Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
CILP2	0	genome.wustl.edu	37	19	19654173	19654173	+	Missense_Mutation	SNP	C	C	T			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	19	19654173	19654173	C	T	SNP	CILP2	ENST00000291495	human	ensembl	74_37	+1	known	missense	c.1094	p.A365V	0.700	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,superfamily_Thrombospondin_1_rpt,superfamily_CarboxyPept-like_regulatory,superfamily_Carb-bd-like_fold,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	CILP2	HGNC	ENSG00000160161	tier1	-	-	60	0	0.00	132	19	12.58	27	0	0.00	25	5	16.67
COBL	0	genome.wustl.edu	37	7	51096413	51096413	+	Missense_Mutation	SNP	T	T	A			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	7	51096413	51096413	T	A	SNP	COBL	ENST00000395542	human	ensembl	74_37	-1	known	missense	c.2626	p.T876S	0.000	NULL	pfam_Cordon-bleu_ubiquitin_domain,pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	COBL	HGNC	ENSG00000106078	tier1	-	-	23	0	0.00	28	21	42.00	60	0	0.00	39	27	40.91
IFT27	0	genome.wustl.edu	37	22	37154392	37154392	+	Missense_Mutation	SNP	T	T	A			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	22	37154392	37154392	T	A	SNP	IFT27	ENST00000433985	human	ensembl	74_37	-1	known	missense	c.524	p.Y175F	1.000	superfamily_P-loop_NTPase	pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	IFT27	HGNC	ENSG00000100360	tier1	-	-	74	0	0.00	126	31	19.62	130	0	0.00	131	27	16.98
KRT26	0	genome.wustl.edu	37	17	38928025	38928025	+	Missense_Mutation	SNP	T	T	G			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	17	38928025	38928025	T	G	SNP	KRT26	ENST00000335552	human	ensembl	74_37	-1	known	missense	c.341	p.K114T	1.000	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT26	HGNC	ENSG00000186393	tier1	-	-	40	0	0.00	41	8	16.33	38	0	0.00	18	2	10.00
ZSCAN5B	0	genome.wustl.edu	37	19	56701298	56701298	+	Silent	SNP	G	G	A			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	19	56701298	56701298	G	A	SNP	ZSCAN5B	ENST00000358992	human	ensembl	74_37	-1	known	silent	c.1386	p.S462	0.000	pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN5B	HGNC	ENSG00000197213	tier1	-	-	80	0	0.00	66	37	35.92	120	1	0.83	75	34	30.91
RIMS2	0	genome.wustl.edu	37	8	104709367	104709367	+	Missense_Mutation	SNP	A	A	C			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	8	104709367	104709367	A	C	SNP	RIMS2	ENST00000406091	human	ensembl	74_37	+1	known	missense	c.230	p.E77A	1.000	superfamily_Znf_FYVE_PHD,pfscan_Znf_FYVE-typ	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406	tier1	-	-	45	0	0.00	83	13	13.54	95	0	0.00	118	23	16.31
ENSG00000223730	0	genome.wustl.edu	37	22	45297795	45297795	+	R	SNP	G	G	C			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	22	45297795	45297795	G	C	SNP	ENSG00000223730	ENST00000431036	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP1-127B20.4	Clone_based_vega_gene	ENSG00000223730	tier1	-	-	10	0	0.00	44	8	15.38	83	1	1.19	83	31	26.96
CCDC144A	0	genome.wustl.edu	37	17	16623536	16623536	+	Silent	SNP	A	A	G			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	17	16623536	16623536	A	G	SNP	CCDC144A	ENST00000360524	human	ensembl	74_37	+1	known	silent	c.1740	p.E580	0.957	NULL	pfam_DUF3496	-	no_errors	CCDC144A	HGNC	ENSG00000170160	tier1	-	-	51	0	0.00	123	20	13.99	81	0	0.00	75	17	18.48
GRSF1	0	genome.wustl.edu	37	4	71686565	71686565	+	R	SNP	C	C	A			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	4	71686565	71686565	C	A	SNP	GRSF1	ENST00000508091	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	GRSF1	HGNC	ENSG00000132463	tier1	-	-	32	0	0.00	33	35	51.47	91	0	0.00	45	71	61.21
