Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
TMEM131	0	genome.wustl.edu	37	2	98408981	98408981	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	2	98408981	98408981	C	T	SNP	TMEM131	ENST00000186436	human	ensembl	74_37	-1	known	missense	c.4012	p.A1338T	0.078	NULL	pfam_DUF3651_TMEM131	-	no_errors	TMEM131	HGNC	ENSG00000075568	tier1	-	-	51	0	0.00	39	12	23.53	44	0	0.00	16	6	27.27
ATP8B1	0	genome.wustl.edu	37	18	55351329	55351329	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	18	55351329	55351329	T	G	SNP	ATP8B1	ENST00000283684	human	ensembl	74_37	-1	known	missense	c.1569	p.E523D	0.979	pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8B1	HGNC	ENSG00000081923	tier1	-	-	37	0	0.00	38	12	24.00	105	0	0.00	92	17	15.32
CLUL1	0	genome.wustl.edu	37	18	627423	627423	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	18	627423	627423	C	A	SNP	CLUL1	ENST00000338387	human	ensembl	74_37	+1	known	missense	c.750	p.N250K	0.026	pfam_Clusterin-like,smart_Clusterin_C	pfam_Clusterin-like,smart_Clusterin_N,smart_Clusterin_C	-	no_errors	CLUL1	HGNC	ENSG00000079101	tier1	-	-	41	0	0.00	33	8	19.51	146	0	0.00	78	17	17.89
GHSR	0	genome.wustl.edu	37	3	172165433	172165433	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	3	172165433	172165433	G	T	SNP	GHSR	ENST00000241256	human	ensembl	74_37	-1	known	missense	c.771	p.N257K	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GHS-R	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GHS-R,prints_GPCR_Rhodpsn	-	no_errors	GHSR	HGNC	ENSG00000121853	tier1	-	-	58	0	0.00	38	50	56.82	65	0	0.00	43	24	35.82
ZFYVE28	0	genome.wustl.edu	37	4	2307170	2307170	+	Silent	SNP	G	G	A			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	4	2307170	2307170	G	A	SNP	ZFYVE28	ENST00000290974	human	ensembl	74_37	-1	known	silent	c.897	p.D299	0.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE28	HGNC	ENSG00000159733	tier1	-	-	47	0	0.00	37	11	22.92	31	0	0.00	16	5	23.81
MED13L	0	genome.wustl.edu	37	12	116413410	116413410	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	12	116413410	116413410	G	C	SNP	MED13L	ENST00000281928	human	ensembl	74_37	-1	known	missense	c.5498	p.S1833C	1.000	pfam_Mediator_Med13	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13L	HGNC	ENSG00000123066	tier1	-	-	64	0	0.00	40	7	14.89	59	0	0.00	54	7	11.48
KLK4	0	genome.wustl.edu	37	19	51411893	51411893	+	Silent	SNP	C	C	T			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	19	51411893	51411893	C	T	SNP	KLK4	ENST00000324041	human	ensembl	74_37	-1	known	silent	c.417	p.S139	0.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK4	HGNC	ENSG00000167749	tier1	-	-	37	0	0.00	21	6	22.22	65	0	0.00	61	14	18.67
STXBP4	0	genome.wustl.edu	37	17	53237201	53237201	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	17	53237201	53237201	G	A	SNP	STXBP4	ENST00000376352	human	ensembl	74_37	+1	known	missense	c.1591	p.V531I	0.757	NULL	pfam_WW_dom,pfam_PDZ,superfamily_PDZ,superfamily_WW_dom,smart_PDZ,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom	-	no_errors	STXBP4	HGNC	ENSG00000166263	tier1	-	-	35	0	0.00	34	24	40.68	91	0	0.00	69	22	24.18
FAF1	0	genome.wustl.edu	37	1	51121153	51121153	+	Silent	SNP	T	T	C			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	1	51121153	51121153	T	C	SNP	FAF1	ENST00000371778	human	ensembl	74_37	-1	known	silent	c.705	p.Q235	0.998	NULL	pfam_UBX,superfamily_UBA-like,smart_UAS,smart_UBX,pfscan_UBX	-	no_errors	FAF1	HGNC	ENSG00000185104	tier1	-	-	69	0	0.00	53	24	31.17	130	0	0.00	86	43	33.33
ENSG00000211510	0	genome.wustl.edu	37	9	30774270	30774270	+	R	SNP	A	A	T			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	9	30774270	30774270	A	T	SNP	ENSG00000211510	ENST00000390176	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.928	-	-	-	no_errors	AL590726.1	Clone_based_ensembl_gene	ENSG00000211510	tier1	-	-	37	0	0.00	39	8	17.02	45	0	0.00	30	6	16.67
