Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
AZGP1	0	genome.wustl.edu	37	7	99564556	99564556	+	R	SNP	C	C	G			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	7	99564556	99564556	C	G	SNP	AZGP1	ENST00000483612	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	AZGP1	HGNC	ENSG00000160862	tier1	-	-	36	0	0.00	12	18	60.00	56	1	1.75	15	22	59.46
GABRG3	0	genome.wustl.edu	37	15	27777805	27777805	+	Silent	SNP	C	C	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	15	27777805	27777805	C	T	SNP	GABRG3	ENST00000333743	human	ensembl	74_37	+1	known	silent	c.1182	p.S394	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg3_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg3_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG3	HGNC	ENSG00000182256	tier1	-	-	72	0	0.00	36	67	65.05	223	0	0.00	66	73	52.52
NPC1L1	0	genome.wustl.edu	37	7	44560685	44560685	+	Missense_Mutation	SNP	T	T	C			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	7	44560685	44560685	T	C	SNP	NPC1L1	ENST00000289547	human	ensembl	74_37	-1	known	missense	c.2986	p.I996V	0.000	NULL	pfam_Patched,pfscan_SSD	-	no_errors	NPC1L1	HGNC	ENSG00000015520	tier1	-	-	26	0	0.00	22	16	42.11	106	0	0.00	47	28	37.33
OR4M1	0	genome.wustl.edu	37	14	20249229	20249229	+	Missense_Mutation	SNP	G	G	C			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	14	20249229	20249229	G	C	SNP	OR4M1	ENST00000315957	human	ensembl	74_37	+1	known	missense	c.748	p.V250L	0.998	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4M1	HGNC	ENSG00000176299	tier1	-	-	173	0	0.00	141	38	21.23	328	0	0.00	101	26	20.31
ATG2B	0	genome.wustl.edu	37	14	96784117	96784117	+	Silent	SNP	G	G	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	14	96784117	96784117	G	A	SNP	ATG2B	ENST00000359933	human	ensembl	74_37	-1	known	silent	c.2955	p.G985	0.301	NULL	pfam_Autophagy-rel_C	-	no_errors	ATG2B	HGNC	ENSG00000066739	tier1	-	-	107	0	0.00	41	44	51.76	158	1	0.63	40	33	45.21
FAT2	0	genome.wustl.edu	37	5	150946545	150946545	+	Missense_Mutation	SNP	A	A	C			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	5	150946545	150946545	A	C	SNP	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	missense	c.1948	p.S650A	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	tier1	-	-	47	0	0.00	15	15	50.00	237	0	0.00	62	63	50.40
RSPH4A	0	genome.wustl.edu	37	6	116949179	116949179	+	Missense_Mutation	SNP	C	C	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	6	116949179	116949179	C	T	SNP	RSPH4A	ENST00000229554	human	ensembl	74_37	+1	known	missense	c.1309	p.P437S	1.000	pfam_Radial_spoke	pfam_Radial_spoke	-	no_errors	RSPH4A	HGNC	ENSG00000111834	tier1	-	-	74	0	0.00	40	45	52.94	227	0	0.00	49	66	57.39
MYO9A	0	genome.wustl.edu	37	15	72190133	72190133	+	Missense_Mutation	SNP	G	G	C			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	15	72190133	72190133	G	C	SNP	MYO9A	ENST00000424560	human	ensembl	74_37	-1	known	missense	c.4711	p.L1571V	0.012	NULL	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9A	HGNC	ENSG00000066933	tier1	-	-	45	0	0.00	47	18	27.69	154	0	0.00	91	41	30.83
