Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
ABCA10	0	genome.wustl.edu	37	17	67215820	67215820	+	Missense_Mutation	SNP	C	C	T			TCGA-FX-A76Y-01A-11D-A351-09	TCGA-FX-A76Y-10A-01D-A351-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b20604a-cda0-4e4e-b0fa-a37129cdef5e	ba44c28e-2e23-4deb-b9d5-ea07f07e8d79	17	67215820	67215820	C	T	SNP	ABCA10	ENST00000269081	human	ensembl	74_37	-1	known	missense	c.396	p.M132I	0.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA10	HGNC	ENSG00000154263	tier1	-	-	41	0	0.00	39	13	25.00	57	0	0.00	79	54	40.30
HERC6	0	genome.wustl.edu	37	4	89338623	89338623	+	Silent	SNP	C	C	T			TCGA-FX-A76Y-01A-11D-A351-09	TCGA-FX-A76Y-10A-01D-A351-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b20604a-cda0-4e4e-b0fa-a37129cdef5e	ba44c28e-2e23-4deb-b9d5-ea07f07e8d79	4	89338623	89338623	C	T	SNP	HERC6	ENST00000264346	human	ensembl	74_37	+1	known	silent	c.1605	p.I535	1.000	NULL	pfam_HECT,pfam_Reg_chr_condens,superfamily_HECT,superfamily_RCC1/BLIP-II,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC6	HGNC	ENSG00000138642	tier1	-	-	68	0	0.00	45	30	40.00	53	0	0.00	42	20	32.26
PCLO	0	genome.wustl.edu	37	7	82583496	82583496	+	Missense_Mutation	SNP	C	C	A			TCGA-FX-A76Y-01A-11D-A351-09	TCGA-FX-A76Y-10A-01D-A351-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b20604a-cda0-4e4e-b0fa-a37129cdef5e	ba44c28e-2e23-4deb-b9d5-ea07f07e8d79	7	82583496	82583496	C	A	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.6773	p.S2258I	0.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	tier1	-	-	48	0	0.00	19	21	52.50	57	0	0.00	48	48	50.00
LAMC3	0	genome.wustl.edu	37	9	133967191	133967191	+	R	SNP	C	C	T			TCGA-FX-A76Y-01A-11D-A351-09	TCGA-FX-A76Y-10A-01D-A351-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b20604a-cda0-4e4e-b0fa-a37129cdef5e	ba44c28e-2e23-4deb-b9d5-ea07f07e8d79	9	133967191	133967191	C	T	SNP	LAMC3	ENST00000462567	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LAMC3	HGNC	ENSG00000050555	tier1	-	-	107	0	0.00	49	33	40.24	50	0	0.00	22	7	24.14
SACS	0	genome.wustl.edu	37	13	23906926	23906926	+	Missense_Mutation	SNP	G	G	C			TCGA-FX-A76Y-01A-11D-A351-09	TCGA-FX-A76Y-10A-01D-A351-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b20604a-cda0-4e4e-b0fa-a37129cdef5e	ba44c28e-2e23-4deb-b9d5-ea07f07e8d79	13	23906926	23906926	G	C	SNP	SACS	ENST00000382292	human	ensembl	74_37	-1	known	missense	c.11089	p.L3697V	0.713	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835	tier1	-	-	38	0	0.00	43	14	24.56	95	0	0.00	140	35	19.89
C12orf55	0	genome.wustl.edu	37	12	96897758	96897758	+	Missense_Mutation	SNP	A	A	C			TCGA-FX-A76Y-01A-11D-A351-09	TCGA-FX-A76Y-10A-01D-A351-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b20604a-cda0-4e4e-b0fa-a37129cdef5e	ba44c28e-2e23-4deb-b9d5-ea07f07e8d79	12	96897758	96897758	A	C	SNP	C12orf55	ENST00000524981	human	ensembl	74_37	+1	putative	missense	c.518	p.K173T	0.988	NULL	superfamily_Fibronectin_type3	-	no_errors	C12orf55	HGNC	ENSG00000188596	tier1	-	-	75	0	0.00	44	31	41.33	92	0	0.00	96	61	38.85
