Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
FBXO42	0	genome.wustl.edu	37	1	16577304	16577304	+	Missense_Mutation	SNP	C	C	T			TCGA-MB-A5Y9-01A-11D-A29N-09	TCGA-MB-A5Y9-10A-01D-A29N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	055a030d-bb19-4224-98bf-cb860ff64b9d	109e7716-d7ac-4834-a63d-f88057eb4e6c	1	16577304	16577304	C	T	SNP	FBXO42	ENST00000375592	human	ensembl	74_37	-1	known	missense	c.2015	p.G672E	0.999	NULL	pfam_Kelch_2,pfam_Kelch_1,pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO42	HGNC	ENSG00000037637	tier1	-	-	73	0	0.00	50	10	16.67	121	0	0.00	69	22	24.18
PKN1	0	genome.wustl.edu	37	19	14581437	14581437	+	Silent	SNP	C	C	T			TCGA-MB-A5Y9-01A-11D-A29N-09	TCGA-MB-A5Y9-10A-01D-A29N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	055a030d-bb19-4224-98bf-cb860ff64b9d	109e7716-d7ac-4834-a63d-f88057eb4e6c	19	14581437	14581437	C	T	SNP	PKN1	ENST00000342216	human	ensembl	74_37	+1	known	silent	c.2505	p.N835	0.889	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_dom,smart_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	PKN1	HGNC	ENSG00000123143	tier1	-	-	52	0	0.00	57	13	18.57	43	0	0.00	39	9	18.75
TTC6	0	genome.wustl.edu	37	14	38207994	38207994	+	Missense_Mutation	SNP	C	C	T			TCGA-MB-A5Y9-01A-11D-A29N-09	TCGA-MB-A5Y9-10A-01D-A29N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	055a030d-bb19-4224-98bf-cb860ff64b9d	109e7716-d7ac-4834-a63d-f88057eb4e6c	14	38207994	38207994	C	T	SNP	TTC6	ENST00000553443	human	ensembl	74_37	+1	novel	missense	c.1997	p.S666F	0.009	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC6	HGNC	ENSG00000139865	tier1	-	-	15	0	0.00	26	5	15.62	118	0	0.00	178	41	18.72
PCDHA5	0	genome.wustl.edu	37	5	140202722	140202722	+	Silent	SNP	C	C	T			TCGA-MB-A5Y9-01A-11D-A29N-09	TCGA-MB-A5Y9-10A-01D-A29N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	055a030d-bb19-4224-98bf-cb860ff64b9d	109e7716-d7ac-4834-a63d-f88057eb4e6c	5	140202722	140202722	C	T	SNP	PCDHA5	ENST00000529859	human	ensembl	74_37	+1	known	silent	c.1362	p.F454	0.085	superfamily_Cadherin-like,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA5	HGNC	ENSG00000204965	tier1	-	-	114	0	0.00	113	46	28.93	27	0	0.00	22	6	21.43
CELSR2	0	genome.wustl.edu	37	1	109813851	109813851	+	Silent	SNP	C	C	T			TCGA-MB-A5Y9-01A-11D-A29N-09	TCGA-MB-A5Y9-10A-01D-A29N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	055a030d-bb19-4224-98bf-cb860ff64b9d	109e7716-d7ac-4834-a63d-f88057eb4e6c	1	109813851	109813851	C	T	SNP	CELSR2	ENST00000271332	human	ensembl	74_37	+1	known	silent	c.7609	p.L2537	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126	tier1	-	-	32	0	0.00	30	5	14.29	57	0	0.00	38	13	25.49
FAM47C	0	genome.wustl.edu	37	X	37027132	37027132	+	Missense_Mutation	SNP	A	A	T			TCGA-MB-A5Y9-01A-11D-A29N-09	TCGA-MB-A5Y9-10A-01D-A29N-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	055a030d-bb19-4224-98bf-cb860ff64b9d	109e7716-d7ac-4834-a63d-f88057eb4e6c	X	37027132	37027132	A	T	SNP	FAM47C	ENST00000358047	human	ensembl	74_37	+1	known	missense	c.649	p.T217S	0.964	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173	tier1	-	-	44	0	0.00	59	7	10.45	12	0	0.00	15	3	16.67
VCAM1	0	genome.wustl.edu	37	1	101200244	101200244	+	Missense_Mutation	SNP	T	T	C			TCGA-MB-A5Y9-01A-11D-A29N-09	TCGA-MB-A5Y9-10A-01D-A29N-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	055a030d-bb19-4224-98bf-cb860ff64b9d	109e7716-d7ac-4834-a63d-f88057eb4e6c	1	101200244	101200244	T	C	SNP	VCAM1	ENST00000294728	human	ensembl	74_37	+1	known	missense	c.1979	p.L660S	0.325	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_C2-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom,prints_VCAM-1,prints_ICAM_VCAM_N	-	no_errors	VCAM1	HGNC	ENSG00000162692	tier1	-	-	31	0	0.00	28	5	15.15	151	0	0.00	119	19	13.67