INO80C	0	genome.wustl.edu	37	18	33048664	33048664	+	Missense_Mutation	SNP	T	T	C			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	18	33048664	33048664	T	C	SNP	INO80C	ENST00000441607	human	ensembl	74_37	-1	known	missense	c.598	p.I200V	0.138	pfam_YL1_C	pfam_YL1_C	-	no_errors	INO80C	HGNC	ENSG00000153391	tier1	-	-	80	0	0.00	79	47	37.01	98	0	0.00	29	32	52.46
FBN1	0	genome.wustl.edu	37	15	48826356	48826356	+	Missense_Mutation	SNP	A	A	T			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	15	48826356	48826356	A	T	SNP	FBN1	ENST00000316623	human	ensembl	74_37	-1	known	missense	c.783	p.N261K	1.000	pfam_EGF-like_Ca-bd_dom,superfamily_TB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147	tier1	-	-	54	0	0.00	97	12	11.01	55	0	0.00	48	6	11.11
MACF1	0	genome.wustl.edu	37	1	39765937	39765937	+	Missense_Mutation	SNP	G	G	A			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	1	39765937	39765937	G	A	SNP	MACF1	ENST00000317713	human	ensembl	74_37	+1	known	missense	c.2552	p.R851K	1.000	NULL	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	MACF1	HGNC	ENSG00000127603	tier1	-	-	38	0	0.00	72	16	18.18	86	0	0.00	81	18	17.82
MIR3907	0	genome.wustl.edu	37	7	151130689	151130689	+	R	SNP	G	G	A			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	7	151130689	151130689	G	A	SNP	MIR3907	ENST00000579424	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIR3907	HGNC	ENSG00000265810	tier1	-	-	122	1	0.81	153	112	42.26	72	0	0.00	36	12	25.00
OR56B1	0	genome.wustl.edu	37	11	5757842	5757842	+	Missense_Mutation	SNP	G	G	C			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	11	5757842	5757842	G	C	SNP	OR56B1	ENST00000317121	human	ensembl	74_37	+1	known	missense	c.96	p.W32C	1.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR56B1	HGNC	ENSG00000181023	tier1	-	-	31	0	0.00	51	21	29.17	87	0	0.00	70	28	28.57
ETV7	0	genome.wustl.edu	37	6	36353379	36353379	+	Missense_Mutation	SNP	T	T	C			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	6	36353379	36353379	T	C	SNP	ETV7	ENST00000340181	human	ensembl	74_37	-1	known	missense	c.74	p.Q25R	0.008	superfamily_SAM/pointed	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ETV7	HGNC	ENSG00000010030	tier1	-	-	26	0	0.00	20	10	33.33	86	0	0.00	34	32	48.48
MIR520A	0	genome.wustl.edu	37	19	54194150	54194150	+	R	SNP	T	T	C			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	19	54194150	54194150	T	C	SNP	MIR520A	ENST00000384862	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.120	-	-	-	no_errors	MIR520A	HGNC	ENSG00000207594	tier1	-	-	96	0	0.00	115	52	31.14	27	0	0.00	18	6	25.00
ALOXE3	0	genome.wustl.edu	37	17	8006780	8006780	+	Missense_Mutation	SNP	G	G	T			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	17	8006780	8006780	G	T	SNP	ALOXE3	ENST00000318227	human	ensembl	74_37	-1	known	missense	c.2213	p.P738Q	1.000	pfam_LipOase_C,superfamily_LipOase_C	pfam_LipOase_C,pfam_PLAT/LH2_dom,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,prints_LipOase_C	-	no_errors	ALOXE3	HGNC	ENSG00000179148	tier1	-	-	73	0	0.00	82	21	20.39	76	0	0.00	95	24	20.17
PRRC2B	0	genome.wustl.edu	37	9	134343099	134343099	+	Missense_Mutation	SNP	C	C	A			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	9	134343099	134343099	C	A	SNP	PRRC2B	ENST00000357304	human	ensembl	74_37	+1	known	missense	c.1870	p.L624I	0.445	NULL	pfam_BAT2_N	-	no_errors	PRRC2B	HGNC	ENSG00000130723	tier1	-	-	70	0	0.00	61	32	34.41	97	0	0.00	38	14	26.92
