Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
OPHN1	0	genome.wustl.edu	37	X	67283813	67283813	+	Missense_Mutation	SNP	C	C	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	X	67283813	67283813	C	A	SNP	OPHN1	ENST00000355520	human	ensembl	74_37	-1	known	missense	c.2041	p.G681W	0.990	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	OPHN1	HGNC	ENSG00000079482	tier1	-	-	110	0	0.00	44	12	21.43	96	0	0.00	72	16	18.18
NRIP3	0	genome.wustl.edu	37	11	9007284	9007284	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	11	9007284	9007284	C	T	SNP	NRIP3	ENST00000309166	human	ensembl	74_37	-1	known	missense	c.536	p.R179H	0.998	pfam_Peptidase_aspartic_DDI1-type,superfamily_Peptidase_aspartic_dom	pfam_Peptidase_aspartic_DDI1-type,superfamily_Peptidase_aspartic_dom	-	no_errors	NRIP3	HGNC	ENSG00000175352	tier1	-	-	67	0	0.00	47	5	9.62	93	0	0.00	82	24	22.64
C7orf25	0	genome.wustl.edu	37	7	42950004	42950004	+	Missense_Mutation	SNP	T	T	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	7	42950004	42950004	T	A	SNP	C7orf25	ENST00000431882	human	ensembl	74_37	-1	known	missense	c.670	p.I224F	0.947	pfam_DUF1308	pfam_DUF1308	-	no_errors	C7orf25	HGNC	ENSG00000136197	tier1	-	-	44	0	0.00	18	9	33.33	52	0	0.00	51	15	22.73
SULT1B1	0	genome.wustl.edu	37	4	70596224	70596224	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	4	70596224	70596224	C	T	SNP	SULT1B1	ENST00000310613	human	ensembl	74_37	-1	known	missense	c.773	p.R258H	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	SULT1B1	HGNC	ENSG00000173597	tier1	rs142990488	GMAF=0.0005	47	0	0.00	6	4	40.00	156	0	0.00	100	50	33.33
COL4A6	0	genome.wustl.edu	37	X	107417804	107417804	+	Missense_Mutation	SNP	C	C	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	X	107417804	107417804	C	A	SNP	COL4A6	ENST00000372216	human	ensembl	74_37	-1	known	missense	c.3007	p.A1003S	0.010	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A6	HGNC	ENSG00000197565	tier1	-	-	148	0	0.00	30	12	28.57	48	0	0.00	45	14	23.73
GSDMC	0	genome.wustl.edu	37	8	130777930	130777930	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	8	130777930	130777930	C	T	SNP	GSDMC	ENST00000276708	human	ensembl	74_37	-1	known	missense	c.514	p.D172N	0.000	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	GSDMC	HGNC	ENSG00000147697	tier1	-	-	83	0	0.00	18	15	45.45	95	0	0.00	68	34	33.33
PPP2R2C	0	genome.wustl.edu	37	4	6374262	6374262	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	4	6374262	6374262	C	T	SNP	PPP2R2C	ENST00000335585	human	ensembl	74_37	-1	known	missense	c.613	p.D205N	1.000	superfamily_WD40_repeat_dom,pirsf_PP2A_PR55,prints_PP2A_PR55	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55,prints_PP2A_PR55	-	no_errors	PPP2R2C	HGNC	ENSG00000074211	tier1	-	-	66	0	0.00	19	12	38.71	41	0	0.00	39	5	11.36
ZNF486	0	genome.wustl.edu	37	19	20296806	20296806	+	Silent	SNP	C	C	G			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	19	20296806	20296806	C	G	SNP	ZNF486	ENST00000335117	human	ensembl	74_37	+1	known	silent	c.168	p.V56	0.087	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF486	HGNC	ENSG00000256229	tier1	-	-	93	0	0.00	36	7	16.28	12	0	0.00	16	6	27.27
GGTLC2	0	genome.wustl.edu	37	22	22989254	22989254	+	Silent	SNP	C	C	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	22	22989254	22989254	C	T	SNP	GGTLC2	ENST00000448514	human	ensembl	74_37	+1	known	silent	c.207	p.S69	0.996	pfam_GGT_peptidase,prints_GGT_peptidase	pfam_GGT_peptidase,prints_GGT_peptidase	-	no_errors	GGTLC2	HGNC	ENSG00000100121	tier1	rs138799771	-	260	1	0.38	178	26	12.68	39	0	0.00	39	10	20.41
IL27	0	genome.wustl.edu	37	16	28513296	28513296	+	Splice_Site	SNP	C	C	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	16	28513296	28513296	C	T	SNP	IL27	ENST00000356897	human	ensembl	74_37	-1	known	splice_site	c.462+1	e4+1	0.993	-	-	-	no_errors	IL27	HGNC	ENSG00000197272	tier1	-	-	64	0	0.00	31	6	16.22	48	0	0.00	34	20	37.04
