Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
ELL2	0	genome.wustl.edu	37	5	95236750	95236750	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	5	95236750	95236750	G	A	SNP	ELL2	ENST00000237853	human	ensembl	74_37	-1	known	missense	c.776	p.T259I	1.000	pfam_R_pol_II_elong_fac_ELL	pfam_R_pol_II_elong_fac_ELL,pfam_Occludin_Rpol2_elong_fac_ELL	-	no_errors	ELL2	HGNC	ENSG00000118985	tier1	-	-	43	0	0.00	29	25	46.30	94	0	0.00	57	31	34.83
HCN1	0	genome.wustl.edu	37	5	45695937	45695937	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	5	45695937	45695937	G	A	SNP	HCN1	ENST00000303230	human	ensembl	74_37	-1	known	missense	c.259	p.P87S	1.000	NULL	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN1	HGNC	ENSG00000164588	tier1	-	-	37	0	0.00	25	12	31.58	31	0	0.00	13	7	35.00
KIAA1217	0	genome.wustl.edu	37	10	24832973	24832973	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	10	24832973	24832973	G	A	SNP	KIAA1217	ENST00000376454	human	ensembl	74_37	+1	known	missense	c.4774	p.G1592R	1.000	NULL	pfam_AIP3_C	-	no_errors	KIAA1217	HGNC	ENSG00000120549	tier1	-	-	66	0	0.00	74	41	35.65	115	0	0.00	100	52	34.21
TCHHL1	0	genome.wustl.edu	37	1	152057988	152057988	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	1	152057988	152057988	G	T	SNP	TCHHL1	ENST00000368806	human	ensembl	74_37	-1	known	missense	c.2170	p.L724I	0.000	NULL	pfam_S100_Ca-bd_sub	-	no_errors	TCHHL1	HGNC	ENSG00000182898	tier1	-	-	33	0	0.00	28	24	46.15	112	0	0.00	102	42	29.17
FBXO5	0	genome.wustl.edu	37	6	153292351	153292351	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	6	153292351	153292351	T	C	SNP	FBXO5	ENST00000229758	human	ensembl	74_37	-1	known	missense	c.1291	p.I431V	0.304	NULL	pfam_F-box_dom,superfamily_F-box_dom	-	no_errors	FBXO5	HGNC	ENSG00000112029	tier1	-	-	83	0	0.00	317	33	9.43	92	0	0.00	236	38	13.82
PEG3	0	genome.wustl.edu	37	19	57336013	57336013	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	19	57336013	57336013	G	A	SNP	PEG3	ENST00000326441	human	ensembl	74_37	-1	known	missense	c.11	p.P4L	0.932	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300	tier1	-	-	36	0	0.00	43	12	21.82	141	0	0.00	101	59	36.88
PTCHD2	0	genome.wustl.edu	37	1	11595642	11595642	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	1	11595642	11595642	G	A	SNP	PTCHD2	ENST00000294484	human	ensembl	74_37	+1	known	missense	c.3757	p.V1253I	1.000	pfam_Patched,pfam_MMPL_dom	pfam_Patched,pfam_MMPL_dom,pfscan_SSD	-	no_errors	PTCHD2	HGNC	ENSG00000204624	tier1	rs200620988	-	87	0	0.00	57	31	35.23	46	0	0.00	19	11	36.67
SDR39U1	0	genome.wustl.edu	37	14	24911572	24911572	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	14	24911572	24911572	C	T	SNP	SDR39U1	ENST00000399395	human	ensembl	74_37	-1	known	missense	c.103	p.G35R	0.697	pfam_Epimerase_deHydtase,tigrfam_Sugar_nucleotide_Epase_put	pfam_DUF1731_C,pfam_Epimerase_deHydtase,tigrfam_Sugar_nucleotide_Epase_put	-	no_errors	SDR39U1	HGNC	ENSG00000100445	tier1	-	-	74	0	0.00	73	29	28.43	71	0	0.00	36	21	36.84
PRKCB	0	genome.wustl.edu	37	16	24192129	24192129	+	Silent	SNP	C	C	T			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	16	24192129	24192129	C	T	SNP	PRKCB	ENST00000303531	human	ensembl	74_37	+1	known	silent	c.1413	p.N471	0.577	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Protein_kinase_C_a/b/g,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd,prints_C2_dom	-	no_errors	PRKCB	HGNC	ENSG00000166501	tier1	-	-	56	0	0.00	67	30	30.93	109	0	0.00	74	27	26.73