WIPF3	0	genome.wustl.edu	37	7	29874401	29874401	+	Missense_Mutation	SNP	C	C	T			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	7	29874401	29874401	C	T	SNP	WIPF3	ENST00000242140	human	ensembl	74_37	+1	known	missense	c.61	p.P21S	1.000	NULL	pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WIPF3	HGNC	ENSG00000122574	tier1	-	-	106	1	0.93	203	63	23.60	36	0	0.00	27	11	28.95
IGLON5	0	genome.wustl.edu	37	19	51827072	51827072	+	Silent	SNP	C	C	T			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	19	51827072	51827072	C	T	SNP	IGLON5	ENST00000270642	human	ensembl	74_37	+1	known	silent	c.315	p.G105	0.653	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	IGLON5	HGNC	ENSG00000142549	tier1	-	-	60	0	0.00	83	10	10.75	48	0	0.00	25	7	21.88
ZNF615	0	genome.wustl.edu	37	19	52497670	52497670	+	Missense_Mutation	SNP	A	A	G			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	19	52497670	52497670	A	G	SNP	ZNF615	ENST00000594083	human	ensembl	74_37	-1	known	missense	c.692	p.I231T	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF615	HGNC	ENSG00000197619	tier1	-	-	40	0	0.00	54	20	27.03	65	0	0.00	45	15	25.00
PCLO	0	genome.wustl.edu	37	7	82578814	82578814	+	Missense_Mutation	SNP	A	A	T			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	7	82578814	82578814	A	T	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.11090	p.F3697Y	1.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	tier1	-	-	38	0	0.00	46	24	34.29	112	1	0.88	75	26	25.74
SPATA31D1	0	genome.wustl.edu	37	9	84607869	84607869	+	Silent	SNP	T	T	C			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	9	84607869	84607869	T	C	SNP	SPATA31D1	ENST00000344803	human	ensembl	74_37	+1	known	silent	c.2484	p.N828	0.000	NULL	NULL	-	no_errors	SPATA31D1	HGNC	ENSG00000214929	tier1	-	-	52	0	0.00	73	85	53.80	98	0	0.00	55	47	45.63
HERC3	0	genome.wustl.edu	37	4	89574169	89574169	+	Silent	SNP	C	C	T			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	4	89574169	89574169	C	T	SNP	HERC3	ENST00000264345	human	ensembl	74_37	+1	known	silent	c.613	p.L205	1.000	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,pfam_HECT,superfamily_HECT,superfamily_RCC1/BLIP-II,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC3	HGNC	ENSG00000138641	tier1	-	-	52	0	0.00	67	42	38.53	68	0	0.00	40	30	42.86
RIOK1	0	genome.wustl.edu	37	6	7398933	7398933	+	Missense_Mutation	SNP	A	A	G			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	6	7398933	7398933	A	G	SNP	RIOK1	ENST00000379834	human	ensembl	74_37	+1	known	missense	c.440	p.Y147C	1.000	pirsf_Ser/Thr_kinase_Rio1	pfam_RIO-like_kinase,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_RIO_kinase,pirsf_Ser/Thr_kinase_Rio1	-	no_errors	RIOK1	HGNC	ENSG00000124784	tier1	-	-	37	0	0.00	36	35	49.30	104	0	0.00	50	26	34.21
WDR64	0	genome.wustl.edu	37	1	241907737	241907737	+	Nonsense_Mutation	SNP	G	G	T			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	1	241907737	241907737	G	T	SNP	WDR64	ENST00000366552	human	ensembl	74_37	+1	known	nonsense	c.1483	p.E495*	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR64	HGNC	ENSG00000162843	tier1	-	-	63	0	0.00	11	59	84.29	74	1	1.33	10	28	73.68
XIRP2	0	genome.wustl.edu	37	2	168108404	168108404	+	Missense_Mutation	SNP	C	C	A			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	2	168108404	168108404	C	A	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	missense	c.10502	p.A3501D	0.128	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092	tier1	-	-	49	0	0.00	38	4	9.52	83	0	0.00	56	9	13.85