RELA	0	genome.wustl.edu	37	11	65425869	65425869	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	11	65425869	65425869	G	A	SNP	RELA	ENST00000406246	human	ensembl	74_37	-1	known	missense	c.766	p.P256S	1.000	superfamily_Ig_E-set,smart_IPT,prints_NF_Rel_Dor	pfam_RHD,superfamily_p53-like_TF_D-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NF_Rel_Dor	-	no_errors	RELA	HGNC	ENSG00000173039	tier1	-	-	51	0	0.00	45	11	19.30	43	0	0.00	28	11	28.21
PRNP	0	genome.wustl.edu	37	20	4680309	4680309	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	20	4680309	4680309	G	A	SNP	PRNP	ENST00000379440	human	ensembl	74_37	+1	known	missense	c.443	p.R148H	1.000	pfam_Prion/Doppel_prot_b-ribbon_dom,superfamily_Prion/Doppel_prot_b-ribbon_dom,smart_Prion,prints_Prion	pfam_Prion/Doppel_prot_b-ribbon_dom,pfam_Prion_N_dom,superfamily_Prion/Doppel_prot_b-ribbon_dom,smart_Prion,prints_Prion	-	no_errors	PRNP	HGNC	ENSG00000171867	tier1	rs181348299	GMAF=0.0005	41	0	0.00	33	4	10.81	105	0	0.00	79	12	13.19
LOC100505635	0	genome.wustl.edu	37	6	39865095	39865095	+	R	SNP	T	T	C			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	6	39865095	39865095	T	C	SNP	LOC100505635	ENST00000420293	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-61I13.3	Clone_based_vega_gene	ENSG00000235033	tier1	-	-	82	0	0.00	60	18	23.08	146	0	0.00	86	34	28.33
KIF22	0	genome.wustl.edu	37	16	29816457	29816457	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	16	29816457	29816457	G	A	SNP	KIF22	ENST00000160827	human	ensembl	74_37	+1	known	missense	c.1912	p.E638K	1.000	superfamily_RuvA_2-like,smart_Hlx-hairpin-Hlx_D-bd_motif	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,superfamily_RuvA_2-like,smart_Kinesin_motor_dom,smart_Hlx-hairpin-Hlx_D-bd_motif,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF22	HGNC	ENSG00000079616	tier1	-	-	50	0	0.00	46	6	11.54	96	0	0.00	51	7	12.07
MKI67	0	genome.wustl.edu	37	10	129903472	129903472	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	10	129903472	129903472	G	C	SNP	MKI67	ENST00000368654	human	ensembl	74_37	-1	known	missense	c.6632	p.T2211R	0.000	NULL	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773	tier1	-	-	104	0	0.00	96	16	14.29	31	0	0.00	11	2	15.38
ZNF225	0	genome.wustl.edu	37	19	44635365	44635365	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	19	44635365	44635365	G	T	SNP	ZNF225	ENST00000262894	human	ensembl	74_37	+1	known	missense	c.598	p.G200W	0.091	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF225	HGNC	ENSG00000256294	tier1	-	-	54	0	0.00	38	10	20.83	54	0	0.00	33	12	26.67
ZNF710	0	genome.wustl.edu	37	15	90611108	90611108	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	15	90611108	90611108	G	T	SNP	ZNF710	ENST00000268154	human	ensembl	74_37	+1	known	missense	c.739	p.V247L	0.972	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF710	HGNC	ENSG00000140548	tier1	-	-	144	0	0.00	111	15	11.90	50	0	0.00	31	4	11.43
UBE2I	0	genome.wustl.edu	37	16	1364372	1364372	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	16	1364372	1364372	A	G	SNP	UBE2I	ENST00000325437	human	ensembl	74_37	+1	known	missense	c.145	p.K49E	1.000	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2I	HGNC	ENSG00000103275	tier1	-	-	71	0	0.00	34	7	17.07	75	0	0.00	45	7	13.46
EMR1	0	genome.wustl.edu	37	19	6896476	6896476	+	Silent	SNP	C	C	T			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	19	6896476	6896476	C	T	SNP	EMR1	ENST00000312053	human	ensembl	74_37	+1	known	silent	c.162	p.Y54	0.095	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd_dom,pfam_GPS_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	EMR1	HGNC	ENSG00000174837	tier1	-	-	86	0	0.00	50	8	13.79	104	0	0.00	81	10	10.99