PRT1	0	genome.wustl.edu	37	8	144658831	144658831	+	Missense_Mutation	SNP	G	G	T			TCGA-FX-A76Y-01A-11D-A351-09	TCGA-FX-A76Y-10A-01D-A351-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b20604a-cda0-4e4e-b0fa-a37129cdef5e	ba44c28e-2e23-4deb-b9d5-ea07f07e8d79	8	144658831	144658831	G	T	SNP	PRT1	ENST00000276844	human	ensembl	74_37	-1	known	missense	c.866	p.T289N	0.999	pfam_Nic_PRibTrfase-Fam,superfamily_Quinolinate_PRibosylTrfase_C,pirsf_Nic_PRibTrfase-Fam,tigrfam_Nic_PRibTrfase_pncB	pfam_Nic_PRibTrfase-Fam,superfamily_Quinolinate_PRibosylTrfase_C,pirsf_Nic_PRibTrfase-Fam,tigrfam_Nic_PRibTrfase_pncB	-	no_errors	PRT1	HGNC	ENSG00000147813	tier1	-	-	19	0	0.00	17	12	41.38	43	0	0.00	18	4	18.18
NCKAP5	0	genome.wustl.edu	37	2	133542322	133542322	+	Missense_Mutation	SNP	C	C	A			TCGA-FX-A76Y-01A-11D-A351-09	TCGA-FX-A76Y-10A-01D-A351-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b20604a-cda0-4e4e-b0fa-a37129cdef5e	ba44c28e-2e23-4deb-b9d5-ea07f07e8d79	2	133542322	133542322	C	A	SNP	NCKAP5	ENST00000317721	human	ensembl	74_37	-1	known	missense	c.2062	p.V688F	0.217	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771	tier1	-	-	52	0	0.00	26	30	53.57	107	0	0.00	49	45	47.37
LRRC31	0	genome.wustl.edu	37	3	169571430	169571430	+	R	SNP	C	C	T			TCGA-FX-A76Y-01A-11D-A351-09	TCGA-FX-A76Y-10A-01D-A351-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b20604a-cda0-4e4e-b0fa-a37129cdef5e	ba44c28e-2e23-4deb-b9d5-ea07f07e8d79	3	169571430	169571430	C	T	SNP	LRRC31	ENST00000397805	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LRRC31	HGNC	ENSG00000114248	tier1	-	-	47	0	0.00	38	29	43.28	126	0	0.00	85	62	42.18
LAMA1	0	genome.wustl.edu	37	18	7050762	7050762	+	Silent	SNP	G	G	T			TCGA-FX-A76Y-01A-11D-A351-09	TCGA-FX-A76Y-10A-01D-A351-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b20604a-cda0-4e4e-b0fa-a37129cdef5e	ba44c28e-2e23-4deb-b9d5-ea07f07e8d79	18	7050762	7050762	G	T	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	silent	c.519	p.T173	0.000	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680	tier1	-	-	85	0	0.00	41	27	39.71	82	0	0.00	48	29	37.18
MAP1B	0	genome.wustl.edu	37	5	71489794	71489794	+	Missense_Mutation	SNP	C	C	A			TCGA-FX-A76Y-01A-11D-A351-09	TCGA-FX-A76Y-10A-01D-A351-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b20604a-cda0-4e4e-b0fa-a37129cdef5e	ba44c28e-2e23-4deb-b9d5-ea07f07e8d79	5	71489794	71489794	C	A	SNP	MAP1B	ENST00000296755	human	ensembl	74_37	+1	known	missense	c.612	p.H204Q	1.000	NULL	pfam_MAP1B_neuraxin	-	no_errors	MAP1B	HGNC	ENSG00000131711	tier1	-	-	63	0	0.00	42	29	40.85	86	0	0.00	42	48	53.33
FMOD	0	genome.wustl.edu	37	1	203311601	203311601	+	Missense_Mutation	SNP	C	C	T			TCGA-FX-A76Y-01A-11D-A351-09	TCGA-FX-A76Y-10A-01D-A351-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b20604a-cda0-4e4e-b0fa-a37129cdef5e	ba44c28e-2e23-4deb-b9d5-ea07f07e8d79	1	203311601	203311601	C	T	SNP	FMOD	ENST00000354955	human	ensembl	74_37	-1	known	missense	c.1001	p.C334Y	1.000	pfam_Leu-rich_rpt	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	FMOD	HGNC	ENSG00000122176	tier1	-	-	19	0	0.00	7	8	53.33	53	0	0.00	23	28	54.90