VWCE	0	genome.wustl.edu	37	11	61058764	61058764	+	Missense_Mutation	SNP	C	C	G			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	11	61058764	61058764	C	G	SNP	VWCE	ENST00000335613	human	ensembl	74_37	-1	known	missense	c.267	p.Q89H	0.998	smart_EG-like_dom	pfam_VWF_C,pfam_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_VWF_C,smart_VWC_out,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	VWCE	HGNC	ENSG00000167992	tier1	-	-	39	0	0.00	46	12	20.69	93	1	1.06	37	28	43.08
C6orf163	0	genome.wustl.edu	37	6	88054895	88054895	+	Silent	SNP	A	A	G			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	6	88054895	88054895	A	G	SNP	C6orf163	ENST00000388923	human	ensembl	74_37	+1	known	silent	c.78	p.G26	0.309	NULL	NULL	-	no_errors	C6orf163	HGNC	ENSG00000203872	tier1	-	-	52	0	0.00	137	13	8.67	108	0	0.00	99	18	15.38
FRAS1	0	genome.wustl.edu	37	4	79461845	79461845	+	Missense_Mutation	SNP	T	T	C			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	4	79461845	79461845	T	C	SNP	FRAS1	ENST00000264895	human	ensembl	74_37	+1	known	missense	c.11606	p.I3869T	1.000	NULL	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EG-like_dom,smart_Calx_beta,pfscan_VWF_C	-	no_errors	FRAS1	HGNC	ENSG00000138759	tier1	-	-	16	0	0.00	34	15	30.61	96	0	0.00	56	22	28.21
RGS18	0	genome.wustl.edu	37	1	192127851	192127851	+	Silent	SNP	A	A	T			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	1	192127851	192127851	A	T	SNP	RGS18	ENST00000367460	human	ensembl	74_37	+1	known	silent	c.84	p.S28	0.752	NULL	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS18	HGNC	ENSG00000150681	tier1	-	-	36	0	0.00	138	21	13.21	98	0	0.00	242	61	20.13
ANKRD28	0	genome.wustl.edu	37	3	15711767	15711767	+	R	SNP	C	C	T			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	3	15711767	15711767	C	T	SNP	ANKRD28	ENST00000497037	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	ANKRD28	HGNC	ENSG00000206560	tier1	-	-	26	0	0.00	31	21	39.62	75	0	0.00	44	23	34.33
CEP89	0	genome.wustl.edu	37	19	33428567	33428567	+	Missense_Mutation	SNP	G	G	A			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	19	33428567	33428567	G	A	SNP	CEP89	ENST00000305768	human	ensembl	74_37	-1	known	missense	c.637	p.P213S	0.008	NULL	NULL	-	no_errors	CEP89	HGNC	ENSG00000121289	tier1	-	-	110	0	0.00	121	59	32.78	115	0	0.00	83	44	34.38
FBN1	0	genome.wustl.edu	37	15	48826355	48826355	+	Missense_Mutation	SNP	A	A	T			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	15	48826355	48826355	A	T	SNP	FBN1	ENST00000316623	human	ensembl	74_37	-1	known	missense	c.784	p.C262S	1.000	pfam_EGF-like_Ca-bd_dom,superfamily_TB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147	tier1	-	-	54	0	0.00	98	12	10.91	56	0	0.00	48	6	11.11
GALNT1	0	genome.wustl.edu	37	18	33234543	33234543	+	R	SNP	A	A	G			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	18	33234543	33234543	A	G	SNP	GALNT1	ENST00000586725	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	GALNT1	HGNC	ENSG00000141429	tier1	-	-	26	0	0.00	7	7	50.00	20	0	0.00	21	8	27.59
IGHV1OR21-1	0	genome.wustl.edu	37	21	10862964	10862964	+	Missense_Mutation	SNP	T	T	C			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	21	10862964	10862964	T	C	SNP	IGHV1OR21-1	ENST00000559480	human	ensembl	74_37	+1	known	missense	c.260	p.V87A	0.929	pfam_Ig_V-set,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGHV1OR21-1	HGNC	ENSG00000169861	tier1	-	-	145	0	0.00	211	57	21.27	33	0	0.00	31	7	18.42
