Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
MTMR10	0	genome.wustl.edu	37	15	31267168	31267168	+	Silent	SNP	A	A	G			TCGA-K1-A42W-01A-11D-A24N-09	TCGA-K1-A42W-10A-01D-A24N-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dd93f952-2796-426f-add8-9a7ab441c794	39fd2203-42c8-4284-98bc-ff7ca45239ac	15	31267168	31267168	A	G	SNP	MTMR10	ENST00000435680	human	ensembl	74_37	-1	known	silent	c.297	p.D99	1.000	NULL	pfam_Myotubularin_assoc,pfam_Myotubularin-like_Pase_dom	-	no_errors	MTMR10	HGNC	ENSG00000166912	tier1	-	-	51	0	0.00	38	21	35.59	126	0	0.00	79	53	40.15
TOPBP1	0	genome.wustl.edu	37	3	133337269	133337269	+	Missense_Mutation	SNP	C	C	T			TCGA-K1-A42W-01A-11D-A24N-09	TCGA-K1-A42W-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dd93f952-2796-426f-add8-9a7ab441c794	39fd2203-42c8-4284-98bc-ff7ca45239ac	3	133337269	133337269	C	T	SNP	TOPBP1	ENST00000260810	human	ensembl	74_37	-1	known	missense	c.3380	p.R1127H	1.000	NULL	pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_Secretoglobin,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TOPBP1	HGNC	ENSG00000163781	tier1	-	-	39	0	0.00	50	19	27.14	111	0	0.00	88	26	22.81
CXCL14	0	genome.wustl.edu	37	5	134914193	134914193	+	Missense_Mutation	SNP	A	A	G			TCGA-K1-A42W-01A-11D-A24N-09	TCGA-K1-A42W-10A-01D-A24N-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dd93f952-2796-426f-add8-9a7ab441c794	39fd2203-42c8-4284-98bc-ff7ca45239ac	5	134914193	134914193	A	G	SNP	CXCL14	ENST00000337225	human	ensembl	74_37	-1	known	missense	c.137	p.I46T	1.000	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom	-	no_errors	CXCL14	HGNC	ENSG00000145824	tier1	-	-	62	0	0.00	102	26	20.31	46	0	0.00	88	10	10.20
RGL3	0	genome.wustl.edu	37	19	11526773	11526773	+	Missense_Mutation	SNP	G	G	A			TCGA-K1-A42W-01A-11D-A24N-09	TCGA-K1-A42W-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dd93f952-2796-426f-add8-9a7ab441c794	39fd2203-42c8-4284-98bc-ff7ca45239ac	19	11526773	11526773	G	A	SNP	RGL3	ENST00000563726	human	ensembl	74_37	-1	known	missense	c.472	p.P158S	0.981	pfscan_Ras-like_Gua-exchang_fac_N	superfamily_Ras_GEF_dom,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL3	HGNC	ENSG00000205517	tier1	-	-	19	0	0.00	17	9	34.62	20	0	0.00	21	11	34.38
C9	0	genome.wustl.edu	37	5	39288847	39288847	+	Silent	SNP	G	G	A			TCGA-K1-A42W-01A-11D-A24N-09	TCGA-K1-A42W-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dd93f952-2796-426f-add8-9a7ab441c794	39fd2203-42c8-4284-98bc-ff7ca45239ac	5	39288847	39288847	G	A	SNP	C9	ENST00000263408	human	ensembl	74_37	-1	known	silent	c.1623	p.I541	0.001	NULL	pfam_MACPF,pfam_LDrepeatLR_classA_rpt,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,prints_MAC_perforin,pfscan_LDrepeatLR_classA_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	C9	HGNC	ENSG00000113600	tier1	-	-	35	0	0.00	71	11	13.41	101	0	0.00	171	28	14.00
