Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
SIPA1	0	genome.wustl.edu	37	11	65413771	65413771	+	Missense_Mutation	SNP	C	C	T			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	11	65413771	65413771	C	T	SNP	SIPA1	ENST00000394224	human	ensembl	74_37	+1	known	missense	c.1343	p.T448I	0.810	pfam_Rap_GAP_dom,pfscan_Rap_GAP_dom	pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1	HGNC	ENSG00000213445	tier1	-	-	42	0	0.00	29	5	14.71	51	0	0.00	38	8	17.39
SLCO4A1	0	genome.wustl.edu	37	20	61290029	61290029	+	Missense_Mutation	SNP	C	C	T			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	20	61290029	61290029	C	T	SNP	SLCO4A1	ENST00000217159	human	ensembl	74_37	+1	known	missense	c.797	p.A266V	0.995	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO4A1	HGNC	ENSG00000101187	tier1	-	-	30	0	0.00	62	11	15.07	10	0	0.00	15	4	21.05
RYR2	0	genome.wustl.edu	37	1	237755055	237755055	+	Missense_Mutation	SNP	A	A	C			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	1	237755055	237755055	A	C	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.4171	p.T1391P	1.000	pfscan_B30.2/SPRY	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	tier1	-	-	54	0	0.00	25	8	24.24	64	0	0.00	59	10	14.49
TTL	0	genome.wustl.edu	37	2	113286955	113286955	+	R	SNP	G	G	A			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	2	113286955	113286955	G	A	SNP	TTL	ENST00000460450	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TTL	HGNC	ENSG00000114999	tier1	-	-	33	0	0.00	34	17	33.33	107	0	0.00	48	36	42.86
CEACAM18	0	genome.wustl.edu	37	19	51986521	51986521	+	Nonsense_Mutation	SNP	C	C	G			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	19	51986521	51986521	C	G	SNP	CEACAM18	ENST00000451626	human	ensembl	74_37	+1	known	nonsense	c.1107	p.Y369*	0.022	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	CEACAM18	HGNC	ENSG00000213822	tier1	-	-	49	0	0.00	61	17	21.79	46	0	0.00	45	22	32.84
TRPM2	0	genome.wustl.edu	37	21	45858991	45858991	+	Silent	SNP	G	G	A			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	21	45858991	45858991	G	A	SNP	TRPM2	ENST00000300482	human	ensembl	74_37	+1	known	silent	c.4209	p.K1403	0.903	superfamily_NUDIX_hydrolase_dom-like	pfam_Ion_trans_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	TRPM2	HGNC	ENSG00000142185	tier1	-	-	17	0	0.00	3	6	60.00	28	0	0.00	13	11	45.83
FRMPD4	0	genome.wustl.edu	37	X	12736058	12736058	+	Missense_Mutation	SNP	C	C	T			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	X	12736058	12736058	C	T	SNP	FRMPD4	ENST00000380682	human	ensembl	74_37	+1	known	missense	c.3113	p.A1038V	0.003	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_dom	-	no_errors	FRMPD4	HGNC	ENSG00000169933	tier1	-	-	15	0	0.00	5	13	72.22	65	0	0.00	27	57	67.86
NPAP1	0	genome.wustl.edu	37	15	24923532	24923532	+	Missense_Mutation	SNP	T	T	A			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	15	24923532	24923532	T	A	SNP	NPAP1	ENST00000329468	human	ensembl	74_37	+1	known	missense	c.2518	p.F840I	0.000	NULL	NULL	-	no_errors	NPAP1	HGNC	ENSG00000185823	tier1	-	-	42	0	0.00	37	10	21.28	101	0	0.00	61	24	28.24
RYR1	0	genome.wustl.edu	37	19	38959746	38959746	+	Silent	SNP	C	C	T			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	19	38959746	38959746	C	T	SNP	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	silent	c.3522	p.S1174	0.032	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	tier1	-	-	11	0	0.00	26	8	23.53	57	0	0.00	140	16	10.26