DROSHA	0	genome.wustl.edu	37	5	31526295	31526295	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	5	31526295	31526295	G	A	SNP	DROSHA	ENST00000344624	human	ensembl	74_37	-1	known	missense	c.745	p.R249W	0.996	NULL	pfam_RNase_III_dom,pfam_dsR-bd_dom,superfamily_RNase_III_dom,smart_RNase_III_dom,smart_dsR-bd_dom,pfscan_dsR-bd_dom,pfscan_RNase_III_dom	-	no_errors	DROSHA	HGNC	ENSG00000113360	tier1	-	-	46	0	0.00	57	5	8.06	62	0	0.00	64	10	13.51
SNORD114-21	0	genome.wustl.edu	37	14	101448360	101448360	+	R	SNP	C	C	T			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	14	101448360	101448360	C	T	SNP	SNORD114-21	ENST00000606412	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNORD114-21	HGNC	ENSG00000272344	tier1	-	-	86	0	0.00	72	26	26.53	87	0	0.00	55	10	15.38
SYNE1	0	genome.wustl.edu	37	6	152772193	152772193	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	6	152772193	152772193	T	G	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.3175	p.K1059Q	0.217	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	tier1	-	-	44	0	0.00	41	4	8.89	72	0	0.00	38	7	15.56
UNC45B	0	genome.wustl.edu	37	17	33477089	33477089	+	Silent	SNP	C	C	T			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	17	33477089	33477089	C	T	SNP	UNC45B	ENST00000268876	human	ensembl	74_37	+1	known	silent	c.228	p.D76	1.000	superfamily_ARM-type_fold,smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_UNC-45/Ring3,superfamily_ARM-type_fold,smart_TPR_repeat,smart_Armadillo,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	UNC45B	HGNC	ENSG00000141161	tier1	-	-	112	0	0.00	64	19	22.89	91	0	0.00	63	9	12.33
TOR1A	0	genome.wustl.edu	37	9	132584885	132584885	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	9	132584885	132584885	T	C	SNP	TOR1A	ENST00000351698	human	ensembl	74_37	-1	known	missense	c.419	p.H140R	0.997	pfam_Torsin,superfamily_P-loop_NTPase,pirsf_Torsin_subgr	pfam_Torsin,superfamily_P-loop_NTPase,pirsf_Torsin_subgr	-	no_errors	TOR1A	HGNC	ENSG00000136827	tier1	-	-	81	0	0.00	69	11	13.75	156	0	0.00	110	18	14.06
EPHA6	0	genome.wustl.edu	37	3	97251225	97251225	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	3	97251225	97251225	G	A	SNP	EPHA6	ENST00000389672	human	ensembl	74_37	+1	known	missense	c.2224	p.G742R	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA6	HGNC	ENSG00000080224	tier1	-	-	71	0	0.00	80	24	22.86	148	0	0.00	83	22	20.75
PIK3AP1	0	genome.wustl.edu	37	10	98412517	98412517	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	10	98412517	98412517	G	T	SNP	PIK3AP1	ENST00000339364	human	ensembl	74_37	-1	known	missense	c.650	p.S217Y	0.589	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	PIK3AP1	HGNC	ENSG00000155629	tier1	-	-	51	0	0.00	53	13	19.70	107	0	0.00	75	14	15.73
NRG2	0	genome.wustl.edu	37	5	139251347	139251347	+	Silent	SNP	G	G	A			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	5	139251347	139251347	G	A	SNP	NRG2	ENST00000545385	human	ensembl	74_37	-1	known	silent	c.1071	p.G357	0.936	pfscan_EG-like_dom	pfam_Neuregulin_1_C,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_EG-like_dom,pfscan_Ig-like_dom	-	no_errors	NRG2	HGNC	ENSG00000158458	tier1	-	-	95	0	0.00	60	6	9.09	122	0	0.00	66	9	11.84
CDH7	0	genome.wustl.edu	37	18	63430124	63430124	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	18	63430124	63430124	G	T	SNP	CDH7	ENST00000323011	human	ensembl	74_37	+1	known	missense	c.46	p.A16S	0.994	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH7	HGNC	ENSG00000081138	tier1	-	-	47	0	0.00	37	4	9.76	88	0	0.00	47	9	15.79
CAC1C	0	genome.wustl.edu	37	12	2786965	2786965	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	12	2786965	2786965	G	A	SNP	CAC1C	ENST00000399634	human	ensembl	74_37	+1	known	missense	c.5023	p.A1675T	0.953	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CAC1C	HGNC	ENSG00000151067	tier1	-	-	87	0	0.00	46	15	24.59	64	0	0.00	32	8	20.00