ACTR6	0	genome.wustl.edu	37	12	100613903	100613903	+	Missense_Mutation	SNP	T	T	C			TCGA-K1-A42W-01A-11D-A24N-09	TCGA-K1-A42W-10A-01D-A24N-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dd93f952-2796-426f-add8-9a7ab441c794	39fd2203-42c8-4284-98bc-ff7ca45239ac	12	100613903	100613903	T	C	SNP	ACTR6	ENST00000188312	human	ensembl	74_37	+1	known	missense	c.1040	p.V347A	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related	-	no_errors	ACTR6	HGNC	ENSG00000075089	tier1	-	-	33	0	0.00	23	22	48.89	130	0	0.00	51	39	43.33
NEK10	0	genome.wustl.edu	37	3	27393955	27393955	+	Splice_Site	SNP	C	C	T			TCGA-K1-A42W-01A-11D-A24N-09	TCGA-K1-A42W-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dd93f952-2796-426f-add8-9a7ab441c794	39fd2203-42c8-4284-98bc-ff7ca45239ac	3	27393955	27393955	C	T	SNP	NEK10	ENST00000341435	human	ensembl	74_37	-1	known	splice_site	c.132+1	e2+1	1.000	-	-	-	no_errors	NEK10	HGNC	ENSG00000163491	tier1	-	-	25	0	0.00	7	12	63.16	96	0	0.00	55	54	49.54
TUBD1	0	genome.wustl.edu	37	17	57968332	57968332	+	Missense_Mutation	SNP	C	C	T			TCGA-K1-A42W-01A-11D-A24N-09	TCGA-K1-A42W-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dd93f952-2796-426f-add8-9a7ab441c794	39fd2203-42c8-4284-98bc-ff7ca45239ac	17	57968332	57968332	C	T	SNP	TUBD1	ENST00000325752	human	ensembl	74_37	-1	known	missense	c.32	p.C11Y	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,prints_Tubulin	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,prints_Delta_tubulin,prints_Tubulin,prints_Epsilon_tubulin	-	no_errors	TUBD1	HGNC	ENSG00000108423	tier1	-	-	8	0	0.00	11	6	35.29	97	0	0.00	65	22	25.29
RTTN	0	genome.wustl.edu	37	18	67836097	67836097	+	Silent	SNP	C	C	A			TCGA-K1-A42W-01A-11D-A24N-09	TCGA-K1-A42W-10A-01D-A24N-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dd93f952-2796-426f-add8-9a7ab441c794	39fd2203-42c8-4284-98bc-ff7ca45239ac	18	67836097	67836097	C	A	SNP	RTTN	ENST00000255674	human	ensembl	74_37	-1	known	silent	c.1683	p.G561	0.061	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	RTTN	HGNC	ENSG00000176225	tier1	-	-	32	0	0.00	38	16	29.63	83	1	1.19	69	24	25.81
TRPM6	0	genome.wustl.edu	37	9	77390934	77390934	+	Missense_Mutation	SNP	G	G	A			TCGA-K1-A42W-01A-11D-A24N-09	TCGA-K1-A42W-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dd93f952-2796-426f-add8-9a7ab441c794	39fd2203-42c8-4284-98bc-ff7ca45239ac	9	77390934	77390934	G	A	SNP	TRPM6	ENST00000451710	human	ensembl	74_37	-1	known	missense	c.3268	p.R1090C	1.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121	tier1	-	-	58	0	0.00	15	41	73.21	74	0	0.00	22	63	74.12
RIMBP2	0	genome.wustl.edu	37	12	130927134	130927134	+	Missense_Mutation	SNP	G	G	A			TCGA-K1-A42W-01A-11D-A24N-09	TCGA-K1-A42W-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dd93f952-2796-426f-add8-9a7ab441c794	39fd2203-42c8-4284-98bc-ff7ca45239ac	12	130927134	130927134	G	A	SNP	RIMBP2	ENST00000261655	human	ensembl	74_37	-1	known	missense	c.712	p.R238W	0.780	superfamily_SH3_domain	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	RIMBP2	HGNC	ENSG00000060709	tier1	-	-	53	0	0.00	46	14	22.95	69	0	0.00	61	16	20.78