PYCRL	0	genome.wustl.edu	37	8	144688241	144688241	+	Silent	SNP	C	C	T			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	8	144688241	144688241	C	T	SNP	PYCRL	ENST00000220966	human	ensembl	74_37	-1	known	silent	c.669	p.Q223	1.000	superfamily_6-PGluconate_DH_C-like,pirsf_Pyrroline-COOH_reductase,tigrfam_Pyrroline-COOH_reductase	superfamily_6-PGluconate_DH_C-like,pirsf_Pyrroline-COOH_reductase,tigrfam_Pyrroline-COOH_reductase	-	no_errors	PYCRL	HGNC	ENSG00000104524	tier1	-	-	37	0	0.00	27	4	12.50	18	0	0.00	15	3	16.67
SMARCAL1	0	genome.wustl.edu	37	2	217332750	217332750	+	Missense_Mutation	SNP	C	C	T			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	2	217332750	217332750	C	T	SNP	SMARCAL1	ENST00000357276	human	ensembl	74_37	+1	known	missense	c.2225	p.T742M	0.016	superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_HARP_dom,pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCAL1	HGNC	ENSG00000138375	tier1	rs2271336	GMAF=0.0005	46	0	0.00	33	7	17.50	120	0	0.00	48	21	30.43
CDH12	0	genome.wustl.edu	37	5	21854900	21854900	+	Splice_Site	SNP	C	C	A			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	5	21854900	21854900	C	A	SNP	CDH12	ENST00000382254	human	ensembl	74_37	-1	known	splice_site	c.527-1	e3-1	1.000	-	-	-	no_errors	CDH12	HGNC	ENSG00000154162	tier1	-	-	76	0	0.00	56	23	29.11	128	0	0.00	76	33	30.28
STRC	0	genome.wustl.edu	37	15	43893109	43893109	+	Missense_Mutation	SNP	C	C	T			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	15	43893109	43893109	C	T	SNP	STRC	ENST00000450892	human	ensembl	74_37	-1	known	missense	c.4805	p.R1602Q	0.985	NULL	NULL	-	no_errors	STRC	HGNC	ENSG00000242866	tier1	-	-	23	0	0.00	31	7	18.42	37	0	0.00	37	14	27.45
ID3	0	genome.wustl.edu	37	1	23885512	23885512	+	Splice_Site	SNP	T	T	C			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	1	23885512	23885512	T	C	SNP	ID3	ENST00000374561	human	ensembl	74_37	-1	known	splice_site	c.301-2	e2-2	0.997	-	-	-	no_errors	ID3	HGNC	ENSG00000117318	tier1	-	-	53	0	0.00	37	28	43.08	50	0	0.00	71	25	25.77
NOTUM	0	genome.wustl.edu	37	17	79916829	79916829	+	Nonsense_Mutation	SNP	C	C	T			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	17	79916829	79916829	C	T	SNP	NOTUM	ENST00000409678	human	ensembl	74_37	-1	known	nonsense	c.515	p.W172*	1.000	pfam_NOTUM	pfam_NOTUM	-	no_errors	NOTUM	HGNC	ENSG00000185269	tier1	-	-	46	0	0.00	52	11	17.46	60	0	0.00	76	29	27.36
MUC5B	0	genome.wustl.edu	37	11	1270805	1270805	+	Missense_Mutation	SNP	C	C	T			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	11	1270805	1270805	C	T	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	missense	c.12704	p.P4235L	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	tier1	-	-	24	0	0.00	50	9	15.25	37	0	0.00	24	10	29.41
UBE2O	0	genome.wustl.edu	37	17	74387533	74387533	+	Missense_Mutation	SNP	C	C	G			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	17	74387533	74387533	C	G	SNP	UBE2O	ENST00000319380	human	ensembl	74_37	-1	known	missense	c.3370	p.E1124Q	0.997	NULL	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2O	HGNC	ENSG00000175931	tier1	-	-	20	0	0.00	14	5	25.00	28	0	0.00	22	10	31.25
TMEM135	0	genome.wustl.edu	37	11	87024468	87024468	+	Missense_Mutation	SNP	G	G	A			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	11	87024468	87024468	G	A	SNP	TMEM135	ENST00000305494	human	ensembl	74_37	+1	known	missense	c.938	p.G313D	1.000	NULL	NULL	-	no_errors	TMEM135	HGNC	ENSG00000166575	tier1	-	-	92	0	0.00	44	25	36.23	80	0	0.00	43	14	24.56