ADAD2	0	genome.wustl.edu	37	16	84230276	84230276	+	Missense_Mutation	SNP	G	G	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	16	84230276	84230276	G	A	SNP	ADAD2	ENST00000268624	human	ensembl	74_37	+1	known	missense	c.1796	p.R599H	1.000	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,pfam_dsR-bd_dom,smart_A_deamin,pfscan_dsR-bd_dom,pfscan_A_deamin	-	no_errors	ADAD2	HGNC	ENSG00000140955	tier1	-	-	35	0	0.00	18	20	52.63	101	0	0.00	34	33	49.25
MARS2	0	genome.wustl.edu	37	2	198571474	198571474	+	Missense_Mutation	SNP	C	C	G			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	2	198571474	198571474	C	G	SNP	MARS2	ENST00000282276	human	ensembl	74_37	+1	known	missense	c.1345	p.L449V	0.965	superfamily_tRsynth_1a_anticodon-bd,tigrfam_Met-tR_synth	pfam_Methionyl/Leucyl_tR_Synth,pfam_aa-tR-synth_Ia,pfam_Cys-tR/MSH_ligase,superfamily_tRsynth_1a_anticodon-bd,prints_Met-tR_synth,tigrfam_Met-tR_synth	-	no_errors	MARS2	HGNC	ENSG00000247626	tier1	-	-	28	0	0.00	16	18	52.94	96	0	0.00	37	35	48.61
ISM1	0	genome.wustl.edu	37	20	13279761	13279761	+	Silent	SNP	C	C	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	20	13279761	13279761	C	T	SNP	ISM1	ENST00000262487	human	ensembl	74_37	+1	known	silent	c.1050	p.D350	0.980	pfam_AMOP,smart_AMOP,pfscan_AMOP	pfam_AMOP,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_AMOP,pfscan_AMOP,pfscan_Thrombospondin_1_rpt	-	no_errors	ISM1	HGNC	ENSG00000101230	tier1	-	-	31	0	0.00	16	17	51.52	60	0	0.00	10	9	47.37
ERVMER34-1	0	genome.wustl.edu	37	4	53610776	53610776	+	Silent	SNP	C	C	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	4	53610776	53610776	C	T	SNP	ERVMER34-1	ENST00000440542	human	ensembl	74_37	-1	known	silent	c.912	p.G304	0.006	NULL	pfam_TLV/ENV_coat_polyprotein	-	no_errors	ERVMER34-1	HGNC	ENSG00000226887	tier1	-	-	59	0	0.00	29	25	46.30	261	0	0.00	80	76	48.72
DNMT1	0	genome.wustl.edu	37	19	10287970	10287970	+	Silent	SNP	C	C	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	19	10287970	10287970	C	T	SNP	DNMT1	ENST00000359526	human	ensembl	74_37	-1	known	silent	c.567	p.K189	0.692	pirsf_D_C5-MeTrfase_1_euk	pirsf_D_C5-MeTrfase_1_euk,pfam_C5_MeTfrase,pfam_BAH_dom,pfam_Cytosine_MeTrfase1_RFD,pfam_DMAP1-bd,pfam_Znf_CXXC,smart_BAH_dom,prints_C5_MeTfrase,pfscan_BAH_dom,pfscan_Znf_CXXC	-	no_errors	DNMT1	HGNC	ENSG00000130816	tier1	-	-	82	0	0.00	81	32	28.32	221	0	0.00	114	64	35.96
IFNLR1	0	genome.wustl.edu	37	1	24484288	24484288	+	Missense_Mutation	SNP	T	T	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	1	24484288	24484288	T	A	SNP	IFNLR1	ENST00000327535	human	ensembl	74_37	-1	known	missense	c.895	p.T299S	0.104	NULL	superfamily_Fibronectin_type3	-	no_errors	IFNLR1	HGNC	ENSG00000185436	tier1	-	-	55	0	0.00	33	22	40.00	188	0	0.00	67	53	44.17
ENSG00000270012	0	genome.wustl.edu	37	X	49130125	49130125	+	R	SNP	G	G	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	X	49130125	49130125	G	T	SNP	ENSG00000270012	ENST00000602455	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.891	-	-	-	no_errors	LL0XNC01-7P3.1	Clone_based_vega_gene	ENSG00000270012	tier1	-	-	17	0	0.00	10	7	41.18	177	0	0.00	55	28	33.73