TYR	0	genome.wustl.edu	37	11	88911205	88911205	+	Missense_Mutation	SNP	G	G	C			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	11	88911205	88911205	G	C	SNP	TYR	ENST00000263321	human	ensembl	74_37	+1	known	missense	c.84	p.K28N	0.999	NULL	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	TYR	HGNC	ENSG00000077498	tier1	-	-	45	0	0.00	14	6	30.00	82	0	0.00	68	27	28.42
ABLIM2	0	genome.wustl.edu	37	4	8079400	8079400	+	Silent	SNP	G	G	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	4	8079400	8079400	G	A	SNP	ABLIM2	ENST00000447017	human	ensembl	74_37	-1	known	silent	c.630	p.I210	0.957	pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM	-	no_errors	ABLIM2	HGNC	ENSG00000163995	tier1	-	-	162	0	0.00	54	9	14.29	38	0	0.00	33	5	13.16
DCAF4L2	0	genome.wustl.edu	37	8	88885852	88885852	+	Silent	SNP	C	C	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	8	88885852	88885852	C	T	SNP	DCAF4L2	ENST00000319675	human	ensembl	74_37	-1	known	silent	c.348	p.P116	0.946	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4L2	HGNC	ENSG00000176566	tier1	-	-	60	0	0.00	29	4	12.12	117	1	0.85	100	16	13.79
ARG2	0	genome.wustl.edu	37	14	68117433	68117433	+	Silent	SNP	G	G	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	14	68117433	68117433	G	A	SNP	ARG2	ENST00000261783	human	ensembl	74_37	+1	known	silent	c.861	p.G287	0.687	pfam_Ureohydrolase,prints_Ureohydrolase,tigrfam_Arginase	pfam_Ureohydrolase,prints_Ureohydrolase,tigrfam_Arginase	-	no_errors	ARG2	HGNC	ENSG00000081181	tier1	-	-	27	0	0.00	9	7	43.75	103	0	0.00	84	26	23.64
USH2A	0	genome.wustl.edu	37	1	216246595	216246595	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	1	216246595	216246595	C	T	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	missense	c.5620	p.V1874I	1.000	superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Laminin_G	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	tier1	-	-	44	0	0.00	11	4	26.67	87	0	0.00	76	29	27.62
FBN3	0	genome.wustl.edu	37	19	8193949	8193949	+	Silent	SNP	G	G	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	19	8193949	8193949	G	A	SNP	FBN3	ENST00000270509	human	ensembl	74_37	-1	known	silent	c.2259	p.P753	0.646	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449	tier1	rs60853419	GMAF=0.0005	79	0	0.00	33	20	36.36	61	1	1.61	43	20	31.25
DIP2B	0	genome.wustl.edu	37	12	51112505	51112505	+	Silent	SNP	T	T	G			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	12	51112505	51112505	T	G	SNP	DIP2B	ENST00000301180	human	ensembl	74_37	+1	known	silent	c.2865	p.A955	0.986	NULL	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2B	HGNC	ENSG00000066084	tier1	-	-	76	0	0.00	28	7	20.00	104	0	0.00	77	32	29.36
TSPAN19	0	genome.wustl.edu	37	12	85421771	85421771	+	Missense_Mutation	SNP	G	G	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	12	85421771	85421771	G	A	SNP	TSPAN19	ENST00000532498	human	ensembl	74_37	-1	known	missense	c.170	p.S57F	0.013	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN19	HGNC	ENSG00000231738	tier1	-	-	91	0	0.00	165	180	52.17	97	0	0.00	363	409	52.91
NRXN3	0	genome.wustl.edu	37	14	80328258	80328258	+	Missense_Mutation	SNP	A	A	G			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	14	80328258	80328258	A	G	SNP	NRXN3	ENST00000335750	human	ensembl	74_37	+1	known	missense	c.3137	p.K1046R	1.000	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645	tier1	rs200832810	GMAF=0	17	0	0.00	6	4	36.36	84	0	0.00	67	20	22.99
ZNF486	0	genome.wustl.edu	37	19	20296831	20296831	+	Silent	SNP	C	C	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	19	20296831	20296831	C	T	SNP	ZNF486	ENST00000335117	human	ensembl	74_37	+1	known	silent	c.193	p.L65	0.043	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF486	HGNC	ENSG00000256229	tier1	-	-	94	0	0.00	47	10	17.54	13	0	0.00	15	3	16.67