EXTL3	0	genome.wustl.edu	37	8	28575380	28575380	+	Missense_Mutation	SNP	C	C	T			TCGA-K1-A42W-01A-11D-A24N-09	TCGA-K1-A42W-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dd93f952-2796-426f-add8-9a7ab441c794	39fd2203-42c8-4284-98bc-ff7ca45239ac	8	28575380	28575380	C	T	SNP	EXTL3	ENST00000220562	human	ensembl	74_37	+1	known	missense	c.1804	p.R602C	1.000	NULL	pfam_Hexc_Trfase_a,pfam_Exostosin	-	no_errors	EXTL3	HGNC	ENSG00000012232	tier1	-	-	39	0	0.00	46	11	19.30	102	0	0.00	95	30	24.00
SRMS	0	genome.wustl.edu	37	20	62172208	62172208	+	Missense_Mutation	SNP	C	C	T			TCGA-K1-A42W-01A-11D-A24N-09	TCGA-K1-A42W-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dd93f952-2796-426f-add8-9a7ab441c794	39fd2203-42c8-4284-98bc-ff7ca45239ac	20	62172208	62172208	C	T	SNP	SRMS	ENST00000217188	human	ensembl	74_37	-1	known	missense	c.1430	p.R477Q	0.388	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	SRMS	HGNC	ENSG00000125508	tier1	-	-	58	0	0.00	41	22	34.92	31	0	0.00	17	3	14.29
MUC6	0	genome.wustl.edu	37	11	1031025	1031025	+	Silent	SNP	G	G	T			TCGA-K1-A42W-01A-11D-A24N-09	TCGA-K1-A42W-10A-01D-A24N-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dd93f952-2796-426f-add8-9a7ab441c794	39fd2203-42c8-4284-98bc-ff7ca45239ac	11	1031025	1031025	G	T	SNP	MUC6	ENST00000421673	human	ensembl	74_37	-1	known	silent	c.606	p.A202	0.015	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956	tier1	-	-	48	0	0.00	16	11	40.74	33	0	0.00	22	3	12.00
ZNF19	0	genome.wustl.edu	37	16	71509307	71509307	+	Missense_Mutation	SNP	C	C	A			TCGA-K1-A42W-01A-11D-A24N-09	TCGA-K1-A42W-10A-01D-A24N-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dd93f952-2796-426f-add8-9a7ab441c794	39fd2203-42c8-4284-98bc-ff7ca45239ac	16	71509307	71509307	C	A	SNP	ZNF19	ENST00000288177	human	ensembl	74_37	-1	known	missense	c.1143	p.Q381H	0.938	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF19	HGNC	ENSG00000157429	tier1	-	-	67	0	0.00	60	14	18.92	76	1	1.30	74	26	26.00
COL28A1	0	genome.wustl.edu	37	7	7550731	7550731	+	Silent	SNP	T	T	C			TCGA-K1-A42W-01A-11D-A24N-09	TCGA-K1-A42W-10A-01D-A24N-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dd93f952-2796-426f-add8-9a7ab441c794	39fd2203-42c8-4284-98bc-ff7ca45239ac	7	7550731	7550731	T	C	SNP	COL28A1	ENST00000399429	human	ensembl	74_37	-1	known	silent	c.918	p.K306	1.000	NULL	pfam_Collagen,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m	-	no_errors	COL28A1	HGNC	ENSG00000215018	tier1	-	-	49	0	0.00	23	9	28.12	114	1	0.87	67	27	28.72
FBXO38	0	genome.wustl.edu	37	5	147774413	147774413	+	Missense_Mutation	SNP	A	A	G			TCGA-K1-A42W-01A-11D-A24N-09	TCGA-K1-A42W-10A-01D-A24N-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dd93f952-2796-426f-add8-9a7ab441c794	39fd2203-42c8-4284-98bc-ff7ca45239ac	5	147774413	147774413	A	G	SNP	FBXO38	ENST00000340253	human	ensembl	74_37	+1	known	missense	c.74	p.E25G	1.000	superfamily_F-box_dom	superfamily_F-box_dom	-	no_errors	FBXO38	HGNC	ENSG00000145868	tier1	-	-	64	0	0.00	102	26	20.31	56	0	0.00	94	22	18.97