TRIML2	0	genome.wustl.edu	37	4	189012788	189012788	+	Silent	SNP	A	A	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	4	189012788	189012788	A	T	SNP	TRIML2	ENST00000512729	human	ensembl	74_37	-1	known	silent	c.903	p.T301	0.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	-	no_errors	TRIML2	HGNC	ENSG00000179046	tier1	-	-	43	0	0.00	18	16	47.06	132	0	0.00	34	30	46.15
ADAMTS12	0	genome.wustl.edu	37	5	33561192	33561192	+	Missense_Mutation	SNP	G	G	C			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	5	33561192	33561192	G	C	SNP	ADAMTS12	ENST00000504830	human	ensembl	74_37	-1	known	missense	c.4065	p.D1355E	0.998	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS12	HGNC	ENSG00000151388	tier1	-	-	77	0	0.00	29	37	56.06	147	0	0.00	53	43	44.33
AKAP11	0	genome.wustl.edu	37	13	42891697	42891697	+	Missense_Mutation	SNP	C	C	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	13	42891697	42891697	C	T	SNP	AKAP11	ENST00000025301	human	ensembl	74_37	+1	known	missense	c.5438	p.T1813M	0.000	NULL	NULL	-	no_errors	AKAP11	HGNC	ENSG00000023516	tier1	-	-	47	0	0.00	46	7	13.21	212	0	0.00	94	20	17.54
TSHZ1	0	genome.wustl.edu	37	18	72998202	72998202	+	Silent	SNP	C	C	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	18	72998202	72998202	C	T	SNP	TSHZ1	ENST00000580243	human	ensembl	74_37	+1	known	silent	c.840	p.S280	0.999	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ1	HGNC	ENSG00000179981	tier1	-	-	42	0	0.00	27	33	55.00	99	0	0.00	40	34	45.95
NDST3	0	genome.wustl.edu	37	4	119154221	119154221	+	Missense_Mutation	SNP	C	C	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	4	119154221	119154221	C	T	SNP	NDST3	ENST00000296499	human	ensembl	74_37	+1	known	missense	c.1874	p.S625F	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	NDST3	HGNC	ENSG00000164100	tier1	-	-	108	0	0.00	60	39	39.39	311	0	0.00	68	63	48.09
ITGB7	0	genome.wustl.edu	37	12	53589909	53589909	+	Silent	SNP	G	G	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	12	53589909	53589909	G	A	SNP	ITGB7	ENST00000267082	human	ensembl	74_37	-1	known	silent	c.891	p.D297	0.990	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N,prints_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt_dom,pfam_EGF_extracell,superfamily_Plexin-like_fold,superfamily_Integrin_bsu_tail,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB7	HGNC	ENSG00000139626	tier1	-	-	51	0	0.00	24	32	57.14	163	0	0.00	49	45	47.87
BCL2L12	0	genome.wustl.edu	37	19	50169166	50169166	+	Missense_Mutation	SNP	T	T	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	19	50169166	50169166	T	A	SNP	BCL2L12	ENST00000246785	human	ensembl	74_37	+1	known	missense	c.86	p.I29N	0.888	NULL	NULL	-	no_errors	BCL2L12	HGNC	ENSG00000126453	tier1	-	-	54	0	0.00	61	42	40.78	113	0	0.00	38	19	33.33
ECE2	0	genome.wustl.edu	37	3	184009139	184009139	+	Missense_Mutation	SNP	A	A	C			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	3	184009139	184009139	A	C	SNP	ECE2	ENST00000402825	human	ensembl	74_37	+1	known	missense	c.2387	p.K796T	0.106	pfam_Peptidase_M13_C	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,pfam_Methyltransf_11,prints_Peptidase_M13_C	-	no_errors	ECE2	HGNC	ENSG00000145194	tier1	-	-	54	0	0.00	22	21	48.84	91	0	0.00	27	21	43.75
