Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
CTTNBP2	0	genome.wustl.edu	37	7	117364695	117364695	+	Missense_Mutation	SNP	C	C	G			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	7	117364695	117364695	C	G	SNP	CTTNBP2	ENST00000160373	human	ensembl	74_37	-1	known	missense	c.4353	p.E1451D	0.743	NULL	pfam_Cortactin-binding_p2_N,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CTTNBP2	HGNC	ENSG00000077063	tier1	-	-	33	0	0.00	31	22	41.51	95	0	0.00	84	37	30.33
SCN9A	0	genome.wustl.edu	37	2	167138319	167138319	+	Splice_Site	SNP	C	C	A			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	2	167138319	167138319	C	A	SNP	SCN9A	ENST00000303354	human	ensembl	74_37	-1	known	splice_site	c.1978-1	e12-1	1.000	-	-	-	no_errors	SCN9A	HGNC	ENSG00000169432	tier1	-	-	35	0	0.00	31	14	31.11	57	0	0.00	29	18	38.30
ABCB1	0	genome.wustl.edu	37	7	87175278	87175278	+	Silent	SNP	G	G	A			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	7	87175278	87175278	G	A	SNP	ABCB1	ENST00000265724	human	ensembl	74_37	-1	known	silent	c.1788	p.D596	0.998	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB1	HGNC	ENSG00000085563	tier1	rs201194764	-	21	0	0.00	19	13	40.62	117	0	0.00	56	50	47.17
OS9	0	genome.wustl.edu	37	12	58112779	58112779	+	Missense_Mutation	SNP	G	G	A			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	12	58112779	58112779	G	A	SNP	OS9	ENST00000315970	human	ensembl	74_37	+1	known	missense	c.1414	p.E472K	0.992	NULL	pfam_PRKCSH,superfamily_Man6P_isomerase_rcpt-bd_dom	-	no_errors	OS9	HGNC	ENSG00000135506	tier1	-	-	23	0	0.00	226	103	31.31	69	0	0.00	572	272	32.23
SHCBP1L	0	genome.wustl.edu	37	1	182908516	182908516	+	Missense_Mutation	SNP	G	G	T			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	1	182908516	182908516	G	T	SNP	SHCBP1L	ENST00000367547	human	ensembl	74_37	-1	known	missense	c.871	p.Q291K	1.000	NULL	superfamily_Pectin_lyase_fold/virulence,smart_Carb-bd_sugar_hydrolysis-dom,smart_PbH1	-	no_errors	SHCBP1L	HGNC	ENSG00000157060	tier1	-	-	65	0	0.00	32	18	36.00	90	0	0.00	57	19	25.00
AFF2	0	genome.wustl.edu	37	X	148037966	148037966	+	Silent	SNP	C	C	T			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	X	148037966	148037966	C	T	SNP	AFF2	ENST00000370460	human	ensembl	74_37	+1	known	silent	c.2391	p.N797	0.004	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966	tier1	-	-	28	0	0.00	21	22	51.16	44	0	0.00	30	21	41.18
REXO1	0	genome.wustl.edu	37	19	1819988	1819988	+	Silent	SNP	C	C	T			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	19	1819988	1819988	C	T	SNP	REXO1	ENST00000170168	human	ensembl	74_37	-1	known	silent	c.2595	p.V865	1.000	NULL	pfam_Exonuclease_RNaseT/D_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	REXO1	HGNC	ENSG00000079313	tier1	-	-	61	0	0.00	406	119	22.62	45	0	0.00	263	72	21.43
ZFHX2	0	genome.wustl.edu	37	14	23991278	23991278	+	Missense_Mutation	SNP	C	C	T			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	14	23991278	23991278	C	T	SNP	ZFHX2	ENST00000419474	human	ensembl	74_37	-1	known	missense	c.7612	p.A2538T	0.986	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX2	HGNC	ENSG00000136367	tier1	-	-	42	0	0.00	33	15	31.25	56	0	0.00	44	13	22.81
LAMB4	0	genome.wustl.edu	37	7	107732113	107732113	+	Silent	SNP	G	G	A			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	7	107732113	107732113	G	A	SNP	LAMB4	ENST00000205386	human	ensembl	74_37	-1	known	silent	c.1659	p.Y553	0.796	smart_EGF_laminin,pfscan_Laminin_IV	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB4	HGNC	ENSG00000091128	tier1	-	-	39	0	0.00	36	6	14.29	81	0	0.00	79	9	10.23