TBX3	0	genome.wustl.edu	37	12	115112627	115112627	+	Silent	SNP	G	G	A			TCGA-K1-A42W-01A-11D-A24N-09	TCGA-K1-A42W-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dd93f952-2796-426f-add8-9a7ab441c794	39fd2203-42c8-4284-98bc-ff7ca45239ac	12	115112627	115112627	G	A	SNP	TBX3	ENST00000257566	human	ensembl	74_37	-1	known	silent	c.1113	p.S371	1.000	pfam_TBX	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_D-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	tier1	-	-	36	0	0.00	32	14	30.43	46	0	0.00	24	13	34.21
TP53	0	genome.wustl.edu	37	17	7577033	7577033	+	Missense_Mutation	SNP	C	C	A			TCGA-K1-A42W-01A-11D-A24N-09	TCGA-K1-A42W-10A-01D-A24N-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dd93f952-2796-426f-add8-9a7ab441c794	39fd2203-42c8-4284-98bc-ff7ca45239ac	17	7577033	7577033	C	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.905	p.G302V	0.865	NULL	pfam_p53_D-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_D-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	60	0	0.00	24	31	56.36	69	0	0.00	22	41	64.06
TADA3	0	genome.wustl.edu	37	3	9833131	9833131	+	Missense_Mutation	SNP	C	C	T			TCGA-K1-A42W-01A-11D-A24N-09	TCGA-K1-A42W-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dd93f952-2796-426f-add8-9a7ab441c794	39fd2203-42c8-4284-98bc-ff7ca45239ac	3	9833131	9833131	C	T	SNP	TADA3	ENST00000301964	human	ensembl	74_37	-1	known	missense	c.20	p.C7Y	1.000	NULL	pfam_Histone_AcTrfase_su3	-	no_errors	TADA3	HGNC	ENSG00000171148	tier1	-	-	28	0	0.00	12	9	42.86	56	0	0.00	56	16	22.22
C17orf70	0	genome.wustl.edu	37	17	79517588	79517588	+	Missense_Mutation	SNP	C	C	A			TCGA-K1-A42W-01A-11D-A24N-09	TCGA-K1-A42W-10A-01D-A24N-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dd93f952-2796-426f-add8-9a7ab441c794	39fd2203-42c8-4284-98bc-ff7ca45239ac	17	79517588	79517588	C	A	SNP	C17orf70	ENST00000327787	human	ensembl	74_37	-1	known	missense	c.932	p.C311F	1.000	NULL	NULL	-	no_errors	C17orf70	HGNC	ENSG00000185504	tier1	-	-	43	0	0.00	17	7	29.17	22	0	0.00	13	9	40.91
NKX2-2	0	genome.wustl.edu	37	20	21494277	21494277	+	Missense_Mutation	SNP	A	A	C			TCGA-K1-A42W-01A-11D-A24N-09	TCGA-K1-A42W-10A-01D-A24N-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dd93f952-2796-426f-add8-9a7ab441c794	39fd2203-42c8-4284-98bc-ff7ca45239ac	20	21494277	21494277	A	C	SNP	NKX2-2	ENST00000377142	human	ensembl	74_37	-1	known	missense	c.31	p.S11A	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	NKX2-2	HGNC	ENSG00000125820	tier1	-	-	50	0	0.00	35	35	50.00	65	0	0.00	60	41	40.59
COL4A2	0	genome.wustl.edu	37	13	111114516	111114516	+	Missense_Mutation	SNP	G	G	A			TCGA-K1-A42W-01A-11D-A24N-09	TCGA-K1-A42W-10A-01D-A24N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dd93f952-2796-426f-add8-9a7ab441c794	39fd2203-42c8-4284-98bc-ff7ca45239ac	13	111114516	111114516	G	A	SNP	COL4A2	ENST00000360467	human	ensembl	74_37	+1	known	missense	c.1652	p.R551K	0.003	NULL	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A2	HGNC	ENSG00000134871	tier1	-	-	59	0	0.00	23	8	25.81	67	0	0.00	49	19	27.94