SOX5	0	genome.wustl.edu	37	12	23998945	23998945	+	Missense_Mutation	SNP	C	C	A			TCGA-FX-A76Y-01A-11D-A351-09	TCGA-FX-A76Y-10A-01D-A351-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b20604a-cda0-4e4e-b0fa-a37129cdef5e	ba44c28e-2e23-4deb-b9d5-ea07f07e8d79	12	23998945	23998945	C	A	SNP	SOX5	ENST00000451604	human	ensembl	74_37	-1	known	missense	c.453	p.M151I	1.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX5	HGNC	ENSG00000134532	tier1	-	-	45	0	0.00	25	5	16.67	58	0	0.00	44	13	22.81
ARAP2	0	genome.wustl.edu	37	4	36069535	36069535	+	Missense_Mutation	SNP	C	C	A			TCGA-FX-A76Y-01A-11D-A351-09	TCGA-FX-A76Y-10A-01D-A351-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b20604a-cda0-4e4e-b0fa-a37129cdef5e	ba44c28e-2e23-4deb-b9d5-ea07f07e8d79	4	36069535	36069535	C	A	SNP	ARAP2	ENST00000303965	human	ensembl	74_37	-1	known	missense	c.5109	p.L1703F	0.000	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_SAM_2,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP2	HGNC	ENSG00000047365	tier1	-	-	46	0	0.00	17	25	59.52	48	0	0.00	53	45	45.92
TCEB3	0	genome.wustl.edu	37	1	24080854	24080854	+	Silent	SNP	A	A	G			TCGA-FX-A76Y-01A-11D-A351-09	TCGA-FX-A76Y-10A-01D-A351-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b20604a-cda0-4e4e-b0fa-a37129cdef5e	ba44c28e-2e23-4deb-b9d5-ea07f07e8d79	1	24080854	24080854	A	G	SNP	TCEB3	ENST00000418390	human	ensembl	74_37	+1	known	silent	c.1773	p.S591	0.831	NULL	pfam_R_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,pfscan_F-box_dom	-	no_errors	TCEB3	HGNC	ENSG00000011007	tier1	-	-	39	0	0.00	34	18	34.62	116	0	0.00	68	28	29.17
PRODH	0	genome.wustl.edu	37	22	18904407	18904407	+	Missense_Mutation	SNP	G	G	A			TCGA-FX-A76Y-01A-11D-A351-09	TCGA-FX-A76Y-10A-01D-A351-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b20604a-cda0-4e4e-b0fa-a37129cdef5e	ba44c28e-2e23-4deb-b9d5-ea07f07e8d79	22	18904407	18904407	G	A	SNP	PRODH	ENST00000357068	human	ensembl	74_37	-1	known	missense	c.1522	p.R508C	0.031	pfam_Proline_DH	pfam_Proline_DH	-	no_errors	PRODH	HGNC	ENSG00000100033	tier1	-	-	49	0	0.00	18	13	41.94	24	0	0.00	11	15	57.69
RNF149	0	genome.wustl.edu	37	2	101893740	101893740	+	Missense_Mutation	SNP	G	G	T			TCGA-FX-A76Y-01A-11D-A351-09	TCGA-FX-A76Y-10A-01D-A351-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b20604a-cda0-4e4e-b0fa-a37129cdef5e	ba44c28e-2e23-4deb-b9d5-ea07f07e8d79	2	101893740	101893740	G	T	SNP	RNF149	ENST00000295317	human	ensembl	74_37	-1	known	missense	c.1163	p.A388D	0.002	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF149	HGNC	ENSG00000163162	tier1	-	-	73	0	0.00	43	9	17.31	53	1	1.85	44	9	16.98
RBM15	0	genome.wustl.edu	37	1	110883188	110883188	+	Missense_Mutation	SNP	G	G	C			TCGA-FX-A76Y-01A-11D-A351-09	TCGA-FX-A76Y-10A-01D-A351-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b20604a-cda0-4e4e-b0fa-a37129cdef5e	ba44c28e-2e23-4deb-b9d5-ea07f07e8d79	1	110883188	110883188	G	C	SNP	RBM15	ENST00000369784	human	ensembl	74_37	+1	known	missense	c.1161	p.E387D	0.989	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_SPOC_C,pfam_RRM_dom,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	RBM15	HGNC	ENSG00000162775	tier1	-	-	47	0	0.00	29	16	35.56	78	0	0.00	44	34	43.04