ELMO1	0	genome.wustl.edu	37	7	36895294	36895295	+	Frame_Shift_Ins	INS	-	-	G			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	-	-	-	G	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	7	36895294	36895295	-	G	INS	ELMO1	ENST00000310758	human	ensembl	74_37	-1	known	frame_shift_ins	c.2046_2045	p.R683fs	0.017:0.999	NULL	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO1	HGNC	ENSG00000155849	tier1			37	0	0.00	18	17	48.57	126	0	0.00	36	19	34.55
FAM230C	0	genome.wustl.edu	37	22	21663891	21663891	+	R	SNP	T	T	C			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	22	21663891	21663891	T	C	SNP	FAM230C	ENST00000436681	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.411	-	-	-	no_errors	KB-1183D5.13	Clone_based_vega_gene	ENSG00000206142	tier1	-	-	63	0	0.00	1	8	88.89	7	0	0.00	0	2	100.00
HMGB1P5	0	genome.wustl.edu	37	3	22424060	22424060	+	R	SNP	G	G	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	3	22424060	22424060	G	A	SNP	HMGB1P5	ENST00000451497	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HMGB1P5	HGNC	ENSG00000132967	tier1	-	-	51	0	0.00	30	32	51.61	17	0	0.00	3	7	70.00
LENG8	0	genome.wustl.edu	37	19	54967914	54967914	+	Silent	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	19	54967914	54967914	C	A	SNP	LENG8	ENST00000326764	human	ensembl	74_37	+1	known	silent	c.1545	p.R515	1.000	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	LENG8	HGNC	ENSG00000167615	tier1	-	-	51	0	0.00	25	28	52.83	13	0	0.00	3	7	70.00
PLD4	0	genome.wustl.edu	37	14	105394089	105394089	+	Missense_Mutation	SNP	C	C	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	14	105394089	105394089	C	T	SNP	PLD4	ENST00000392593	human	ensembl	74_37	+1	known	missense	c.170	p.P57L	0.000	NULL	pfam_PLipase_D/transphosphatidylase,smart_PLipase_D/transphosphatidylase,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD4	HGNC	ENSG00000166428	tier1	-	-	92	0	0.00	59	46	43.81	28	0	0.00	7	4	33.33
CASZ1	0	genome.wustl.edu	37	1	10725140	10725140	+	Nonsense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	1	10725140	10725140	C	A	SNP	CASZ1	ENST00000377022	human	ensembl	74_37	-1	known	nonsense	c.505	p.G169*	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CASZ1	HGNC	ENSG00000130940	tier1	-	-	29	0	0.00	44	4	8.33	37	0	0.00	6	0	0.00
CDC42EP1	0	genome.wustl.edu	37	22	37964613	37964613	+	Missense_Mutation	SNP	G	G	T			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	22	37964613	37964613	G	T	SNP	CDC42EP1	ENST00000249014	human	ensembl	74_37	+1	known	missense	c.962	p.W321L	0.365	NULL	pfam_CRIB_dom,smart_CRIB_dom,pfscan_CRIB_dom	-	no_errors	CDC42EP1	HGNC	ENSG00000128283	tier1	-	-	36	0	0.00	20	3	13.04	14	0	0.00	6	0	0.00