KC3	0	genome.wustl.edu	37	1	111215894	111215894	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	1	111215894	111215894	T	C	SNP	KC3	ENST00000369769	human	ensembl	74_37	-1	known	missense	c.1538	p.E513G	1.000	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.3,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KC3	HGNC	ENSG00000177272	tier1	-	-	52	0	0.00	40	12	23.08	99	0	0.00	82	26	24.07
TNFRSF9	0	genome.wustl.edu	37	1	7998781	7998781	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	1	7998781	7998781	C	T	SNP	TNFRSF9	ENST00000377507	human	ensembl	74_37	-1	known	missense	c.208	p.G70S	1.000	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_9	-	no_errors	TNFRSF9	HGNC	ENSG00000049249	tier1	-	-	77	0	0.00	51	23	31.08	92	0	0.00	61	37	37.76
OR51D1	0	genome.wustl.edu	37	11	4661220	4661220	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	11	4661220	4661220	G	A	SNP	OR51D1	ENST00000357605	human	ensembl	74_37	+1	known	missense	c.200	p.R67Q	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51D1	HGNC	ENSG00000197428	tier1	rs138099428	-	68	0	0.00	53	20	27.03	116	0	0.00	71	31	30.39
DST	0	genome.wustl.edu	37	6	56397194	56397194	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	6	56397194	56397194	G	A	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	missense	c.16963	p.L5655F	1.000	pfam_Spectrin_repeat,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914	tier1	-	-	76	0	0.00	68	11	13.92	100	0	0.00	60	11	15.49
SLC30A9	0	genome.wustl.edu	37	4	42003739	42003739	+	Silent	SNP	G	G	A			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	4	42003739	42003739	G	A	SNP	SLC30A9	ENST00000264451	human	ensembl	74_37	+1	known	silent	c.216	p.Q72	1.000	NULL	pfam_Cation_efflux,superfamily_D-bd_dom_put,tigrfam_Cation_efflux	-	no_errors	SLC30A9	HGNC	ENSG00000014824	tier1	-	-	74	0	0.00	108	17	13.60	155	1	0.64	165	32	16.24
KY	0	genome.wustl.edu	37	3	134329079	134329079	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	3	134329079	134329079	C	A	SNP	KY	ENST00000423778	human	ensembl	74_37	-1	known	missense	c.857	p.G286V	1.000	NULL	pfam_Transglutaminase-like,smart_Transglutaminase-like	-	no_errors	KY	HGNC	ENSG00000174611	tier1	-	-	52	0	0.00	55	6	9.84	51	0	0.00	31	7	18.42
DH8	0	genome.wustl.edu	37	6	38800097	38800097	+	Splice_Site	SNP	G	G	A			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	6	38800097	38800097	G	A	SNP	DH8	ENST00000359357	human	ensembl	74_37	+1	known	splice_site	c.3538-1	e27-1	0.986	-	-	-	no_errors	DH8	HGNC	ENSG00000124721	tier1	-	-	80	0	0.00	87	11	11.22	157	0	0.00	92	13	12.38
KIF22	0	genome.wustl.edu	37	16	29815365	29815365	+	Silent	SNP	G	G	A			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	16	29815365	29815365	G	A	SNP	KIF22	ENST00000160827	human	ensembl	74_37	+1	known	silent	c.1656	p.K552	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,superfamily_RuvA_2-like,smart_Kinesin_motor_dom,smart_Hlx-hairpin-Hlx_D-bd_motif,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF22	HGNC	ENSG00000079616	tier1	-	-	24	0	0.00	18	3	14.29	76	0	0.00	62	10	13.89
MGAM	0	genome.wustl.edu	37	7	141708495	141708495	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	7	141708495	141708495	C	T	SNP	MGAM	ENST00000549489	human	ensembl	74_37	+1	known	missense	c.317	p.P106L	0.076	pfam_P_trefoil,smart_P_trefoil	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	tier1	-	-	56	0	0.00	61	12	16.44	122	0	0.00	101	30	22.73
TUBB2B	0	genome.wustl.edu	37	6	3227775	3227775	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	6	3227775	3227775	C	A	SNP	TUBB2B	ENST00000259818	human	ensembl	74_37	-1	known	missense	c.3	p.M1I	1.000	pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB2B	HGNC	ENSG00000137285	tier1	-	-	319	1	0.31	238	40	14.39	73	0	0.00	54	8	12.90