DH10	0	genome.wustl.edu	37	12	124298365	124298365	+	Missense_Mutation	SNP	C	C	A			TCGA-FX-A76Y-01A-11D-A351-09	TCGA-FX-A76Y-10A-01D-A351-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b20604a-cda0-4e4e-b0fa-a37129cdef5e	ba44c28e-2e23-4deb-b9d5-ea07f07e8d79	12	124298365	124298365	C	A	SNP	DH10	ENST00000409039	human	ensembl	74_37	+1	known	missense	c.3332	p.T1111K	0.945	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	-	no_errors	DH10	HGNC	ENSG00000197653	tier1	-	-	93	0	0.00	54	18	25.00	109	0	0.00	79	51	39.23
PHACTR1	0	genome.wustl.edu	37	6	13182854	13182854	+	Frame_Shift_Del	DEL	C	C	-			TCGA-FX-A76Y-01A-11D-A351-09	TCGA-FX-A76Y-10A-01D-A351-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b20604a-cda0-4e4e-b0fa-a37129cdef5e	ba44c28e-2e23-4deb-b9d5-ea07f07e8d79	6	13182854	13182854	C	-	DEL	PHACTR1	ENST00000379350	human	ensembl	74_37	+1	known	frame_shift_del	c.600	p.P201fs	0.996	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR1	HGNC	ENSG00000112137	tier1			33	0	0.00	34	15	30.61	66	0	0.00	26	16	38.10
FRMD6	0	genome.wustl.edu	37	14	52156445	52156445	+	R	SNP	T	T	G			TCGA-FX-A76Y-01A-11D-A351-09	TCGA-FX-A76Y-10A-01D-A351-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b20604a-cda0-4e4e-b0fa-a37129cdef5e	ba44c28e-2e23-4deb-b9d5-ea07f07e8d79	14	52156445	52156445	T	G	SNP	FRMD6	ENST00000556137	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FRMD6	HGNC	ENSG00000139926	tier1	-	-	78	0	0.00	33	37	52.86	9	0	0.00	6	4	40.00
HTR5A	0	genome.wustl.edu	37	7	154863029	154863029	+	Silent	SNP	C	C	T			TCGA-FX-A76Y-01A-11D-A351-09	TCGA-FX-A76Y-10A-01D-A351-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b20604a-cda0-4e4e-b0fa-a37129cdef5e	ba44c28e-2e23-4deb-b9d5-ea07f07e8d79	7	154863029	154863029	C	T	SNP	HTR5A	ENST00000287907	human	ensembl	74_37	+1	known	silent	c.420	p.Y140	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT5A_rcpt,prints_5HT_rcpt	-	no_errors	HTR5A	HGNC	ENSG00000157219	tier1	-	-	36	0	0.00	12	20	62.50	26	0	0.00	9	6	40.00
RBMXL3	0	genome.wustl.edu	37	X	114426788	114426788	+	Silent	SNP	C	C	T			TCGA-FX-A76Y-01A-11D-A351-09	TCGA-FX-A76Y-10A-01D-A351-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b20604a-cda0-4e4e-b0fa-a37129cdef5e	ba44c28e-2e23-4deb-b9d5-ea07f07e8d79	X	114426788	114426788	C	T	SNP	RBMXL3	ENST00000424776	human	ensembl	74_37	+1	known	silent	c.2784	p.R928	0.374	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMXL3	HGNC	ENSG00000175718	tier1	-	-	84	0	0.00	43	28	38.89	13	0	0.00	9	6	40.00
PRKACA	0	genome.wustl.edu	37	19	14211650	14211650	+	Missense_Mutation	SNP	A	A	T			TCGA-FX-A76Y-01A-11D-A351-09	TCGA-FX-A76Y-10A-01D-A351-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b20604a-cda0-4e4e-b0fa-a37129cdef5e	ba44c28e-2e23-4deb-b9d5-ea07f07e8d79	19	14211650	14211650	A	T	SNP	PRKACA	ENST00000308677	human	ensembl	74_37	-1	known	missense	c.407	p.I136N	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKACA	HGNC	ENSG00000072062	tier1	-	-	69	0	0.00	58	7	10.77	60	0	0.00	51	4	7.27