UNC79	0	genome.wustl.edu	37	14	93995662	93995662	+	Silent	SNP	T	T	A			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	14	93995662	93995662	T	A	SNP	UNC79	ENST00000553484	human	ensembl	74_37	+1	known	silent	c.1083	p.L361	1.000	NULL	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	-	no_errors	UNC79	HGNC	ENSG00000133958	tier1	-	-	72	0	0.00	36	20	35.71	108	0	0.00	52	23	30.67
XPO6	0	genome.wustl.edu	37	16	28113177	28113177	+	Silent	SNP	C	C	G			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	16	28113177	28113177	C	G	SNP	XPO6	ENST00000304658	human	ensembl	74_37	-1	known	silent	c.3036	p.L1012	0.974	superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO6	HGNC	ENSG00000169180	tier1	-	-	51	0	0.00	52	12	18.75	82	1	1.20	57	17	22.97
CDH8	0	genome.wustl.edu	37	16	61687551	61687551	+	Silent	SNP	G	G	A			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	16	61687551	61687551	G	A	SNP	CDH8	ENST00000577390	human	ensembl	74_37	-1	known	silent	c.2361	p.G787	0.524	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH8	HGNC	ENSG00000150394	tier1	-	-	35	0	0.00	24	7	22.58	71	0	0.00	50	11	18.03
PPFIA2	0	genome.wustl.edu	37	12	81734962	81734962	+	Missense_Mutation	SNP	C	C	G			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	12	81734962	81734962	C	G	SNP	PPFIA2	ENST00000549396	human	ensembl	74_37	-1	known	missense	c.2288	p.R763P	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA2	HGNC	ENSG00000139220	tier1	-	-	66	0	0.00	40	23	36.51	127	0	0.00	81	45	35.43
NDUFV1	0	genome.wustl.edu	37	11	67378983	67378983	+	Silent	SNP	G	G	A			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	11	67378983	67378983	G	A	SNP	NDUFV1	ENST00000322776	human	ensembl	74_37	+1	known	silent	c.1023	p.A341	0.111	tigrfam_DH-UbQ_OxRdtase_suF	pfam_DH_UbQ_OxRdtase_51kDa_su,pfam_DH-UbQ_OxRdtase_Fsu_4Fe4S-bd,pfam_Soluble_ligand-bd,smart_DH-UbQ_OxRdtase_Fsu_4Fe4S-bd,tigrfam_DH-UbQ_OxRdtase_suF	-	no_errors	NDUFV1	HGNC	ENSG00000167792	tier1	-	-	43	0	0.00	23	18	43.90	55	0	0.00	23	12	34.29
RAPH1	0	genome.wustl.edu	37	2	204304534	204304534	+	Missense_Mutation	SNP	G	G	A			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	2	204304534	204304534	G	A	SNP	RAPH1	ENST00000374493	human	ensembl	74_37	-1	known	missense	c.3535	p.R1179W	1.000	NULL	pfam_Ras-assoc,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Ras-assoc,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,prints_Paxillin	-	no_errors	RAPH1	HGNC	ENSG00000173166	tier1	rs144033630	-	19	0	0.00	20	4	16.67	103	0	0.00	42	20	32.26
TTC30B	0	genome.wustl.edu	37	2	178417110	178417110	+	Missense_Mutation	SNP	C	C	T			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	2	178417110	178417110	C	T	SNP	TTC30B	ENST00000408939	human	ensembl	74_37	-1	known	missense	c.382	p.D128N	0.989	NULL	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC30B	HGNC	ENSG00000196659	tier1	-	-	22	0	0.00	28	18	39.13	40	0	0.00	15	8	34.78
RSPH4A	0	genome.wustl.edu	37	6	116949368	116949368	+	Missense_Mutation	SNP	C	C	G			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	6	116949368	116949368	C	G	SNP	RSPH4A	ENST00000229554	human	ensembl	74_37	+1	known	missense	c.1498	p.L500V	0.958	pfam_Radial_spoke	pfam_Radial_spoke	-	no_errors	RSPH4A	HGNC	ENSG00000111834	tier1	-	-	15	0	0.00	17	11	39.29	78	0	0.00	38	26	40.62
RNF150	0	genome.wustl.edu	37	4	141888986	141888986	+	Missense_Mutation	SNP	C	C	T			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	4	141888986	141888986	C	T	SNP	RNF150	ENST00000515673	human	ensembl	74_37	-1	known	missense	c.526	p.G176R	1.000	pfam_Protease-assoc_domain	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF150	HGNC	ENSG00000170153	tier1	-	-	57	0	0.00	59	19	24.36	110	0	0.00	78	27	25.71