DHRS4-AS1	0	genome.wustl.edu	37	14	24410284	24410284	+	R	SNP	G	G	A			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	14	24410284	24410284	G	A	SNP	DHRS4-AS1	ENST00000555045	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	DHRS4-AS1	HGNC	ENSG00000215256	tier1	-	-	81	0	0.00	55	5	8.33	161	0	0.00	99	18	15.25
OR4Q3	0	genome.wustl.edu	37	14	20215944	20215944	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	14	20215944	20215944	G	A	SNP	OR4Q3	ENST00000331723	human	ensembl	74_37	+1	known	missense	c.358	p.A120T	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4Q3	HGNC	ENSG00000182652	tier1	-	-	118	0	0.00	118	12	9.23	165	0	0.00	103	14	11.86
RYR1	0	genome.wustl.edu	37	19	39077992	39077992	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	19	39077992	39077992	G	T	SNP	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	nonsense	c.15049	p.E5017*	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	tier1	-	-	48	0	0.00	48	9	15.79	86	0	0.00	73	11	13.10
HMHA1	0	genome.wustl.edu	37	19	1080092	1080092	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	19	1080092	1080092	G	C	SNP	HMHA1	ENST00000313093	human	ensembl	74_37	+1	known	missense	c.1678	p.E560Q	0.987	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_FCH_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	HMHA1	HGNC	ENSG00000180448	tier1	-	-	90	0	0.00	109	23	17.42	24	0	0.00	35	7	16.67
C2CD5	0	genome.wustl.edu	37	12	22610069	22610069	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	12	22610069	22610069	C	T	SNP	C2CD5	ENST00000333957	human	ensembl	74_37	-1	known	missense	c.2560	p.V854M	0.014	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	C2CD5	HGNC	ENSG00000111731	tier1	-	-	75	0	0.00	56	16	22.22	155	0	0.00	101	39	27.86
IDH3G	0	genome.wustl.edu	37	X	153055183	153055183	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	X	153055183	153055183	G	T	SNP	IDH3G	ENST00000217901	human	ensembl	74_37	-1	known	missense	c.330	p.N110K	1.000	pfam_IsoPropMal-DH-like_dom,tigrfam_Isocitrate_DH_D	pfam_IsoPropMal-DH-like_dom,tigrfam_Isocitrate_DH_D	-	no_errors	IDH3G	HGNC	ENSG00000067829	tier1	-	-	50	0	0.00	32	7	17.95	63	1	1.56	46	6	11.54
SLC34A2	0	genome.wustl.edu	37	4	25667869	25667869	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	4	25667869	25667869	G	A	SNP	SLC34A2	ENST00000382051	human	ensembl	74_37	+1	known	missense	c.499	p.V167I	0.988	pfam_Na/Pi_transpt,tigrfam_Na/Pi_transpt	pfam_Na/Pi_transpt,superfamily_ABC1_TM_dom,tigrfam_Na/Pi_transpt	-	no_errors	SLC34A2	HGNC	ENSG00000157765	tier1	-	-	55	0	0.00	56	5	8.20	67	0	0.00	54	6	10.00
OR2L8	0	genome.wustl.edu	37	1	248112446	248112446	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	1	248112446	248112446	G	T	SNP	OR2L8	ENST00000357191	human	ensembl	74_37	+1	known	missense	c.287	p.C96F	0.988	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2L8	HGNC	ENSG00000196936	tier1	-	-	132	0	0.00	112	27	19.42	77	0	0.00	56	12	17.65
NCBP2	0	genome.wustl.edu	37	3	196664064	196664064	+	R	DEL	A	A	-			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	3	196664064	196664064	A	-	DEL	NCBP2	ENST00000467803	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	NCBP2	HGNC	ENSG00000114503	tier1			30	0	0.00	46	6	11.54	92	0	0.00	120	18	13.04
SALL3	0	genome.wustl.edu	37	18	76754525	76754525	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	18	76754525	76754525	A	G	SNP	SALL3	ENST00000537592	human	ensembl	74_37	+1	known	missense	c.2534	p.N845S	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL3	HGNC	ENSG00000256463	tier1	-	-	41	0	0.00	24	7	22.58	24	0	0.00	6	3	33.33