KIAA2018	0	genome.wustl.edu	37	3	113377201	113377201	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	3	113377201	113377201	C	T	SNP	KIAA2018	ENST00000316407	human	ensembl	74_37	-1	known	missense	c.3328	p.E1110K	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	KIAA2018	HGNC	ENSG00000176542	tier1	-	-	34	0	0.00	7	5	41.67	56	0	0.00	32	16	33.33
MSH3	0	genome.wustl.edu	37	5	79968152	79968152	+	Silent	SNP	A	A	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	5	79968152	79968152	A	T	SNP	MSH3	ENST00000265081	human	ensembl	74_37	+1	known	silent	c.882	p.V294	0.004	pfam_D_mismatch_repair_MutS-lik_N,superfamily_D_mismatch_repair_MutS_N	pfam_D_mismatch_repair_MutS_C,pfam_D_mismatch_repair_MutS_core,pfam_D_mmatch_repair_MutS_con_dom,pfam_D_mismatch_repair_MutS-lik_N,pfam_D_mismatch_repair_MutS_clamp,superfamily_D_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_D_mismatch_repair_MutS_N,superfamily_D_mmatch_repair_MutS_con_dom,smart_D_mismatch_repair_MutS_core,smart_D_mismatch_repair_MutS_C	-	no_errors	MSH3	HGNC	ENSG00000113318	tier1	-	-	87	0	0.00	21	10	32.26	108	0	0.00	58	32	35.56
ZNF486	0	genome.wustl.edu	37	19	20296824	20296824	+	Silent	SNP	C	C	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	19	20296824	20296824	C	T	SNP	ZNF486	ENST00000335117	human	ensembl	74_37	+1	known	silent	c.186	p.I62	0.080	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF486	HGNC	ENSG00000256229	tier1	-	-	85	0	0.00	43	9	17.31	14	0	0.00	15	6	28.57
ARFGAP2	0	genome.wustl.edu	37	11	47193866	47193866	+	Missense_Mutation	SNP	A	A	G			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	11	47193866	47193866	A	G	SNP	ARFGAP2	ENST00000524782	human	ensembl	74_37	-1	known	missense	c.638	p.I213T	1.000	NULL	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ARFGAP2	HGNC	ENSG00000149182	tier1	-	-	94	0	0.00	22	8	26.67	148	0	0.00	98	35	26.32
SMR3B	0	genome.wustl.edu	37	4	71255546	71255546	+	Missense_Mutation	SNP	C	C	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	4	71255546	71255546	C	A	SNP	SMR3B	ENST00000304915	human	ensembl	74_37	+1	known	missense	c.221	p.P74Q	0.047	NULL	NULL	-	no_errors	SMR3B	HGNC	ENSG00000171201	tier1	-	-	160	0	0.00	34	20	37.04	93	0	0.00	65	25	27.78
ZNF347	0	genome.wustl.edu	37	19	53643945	53643946	+	Frame_Shift_Ins	INS	-	-	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	19	53643945	53643946	-	T	INS	ZNF347	ENST00000452676	human	ensembl	74_37	-1	known	frame_shift_ins	c.2139_2138	p.N713fs	0.000:0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF347	HGNC	ENSG00000197937	tier1			77	0	0.00	50	5	9.09	84	0	0.00	108	13	10.74
FAM86B3P	0	genome.wustl.edu	37	8	8098246	8098246	+	R	SNP	G	G	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	8	8098246	8098246	G	T	SNP	FAM86B3P	ENST00000310542	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.016	-	-	-	no_errors	FAM86B3P	HGNC	ENSG00000173295	tier1	-	-	76	0	0.00	29	8	21.62	6	0	0.00	5	5	50.00
LOC101930284	0	genome.wustl.edu	37	1	143230391	143230391	+	R	SNP	A	A	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	1	143230391	143230391	A	T	SNP	LOC101930284	ENST00000422716	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.080	-	-	-	no_errors	RP11-782C8.5	Clone_based_vega_gene	ENSG00000225278	tier1	-	-	35	0	0.00	10	2	16.67	66	1	1.49	70	5	6.67
DTX3	0	genome.wustl.edu	37	12	58002927	58002937	+	In_Frame_Del	DEL	GATGACTGAAG	GATGACTGAAG	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	GATGACTGAAG	GATGACTGAAG	GATGACTGAAG	-	GATGACTGAAG	GATGACTGAAG	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	12	58002927	58002937	GATGACTGAAG	-	DEL	DTX3	ENST00000551632	human	ensembl	74_37	+1	known	in_frame_del	c.1045_1053	p.DD*349in_frame_del	0.987:0.979:0.973:1.000:1.000:1.000:1.000:1.000:0.982	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	DTX3	HGNC	ENSG00000178498	tier1			81	0	0.00	1036	30	2.81	81	0	0.00	1036	30	2.81
CDH18	0	genome.wustl.edu	37	5	19473754	19473754	+	Missense_Mutation	SNP	G	G	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	5	19473754	19473754	G	A	SNP	CDH18	ENST00000274170	human	ensembl	74_37	-1	known	missense	c.1954	p.R652W	0.827	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH18	HGNC	ENSG00000145526	tier1	-	-	69	0	0.00	20	9	31.03	105	2	1.87	73	18	19.78