TP53	0	genome.wustl.edu	37	17	7577556	7577556	+	Missense_Mutation	SNP	C	C	G			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	17	7577556	7577556	C	G	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.725	p.C242S	1.000	pfam_p53_D-bd,superfamily_p53-like_TF_D-bd,prints_p53_tumour_suppressor	pfam_p53_D-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_D-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	52	0	0.00	5	37	88.10	67	0	0.00	15	35	70.00
KIF17	0	genome.wustl.edu	37	1	21042109	21042109	+	Silent	SNP	G	G	A			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	1	21042109	21042109	G	A	SNP	KIF17	ENST00000247986	human	ensembl	74_37	-1	known	silent	c.255	p.G85	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF17	HGNC	ENSG00000117245	tier1	-	-	42	0	0.00	37	10	21.28	23	0	0.00	16	2	11.11
TLR3	0	genome.wustl.edu	37	4	187004218	187004218	+	Missense_Mutation	SNP	G	G	A			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	4	187004218	187004218	G	A	SNP	TLR3	ENST00000296795	human	ensembl	74_37	+1	known	missense	c.1378	p.E460K	0.990	NULL	pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR3	HGNC	ENSG00000164342	tier1	rs144550375	-	37	0	0.00	4	21	84.00	97	0	0.00	24	50	67.57
PCDH1	0	genome.wustl.edu	37	5	141248186	141248186	+	Missense_Mutation	SNP	G	G	A			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	5	141248186	141248186	G	A	SNP	PCDH1	ENST00000287008	human	ensembl	74_37	-1	known	missense	c.851	p.S284F	0.228	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH1	HGNC	ENSG00000156453	tier1	-	-	28	0	0.00	26	40	60.61	24	0	0.00	24	43	64.18
DCAF4L2	0	genome.wustl.edu	37	8	88885986	88885986	+	Missense_Mutation	SNP	C	C	T			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	8	88885986	88885986	C	T	SNP	DCAF4L2	ENST00000319675	human	ensembl	74_37	-1	known	missense	c.214	p.D72N	0.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4L2	HGNC	ENSG00000176566	tier1	-	-	56	0	0.00	39	18	31.58	85	0	0.00	28	31	52.54
TRDN	0	genome.wustl.edu	37	6	123892185	123892185	+	Missense_Mutation	SNP	C	C	T			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	6	123892185	123892185	C	T	SNP	TRDN	ENST00000398178	human	ensembl	74_37	-1	known	missense	c.115	p.D39N	1.000	NULL	pfam_Asp-B-hydro/Triadin_dom	-	no_errors	TRDN	HGNC	ENSG00000186439	tier1	-	-	34	0	0.00	43	45	51.14	96	0	0.00	70	69	49.29
RABEP1	0	genome.wustl.edu	37	17	5241402	5241413	+	In_Frame_Del	DEL	AAGACAAAATTA	AAGACAAAATTA	-			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	AAGACAAAATTA	AAGACAAAATTA	AAGACAAAATTA	-	AAGACAAAATTA	AAGACAAAATTA	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	17	5241402	5241413	AAGACAAAATTA	-	DEL	RABEP1	ENST00000262477	human	ensembl	74_37	+1	known	in_frame_del	c.617_628	p.DKIK207in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:0.997:0.974:0.997:1.000:0.998:1.000	NULL	pfam_Rabaptin_coiled-coil,pfam_Rabaptin_Rab5-bd_dom,prints_Rabaptin	-	no_errors	RABEP1	HGNC	ENSG00000029725	tier1			133	0	0.00	69	10	12.66	133	0	0.00	69	10	12.66
CREBBP	0	genome.wustl.edu	37	16	3819196	3819196	+	Frame_Shift_Del	DEL	G	G	-			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	16	3819196	3819196	G	-	DEL	CREBBP	ENST00000262367	human	ensembl	74_37	-1	known	frame_shift_del	c.3039	p.E1016fs	0.279	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339	tier1			18	0	0.00	42	8	16.00	53	0	0.00	69	25	26.60