RGS18	0	genome.wustl.edu	37	1	192127772	192127772	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	1	192127772	192127772	A	G	SNP	RGS18	ENST00000367460	human	ensembl	74_37	+1	known	missense	c.5	p.E2G	0.997	NULL	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS18	HGNC	ENSG00000150681	tier1	-	-	47	0	0.00	42	5	10.64	133	0	0.00	100	5	4.76
CSPG4	0	genome.wustl.edu	37	15	75982625	75982625	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	15	75982625	75982625	G	A	SNP	CSPG4	ENST00000308508	human	ensembl	74_37	-1	known	missense	c.781	p.R261W	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	CSPG4	HGNC	ENSG00000173546	tier1	-	-	92	0	0.00	89	9	9.18	67	0	0.00	64	6	8.57
TTLL6	0	genome.wustl.edu	37	17	46876980	46876980	+	Silent	SNP	G	G	A			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	17	46876980	46876980	G	A	SNP	TTLL6	ENST00000393382	human	ensembl	74_37	-1	known	silent	c.754	p.L252	1.000	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL6	HGNC	ENSG00000170703	tier1	-	-	91	0	0.00	67	27	28.72	138	1	0.72	131	11	7.75
RORC	0	genome.wustl.edu	37	1	151779974	151779974	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	1	151779974	151779974	C	T	SNP	RORC	ENST00000392697	human	ensembl	74_37	-1	known	missense	c.1693	p.E565K	0.280	NULL	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_ROR_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	RORC	HGNC	ENSG00000143365	tier1	-	-	91	0	0.00	51	6	10.53	107	0	0.00	93	8	7.92
CAPN13	0	genome.wustl.edu	37	2	30954221	30954221	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	2	30954221	30954221	T	C	SNP	CAPN13	ENST00000295055	human	ensembl	74_37	-1	known	missense	c.1972	p.T658A	0.999	NULL	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN13	HGNC	ENSG00000162949	tier1	-	-	61	0	0.00	42	8	16.00	101	0	0.00	85	7	7.61
PDE3A	0	genome.wustl.edu	37	12	20833347	20833347	+	R	SNP	G	G	T			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	12	20833347	20833347	G	T	SNP	PDE3A	ENST00000544307	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.992	-	-	-	no_errors	PDE3A	HGNC	ENSG00000172572	tier1	-	-	95	0	0.00	64	7	9.86	176	0	0.00	115	12	9.45
LAMA3	0	genome.wustl.edu	37	18	21427505	21427505	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	18	21427505	21427505	T	A	SNP	LAMA3	ENST00000313654	human	ensembl	74_37	+1	known	missense	c.4009	p.C1337S	1.000	smart_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Growth_fac_rcpt_N_dom,superfamily_Galactose-bd-like,superfamily_STAT_TF_coiled-coil,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA3	HGNC	ENSG00000053747	tier1	-	-	64	0	0.00	90	14	13.46	21	0	0.00	64	4	5.88
ZBED1	0	genome.wustl.edu	37	X	2408604	2408604	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	X	2408604	2408604	G	A	SNP	ZBED1	ENST00000381218	human	ensembl	74_37	-1	known	nonsense	c.157	p.Q53*	1.000	pfam_Znf_BED_prd,smart_Znf_BED_prd,pfscan_Znf_BED_prd	pfam_HATC_dom_C,pfam_Znf_BED_prd,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED1	HGNC	ENSG00000214717	tier1	-	-	200	0	0.00	92	29	23.97	141	0	0.00	63	6	8.70
SLMAP	0	genome.wustl.edu	37	3	57894866	57894866	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	3	57894866	57894866	A	G	SNP	SLMAP	ENST00000428312	human	ensembl	74_37	+1	known	missense	c.1637	p.Q546R	1.000	pfam_PFD_beta-like,superfamily_Prefoldin	pfam_FHA_dom,pfam_PFD_beta-like,superfamily_SMAD_FHA_domain,superfamily_Prefoldin,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	SLMAP	HGNC	ENSG00000163681	tier1	-	-	110	0	0.00	123	12	8.89	127	0	0.00	122	12	8.96
SELV	0	genome.wustl.edu	37	19	40009544	40009544	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	19	40009544	40009544	A	G	SNP	SELV	ENST00000423711	human	ensembl	74_37	+1	known	missense	c.890	p.E297G	0.985	pfam_Selenoprotein_Rdx-typ,superfamily_Thioredoxin-like_fold,tigrfam_Selenoprotein_Rdx-typ	pfam_Selenoprotein_Rdx-typ,superfamily_Thioredoxin-like_fold,tigrfam_Selenoprotein_Rdx-typ	-	no_errors	SELV	Uniprot_gn	ENSG00000186838	tier1	-	-	37	0	0.00	32	10	23.81	87	0	0.00	81	6	6.90