UPK1B	0	genome.wustl.edu	37	3	118909894	118909894	+	Silent	SNP	T	T	C			TCGA-K1-A42W-01A-11D-A24N-09	TCGA-K1-A42W-10A-01D-A24N-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dd93f952-2796-426f-add8-9a7ab441c794	39fd2203-42c8-4284-98bc-ff7ca45239ac	3	118909894	118909894	T	C	SNP	UPK1B	ENST00000264234	human	ensembl	74_37	+1	known	silent	c.411	p.N137	0.941	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	UPK1B	HGNC	ENSG00000114638	tier1	-	-	54	0	0.00	34	9	20.93	119	0	0.00	114	14	10.94
TCP11L2	0	genome.wustl.edu	37	12	106729591	106729591	+	Missense_Mutation	SNP	A	A	C			TCGA-K1-A42W-01A-11D-A24N-09	TCGA-K1-A42W-10A-01D-A24N-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dd93f952-2796-426f-add8-9a7ab441c794	39fd2203-42c8-4284-98bc-ff7ca45239ac	12	106729591	106729591	A	C	SNP	TCP11L2	ENST00000299045	human	ensembl	74_37	+1	known	missense	c.947	p.K316T	0.993	pfam_Tcp11	pfam_Tcp11	-	no_errors	TCP11L2	HGNC	ENSG00000166046	tier1	-	-	25	0	0.00	10	11	52.38	97	0	0.00	99	22	18.18
TAT	0	genome.wustl.edu	37	16	71610109	71610109	+	Frame_Shift_Del	DEL	G	G	-			TCGA-K1-A42W-01A-11D-A24N-09	TCGA-K1-A42W-10A-01D-A24N-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dd93f952-2796-426f-add8-9a7ab441c794	39fd2203-42c8-4284-98bc-ff7ca45239ac	16	71610109	71610109	G	-	DEL	TAT	ENST00000355962	human	ensembl	74_37	-1	known	frame_shift_del	c.210	p.N70fs	0.983	superfamily_PyrdxlP-dep_Trfase,pirsf_Tyrosine_transaminase,tigrfam_Tyrosine_aminoTrfase,tigrfam_TyrNic_aminoTrfase	pfam_Aminotransferase_I/II,pfam_Tyr_aminoTrfase_ubiquitination,pfam_ArAA_b-elim_lyase/Thr_aldolase,pfam_Aminotrans_V/Cys_dSase,pfam_DegT/StrS_aminotransferase,superfamily_PyrdxlP-dep_Trfase,pirsf_Tyrosine_transaminase,tigrfam_Tyrosine_aminoTrfase,tigrfam_TyrNic_aminoTrfase	-	no_errors	TAT	HGNC	ENSG00000198650	tier1			133	0	0.00	104	29	21.80	132	0	0.00	121	40	24.84
TP53	0	genome.wustl.edu	37	17	7577029	7577032	+	Frame_Shift_Del	DEL	GCTC	GCTC	-			TCGA-K1-A42W-01A-11D-A24N-09	TCGA-K1-A42W-10A-01D-A24N-09	GCTC	GCTC	GCTC	-	GCTC	GCTC	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dd93f952-2796-426f-add8-9a7ab441c794	39fd2203-42c8-4284-98bc-ff7ca45239ac	17	7577029	7577032	GCTC	-	DEL	TP53	ENST00000269305	human	ensembl	74_37	-1	known	frame_shift_del	c.909_906	p.S303fs	0.989:0.998:1.000:0.995	NULL	pfam_p53_D-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_D-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1			62	0	0.00	26	30	53.57	65	0	0.00	25	39	60.94
ATRX	0	genome.wustl.edu	37	X	76888683	76888697	+	Splice_Site	DEL	TTAATACCTTACCTG	TTAATACCTTACCTG	-			TCGA-K1-A42W-01A-11D-A24N-09	TCGA-K1-A42W-10A-01D-A24N-09	TTAATACCTTACCTG	TTAATACCTTACCTG	TTAATACCTTACCTG	-	TTAATACCTTACCTG	TTAATACCTTACCTG	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dd93f952-2796-426f-add8-9a7ab441c794	39fd2203-42c8-4284-98bc-ff7ca45239ac	X	76888683	76888697	TTAATACCTTACCTG	-	DEL	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	splice_site_del	c.5134+4_5134+1	e20-1	0.000:0.000:0.001:0.001:0.060:0.078:0.018:0.028:0.138:0.969:1.000:1.000:1.000:1.000:1.000	-	-	-	no_errors	ATRX	HGNC	ENSG00000085224	tier1			119	0	0.00	22	5	18.52	119	0	0.00	22	5	18.52