RAB38	0	genome.wustl.edu	37	11	87882881	87882881	+	Frame_Shift_Del	DEL	C	C	-			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	11	87882881	87882881	C	-	DEL	RAB38	ENST00000243662	human	ensembl	74_37	-1	known	frame_shift_del	c.445	p.E149fs	1.000	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB38	HGNC	ENSG00000123892	tier1			51	0	0.00	46	10	17.86	98	0	0.00	62	11	15.07
TET2	0	genome.wustl.edu	37	4	106196943	106196945	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	CTT	CTT	CTT	-	CTT	CTT	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	4	106196943	106196945	CTT	-	DEL	TET2	ENST00000380013	human	ensembl	74_37	+1	known	in_frame_del	c.5276_5278	p.S1760in_frame_del	0.019:0.003:0.005	NULL	NULL	-	no_errors	TET2	HGNC	ENSG00000168769	tier1			13	0	0.00	11	2	15.38	109	0	0.00	69	13	15.85
RNF25	0	genome.wustl.edu	37	2	219529965	219529965	+	Frame_Shift_Del	DEL	T	T	-			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	2	219529965	219529965	T	-	DEL	RNF25	ENST00000295704	human	ensembl	74_37	-1	known	frame_shift_del	c.579	p.V194fs	0.233	smart_Znf_RING,pfscan_Znf_RING	pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,smart_Znf_RING,pfscan_RWD-domain,pfscan_Znf_RING	-	no_errors	RNF25	HGNC	ENSG00000163481	tier1			46	0	0.00	22	3	12.00	79	0	0.00	32	10	23.81
ITGA10	0	genome.wustl.edu	37	1	145532554	145532554	+	Missense_Mutation	SNP	A	A	G			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	1	145532554	145532554	A	G	SNP	ITGA10	ENST00000369304	human	ensembl	74_37	+1	known	missense	c.1007	p.N336S	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA10	HGNC	ENSG00000143127	tier1	-	-	24	0	0.00	5	30	85.71	32	0	0.00	9	76	88.37
SERBP1	0	genome.wustl.edu	37	1	67891960	67891960	+	Nonsense_Mutation	SNP	G	G	A			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	1	67891960	67891960	G	A	SNP	SERBP1	ENST00000370995	human	ensembl	74_37	-1	known	nonsense	c.322	p.R108*	1.000	NULL	pfam_HABP4_PAIRBP1-bd	-	no_errors	SERBP1	HGNC	ENSG00000142864	tier1	-	-	39	0	0.00	5	27	84.38	59	1	1.67	8	30	78.95
TJP2	0	genome.wustl.edu	37	9	71836181	71836181	+	Missense_Mutation	SNP	C	C	T			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	9	71836181	71836181	C	T	SNP	TJP2	ENST00000539225	human	ensembl	74_37	+1	known	missense	c.814	p.R272C	0.404	NULL	pfam_PDZ,pfam_GK/Ca_channel_bsu,pfam_SH3_2,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_PDZ,smart_GK/Ca_channel_bsu,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like,prints_ZonOcculS2,prints_ZonOcculdens	-	no_errors	TJP2	HGNC	ENSG00000119139	tier1	-	-	8	0	0.00	18	5	21.74	13	0	0.00	8	8	50.00
TPTEP1	0	genome.wustl.edu	37	22	17178996	17178996	+	R	SNP	C	C	T			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	22	17178996	17178996	C	T	SNP	TPTEP1	ENST00000558085	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	TPTEP1	HGNC	ENSG00000100181	tier1	-	-	68	0	0.00	44	48	51.06	13	0	0.00	5	7	58.33
GPR149	0	genome.wustl.edu	37	3	154055871	154055871	+	Missense_Mutation	SNP	C	C	T			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	3	154055871	154055871	C	T	SNP	GPR149	ENST00000389740	human	ensembl	74_37	-1	known	missense	c.1813	p.D605N	1.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR149	HGNC	ENSG00000174948	tier1	-	-	51	0	0.00	44	6	12.00	93	0	0.00	64	6	8.57
ENSG00000226145	0	genome.wustl.edu	37	17	16722293	16722293	+	R	SNP	C	C	G			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	17	16722293	16722293	C	G	SNP	ENSG00000226145	ENST00000417510	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AC022596.6	Clone_based_vega_gene	ENSG00000226145	tier1	-	-	105	0	0.00	118	14	10.61	54	0	0.00	87	7	7.45