RANBP17	0	genome.wustl.edu	37	5	170336734	170336734	+	Missense_Mutation	SNP	G	G	A			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	5	170336734	170336734	G	A	SNP	RANBP17	ENST00000523189	human	ensembl	74_37	+1	known	missense	c.559	p.D187N	1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	RANBP17	HGNC	ENSG00000204764	tier1	-	-	61	0	0.00	60	6	9.09	84	0	0.00	45	9	16.67
ENSG00000226113	0	genome.wustl.edu	37	10	38599071	38599071	+	R	SNP	A	A	T			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	10	38599071	38599071	A	T	SNP	ENSG00000226113	ENST00000450980	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-672F9.1	Clone_based_vega_gene	ENSG00000226113	tier1	-	-	68	0	0.00	58	21	26.58	73	0	0.00	70	15	17.65
INTS10	0	genome.wustl.edu	37	8	19677110	19677110	+	Missense_Mutation	SNP	T	T	C			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	8	19677110	19677110	T	C	SNP	INTS10	ENST00000397977	human	ensembl	74_37	+1	known	missense	c.224	p.V75A	1.000	NULL	NULL	-	no_errors	INTS10	HGNC	ENSG00000104613	tier1	-	-	40	0	0.00	23	11	32.35	79	0	0.00	49	18	26.87
ZNHIT2	0	genome.wustl.edu	37	11	64884315	64884315	+	Silent	SNP	G	G	A			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	11	64884315	64884315	G	A	SNP	ZNHIT2	ENST00000310597	human	ensembl	74_37	-1	known	silent	c.811	p.L271	1.000	NULL	pfam_Znf_HIT,pfscan_Znf_HIT	-	no_errors	ZNHIT2	HGNC	ENSG00000174276	tier1	-	-	28	0	0.00	34	15	30.61	8	0	0.00	11	4	26.67
MYH13	0	genome.wustl.edu	37	17	10267836	10267836	+	Silent	SNP	G	G	A			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	17	10267836	10267836	G	A	SNP	MYH13	ENST00000252172	human	ensembl	74_37	-1	known	silent	c.12	p.D4	0.658	NULL	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH13	HGNC	ENSG00000006788	tier1	-	-	62	0	0.00	42	30	41.67	62	1	1.59	38	35	47.95
CSNK1G3	0	genome.wustl.edu	37	5	122881404	122881404	+	Missense_Mutation	SNP	C	C	G			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	5	122881404	122881404	C	G	SNP	CSNK1G3	ENST00000360683	human	ensembl	74_37	+1	known	missense	c.47	p.A16G	1.000	NULL	pfam_Prot_kinase_dom,pfam_Casein_kinase-1_gamma_C,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CSNK1G3	HGNC	ENSG00000151292	tier1	-	-	52	0	0.00	64	16	20.00	104	0	0.00	62	20	24.39
ZC3H12A	0	genome.wustl.edu	37	1	37947330	37947330	+	Missense_Mutation	SNP	G	G	T			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	1	37947330	37947330	G	T	SNP	ZC3H12A	ENST00000373087	human	ensembl	74_37	+1	known	missense	c.712	p.G238W	0.999	pfam_RNase_Zc3h12	pfam_RNase_Zc3h12	-	no_errors	ZC3H12A	HGNC	ENSG00000163874	tier1	-	-	49	0	0.00	58	34	36.96	89	1	1.11	83	37	30.83
TMEM233	0	genome.wustl.edu	37	12	120031683	120031683	+	Missense_Mutation	SNP	C	C	G			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	12	120031683	120031683	C	G	SNP	TMEM233	ENST00000426426	human	ensembl	74_37	+1	known	missense	c.30	p.F10L	0.992	NULL	pfam_CD225/Dispanin_fam	-	no_errors	TMEM233	HGNC	ENSG00000224982	tier1	-	-	44	0	0.00	74	15	16.85	19	0	0.00	35	5	12.50
SP1	0	genome.wustl.edu	37	12	53777058	53777058	+	Missense_Mutation	SNP	G	G	T			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	12	53777058	53777058	G	T	SNP	SP1	ENST00000327443	human	ensembl	74_37	+1	known	missense	c.1327	p.V443F	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP1	HGNC	ENSG00000185591	tier1	-	-	37	0	0.00	18	18	50.00	116	0	0.00	72	61	45.86