KRTAP5-5	0	genome.wustl.edu	37	11	1651210	1651239	+	In_Frame_Del	DEL	GCTGTGGCTCCGGCTGTGCGGGCTGTGGGG	GCTGTGGCTCCGGCTGTGCGGGCTGTGGGG	-			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	GCTGTGGCTCCGGCTGTGCGGGCTGTGGGG	GCTGTGGCTCCGGCTGTGCGGGCTGTGGGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	11	1651210	1651239	GCTGTGGCTCCGGCTGTGCGGGCTGTGGGG	-	DEL	KRTAP5-5	ENST00000399676	human	ensembl	74_37	+1	known	in_frame_del	c.140_169	p.GCAGCGGCGS51in_frame_del	0.818:0.967:0.993:0.997:0.997:0.999:1.000:0.998:0.998:0.991:0.983:0.976:1.000:1.000:0.999:0.995:0.061:0.083:0.113:0.325:0.996:0.999:1.000:1.000:0.999:0.994:0.996:0.995:0.546:0.579	NULL	NULL	-	no_errors	KRTAP5-5	HGNC	ENSG00000185940	tier1			6	0	0.00	2	0	0.00	6	0	0.00	2	0	0.00
PTGDS	0	genome.wustl.edu	37	9	139873774	139873774	+	Silent	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	9	139873774	139873774	C	A	SNP	PTGDS	ENST00000224167	human	ensembl	74_37	+1	known	silent	c.354	p.P118	0.000	superfamily_Calycin-like	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_PstgldnD_synth	-	no_errors	PTGDS	HGNC	ENSG00000107317	tier1	-	-	73	0	0.00	32	4	11.11	12	0	0.00	2	0	0.00
DNM1P51	0	genome.wustl.edu	37	15	84957480	84957499	+	R	DEL	GGCCCCACATCCATTGAGAA	GGCCCCACATCCATTGAGAA	-			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	GGCCCCACATCCATTGAGAA	GGCCCCACATCCATTGAGAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	15	84957480	84957499	GGCCCCACATCCATTGAGAA	-	DEL	DNM1P51	ENST00000558801	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.404:0.401:0.398:0.395:0.392:0.390:0.387:0.385:0.382:0.380:0.378:0.376:0.374:0.372:0.370:0.368:0.366:0.365:0.363:0.362	-	-	-	no_errors	DNM1P51	HGNC	ENSG00000235370	tier1			1	0	0.00	1	1	50.00	1	0	0.00	1	1	50.00
ENSG00000236233	0	genome.wustl.edu	37	9	67793683	67793684	+	R	INS	-	-	CT			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	9	67793683	67793684	-	CT	INS	ENSG00000236233	ENST00000315762	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.063:0.065	-	-	-	no_errors	RP11-12A20.7	Clone_based_vega_gene	ENSG00000236233	tier1			10	0	0.00	7	6	46.15	0	0	0.00	1	0	0.00
PSG8	0	genome.wustl.edu	37	19	43257095	43257096	+	R	INS	-	-	GGTTGAGATGGTTGAGA			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	19	43257095	43257096	-	GGTTGAGATGGTTGAGA	INS	PSG8	ENST00000600709	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.099:0.098	-	-	-	no_errors	PSG8	HGNC	ENSG00000124467	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
SGK223	0	genome.wustl.edu	37	8	8176387	8176388	+	In_Frame_Ins	INS	-	-	GGGGCG			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	8	8176387	8176388	-	GGGGCG	INS	SGK223	ENST00000330777	human	ensembl	74_37	-1	known	in_frame_ins	c.3498_3497	p.1170in_frame_insPA	0.000:0.034	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	SGK223	Uniprot_gn	ENSG00000182319	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
CHD2	0	genome.wustl.edu	37	15	93558113	93558113	+	Missense_Mutation	SNP	C	C	A			TCGA-JV-A75J-01A-11D-A32I-09	TCGA-JV-A75J-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9003f7a7-91de-4a5f-b63b-e2c6da70f128	dfb9bea3-cc77-42ff-b489-c40d0c923396	15	93558113	93558113	C	A	SNP	CHD2	ENST00000557381	human	ensembl	74_37	+1	putative	missense	c.4880	p.P1627H	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD2	HGNC	ENSG00000173575	tier1	-	-	29	0	0.00	46	4	8.00	242	0	0.00	153	2	1.29