MPO	0	genome.wustl.edu	37	17	56348017	56348017	+	Nonstop_Mutation	SNP	C	C	A			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	17	56348017	56348017	C	A	SNP	MPO	ENST00000340482	human	ensembl	74_37	-1	known	nonstop	c.2334	p.*778Y	0.724	NULL	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	MPO	HGNC	ENSG00000005381	tier1	-	-	26	0	0.00	22	13	37.14	88	0	0.00	71	43	37.72
DH9	0	genome.wustl.edu	37	17	11725755	11725755	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	17	11725755	11725755	G	T	SNP	DH9	ENST00000262442	human	ensembl	74_37	+1	known	missense	c.8851	p.V2951L	1.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DH9	HGNC	ENSG00000007174	tier1	-	-	39	0	0.00	36	22	37.93	95	0	0.00	70	35	33.33
GPRASP2	0	genome.wustl.edu	37	X	101970023	101970023	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	X	101970023	101970023	A	T	SNP	GPRASP2	ENST00000332262	human	ensembl	74_37	+1	known	missense	c.226	p.T76S	0.894	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP2	HGNC	ENSG00000158301	tier1	-	-	12	0	0.00	8	19	70.37	73	0	0.00	28	65	69.89
FOXS1	0	genome.wustl.edu	37	20	30432800	30432800	+	Silent	SNP	A	A	G			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	20	30432800	30432800	A	G	SNP	FOXS1	ENST00000375978	human	ensembl	74_37	-1	known	silent	c.546	p.T182	0.527	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXS1	HGNC	ENSG00000179772	tier1	-	-	51	0	0.00	45	15	25.00	41	0	0.00	36	10	21.74
DUSP27	0	genome.wustl.edu	37	1	167097263	167097263	+	Silent	SNP	G	G	T			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	1	167097263	167097263	G	T	SNP	DUSP27	ENST00000271385	human	ensembl	74_37	+1	known	silent	c.2895	p.S965	0.003	NULL	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP,prints_Atypical_DUSP_famA	-	no_errors	DUSP27	HGNC	ENSG00000198842	tier1	-	-	45	0	0.00	50	24	32.43	129	0	0.00	96	35	26.72
THBS3	0	genome.wustl.edu	37	1	155176138	155176138	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	1	155176138	155176138	G	A	SNP	THBS3	ENST00000368378	human	ensembl	74_37	-1	known	missense	c.139	p.R47W	1.000	smart_Laminin_G	pfam_Thrombospondin_C,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	THBS3	HGNC	ENSG00000169231	tier1	-	-	25	0	0.00	25	17	40.48	90	0	0.00	55	20	26.32
GRIN2A	0	genome.wustl.edu	37	16	10273944	10273944	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	16	10273944	10273944	C	T	SNP	GRIN2A	ENST00000330684	human	ensembl	74_37	-1	known	missense	c.325	p.V109I	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2A	HGNC	ENSG00000183454	tier1	-	-	49	0	0.00	55	29	34.52	83	0	0.00	48	29	37.66
SELP	0	genome.wustl.edu	37	1	169586354	169586354	+	Silent	SNP	G	G	A			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	1	169586354	169586354	G	A	SNP	SELP	ENST00000263686	human	ensembl	74_37	-1	known	silent	c.393	p.C131	0.801	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_Sushi_SCR_CCP,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELP	HGNC	ENSG00000174175	tier1	-	-	76	0	0.00	70	33	32.04	99	0	0.00	101	47	31.76
CTBP2	0	genome.wustl.edu	37	10	126715438	126715438	+	Silent	SNP	C	C	A			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	10	126715438	126715438	C	A	SNP	CTBP2	ENST00000309035	human	ensembl	74_37	-1	known	silent	c.891	p.L297	1.000	NULL	pfam_D-isomer_2_OHA_DH_D-bd,pfam_D-isomer_2_OHA_DH_cat_dom	-	no_errors	CTBP2	HGNC	ENSG00000175029	tier1	-	-	19	0	0.00	8	7	46.67	42	0	0.00	24	15	38.46