PRKDC	0	genome.wustl.edu	37	8	48845610	48845610	+	Silent	SNP	T	T	G			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	8	48845610	48845610	T	G	SNP	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	silent	c.1746	p.T582	0.723	superfamily_ARM-type_fold	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	tier1	-	-	36	0	0.00	46	10	17.86	92	0	0.00	80	22	21.57
PTPRVP	0	genome.wustl.edu	37	1	202155418	202155418	+	R	SNP	G	G	C			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	1	202155418	202155418	G	C	SNP	PTPRVP	ENST00000482597	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.568	-	-	-	no_errors	PTPRVP	HGNC	ENSG00000243323	tier1	-	-	26	0	0.00	14	10	41.67	43	0	0.00	31	10	24.39
OS9	0	genome.wustl.edu	37	12	58113952	58113952	+	Silent	SNP	G	G	C			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	12	58113952	58113952	G	C	SNP	OS9	ENST00000315970	human	ensembl	74_37	+1	known	silent	c.1671	p.L557	1.000	NULL	pfam_PRKCSH,superfamily_Man6P_isomerase_rcpt-bd_dom	-	no_errors	OS9	HGNC	ENSG00000135506	tier1	-	-	37	0	0.00	371	266	41.76	50	0	0.00	465	256	35.46
MAPK9	0	genome.wustl.edu	37	5	179674413	179674413	+	Silent	SNP	G	G	A			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	5	179674413	179674413	G	A	SNP	MAPK9	ENST00000425491	human	ensembl	74_37	-1	known	silent	c.714	p.P238	0.944	smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_MAPK_JNK	-	no_errors	MAPK9	HGNC	ENSG00000050748	tier1	rs200094588	GMAF=0.0005	59	0	0.00	44	33	42.86	74	0	0.00	40	44	52.38
OS9	0	genome.wustl.edu	37	12	58111971	58111971	+	Missense_Mutation	SNP	G	G	A			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	12	58111971	58111971	G	A	SNP	OS9	ENST00000315970	human	ensembl	74_37	+1	known	missense	c.1177	p.A393T	0.000	NULL	pfam_PRKCSH,superfamily_Man6P_isomerase_rcpt-bd_dom	-	no_errors	OS9	HGNC	ENSG00000135506	tier1	-	-	13	0	0.00	154	92	37.40	63	0	0.00	447	282	38.68
KDM4B	0	genome.wustl.edu	37	19	5133999	5133999	+	Missense_Mutation	SNP	G	G	A			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	19	5133999	5133999	G	A	SNP	KDM4B	ENST00000159111	human	ensembl	74_37	+1	known	missense	c.2012	p.R671K	1.000	NULL	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4B	HGNC	ENSG00000127663	tier1	-	-	74	0	0.00	65	36	35.64	10	0	0.00	14	7	33.33
TUB	0	genome.wustl.edu	37	11	8119343	8119343	+	Missense_Mutation	SNP	G	G	C			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	11	8119343	8119343	G	C	SNP	TUB	ENST00000305253	human	ensembl	74_37	+1	known	missense	c.1133	p.R378P	1.000	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_C	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_N,prints_Tubby_C	-	no_errors	TUB	HGNC	ENSG00000166402	tier1	-	-	43	0	0.00	28	18	39.13	103	0	0.00	55	24	30.38
HSP90AA1	0	genome.wustl.edu	37	14	102548534	102548534	+	Missense_Mutation	SNP	T	T	G			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	14	102548534	102548534	T	G	SNP	HSP90AA1	ENST00000334701	human	ensembl	74_37	-1	known	missense	c.2369	p.E790A	1.000	pirsf_Hsp90_fam,pfam_Hsp90_fam	pirsf_Hsp90_fam,pfam_Hsp90_fam,pfam_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,prints_Hsp90_N	-	no_errors	HSP90AA1	HGNC	ENSG00000080824	tier1	-	-	93	0	0.00	72	47	39.50	58	0	0.00	38	36	48.65
