	-	33	0	0.00	37	6	13.95	4	0	0.00	2	1	33.33
LOC100190940	0	genome.wustl.edu	37	12	130521234	130521235	+	R	INS	-	-	AAA			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	12	130521234	130521235	-	AAA	INS	LOC100190940	ENST00000291374	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.029:0.046	-	-	-	no_errors	RP11-474D1.3	Clone_based_vega_gene	ENSG00000214039	tier1			9	0	0.00	23	13	36.11	3	0	0.00	8	3	27.27
SS1	0	genome.wustl.edu	37	9	140083505	140083505	+	R	SNP	T	T	G			TCGA-DX-A8BX-01A-11D-A37C-09	TCGA-DX-A8BX-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c6670f59-bd1e-4405-98f5-351e9e4ddf11	fc8335fb-7cb7-4553-8701-b16e1bfc3a14	9	140083505	140083505	T	G	SNP	SS1	ENST00000459860	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SS1	HGNC	ENSG00000176101	tier1	-	-	31	0	0.00	35	11	23.91	2	0	0.00	8	4	33.33