HHLA1	0	genome.wustl.edu	37	8	133090154	133090154	+	Silent	SNP	C	C	T			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	8	133090154	133090154	C	T	SNP	HHLA1	ENST00000414222	human	ensembl	74_37	-1	known	silent	c.990	p.S330	0.000	NULL	NULL	-	no_errors	HHLA1	HGNC	ENSG00000132297	tier1	-	-	42	0	0.00	27	14	34.15	71	1	1.37	58	35	37.63
KIAA1456	0	genome.wustl.edu	37	8	12879396	12879396	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	8	12879396	12879396	T	C	SNP	KIAA1456	ENST00000524591	human	ensembl	74_37	+1	known	missense	c.1208	p.L403S	0.001	NULL	pfam_Methyltransf_11,pfam_Methyltransf_12,pfam_UbiE/COQ5_MeTrFase,pfam_Methyltransferase-rel	-	no_errors	KIAA1456	HGNC	ENSG00000250305	tier1	-	-	20	0	0.00	21	13	38.24	61	0	0.00	53	19	26.39
OR5J2	0	genome.wustl.edu	37	11	55944659	55944659	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	11	55944659	55944659	G	A	SNP	OR5J2	ENST00000312298	human	ensembl	74_37	+1	known	missense	c.566	p.C189Y	0.993	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	-	no_errors	OR5J2	HGNC	ENSG00000174957	tier1	-	-	51	0	0.00	32	21	39.62	30	0	0.00	39	15	27.78
TMEM178B	0	genome.wustl.edu	37	7	141170396	141170396	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	7	141170396	141170396	G	A	SNP	TMEM178B	ENST00000565468	human	ensembl	74_37	+1	putative	missense	c.695	p.R232H	1.000	NULL	NULL	-	no_errors	TMEM178B	HGNC	ENSG00000261115	tier1	-	-	28	0	0.00	50	13	20.63	79	0	0.00	55	22	28.57
MROH2B	0	genome.wustl.edu	37	5	41015559	41015559	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	5	41015559	41015559	C	T	SNP	MROH2B	ENST00000399564	human	ensembl	74_37	-1	known	missense	c.2906	p.R969K	0.817	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MROH2B	HGNC	ENSG00000171495	tier1	-	-	59	0	0.00	48	27	36.00	134	0	0.00	77	34	30.36
ZNF280A	0	genome.wustl.edu	37	22	22869108	22869108	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	22	22869108	22869108	G	C	SNP	ZNF280A	ENST00000302097	human	ensembl	74_37	-1	known	missense	c.847	p.Q283E	0.262	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF280A	HGNC	ENSG00000169548	tier1	-	-	91	0	0.00	60	18	23.08	45	0	0.00	37	7	15.91
ACSBG1	0	genome.wustl.edu	37	15	78500436	78500436	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	15	78500436	78500436	G	A	SNP	ACSBG1	ENST00000258873	human	ensembl	74_37	-1	known	missense	c.140	p.T47I	0.002	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSBG1	HGNC	ENSG00000103740	tier1	-	-	33	0	0.00	20	14	41.18	87	0	0.00	48	18	27.27
EPG5	0	genome.wustl.edu	37	18	43432446	43432446	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	18	43432446	43432446	C	G	SNP	EPG5	ENST00000282041	human	ensembl	74_37	-1	known	missense	c.7726	p.D2576H	1.000	NULL	NULL	-	no_errors	EPG5	HGNC	ENSG00000152223	tier1	-	-	68	0	0.00	158	49	23.56	164	0	0.00	199	86	30.07
KLF6	0	genome.wustl.edu	37	10	3824222	3824223	+	Frame_Shift_Ins	INS	-	-	A			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	10	3824222	3824223	-	A	INS	KLF6	ENST00000497571	human	ensembl	74_37	-1	known	frame_shift_ins	c.287_286	p.C96fs	0.628:0.578	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF6	HGNC	ENSG00000067082	tier1			34	0	0.00	27	22	44.90	86	0	0.00	83	22	20.95