PHF13	0	genome.wustl.edu	37	1	6682484	6682484	+	R	SNP	C	C	T			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	1	6682484	6682484	C	T	SNP	PHF13	ENST00000495385	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	PHF13	HGNC	ENSG00000116273	tier1	-	-	34	0	0.00	72	29	28.71	69	0	0.00	63	13	17.11
MDM1	0	genome.wustl.edu	37	12	68707424	68707424	+	Missense_Mutation	SNP	C	C	A			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	12	68707424	68707424	C	A	SNP	MDM1	ENST00000303145	human	ensembl	74_37	-1	known	missense	c.1609	p.G537C	1.000	NULL	NULL	-	no_errors	MDM1	HGNC	ENSG00000111554	tier1	-	-	44	0	0.00	34	49	59.04	121	0	0.00	53	60	53.10
AGRN	0	genome.wustl.edu	37	1	982235	982235	+	Missense_Mutation	SNP	C	C	A			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	1	982235	982235	C	A	SNP	AGRN	ENST00000379370	human	ensembl	74_37	+1	known	missense	c.3286	p.P1096T	0.410	NULL	pfam_Laminin_G,pfam_Agrin_NtA,pfam_Kazal_dom,pfam_EGF_laminin,pfam_SEA_dom,pfam_EG-like_dom,superfamily_TIMP-like_OB-fold,superfamily_ConA-like_lec_gl_sf,smart_FacI_MAC,smart_Fol_N,smart_Kazal_dom,smart_EG-like_dom,smart_EGF_laminin,smart_SEA_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Agrin_NtA,pfscan_SEA_dom	-	no_errors	AGRN	HGNC	ENSG00000188157	tier1	-	-	42	0	0.00	75	25	25.00	26	0	0.00	8	6	42.86
C9orf16	0	genome.wustl.edu	37	9	130922685	130922685	+	R	SNP	C	C	G			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	9	130922685	130922685	C	G	SNP	C9orf16	ENST00000489240	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.959	-	-	-	no_errors	C9orf16	HGNC	ENSG00000171159	tier1	-	-	23	0	0.00	20	12	37.50	5	0	0.00	1	3	75.00
MAGEA4	0	genome.wustl.edu	37	X	151092443	151092443	+	Missense_Mutation	SNP	G	G	C			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	X	151092443	151092443	G	C	SNP	MAGEA4	ENST00000276344	human	ensembl	74_37	+1	known	missense	c.307	p.E103Q	0.000	NULL	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA4	HGNC	ENSG00000147381	tier1	-	-	21	0	0.00	8	39	82.98	41	0	0.00	5	20	80.00
SEC14L5	0	genome.wustl.edu	37	16	5047002	5047002	+	Silent	SNP	G	G	C			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	16	5047002	5047002	G	C	SNP	SEC14L5	ENST00000251170	human	ensembl	74_37	+1	known	silent	c.927	p.L309	0.690	superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_PRELI/MSF1,pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,superfamily_GOLD,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,pfscan_PRELI/MSF1,prints_CRAL-bd_toc_tran	-	no_errors	SEC14L5	HGNC	ENSG00000103184	tier1	-	-	39	0	0.00	2	23	92.00	48	0	0.00	6	19	76.00
TAF1C	0	genome.wustl.edu	37	16	84212906	84212906	+	Missense_Mutation	SNP	T	T	C			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	16	84212906	84212906	T	C	SNP	TAF1C	ENST00000378541	human	ensembl	74_37	-1	known	missense	c.2251	p.K751E	0.996	NULL	superfamily_WD40_repeat_dom	-	no_errors	TAF1C	HGNC	ENSG00000103168	tier1	-	-	14	0	0.00	13	11	45.83	9	0	0.00	8	7	46.67
TKTL1	0	genome.wustl.edu	37	X	153537793	153537793	+	Missense_Mutation	SNP	A	A	T			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	X	153537793	153537793	A	T	SNP	TKTL1	ENST00000369915	human	ensembl	74_37	+1	known	missense	c.349	p.S117C	1.000	pfam_Transketolase_N,pfam_DH_E1	pfam_Transketolase_N,pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,pfam_DH_E1,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	TKTL1	HGNC	ENSG00000007350	tier1	-	-	31	0	0.00	9	20	68.97	47	0	0.00	3	30	90.91