ARID2	0	genome.wustl.edu	37	12	46244344	46244344	+	Missense_Mutation	SNP	C	C	T			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	12	46244344	46244344	C	T	SNP	ARID2	ENST00000334344	human	ensembl	74_37	+1	known	missense	c.2438	p.S813F	1.000	NULL	pfam_ARID/BRIGHT_D-bd,pfam_D-bd_RFX,superfamily_ARID/BRIGHT_D-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_D-bd,pfscan_ARID/BRIGHT_D-bd	-	no_errors	ARID2	HGNC	ENSG00000189079	tier1	-	-	39	0	0.00	46	14	23.33	96	0	0.00	53	17	24.29
MTND1P15	0	genome.wustl.edu	37	17	22024142	22024142	+	R	SNP	C	C	T			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	17	22024142	22024142	C	T	SNP	MTND1P15	ENST00000579693	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.125	-	-	-	no_errors	MTND1P15	HGNC	ENSG00000264168	tier1	-	-	16	0	0.00	19	8	29.63	112	0	0.00	91	31	25.41
OS9	0	genome.wustl.edu	37	12	58111997	58111997	+	Silent	SNP	G	G	A			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	12	58111997	58111997	G	A	SNP	OS9	ENST00000315970	human	ensembl	74_37	+1	known	silent	c.1203	p.E401	0.006	NULL	pfam_PRKCSH,superfamily_Man6P_isomerase_rcpt-bd_dom	-	no_errors	OS9	HGNC	ENSG00000135506	tier1	-	-	15	0	0.00	173	103	37.32	64	0	0.00	472	257	35.16
C16orf58	0	genome.wustl.edu	37	16	31512021	31512021	+	Nonsense_Mutation	SNP	A	A	T			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	16	31512021	31512021	A	T	SNP	C16orf58	ENST00000565128	human	ensembl	74_37	-1	known	nonsense	c.332	p.L111*	1.000	NULL	pfam_RUS2/WXR1	-	no_errors	C16orf58	HGNC	ENSG00000140688	tier1	-	-	25	0	0.00	10	16	61.54	42	0	0.00	18	35	66.04
FMN1	0	genome.wustl.edu	37	15	33359026	33359026	+	Missense_Mutation	SNP	G	G	C			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	15	33359026	33359026	G	C	SNP	FMN1	ENST00000334528	human	ensembl	74_37	-1	known	missense	c.1060	p.P354A	0.997	NULL	pfam_FH2_Formin,smart_FH2_Formin,prints_Formin_Cappuccino_subfam	-	no_errors	FMN1	HGNC	ENSG00000248905	tier1	-	-	64	0	0.00	44	14	24.14	58	0	0.00	28	14	33.33
MMD2	0	genome.wustl.edu	37	7	4959908	4959908	+	Missense_Mutation	SNP	C	C	T			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	7	4959908	4959908	C	T	SNP	MMD2	ENST00000404774	human	ensembl	74_37	-1	known	missense	c.184	p.D62N	0.991	pfam_HlyIII-related	pfam_HlyIII-related	-	no_errors	MMD2	HGNC	ENSG00000136297	tier1	-	-	53	0	0.00	60	10	14.08	51	0	0.00	54	11	16.92
LSM14A	0	genome.wustl.edu	37	19	34685495	34685495	+	Missense_Mutation	SNP	T	T	G			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	19	34685495	34685495	T	G	SNP	LSM14A	ENST00000433627	human	ensembl	74_37	+1	known	missense	c.234	p.C78W	1.000	superfamily_LSM_dom	pfam_FDF_dom,superfamily_LSM_dom	-	no_errors	LSM14A	HGNC	ENSG00000257103	tier1	-	-	65	0	0.00	68	22	24.44	132	0	0.00	100	34	25.37
TTN	0	genome.wustl.edu	37	2	179408710	179408710	+	Missense_Mutation	SNP	T	T	A			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	2	179408710	179408710	T	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.88457	p.D29486V	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657	tier1	-	-	58	0	0.00	28	37	56.06	83	0	0.00	26	22	45.83
SARS	0	genome.wustl.edu	37	1	109778719	109778719	+	Missense_Mutation	SNP	A	A	G			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	1	109778719	109778719	A	G	SNP	SARS	ENST00000369923	human	ensembl	74_37	+1	known	missense	c.1090	p.I364V	1.000	pfam_aa-tR-synt_IIb_cons-dom,pirsf_Ser-tR-ligase_type_1,pfscan_aa-tR-synth_II,prints_Ser-tR-ligase_type_1,tigrfam_Ser-tR-ligase_type_1	pfam_aa-tR-synt_IIb_cons-dom,pfam_Ser-tR-synth_1_N,superfamily_tR-bd_arm,pirsf_Ser-tR-ligase_type_1,pfscan_aa-tR-synth_II,prints_Ser-tR-ligase_type_1,tigrfam_Ser-tR-ligase_type_1	-	no_errors	SARS	HGNC	ENSG00000031698	tier1	-	-	59	0	0.00	42	14	25.00	88	0	0.00	84	19	18.45