ELANE	0	genome.wustl.edu	37	19	855742	855742	+	Frame_Shift_Del	DEL	G	G	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	19	855742	855742	G	-	DEL	ELANE	ENST00000263621	human	ensembl	74_37	+1	known	frame_shift_del	c.545	p.R182fs	0.109	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	ELANE	HGNC	ENSG00000197561	tier1			64	0	0.00	19	2	9.52	9	0	0.00	6	0	0.00
PAK4	0	genome.wustl.edu	37	19	39663769	39663769	+	Missense_Mutation	SNP	C	C	T			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	19	39663769	39663769	C	T	SNP	PAK4	ENST00000358301	human	ensembl	74_37	+1	known	missense	c.416	p.A139V	0.004	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_CRIB_dom,superfamily_Kinase-like_dom,smart_CRIB_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRIB_dom,pfscan_Prot_kinase_dom	-	no_errors	PAK4	HGNC	ENSG00000130669	tier1	-	-	42	0	0.00	10	3	23.08	8	0	0.00	4	0	0.00
PCDHA5	0	genome.wustl.edu	37	5	140202596	140202596	+	Silent	SNP	G	G	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	5	140202596	140202596	G	A	SNP	PCDHA5	ENST00000529859	human	ensembl	74_37	+1	known	silent	c.1236	p.L412	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA5	HGNC	ENSG00000204965	tier1	-	-	165	1	0.60	33	18	35.29	5	0	0.00	5	1	16.67
TERF1	0	genome.wustl.edu	37	8	73921284	73921286	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	8	73921284	73921286	GAG	-	DEL	TERF1	ENST00000276603	human	ensembl	74_37	+1	known	in_frame_del	c.163_165	p.E58in_frame_del	0.121:0.130:0.144	pirsf_Telomere_repeat-bd-1/2	pfam_Telomere_rpt-bd_fac_dimer_dom,pfam_SANT/Myb,superfamily_Telomere_rpt-bd_fac_dimer_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pirsf_Telomere_repeat-bd-1/2,pfscan_Myb-like_dom	-	no_errors	TERF1	HGNC	ENSG00000147601	tier1			46	0	0.00	16	2	11.11	5	0	0.00	7	0	0.00
ENSG00000203849	0	genome.wustl.edu	37	1	142716762	142716762	+	R	SNP	C	C	A			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	1	142716762	142716762	C	A	SNP	ENSG00000203849	ENST00000595144	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	RP11-417J8.6	Clone_based_vega_gene	ENSG00000203849	tier1	-	-	67	0	0.00	20	9	31.03	0	0	0.00	0	0	0.00
ENSG00000221156	0	genome.wustl.edu	37	7	35882541	35882542	+	R	DEL	TA	TA	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	7	35882541	35882542	TA	-	DEL	ENSG00000221156	ENST00000408229	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	AC007551.1	Clone_based_ensembl_gene	ENSG00000221156	tier1			43	0	0.00	12	2	14.29	0	0	0.00	0	0	0.00
HMGB3	0	genome.wustl.edu	37	X	150156358	150156360	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	X	150156358	150156360	GAG	-	DEL	HMGB3	ENST00000325307	human	ensembl	74_37	+1	known	in_frame_del	c.574_576	p.E195in_frame_del	0.987:0.994:0.985	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	HMGB3	HGNC	ENSG00000029993	tier1			46	0	0.00	12	2	14.29	0	0	0.00	1	0	0.00
KMT2D	0	genome.wustl.edu	37	12	49426727	49426727	+	Frame_Shift_Del	DEL	G	G	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	12	49426727	49426727	G	-	DEL	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	frame_shift_del	c.11761	p.Q3921fs	0.012	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548	tier1			57	0	0.00	23	8	25.81	3	0	0.00	2	0	0.00
GP6	0	genome.wustl.edu	37	19	55526104	55526107	+	Frame_Shift_Del	DEL	CAGA	CAGA	-			TCGA-WK-A8XO-01A-11D-A37C-09	TCGA-WK-A8XO-10A-01D-A37F-09	CAGA	CAGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	66179bb1-3f19-4b27-aaba-d59e3bbac62c	234d02ef-7286-46bc-b74a-744de27b69d8	19	55526104	55526107	CAGA	-	DEL	GP6	ENST00000310373	human	ensembl	74_37	-1	known	frame_shift_del	c.1209_1206	p.P404fs	0.009:0.011:0.014:0.015	NULL	smart_Ig_sub,smart_Ig_sub2	-	no_errors	GP6	HGNC	ENSG00000088053	tier1			42	0	0.00	18	3	14.29	56	0	0.00	107	2	1.83