TMCO3	0	genome.wustl.edu	37	13	114150047	114150047	+	Missense_Mutation	SNP	C	C	T			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	13	114150047	114150047	C	T	SNP	TMCO3	ENST00000434316	human	ensembl	74_37	+1	known	missense	c.151	p.R51W	0.000	NULL	pfam_Cation/H_exchanger	-	no_errors	TMCO3	HGNC	ENSG00000150403	tier1	-	-	53	0	0.00	5	34	87.18	49	0	0.00	9	11	55.00
AOC4P	0	genome.wustl.edu	37	17	41020025	41020025	+	R	SNP	T	T	C			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	17	41020025	41020025	T	C	SNP	AOC4P	ENST00000562301	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.632	-	-	-	no_errors	AOC4P	HGNC	ENSG00000260105	tier1	-	-	43	0	0.00	31	7	18.42	85	0	0.00	55	4	6.78
SAP130	0	genome.wustl.edu	37	2	128783869	128783869	+	Missense_Mutation	SNP	C	C	T			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	2	128783869	128783869	C	T	SNP	SAP130	ENST00000357702	human	ensembl	74_37	-1	known	missense	c.76	p.E26K	1.000	NULL	NULL	-	no_errors	SAP130	HGNC	ENSG00000136715	tier1	-	-	87	0	0.00	95	17	15.18	77	0	0.00	79	7	8.14
LRP2	0	genome.wustl.edu	37	2	170060691	170060691	+	Silent	SNP	G	G	C			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	2	170060691	170060691	G	C	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	silent	c.7806	p.G2602	0.992	smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	tier1	-	-	36	0	0.00	45	6	11.76	75	0	0.00	50	4	7.41
ZSCAN23	0	genome.wustl.edu	37	6	28403655	28403655	+	Missense_Mutation	SNP	A	A	G			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	6	28403655	28403655	A	G	SNP	ZSCAN23	ENST00000289788	human	ensembl	74_37	-1	known	missense	c.389	p.L130P	1.000	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN23	HGNC	ENSG00000187987	tier1	-	-	30	0	0.00	49	8	14.04	73	0	0.00	58	4	6.45
MAN1C1	0	genome.wustl.edu	37	1	26085135	26085135	+	Missense_Mutation	SNP	G	G	C			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	1	26085135	26085135	G	C	SNP	MAN1C1	ENST00000374332	human	ensembl	74_37	+1	known	missense	c.982	p.G328R	1.000	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1C1	HGNC	ENSG00000117643	tier1	-	-	74	0	0.00	121	23	15.97	104	0	0.00	76	7	8.43
ITGA10	0	genome.wustl.edu	37	1	145528030	145528030	+	Silent	SNP	C	C	A			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	1	145528030	145528030	C	A	SNP	ITGA10	ENST00000369304	human	ensembl	74_37	+1	known	silent	c.267	p.G89	0.999	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA10	HGNC	ENSG00000143127	tier1	-	-	38	0	0.00	63	10	13.70	70	0	0.00	83	7	7.69
KHDRBS1	0	genome.wustl.edu	37	1	32508537	32508537	+	R	DEL	A	A	-			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	1	32508537	32508537	A	-	DEL	KHDRBS1	ENST00000307714	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.903	-	-	-	no_errors	KHDRBS1	HGNC	ENSG00000121774	tier1			32	0	0.00	61	10	14.08	52	1	1.89	69	5	6.76
SIMC1	0	genome.wustl.edu	37	5	175717627	175717627	+	Missense_Mutation	SNP	C	C	T			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	5	175717627	175717627	C	T	SNP	SIMC1	ENST00000443967	human	ensembl	74_37	+1	known	missense	c.1043	p.P348L	0.007	NULL	NULL	-	no_errors	SIMC1	HGNC	ENSG00000170085	tier1	rs151017862	-	42	0	0.00	45	12	21.05	102	2	1.92	43	12	21.82