USP38	0	genome.wustl.edu	37	4	144107117	144107117	+	Missense_Mutation	SNP	G	G	C			TCGA-FX-A76Y-01A-11D-A351-09	TCGA-FX-A76Y-10A-01D-A351-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	4b20604a-cda0-4e4e-b0fa-a37129cdef5e	ba44c28e-2e23-4deb-b9d5-ea07f07e8d79	4	144107117	144107117	G	C	SNP	USP38	ENST00000307017	human	ensembl	74_37	+1	known	missense	c.514	p.V172L	1.000	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP38	HGNC	ENSG00000170185	tier1	-	-	26	0	0.00	31	4	11.43	122	0	0.00	99	5	4.81
ING1	0	genome.wustl.edu	37	13	111371715	111371715	+	Silent	SNP	G	G	T			TCGA-FX-A76Y-01A-11D-A351-09	TCGA-FX-A76Y-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b20604a-cda0-4e4e-b0fa-a37129cdef5e	ba44c28e-2e23-4deb-b9d5-ea07f07e8d79	13	111371715	111371715	G	T	SNP	ING1	ENST00000375774	human	ensembl	74_37	+1	known	silent	c.705	p.V235	0.688	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	ING1	HGNC	ENSG00000153487	tier1	-	-	73	0	0.00	43	4	8.51	19	0	0.00	2	0	0.00
ENSG00000221388	0	genome.wustl.edu	37	2	213628318	213628325	+	R	DEL	TGTGTGTG	TGTGTGTG	-			TCGA-FX-A76Y-01A-11D-A351-09	TCGA-FX-A76Y-10A-01D-A351-09	TGTGTGTG	TGTGTGTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b20604a-cda0-4e4e-b0fa-a37129cdef5e	ba44c28e-2e23-4deb-b9d5-ea07f07e8d79	2	213628318	213628325	TGTGTGTG	-	DEL	ENSG00000221388	ENST00000408461	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000	-	-	-	no_errors	AC093865.1	Clone_based_ensembl_gene	ENSG00000221388	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
LOC101929847	0	genome.wustl.edu	37	15	84868716	84868729	+	R	DEL	GGGGGGGGAGGGGT	GGGGGGGGAGGGGT	-			TCGA-FX-A76Y-01A-11D-A351-09	TCGA-FX-A76Y-10A-01D-A351-09	GGGGGGGGAGGGGT	GGGGGGGGAGGGGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b20604a-cda0-4e4e-b0fa-a37129cdef5e	ba44c28e-2e23-4deb-b9d5-ea07f07e8d79	15	84868716	84868729	GGGGGGGGAGGGGT	-	DEL	LOC101929847	ENST00000316967	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.370:0.357:0.300:0.305:0.291:0.276:0.262:0.247:0.207:0.187:0.139:0.134:0.116:0.121	-	-	-	no_errors	AC103965.1	Clone_based_vega_gene	ENSG00000225151	tier1			1	0	0.00	1	0	0.00	1	0	0.00	1	0	0.00
PPIAL4G	0	genome.wustl.edu	37	1	143767744	143767744	+	Missense_Mutation	SNP	G	G	T			TCGA-FX-A76Y-01A-11D-A351-09	TCGA-FX-A76Y-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b20604a-cda0-4e4e-b0fa-a37129cdef5e	ba44c28e-2e23-4deb-b9d5-ea07f07e8d79	1	143767744	143767744	G	T	SNP	PPIAL4G	ENST00000419275	human	ensembl	74_37	-1	known	missense	c.105	p.N35K	1.000	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIAL4G	HGNC	ENSG00000236334	tier1	-	-	327	0	0.00	258	85	24.78	2	0	0.00	0	0	0.00
PRKACA	0	genome.wustl.edu	37	19	14202661	14202661	+	R	SNP	G	G	T			TCGA-FX-A76Y-01A-11D-A351-09	TCGA-FX-A76Y-10A-01D-A351-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4b20604a-cda0-4e4e-b0fa-a37129cdef5e	ba44c28e-2e23-4deb-b9d5-ea07f07e8d79	19	14202661	14202661	G	T	SNP	PRKACA	ENST00000350356	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.979	-	-	-	no_errors	PRKACA	HGNC	ENSG00000072062	tier1	-	-	73	0	0.00	48	33	40.74	4	0	0.00	4	2	33.33