GAS2	0	genome.wustl.edu	37	11	22770671	22770671	+	Missense_Mutation	SNP	G	G	T			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	11	22770671	22770671	G	T	SNP	GAS2	ENST00000278187	human	ensembl	74_37	+1	known	missense	c.479	p.G160V	1.000	superfamily_CH-domain	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2	HGNC	ENSG00000148935	tier1	-	-	47	0	0.00	34	12	26.09	97	0	0.00	69	14	16.87
CSMD3	0	genome.wustl.edu	37	8	113668387	113668387	+	Silent	SNP	A	A	G			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	8	113668387	113668387	A	G	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	silent	c.3000	p.Y1000	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	tier1	-	-	30	0	0.00	13	11	45.83	66	0	0.00	23	31	57.41
CPA6	0	genome.wustl.edu	37	8	68423882	68423882	+	Missense_Mutation	SNP	A	A	G			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	8	68423882	68423882	A	G	SNP	CPA6	ENST00000297770	human	ensembl	74_37	-1	known	missense	c.326	p.I109T	1.000	pfam_Prot_inh_M14A,superfamily_Prot_inh_propept	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA6	HGNC	ENSG00000165078	tier1	rs151119622	GMAF=0.0005	21	0	0.00	11	15	57.69	66	0	0.00	27	33	54.10
CAPS2	0	genome.wustl.edu	37	12	75687052	75687052	+	Missense_Mutation	SNP	A	A	T			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	12	75687052	75687052	A	T	SNP	CAPS2	ENST00000409445	human	ensembl	74_37	-1	known	missense	c.1197	p.D399E	0.998	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CAPS2	HGNC	ENSG00000180881	tier1	-	-	51	0	0.00	41	15	26.32	56	0	0.00	77	14	15.38
SGSH	0	genome.wustl.edu	37	17	78184600	78184602	+	In_Frame_Del	DEL	ACG	ACG	-			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	ACG	ACG	ACG	-	ACG	ACG	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	17	78184600	78184602	ACG	-	DEL	SGSH	ENST00000326317	human	ensembl	74_37	-1	known	in_frame_del	c.1160_1158	p.V387in_frame_del	0.995:0.845:0.006	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	SGSH	HGNC	ENSG00000181523	tier1			25	0	0.00	45	16	26.23	66	0	0.00	80	20	20.00
CCDC135	0	genome.wustl.edu	37	16	57760001	57760001	+	Missense_Mutation	SNP	C	C	T			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	16	57760001	57760001	C	T	SNP	CCDC135	ENST00000360716	human	ensembl	74_37	+1	known	missense	c.1780	p.R594C	0.997	NULL	NULL	-	no_errors	CCDC135	HGNC	ENSG00000159625	tier1	-	-	44	0	0.00	13	15	53.57	31	0	0.00	8	9	52.94
H6PD	0	genome.wustl.edu	37	1	9322245	9322245	+	Silent	SNP	G	G	C			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	1	9322245	9322245	G	C	SNP	H6PD	ENST00000377403	human	ensembl	74_37	+1	known	silent	c.873	p.R291	0.429	pfam_G6P_DH_C	pfam_G6P_DH_C,pfam_G6P_DH_D-bd,prints_G6P_DH,tigrfam_6-phosphogluconolactonase_DevB	-	no_errors	H6PD	HGNC	ENSG00000049239	tier1	-	-	41	0	0.00	29	14	32.56	15	0	0.00	9	17	65.38
H6PD	0	genome.wustl.edu	37	1	9322246	9322246	+	Missense_Mutation	SNP	C	C	A			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	1	9322246	9322246	C	A	SNP	H6PD	ENST00000377403	human	ensembl	74_37	+1	known	missense	c.874	p.H292N	0.489	pfam_G6P_DH_C	pfam_G6P_DH_C,pfam_G6P_DH_D-bd,prints_G6P_DH,tigrfam_6-phosphogluconolactonase_DevB	-	no_errors	H6PD	HGNC	ENSG00000049239	tier1	-	-	41	0	0.00	30	14	31.82	15	0	0.00	8	18	69.23