ANKRD12	0	genome.wustl.edu	37	18	9256918	9256918	+	Missense_Mutation	SNP	C	C	T			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	18	9256918	9256918	C	T	SNP	ANKRD12	ENST00000262126	human	ensembl	74_37	+1	known	missense	c.3653	p.T1218I	0.998	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD12	HGNC	ENSG00000101745	tier1	-	-	45	0	0.00	44	25	36.23	111	2	1.77	49	27	35.53
PDE6A	0	genome.wustl.edu	37	5	149245772	149245772	+	Silent	SNP	T	T	C			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	5	149245772	149245772	T	C	SNP	PDE6A	ENST00000255266	human	ensembl	74_37	-1	known	silent	c.2319	p.Q773	1.000	pfam_PDEase_catalytic_dom	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6A	HGNC	ENSG00000132915	tier1	-	-	57	0	0.00	42	34	44.74	142	2	1.39	46	35	43.21
FAM157B	0	genome.wustl.edu	37	9	141124247	141124247	+	R	SNP	A	A	G			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	9	141124247	141124247	A	G	SNP	FAM157B	ENST00000540522	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.024	-	-	-	no_errors	FAM157B	HGNC	ENSG00000233013	tier1	-	-	47	0	0.00	4	4	50.00	27	0	0.00	6	0	0.00
CARD10	0	genome.wustl.edu	37	22	37906308	37906309	+	In_Frame_Ins	INS	-	-	CTCCTT			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	22	37906308	37906309	-	CTCCTT	INS	CARD10	ENST00000251973	human	ensembl	74_37	-1	known	in_frame_ins	c.820_819	p.273in_frame_insKE	0.840:0.939	NULL	pfam_CARD,superfamily_DEATH-like_dom,pfscan_CARD	-	no_errors	CARD10	HGNC	ENSG00000100065	tier1			1	0	0.00	3	0	0.00	1	0	0.00	3	0	0.00
MT-RNR2	0	genome.wustl.edu	37	MT	1978	1978	+	R	SNP	A	A	G			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	MT	1978	1978	A	G	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	MT-RNR2	HGNC	ENSG00000210082	tier1	-	-	42	0	0.00	10	2	16.67	2	0	0.00	0	0	0.00
WISP2	0	genome.wustl.edu	37	20	43343871	43343880	+	R	DEL	TGTGTGTGTG	TGTGTGTGTG	-			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	TGTGTGTGTG	TGTGTGTGTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	20	43343871	43343880	TGTGTGTGTG	-	DEL	WISP2	ENST00000497421	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.044:0.049:0.052:0.062:0.059:0.007:0.005:0.003:0.005:0.006	-	-	-	no_errors	WISP2	HGNC	ENSG00000064205	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
KIF16B	0	genome.wustl.edu	37	20	16360001	16360001	+	Silent	SNP	G	G	A			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	20	16360001	16360001	G	A	SNP	KIF16B	ENST00000408042	human	ensembl	74_37	-1	known	silent	c.2646	p.V882	0.000	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF16B	HGNC	ENSG00000089177	tier1	-	-	35	0	0.00	37	4	9.76	83	0	0.00	55	3	5.08
ANXA1	0	genome.wustl.edu	37	9	75777685	75777724	+	Frame_Shift_Del	DEL	TCTTTTTTCTCAGAACTGAAGAGAGATCTGGCCAAAGACA	TCTTTTTTCTCAGAACTGAAGAGAGATCTGGCCAAAGACA	-			TCGA-VT-A80G-01A-11D-A36J-09	TCGA-VT-A80G-11A-22D-A36M-09	TCTTTTTTCTCAGAACTGAAGAGAGATCTGGCCAAAGACA	TCTTTTTTCTCAGAACTGAAGAGAGATCTGGCCAAAGACA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	76a70cc5-3cd1-4f21-b3ec-b076e3f30b74	b47de334-7363-417c-bd01-3a1542efabc1	9	75777685	75777724	TCTTTTTTCTCAGAACTGAAGAGAGATCTGGCCAAAGACA	-	DEL	ANXA1	ENST00000257497	human	ensembl	74_37	+1	known	frame_shift_del	c.489_502	p.D178fs	0.000:0.000:0.004:0.000:0.000:0.000:0.000:0.001:0.000:0.000:0.039:0.985:1.000:1.000:0.988:0.985:0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999:1.000	pfam_Annexin_repeat,smart_Annexin_repeat	pfam_Annexin_repeat,smart_Annexin_repeat,prints_Annexin,prints_AnnexinI	-	no_errors	ANXA1	HGNC	ENSG00000135046	tier1			64	0	0.00	69	2	2.82	64	0	0.00	69	2	2.82