CLEC4F	0	genome.wustl.edu	37	2	71043556	71043556	+	Silent	SNP	G	G	A			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	2	71043556	71043556	G	A	SNP	CLEC4F	ENST00000272367	human	ensembl	74_37	-1	known	silent	c.957	p.F319	0.000	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_Prefoldin,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	CLEC4F	HGNC	ENSG00000152672	tier1	-	-	46	0	0.00	41	4	8.89	153	0	0.00	92	9	8.82
ADPGK	0	genome.wustl.edu	37	15	73044752	73044752	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	15	73044752	73044752	C	A	SNP	ADPGK	ENST00000311669	human	ensembl	74_37	-1	known	missense	c.1421	p.R474L	1.000	pfam_ADP_PFK/GK	pfam_ADP_PFK/GK	-	no_errors	ADPGK	HGNC	ENSG00000159322	tier1	-	-	50	0	0.00	61	7	10.29	142	0	0.00	121	9	6.92
CPVL	0	genome.wustl.edu	37	7	29160601	29160601	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	7	29160601	29160601	G	C	SNP	CPVL	ENST00000265394	human	ensembl	74_37	-1	known	missense	c.77	p.S26C	0.005	NULL	pfam_Peptidase_S10,prints_Peptidase_S10	-	no_errors	CPVL	HGNC	ENSG00000106066	tier1	-	-	66	0	0.00	52	9	14.75	107	0	0.00	124	10	7.46
LTN1	0	genome.wustl.edu	37	21	30316157	30316157	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	21	30316157	30316157	G	A	SNP	LTN1	ENST00000389194	human	ensembl	74_37	-1	known	missense	c.4190	p.T1397M	0.891	NULL	pfam_Znf_C3HC4_RING-type,superfamily_ARM-type_fold,smart_Znf_RING-CH,pfscan_Znf_RING	-	no_errors	LTN1	HGNC	ENSG00000198862	tier1	-	-	67	0	0.00	77	9	10.47	105	0	0.00	80	7	8.05
SOX12	0	genome.wustl.edu	37	20	307338	307338	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	20	307338	307338	G	A	SNP	SOX12	ENST00000342665	human	ensembl	74_37	+1	known	missense	c.770	p.R257K	1.000	pirsf_SOX-12/11/4a	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pirsf_SOX-12/11/4a,pfscan_HMG_box_dom	-	no_errors	SOX12	HGNC	ENSG00000177732	tier1	-	-	33	0	0.00	28	4	12.50	8	0	0.00	0	0	0.00
ENSG00000215941	0	genome.wustl.edu	37	3	38948822	38948843	+	R	DEL	TGTGTGTGTGTGTATATATCTA	TGTGTGTGTGTGTATATATCTA	-			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	TGTGTGTGTGTGTATATATCTA	TGTGTGTGTGTGTATATATCTA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	3	38948822	38948843	TGTGTGTGTGTGTATATATCTA	-	DEL	ENSG00000215941	ENST00000401122	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.193:0.195:0.137:0.126:0.125:0.119:0.107:0.069:0.062:0.049:0.028:0.020:0.007:0.002:0.001:0.001:0.002:0.002:0.002:0.001:0.001:0.001	-	-	-	no_errors	AC116038.1	Clone_based_ensembl_gene	ENSG00000215941	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
ENSG00000221388	0	genome.wustl.edu	37	2	213628297	213628298	+	R	INS	-	-	TATATA			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	2	213628297	213628298	-	TATATA	INS	ENSG00000221388	ENST00000408461	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	AC093865.1	Clone_based_ensembl_gene	ENSG00000221388	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
JUNB	0	genome.wustl.edu	37	19	12902946	12902954	+	In_Frame_Del	DEL	GCAGGGGGC	GCAGGGGGC	-			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	GCAGGGGGC	GCAGGGGGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	19	12902946	12902954	GCAGGGGGC	-	DEL	JUNB	ENST00000302754	human	ensembl	74_37	+1	known	in_frame_del	c.361_369	p.AGG124in_frame_del	0.966:0.969:0.937:0.987:0.990:0.985:0.851:0.799:0.762	pfam_JNK	pfam_JNK,pfam_bZIP,superfamily_TF_D-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Jun	-	no_errors	JUNB	HGNC	ENSG00000171223	tier1			3	0	0.00	2	0	0.00	3	0	0.00	2	0	0.00