TTC6	0	genome.wustl.edu	37	14	38208169	38208169	+	Silent	SNP	C	C	T			TCGA-MB-A5Y9-01A-11D-A29N-09	TCGA-MB-A5Y9-10A-01D-A29N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	055a030d-bb19-4224-98bf-cb860ff64b9d	109e7716-d7ac-4834-a63d-f88057eb4e6c	14	38208169	38208169	C	T	SNP	TTC6	ENST00000553443	human	ensembl	74_37	+1	novel	silent	c.2172	p.I724	0.000	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC6	HGNC	ENSG00000139865	tier1	-	-	28	0	0.00	60	16	21.05	106	0	0.00	157	45	22.28
TLL1	0	genome.wustl.edu	37	4	166914025	166914025	+	Missense_Mutation	SNP	G	G	A			TCGA-MB-A5Y9-01A-11D-A29N-09	TCGA-MB-A5Y9-10A-01D-A29N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	055a030d-bb19-4224-98bf-cb860ff64b9d	109e7716-d7ac-4834-a63d-f88057eb4e6c	4	166914025	166914025	G	A	SNP	TLL1	ENST00000061240	human	ensembl	74_37	+1	known	missense	c.350	p.R117K	1.000	pirsf_BMP_1/tolloid-like	pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_BMP_1/tolloid-like,pfscan_CUB_dom,pfscan_EG-like_dom,prints_Peptidase_M12A	-	no_errors	TLL1	HGNC	ENSG00000038295	tier1	-	-	43	0	0.00	33	10	23.26	137	0	0.00	107	21	16.15
C9orf152	0	genome.wustl.edu	37	9	112963433	112963433	+	Missense_Mutation	SNP	A	A	T			TCGA-MB-A5Y9-01A-11D-A29N-09	TCGA-MB-A5Y9-10A-01D-A29N-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	055a030d-bb19-4224-98bf-cb860ff64b9d	109e7716-d7ac-4834-a63d-f88057eb4e6c	9	112963433	112963433	A	T	SNP	C9orf152	ENST00000400613	human	ensembl	74_37	-1	known	missense	c.515	p.I172N	0.001	NULL	NULL	-	no_errors	C9orf152	HGNC	ENSG00000188959	tier1	-	-	40	0	0.00	40	5	11.11	83	0	0.00	40	5	11.11
CHRM5	0	genome.wustl.edu	37	15	34355670	34355670	+	Missense_Mutation	SNP	G	G	A			TCGA-MB-A5Y9-01A-11D-A29N-09	TCGA-MB-A5Y9-10A-01D-A29N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	055a030d-bb19-4224-98bf-cb860ff64b9d	109e7716-d7ac-4834-a63d-f88057eb4e6c	15	34355670	34355670	G	A	SNP	CHRM5	ENST00000383263	human	ensembl	74_37	+1	known	missense	c.752	p.R251K	0.040	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_M5_rcpt,prints_Musac_Ach_rcpt,prints_GPCR_Rhodpsn	-	no_errors	CHRM5	HGNC	ENSG00000184984	tier1	-	-	23	0	0.00	37	7	15.91	32	0	0.00	27	5	15.62
ZNF488	0	genome.wustl.edu	37	10	48370980	48370980	+	Missense_Mutation	SNP	G	G	A			TCGA-MB-A5Y9-01A-11D-A29N-09	TCGA-MB-A5Y9-10A-01D-A29N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	055a030d-bb19-4224-98bf-cb860ff64b9d	109e7716-d7ac-4834-a63d-f88057eb4e6c	10	48370980	48370980	G	A	SNP	ZNF488	ENST00000395702	human	ensembl	74_37	+1	known	missense	c.448	p.V150M	0.801	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF488	HGNC	ENSG00000165388	tier1	-	-	33	0	0.00	31	4	11.43	70	0	0.00	62	15	19.23
FMO6P	0	genome.wustl.edu	37	1	171116874	171116874	+	Silent	SNP	C	C	T			TCGA-MB-A5Y9-01A-11D-A29N-09	TCGA-MB-A5Y9-10A-01D-A29N-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	055a030d-bb19-4224-98bf-cb860ff64b9d	109e7716-d7ac-4834-a63d-f88057eb4e6c	1	171116874	171116874	C	T	SNP	FMO6P	ENST00000236166	human	ensembl	74_37	+1	novel	silent	c.594	p.D198	1.000	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/D,prints_Flavin_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/D,prints_Flavin_mOase,prints_Flavin_mOase_3,prints_Flavin_mOase_1	-	no_errors	FMO6P	HGNC	ENSG00000117507	tier1	-	-	35	0	0.00	53	6	10.17	89	0	0.00	102	6	5.56