ENSG00000258364	0	genome.wustl.edu	37	14	19412607	19412607	+	R	SNP	C	C	T			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	14	19412607	19412607	C	T	SNP	ENSG00000258364	ENST00000550928	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.035	-	-	-	no_errors	RP11-536C10.16	Clone_based_vega_gene	ENSG00000258364	tier1	-	-	45	0	0.00	58	21	26.58	48	0	0.00	73	7	8.75
SUPT16H	0	genome.wustl.edu	37	14	21830470	21830470	+	Missense_Mutation	SNP	G	G	A			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	14	21830470	21830470	G	A	SNP	SUPT16H	ENST00000216297	human	ensembl	74_37	-1	known	missense	c.1679	p.S560F	1.000	pfam_FACT_Spt16p	pfam_FACT_Spt16p,pfam_Pept_M24_structural-domain,pfam_DUF1747,superfamily_Pept_M24_structural-domain	-	no_errors	SUPT16H	HGNC	ENSG00000092201	tier1	-	-	40	0	0.00	64	8	11.11	46	0	0.00	78	4	4.88
ATF4P4	0	genome.wustl.edu	37	11	113660099	113660099	+	R	SNP	G	G	A			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	11	113660099	113660099	G	A	SNP	ATF4P4	ENST00000393544	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ATF4P4	HGNC	ENSG00000256167	tier1	-	-	30	0	0.00	23	7	23.33	4	0	0.00	2	0	0.00
ENSG00000216020	0	genome.wustl.edu	37	3	191693768	191693773	+	R	DEL	GTGTGC	GTGTGC	-			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	GTGTGC	GTGTGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	3	191693768	191693773	GTGTGC	-	DEL	ENSG00000216020	ENST00000401201	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.008:0.009:0.008:0.008:0.006:0.005	-	-	-	no_errors	AC026320.1	Clone_based_ensembl_gene	ENSG00000216020	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
LHCGR	0	genome.wustl.edu	37	2	48982775	48982777	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	2	48982775	48982777	CTT	-	DEL	LHCGR	ENST00000294954	human	ensembl	74_37	-1	known	in_frame_del	c.36_34	p.K12in_frame_del	0.000:0.000:0.000	prints_TSH_rcpt	pfam_GPCR_Rhodpsn,prints_LSH_rcpt,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn,prints_TSH_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	LHCGR	HGNC	ENSG00000138039	tier1			11	0	0.00	12	6	33.33	2	0	0.00	3	0	0.00
MAGEL2	0	genome.wustl.edu	37	15	23890952	23890952	+	Silent	SNP	C	C	T			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	15	23890952	23890952	C	T	SNP	MAGEL2	ENST00000532292	human	ensembl	74_37	-1	known	silent	c.129	p.E43	1.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEL2	HGNC	ENSG00000254585	tier1	-	-	22	0	0.00	5	15	75.00	0	0	0.00	0	1	100.00
NRXN1	0	genome.wustl.edu	37	2	50147836	50147845	+	R	DEL	GTGTGTGTGT	GTGTGTGTGT	-			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	GTGTGTGTGT	GTGTGTGTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	2	50147836	50147845	GTGTGTGTGT	-	DEL	NRXN1	ENST00000484192	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.001:0.005:0.106:0.113:0.127:0.107:0.109:0.093:0.096	-	-	-	no_errors	NRXN1	HGNC	ENSG00000179915	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
ZNF257	0	genome.wustl.edu	37	19	22271217	22271217	+	Missense_Mutation	SNP	C	C	G			TCGA-QC-A6FX-01A-11D-A32I-09	TCGA-QC-A6FX-10B-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fcd49624-3dbe-45eb-8820-7e13da9cdcaa	2cdf6c47-3638-4511-8a87-1247ddcbaccb	19	22271217	22271217	C	G	SNP	ZNF257	ENST00000594947	human	ensembl	74_37	+1	known	missense	c.665	p.T222S	0.007	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF257	HGNC	ENSG00000197134	tier1	-	-	35	0	0.00	46	16	25.81	4	0	0.00	0	1	100.00