KRTAP12-2	0	genome.wustl.edu	37	21	46086641	46086641	+	Missense_Mutation	SNP	A	A	G			TCGA-K1-A42W-01A-11D-A24N-09	TCGA-K1-A42W-10A-01D-A24N-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dd93f952-2796-426f-add8-9a7ab441c794	39fd2203-42c8-4284-98bc-ff7ca45239ac	21	46086641	46086641	A	G	SNP	KRTAP12-2	ENST00000360770	human	ensembl	74_37	-1	known	missense	c.163	p.C55R	0.153	pfam_KRTAP_PMG	pfam_KRTAP_PMG	-	no_errors	KRTAP12-2	HGNC	ENSG00000221864	tier1	-	-	62	0	0.00	30	19	38.78	19	0	0.00	8	2	20.00
MAGED1	0	genome.wustl.edu	37	X	51637744	51637744	+	Missense_Mutation	SNP	G	G	C			TCGA-K1-A42W-01A-11D-A24N-09	TCGA-K1-A42W-10A-01D-A24N-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dd93f952-2796-426f-add8-9a7ab441c794	39fd2203-42c8-4284-98bc-ff7ca45239ac	X	51637744	51637744	G	C	SNP	MAGED1	ENST00000375695	human	ensembl	74_37	+1	known	missense	c.67	p.V23L	0.484	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGED1	HGNC	ENSG00000179222	tier1	-	-	50	0	0.00	50	7	12.28	15	0	0.00	7	6	46.15
NFATC2	0	genome.wustl.edu	37	20	50049142	50049142	+	Missense_Mutation	SNP	G	G	C			TCGA-K1-A42W-01A-11D-A24N-09	TCGA-K1-A42W-10A-01D-A24N-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dd93f952-2796-426f-add8-9a7ab441c794	39fd2203-42c8-4284-98bc-ff7ca45239ac	20	50049142	50049142	G	C	SNP	NFATC2	ENST00000396009	human	ensembl	74_37	-1	known	missense	c.2184	p.C728W	1.000	NULL	pfam_RHD,pfam_IPT,superfamily_p53-like_TF_D-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFATC2	HGNC	ENSG00000101096	tier1	-	-	136	0	0.00	111	16	12.60	14	0	0.00	7	3	30.00
GLRA1	0	genome.wustl.edu	37	5	151235943	151235943	+	Missense_Mutation	SNP	T	T	C			TCGA-K1-A42W-01A-11D-A24N-09	TCGA-K1-A42W-10A-01D-A24N-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dd93f952-2796-426f-add8-9a7ab441c794	39fd2203-42c8-4284-98bc-ff7ca45239ac	5	151235943	151235943	T	C	SNP	GLRA1	ENST00000455880	human	ensembl	74_37	-1	known	missense	c.478	p.I160V	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_Glycine_rcpt_A,prints_Glycine_rcpt_A1,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GLRA1	HGNC	ENSG00000145888	tier1	-	-	25	0	0.00	45	8	15.09	66	0	0.00	73	7	8.75
CFP	0	genome.wustl.edu	37	X	47487931	47487931	+	R	SNP	C	C	T			TCGA-K1-A42W-01A-11D-A24N-09	TCGA-K1-A42W-10A-01D-A24N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dd93f952-2796-426f-add8-9a7ab441c794	39fd2203-42c8-4284-98bc-ff7ca45239ac	X	47487931	47487931	C	T	SNP	CFP	ENST00000480317	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CFP	HGNC	ENSG00000126759	tier1	-	-	88	0	0.00	133	15	10.14	135	0	0.00	141	10	6.62