LINC00266-1	0	genome.wustl.edu	37	20	62934863	62934864	+	R	INS	-	-	TT			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	20	62934863	62934864	-	TT	INS	LINC00266-1	ENST00000279067	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.448:0.498	-	-	-	no_errors	LINC00266-1	HGNC	ENSG00000149656	tier1			40	0	0.00	41	7	14.58	0	0	0.00	0	0	0.00
PABPN1	0	genome.wustl.edu	37	14	23790681	23790683	+	In_Frame_Del	DEL	GGC	GGC	-			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	GGC	GGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	14	23790681	23790683	GGC	-	DEL	PABPN1	ENST00000216727	human	ensembl	74_37	+1	known	in_frame_del	c.3_5	p.A5in_frame_del	1.000:1.000:1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PABPN1	HGNC	ENSG00000100836	tier1			36	0	0.00	29	3	9.38	0	0	0.00	1	0	0.00
PLBD1	0	genome.wustl.edu	37	12	14720555	14720557	+	In_Frame_Del	DEL	GCA	GCA	-			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	GCA	GCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	12	14720555	14720557	GCA	-	DEL	PLBD1	ENST00000240617	human	ensembl	74_37	-1	known	in_frame_del	c.76_74	p.L25in_frame_del	0.009:0.005:0.008	NULL	pfam_PLipase_B-like	-	no_errors	PLBD1	HGNC	ENSG00000121316	tier1			10	0	0.00	7	3	30.00	1	0	0.00	0	0	0.00
RBM47	0	genome.wustl.edu	37	4	40440825	40440825	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	4	40440825	40440825	G	A	SNP	RBM47	ENST00000295971	human	ensembl	74_37	-1	known	missense	c.86	p.A29V	1.000	tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	RBM47	HGNC	ENSG00000163694	tier1	-	-	44	0	0.00	34	9	20.93	0	0	0.00	0	0	0.00
STK25	0	genome.wustl.edu	37	2	242447504	242447504	+	R	DEL	G	G	-			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	2	242447504	242447504	G	-	DEL	STK25	ENST00000436917	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.252	-	-	-	no_errors	STK25	HGNC	ENSG00000115694	tier1			114	0	0.00	51	9	15.00	2	0	0.00	4	0	0.00
IF1	0	genome.wustl.edu	37	9	130825710	130825710	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	9	130825710	130825710	C	G	SNP	IF1	ENST00000373078	human	ensembl	74_37	-1	known	missense	c.981	p.Q327H	0.998	NULL	NULL	-	no_errors	IF1	HGNC	ENSG00000171169	tier1	-	-	53	0	0.00	32	7	17.95	62	0	0.00	40	3	6.98
ATP2B2	0	genome.wustl.edu	37	3	10370153	10370153	+	R	SNP	G	G	A			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	3	10370153	10370153	G	A	SNP	ATP2B2	ENST00000467702	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.141	-	-	-	no_errors	ATP2B2	HGNC	ENSG00000157087	tier1	-	-	138	0	0.00	93	18	16.22	56	0	0.00	75	2	2.60
FLT4	0	genome.wustl.edu	37	5	180030333	180030333	+	Silent	SNP	C	C	G			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	5	180030333	180030333	C	G	SNP	FLT4	ENST00000261937	human	ensembl	74_37	-1	known	silent	c.3951	p.G1317	0.144	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR3_rcpt	-	no_errors	FLT4	HGNC	ENSG00000037280	tier1	-	-	116	0	0.00	77	15	16.13	41	0	0.00	35	2	5.41
TECPR1	0	genome.wustl.edu	37	7	97860661	97860661	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	7	97860661	97860661	C	T	SNP	TECPR1	ENST00000379795	human	ensembl	74_37	-1	known	missense	c.2002	p.V668M	1.000	NULL	pfam_Beta-propeller_rpt_TECPR,superfamily_RCC1/BLIP-II,smart_Beta-propeller_rpt_TECPR,smart_Peroxin/Ferlin	-	no_errors	TECPR1	HGNC	ENSG00000205356	tier1	-	-	70	0	0.00	48	10	17.24	68	0	0.00	34	2	5.56
NIPBL	0	genome.wustl.edu	37	5	36995692	36995693	+	R	INS	-	-	T			TCGA-DX-AB2Z-01A-11D-A387-09	TCGA-DX-AB2Z-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	24690075-90d4-4ca2-89da-feff903d6810	3c1d12e0-8846-46c2-86ba-a6ef01cbf595	5	36995692	36995693	-	T	INS	NIPBL	ENST00000503274	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.869:0.879	-	-	-	no_errors	NIPBL	HGNC	ENSG00000164190	tier1			25	0	0.00	44	5	10.20	54	0	0.00	68	2	2.86