PRKCB	0	genome.wustl.edu	37	16	24202517	24202517	+	Missense_Mutation	SNP	G	G	A			TCGA-MB-A5Y9-01A-11D-A29N-09	TCGA-MB-A5Y9-10A-01D-A29N-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	055a030d-bb19-4224-98bf-cb860ff64b9d	109e7716-d7ac-4834-a63d-f88057eb4e6c	16	24202517	24202517	G	A	SNP	PRKCB	ENST00000303531	human	ensembl	74_37	+1	known	missense	c.1829	p.R610H	1.000	superfamily_Kinase-like_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd,prints_C2_dom	-	no_errors	PRKCB	HGNC	ENSG00000166501	tier1	-	-	45	0	0.00	29	5	14.71	149	0	0.00	115	4	3.36
PABPC4L	0	genome.wustl.edu	37	4	135121699	135121699	+	Missense_Mutation	SNP	C	C	G			TCGA-MB-A5Y9-01A-11D-A29N-09	TCGA-MB-A5Y9-10A-01D-A29N-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	055a030d-bb19-4224-98bf-cb860ff64b9d	109e7716-d7ac-4834-a63d-f88057eb4e6c	4	135121699	135121699	C	G	SNP	PABPC4L	ENST00000529122	human	ensembl	74_37	-1	known	missense	c.650	p.G217A	1.000	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PABP_1234	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC4L	HGNC	ENSG00000254535	tier1	-	-	70	0	0.00	43	4	8.51	82	0	0.00	72	4	5.19
C6orf10	0	genome.wustl.edu	37	6	32261597	32261597	+	Missense_Mutation	SNP	T	T	C			TCGA-MB-A5Y9-01A-11D-A29N-09	TCGA-MB-A5Y9-10A-01D-A29N-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	055a030d-bb19-4224-98bf-cb860ff64b9d	109e7716-d7ac-4834-a63d-f88057eb4e6c	6	32261597	32261597	T	C	SNP	C6orf10	ENST00000447241	human	ensembl	74_37	-1	known	missense	c.853	p.K285E	0.001	NULL	NULL	-	no_errors	C6orf10	HGNC	ENSG00000204296	tier1	-	-	55	0	0.00	62	9	12.68	140	0	0.00	88	9	9.28
TP53	0	genome.wustl.edu	37	17	7577010	7577018	+	Splice_Site	DEL	CTTGCTTAC	CTTGCTTAC	-			TCGA-MB-A5Y9-01A-11D-A29N-09	TCGA-MB-A5Y9-10A-01D-A29N-09	CTTGCTTAC	CTTGCTTAC	CTTGCTTAC	-	CTTGCTTAC	CTTGCTTAC	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	055a030d-bb19-4224-98bf-cb860ff64b9d	109e7716-d7ac-4834-a63d-f88057eb4e6c	17	7577010	7577018	CTTGCTTAC	-	DEL	TP53	ENST00000269305	human	ensembl	74_37	-1	known	splice_site_del	c.919+1_919+1	e7+1	0.000:0.000:0.001:0.070:0.132:0.231:0.250:0.853:0.976	-	-	-	no_errors	TP53	HGNC	ENSG00000141510	tier1			66	0	0.00	63	6	8.70	66	0	0.00	63	6	8.70
ENSG00000216113	0	genome.wustl.edu	37	8	104863873	104863878	+	R	DEL	ACACAC	ACACAC	-			TCGA-MB-A5Y9-01A-11D-A29N-09	TCGA-MB-A5Y9-10A-01D-A29N-09	ACACAC	ACACAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	055a030d-bb19-4224-98bf-cb860ff64b9d	109e7716-d7ac-4834-a63d-f88057eb4e6c	8	104863873	104863878	ACACAC	-	DEL	ENSG00000216113	ENST00000401294	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.000:0.000	-	-	-	no_errors	AP001572.1	Clone_based_ensembl_gene	ENSG00000216113	tier1			10	0	0.00	2	0	0.00	10	0	0.00	2	0	0.00
LOC100128770	0	genome.wustl.edu	37	16	3085556	3085556	+	R	SNP	C	C	G			TCGA-MB-A5Y9-01A-11D-A29N-09	TCGA-MB-A5Y9-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	055a030d-bb19-4224-98bf-cb860ff64b9d	109e7716-d7ac-4834-a63d-f88057eb4e6c	16	3085556	3085556	C	G	SNP	LOC100128770	ENST00000382225	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-473M20.5	Clone_based_vega_gene	ENSG00000205890	tier1	-	-	39	0	0.00	47	12	20.00	14	0	0.00	8	0	0.00