SRSF5	0	genome.wustl.edu	37	14	70234913	70234930	+	In_Frame_Del	DEL	GCGGCCAGGGAGAAGGAC	GCGGCCAGGGAGAAGGAC	-			TCGA-K1-A42W-01A-11D-A24N-09	TCGA-K1-A42W-10A-01D-A24N-09	GCGGCCAGGGAGAAGGAC	GCGGCCAGGGAGAAGGAC	GCGGCCAGGGAGAAGGAC	-	GCGGCCAGGGAGAAGGAC	GCGGCCAGGGAGAAGGAC	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	dd93f952-2796-426f-add8-9a7ab441c794	39fd2203-42c8-4284-98bc-ff7ca45239ac	14	70234913	70234930	GCGGCCAGGGAGAAGGAC	-	DEL	SRSF5	ENST00000451983	human	ensembl	74_37	+1	known	in_frame_del	c.40_57	p.AAREKD14in_frame_del	0.897:0.990:0.986:1.000:1.000:1.000:0.990:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.993:1.000:1.000:1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SRSF5	HGNC	ENSG00000100650	tier1			117	0	0.00	117	5	4.10	117	0	0.00	117	5	4.10
FOXN4	0	genome.wustl.edu	37	12	109725976	109725976	+	Missense_Mutation	SNP	G	G	T			TCGA-K1-A42W-01A-11D-A24N-09	TCGA-K1-A42W-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dd93f952-2796-426f-add8-9a7ab441c794	39fd2203-42c8-4284-98bc-ff7ca45239ac	12	109725976	109725976	G	T	SNP	FOXN4	ENST00000299162	human	ensembl	74_37	-1	known	missense	c.242	p.A81D	0.808	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXN4	HGNC	ENSG00000139445	tier1	-	-	57	0	0.00	27	4	12.90	2	0	0.00	1	0	0.00
GOLGA6L4	0	genome.wustl.edu	37	15	84909385	84909385	+	Missense_Mutation	SNP	G	G	A			TCGA-K1-A42W-01A-11D-A24N-09	TCGA-K1-A42W-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dd93f952-2796-426f-add8-9a7ab441c794	39fd2203-42c8-4284-98bc-ff7ca45239ac	15	84909385	84909385	G	A	SNP	GOLGA6L4	ENST00000422563	human	ensembl	74_37	+1	known	missense	c.307	p.D103N	0.004	NULL	NULL	-	no_errors	GOLGA6L4	HGNC	ENSG00000184206	tier1	rs77228815	-	91	0	0.00	118	12	9.23	0	0	0.00	0	0	0.00
ALG1	0	genome.wustl.edu	37	16	5125535	5125536	+	Frame_Shift_Ins	INS	-	-	GA			TCGA-K1-A42W-01A-11D-A24N-09	TCGA-K1-A42W-10A-01D-A24N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dd93f952-2796-426f-add8-9a7ab441c794	39fd2203-42c8-4284-98bc-ff7ca45239ac	16	5125535	5125536	-	GA	INS	ALG1	ENST00000262374	human	ensembl	74_37	+1	known	frame_shift_ins	c.537_538	p.W179fs	0.998:1.000	NULL	pfam_Glyco_trans_1	-	no_errors	ALG1	HGNC	ENSG00000033011	tier1			52	0	0.00	40	5	11.11	92	0	0.00	94	3	3.09
ALG1	0	genome.wustl.edu	37	16	5125537	5125538	+	Frame_Shift_Ins	INS	-	-	A			TCGA-K1-A42W-01A-11D-A24N-09	TCGA-K1-A42W-10A-01D-A24N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dd93f952-2796-426f-add8-9a7ab441c794	39fd2203-42c8-4284-98bc-ff7ca45239ac	16	5125537	5125538	-	A	INS	ALG1	ENST00000262374	human	ensembl	74_37	+1	known	frame_shift_ins	c.539_540	p.W180fs	1.000:1.000	NULL	pfam_Glyco_trans_1	-	no_errors	ALG1	HGNC	ENSG00000033011	tier1			49	0	0.00	39	5	11.36	91	0	0.00	93	3	3.12
C1orf35	0	genome.wustl.edu	37	1	228288708	228288709	+	R	INS	-	-	A			TCGA-K1-A42W-01A-11D-A24N-09	TCGA-K1-A42W-10A-01D-A24N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	dd93f952-2796-426f-add8-9a7ab441c794	39fd2203-42c8-4284-98bc-ff7ca45239ac	1	228288708	228288709	-	A	INS	C1orf35	ENST00000469781	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.001	-	-	-	no_errors	C1orf35	HGNC	ENSG00000143793	tier1			40	0	0.00	28	6	17.65	35	0	0.00	37	2	5.13