HDAC6	0	genome.wustl.edu	37	X	48682631	48682631	+	Missense_Mutation	SNP	G	G	T			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	X	48682631	48682631	G	T	SNP	HDAC6	ENST00000444343	human	ensembl	74_37	+1	known	missense	c.3548	p.G1183V	0.932	pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP	pfam_His_deacetylse_dom,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,prints_His_deacetylse	-	no_errors	HDAC6	HGNC	ENSG00000094631	tier1	-	-	18	0	0.00	1	26	96.30	52	0	0.00	9	44	83.02
ABCB5	0	genome.wustl.edu	37	7	20725334	20725334	+	Missense_Mutation	SNP	G	G	A			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	7	20725334	20725334	G	A	SNP	ABCB5	ENST00000258738	human	ensembl	74_37	+1	known	missense	c.550	p.D184N	0.981	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB5	HGNC	ENSG00000004846	tier1	-	-	47	0	0.00	46	10	17.86	51	0	0.00	57	6	9.52
MAP2K3	0	genome.wustl.edu	37	17	21204268	21204268	+	Missense_Mutation	SNP	T	T	C			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	17	21204268	21204268	T	C	SNP	MAP2K3	ENST00000342679	human	ensembl	74_37	+1	known	missense	c.362	p.F121S	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP2K3	HGNC	ENSG00000034152	tier1	-	-	46	0	0.00	76	10	11.63	52	0	0.00	78	4	4.88
SAMHD1	0	genome.wustl.edu	37	20	35545145	35545145	+	Missense_Mutation	SNP	G	G	A			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	20	35545145	35545145	G	A	SNP	SAMHD1	ENST00000262878	human	ensembl	74_37	-1	known	missense	c.1042	p.R348C	0.998	NULL	pfam_HD_domain,pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,smart_HD/PDEase_dom,pfscan_SAM	-	no_errors	SAMHD1	HGNC	ENSG00000101347	tier1	-	-	37	0	0.00	48	10	17.24	85	1	1.16	135	10	6.90
TAPT1	0	genome.wustl.edu	37	4	16165055	16165055	+	Frame_Shift_Del	DEL	A	A	-			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	4	16165055	16165055	A	-	DEL	TAPT1	ENST00000405303	human	ensembl	74_37	-1	known	frame_shift_del	c.1580	p.L527fs	1.000	NULL	pfam_Membrane_Tatp1/CMV_rcpt	-	no_errors	TAPT1	HGNC	ENSG00000169762	tier1			42	0	0.00	66	7	9.59	98	0	0.00	135	11	7.53
ACADVL	0	genome.wustl.edu	37	17	7123240	7123241	+	R	INS	-	-	GGGCGTGCCGGACGC			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	17	7123240	7123241	-	GGGCGTGCCGGACGC	INS	ACADVL	ENST00000577857	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	ACADVL	HGNC	ENSG00000072778	tier1			5	0	0.00	2	0	0.00	5	0	0.00	2	0	0.00
APCDD1	0	genome.wustl.edu	37	18	10471744	10471744	+	Missense_Mutation	SNP	T	T	G			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	18	10471744	10471744	T	G	SNP	APCDD1	ENST00000355285	human	ensembl	74_37	+1	known	missense	c.460	p.C154G	0.997	NULL	NULL	-	no_errors	APCDD1	HGNC	ENSG00000154856	tier1	-	-	43	0	0.00	35	8	18.60	8	0	0.00	8	1	11.11
PPP1R16A	0	genome.wustl.edu	37	8	145724311	145724311	+	Missense_Mutation	SNP	G	G	T			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	8	145724311	145724311	G	T	SNP	PPP1R16A	ENST00000292539	human	ensembl	74_37	+1	known	missense	c.343	p.D115Y	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_Pase-1_reg_su_16AB_euk,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Ankyrin_rpt,pirsf_Pase-1_reg_su_16AB_euk,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	PPP1R16A	HGNC	ENSG00000160972	tier1	-	-	44	0	0.00	15	3	16.67	10	0	0.00	3	0	0.00