DNM1P47	0	genome.wustl.edu	37	15	102299761	102299761	+	R	SNP	G	G	A			TCGA-MB-A5Y9-01A-11D-A29N-09	TCGA-MB-A5Y9-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	055a030d-bb19-4224-98bf-cb860ff64b9d	109e7716-d7ac-4834-a63d-f88057eb4e6c	15	102299761	102299761	G	A	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DNM1P47	HGNC	ENSG00000259660	tier1	-	-	14	0	0.00	13	6	31.58	0	0	0.00	0	0	0.00
ENSG00000221684	0	genome.wustl.edu	37	X	70979259	70979260	+	R	INS	-	-	GC			TCGA-MB-A5Y9-01A-11D-A29N-09	TCGA-MB-A5Y9-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	055a030d-bb19-4224-98bf-cb860ff64b9d	109e7716-d7ac-4834-a63d-f88057eb4e6c	X	70979259	70979260	-	GC	INS	ENSG00000221684	ENST00000408757	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	BX276092.1	Clone_based_ensembl_gene	ENSG00000221684	tier1			9	0	0.00	10	6	37.50	1	0	0.00	0	0	0.00
LOC100293748	0	genome.wustl.edu	37	1	149250592	149250592	+	R	SNP	G	G	C			TCGA-MB-A5Y9-01A-11D-A29N-09	TCGA-MB-A5Y9-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	055a030d-bb19-4224-98bf-cb860ff64b9d	109e7716-d7ac-4834-a63d-f88057eb4e6c	1	149250592	149250592	G	C	SNP	LOC100293748	ENST00000325963	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.021	-	-	-	no_errors	RP11-403I13.4	Clone_based_vega_gene	ENSG00000223779	tier1	rs114062375	-	8	0	0.00	2	6	75.00	1	0	0.00	0	0	0.00
MT-RNR2	0	genome.wustl.edu	37	MT	2301	2301	+	R	SNP	T	T	C			TCGA-MB-A5Y9-01A-11D-A29N-09	TCGA-MB-A5Y9-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	055a030d-bb19-4224-98bf-cb860ff64b9d	109e7716-d7ac-4834-a63d-f88057eb4e6c	MT	2301	2301	T	C	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	MT-RNR2	HGNC	ENSG00000210082	tier1	-	-	51	0	0.00	47	12	20.34	0	0	0.00	4	0	0.00
POTEM	0	genome.wustl.edu	37	14	20012850	20012850	+	Silent	SNP	A	A	T			TCGA-MB-A5Y9-01A-11D-A29N-09	TCGA-MB-A5Y9-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	055a030d-bb19-4224-98bf-cb860ff64b9d	109e7716-d7ac-4834-a63d-f88057eb4e6c	14	20012850	20012850	A	T	SNP	POTEM	ENST00000547722	human	ensembl	74_37	-1	known	silent	c.906	p.P302	0.030	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEM	HGNC	ENSG00000187537	tier1	rs201036322	-	17	0	0.00	10	4	28.57	0	0	0.00	0	0	0.00
WASH6P	0	genome.wustl.edu	37	X	155250570	155250570	+	R	SNP	C	C	G			TCGA-MB-A5Y9-01A-11D-A29N-09	TCGA-MB-A5Y9-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	055a030d-bb19-4224-98bf-cb860ff64b9d	109e7716-d7ac-4834-a63d-f88057eb4e6c	X	155250570	155250570	C	G	SNP	WASH6P	ENST00000476066	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	WASH6P	HGNC	ENSG00000182484	tier1	-	-	55	0	0.00	64	14	17.95	0	0	0.00	0	0	0.00
DMD	0	genome.wustl.edu	37	X	32583996	32583996	+	Silent	SNP	A	A	T			TCGA-MB-A5Y9-01A-11D-A29N-09	TCGA-MB-A5Y9-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	055a030d-bb19-4224-98bf-cb860ff64b9d	109e7716-d7ac-4834-a63d-f88057eb4e6c	X	32583996	32583996	A	T	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	silent	c.1815	p.V605	0.611	smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	tier1	-	-	30	0	0.00	32	5	13.51	65	0	0.00	65	3	4.41
OR2T2	0	genome.wustl.edu	37	1	248616790	248616790	+	Missense_Mutation	SNP	C	C	T			TCGA-MB-A5Y9-01A-11D-A29N-09	TCGA-MB-A5Y9-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	055a030d-bb19-4224-98bf-cb860ff64b9d	109e7716-d7ac-4834-a63d-f88057eb4e6c	1	248616790	248616790	C	T	SNP	OR2T2	ENST00000342927	human	ensembl	74_37	+1	known	missense	c.692	p.S231F	0.734	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T2	HGNC	ENSG00000196240	tier1	-	-	32	0	0.00	27	7	20.59	24	0	0.00	22	2	8.33