KDM2A	0	genome.wustl.edu	37	11	67023822	67023823	+	R	INS	-	-	A			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	11	67023822	67023823	-	A	INS	KDM2A	ENST00000524657	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	KDM2A	HGNC	ENSG00000173120	tier1			22	0	0.00	29	6	17.14	18	0	0.00	23	3	11.54
NPTN	0	genome.wustl.edu	37	15	73858110	73858110	+	Splice_Site	DEL	C	C	-			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	15	73858110	73858110	C	-	DEL	NPTN	ENST00000545878	human	ensembl	74_37	-1	known	splice_site_del	c.1122+1	e7+1	0.000	-	-	-	no_errors	NPTN	HGNC	ENSG00000156642	tier1			48	0	0.00	45	25	35.71	136	0	0.00	78	30	27.78
KIAA1432	0	genome.wustl.edu	37	9	5774107	5774107	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	9	5774107	5774107	G	-	DEL	KIAA1432	ENST00000418622	human	ensembl	74_37	+1	known	frame_shift_del	c.3896	p.G1300fs	1.000	NULL	pfam_Ribosome_control_1,superfamily_WD40_repeat_dom	-	no_errors	KIAA1432	HGNC	ENSG00000107036	tier1			56	0	0.00	39	31	44.29	62	0	0.00	29	19	39.58
FHDC1	0	genome.wustl.edu	37	4	153897251	153897251	+	Silent	SNP	T	T	C			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	4	153897251	153897251	T	C	SNP	FHDC1	ENST00000260008	human	ensembl	74_37	+1	known	silent	c.2808	p.D936	0.000	NULL	pfam_FH2_Formin,smart_FH2_Formin	-	no_errors	FHDC1	HGNC	ENSG00000137460	tier1	-	-	52	0	0.00	19	7	26.92	28	0	0.00	9	4	30.77
ENSG00000272231	0	genome.wustl.edu	37	12	74293705	74293712	+	R	DEL	CACACACA	CACACACA	-			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	CACACACA	CACACACA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	12	74293705	74293712	CACACACA	-	DEL	ENSG00000272231	ENST00000606199	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.029:0.033:0.036:0.039:0.041:0.043:0.044:0.045	-	-	-	no_errors	AC136188.1	Clone_based_ensembl_gene	ENSG00000272231	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
FRG2B	0	genome.wustl.edu	37	10	135439803	135439803	+	Silent	SNP	C	C	T			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	10	135439803	135439803	C	T	SNP	FRG2B	ENST00000425520	human	ensembl	74_37	-1	known	silent	c.183	p.S61	0.213	NULL	NULL	-	no_errors	FRG2B	HGNC	ENSG00000225899	tier1	rs202189720	-	8	0	0.00	8	6	42.86	0	0	0.00	0	0	0.00
SPEG	0	genome.wustl.edu	37	2	220330658	220330661	+	R	DEL	TGCA	TGCA	-			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	TGCA	TGCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	2	220330658	220330661	TGCA	-	DEL	SPEG	ENST00000462545	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004:0.005:0.000:0.000	-	-	-	no_errors	SPEG	HGNC	ENSG00000072195	tier1			12	0	0.00	15	7	31.82	0	0	0.00	0	0	0.00
SRRM4	0	genome.wustl.edu	37	12	119594485	119594485	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	12	119594485	119594485	G	A	SNP	SRRM4	ENST00000267260	human	ensembl	74_37	+1	known	missense	c.1718	p.R573H	1.000	NULL	NULL	-	no_errors	SRRM4	HGNC	ENSG00000139767	tier1	-	-	15	0	0.00	20	17	45.95	0	0	0.00	0	0	0.00
TTC40	0	genome.wustl.edu	37	10	134660723	134660723	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	10	134660723	134660723	C	T	SNP	TTC40	ENST00000263170	human	ensembl	74_37	-1	known	missense	c.538	p.E180K	0.003	NULL	NULL	-	no_errors	TTC40	HGNC	ENSG00000171811	tier1	-	-	46	0	0.00	52	24	31.58	1	0	0.00	2	1	33.33