ENSG00000266060	0	genome.wustl.edu	37	9	137741779	137741779	+	R	SNP	G	G	T			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	9	137741779	137741779	G	T	SNP	ENSG00000266060	ENST00000583817	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	AL603650.4	Clone_based_ensembl_gene	ENSG00000266060	tier1	-	-	27	0	0.00	7	7	50.00	0	0	0.00	0	0	0.00
HIST2H2BE	0	genome.wustl.edu	37	1	149857909	149857909	+	Missense_Mutation	SNP	C	C	G			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	1	149857909	149857909	C	G	SNP	HIST2H2BE	ENST00000369155	human	ensembl	74_37	-1	known	missense	c.282	p.E94D	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST2H2BE	HGNC	ENSG00000184678	tier1	-	-	88	0	0.00	68	10	12.82	0	0	0.00	2	0	0.00
LOC100505679	0	genome.wustl.edu	37	15	84850838	84850838	+	Silent	SNP	G	G	A			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	15	84850838	84850838	G	A	SNP	LOC100505679	ENST00000558195	human	ensembl	74_37	+1	putative	silent	c.339	p.V113	0.990	NULL	NULL	-	no_errors	RP11-182J1.16	Clone_based_vega_gene	ENSG00000259511	tier1	-	-	36	0	0.00	12	3	20.00	0	0	0.00	0	0	0.00
LOC101927345	0	genome.wustl.edu	37	1	143378256	143378256	+	R	SNP	A	A	G			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	1	143378256	143378256	A	G	SNP	LOC101927345	ENST00000428624	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.450	-	-	-	no_errors	RP11-435B5.5	Clone_based_vega_gene	ENSG00000238261	tier1	-	-	184	1	0.54	113	40	26.14	0	0	0.00	0	1	100.00
MT-RNR1	0	genome.wustl.edu	37	MT	834	834	+	R	SNP	G	G	A			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	MT	834	834	G	A	SNP	MT-RNR1	ENST00000389680	human	ensembl	74_37	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	MT-RNR1	HGNC	ENSG00000211459	tier1	-	-	139	0	0.00	8	28	77.78	3	0	0.00	0	1	100.00
NBPF10	0	genome.wustl.edu	37	1	145302775	145302775	+	Missense_Mutation	SNP	T	T	G			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	1	145302775	145302775	T	G	SNP	NBPF10	ENST00000342960	human	ensembl	74_37	+1	known	missense	c.1213	p.Y405D	0.000	NULL	pfam_NBPF_dom	-	no_errors	NBPF10	HGNC	ENSG00000163386	tier1	-	-	102	0	0.00	62	13	17.33	0	0	0.00	0	0	0.00
RGPD3	0	genome.wustl.edu	37	2	107068731	107068731	+	Missense_Mutation	SNP	C	C	T			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	2	107068731	107068731	C	T	SNP	RGPD3	ENST00000304514	human	ensembl	74_37	-1	known	missense	c.712	p.A238T	0.999	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD3	HGNC	ENSG00000153165	tier1	rs200225138	-	23	0	0.00	35	8	18.60	0	0	0.00	0	0	0.00
POTEG	0	genome.wustl.edu	37	14	19553472	19553472	+	Missense_Mutation	SNP	G	G	A			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	14	19553472	19553472	G	A	SNP	POTEG	ENST00000409832	human	ensembl	74_37	+1	known	missense	c.56	p.G19D	0.007	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEG	HGNC	ENSG00000222036	tier1	-	-	97	0	0.00	114	22	16.18	34	0	0.00	31	3	8.82
KAZN	0	genome.wustl.edu	37	1	15420846	15420846	+	Missense_Mutation	SNP	G	G	A			TCGA-HB-A3YV-01A-11D-A24N-09	TCGA-HB-A3YV-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0539c9cf-9cba-4257-b3e7-365a4b71c8fd	ea3ed74e-abbc-4b2b-915f-e90ad2399915	1	15420846	15420846	G	A	SNP	KAZN	ENST00000376030	human	ensembl	74_37	+1	known	missense	c.1393	p.V465I	1.000	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	KAZN	HGNC	ENSG00000189337	tier1	rs200509529	-	61	0	0.00	101	29	22.31	39	0	0.00	24	2	7.69
