Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
RARB	0	genome.wustl.edu	37	3	25622051	25622051	+	Missense_Mutation	SNP	C	C	A			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	3	25622051	25622051	C	A	SNP	RARB	ENST00000404969	human	ensembl	74_37	+1	known	missense	c.645	p.D215E	0.997	superfamily_Nucl_hormone_rcpt_ligand-bd,prints_Retinoic_acid_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Nuc_orph_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	RARB	HGNC	ENSG00000077092	tier1	-	-	56	0	0.00	15	20	57.14	70	1	1.39	43	38	46.91
ENSG00000204398	0	genome.wustl.edu	37	13	112240744	112240744	+	R	SNP	C	C	T			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	13	112240744	112240744	C	T	SNP	ENSG00000204398	ENST00000607406	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-65D24.2	Clone_based_vega_gene	ENSG00000204398	tier1	-	-	39	0	0.00	23	12	34.29	56	0	0.00	27	23	46.00
KCNMB3	0	genome.wustl.edu	37	3	178968712	178968712	+	Missense_Mutation	SNP	G	G	A			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	3	178968712	178968712	G	A	SNP	KCNMB3	ENST00000314235	human	ensembl	74_37	-1	known	missense	c.79	p.P27S	0.002	NULL	pfam_K_chnl_Ca-activ_BK_bsu	-	no_errors	KCNMB3	HGNC	ENSG00000171121	tier1	-	-	45	0	0.00	24	23	48.94	78	0	0.00	36	35	49.30
C6orf165	0	genome.wustl.edu	37	6	88119637	88119637	+	Missense_Mutation	SNP	T	T	C			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	6	88119637	88119637	T	C	SNP	C6orf165	ENST00000369562	human	ensembl	74_37	+1	known	missense	c.80	p.I27T	0.100	NULL	pfam_DUF3508	-	no_errors	C6ORF165	Uniprot_gn	ENSG00000272514	tier1	-	-	210	0	0.00	62	63	50.40	133	0	0.00	72	57	44.19
SVILP1	0	genome.wustl.edu	37	10	30987307	30987307	+	R	SNP	G	G	T			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	10	30987307	30987307	G	T	SNP	SVILP1	ENST00000435645	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	SVILP1	HGNC	ENSG00000234814	tier1	-	-	84	0	0.00	48	30	38.46	81	0	0.00	63	40	38.83
TSC22D2	0	genome.wustl.edu	37	3	150128722	150128722	+	Missense_Mutation	SNP	C	C	T			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	3	150128722	150128722	C	T	SNP	TSC22D2	ENST00000361875	human	ensembl	74_37	+1	known	missense	c.1585	p.P529S	1.000	NULL	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D2	HGNC	ENSG00000196428	tier1	-	-	58	0	0.00	20	18	47.37	48	0	0.00	27	17	38.64
STK36	0	genome.wustl.edu	37	2	219563973	219563973	+	Missense_Mutation	SNP	C	C	T			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	2	219563973	219563973	C	T	SNP	STK36	ENST00000295709	human	ensembl	74_37	+1	known	missense	c.3706	p.R1236W	0.994	superfamily_ARM-type_fold	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STK36	HGNC	ENSG00000163482	tier1	-	-	42	0	0.00	9	10	52.63	81	0	0.00	46	29	38.67
LINC00933	0	genome.wustl.edu	37	15	85121416	85121416	+	R	SNP	A	A	T			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	15	85121416	85121416	A	T	SNP	LINC00933	ENST00000557887	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.235	-	-	-	no_errors	LINC00933	HGNC	ENSG00000259728	tier1	-	-	19	0	0.00	6	3	33.33	46	0	0.00	26	3	10.34
TENM3	0	genome.wustl.edu	37	4	183650181	183650181	+	Missense_Mutation	SNP	A	A	C			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	4	183650181	183650181	A	C	SNP	TENM3	ENST00000406950	human	ensembl	74_37	+1	known	missense	c.2432	p.Y811S	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c-like_dom,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM3	HGNC	ENSG00000218336	tier1	-	-	72	0	0.00	24	29	54.72	97	0	0.00	64	43	40.19
SYT6	0	genome.wustl.edu	37	1	114646326	114646326	+	Silent	SNP	T	T	C			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	1	114646326	114646326	T	C	SNP	SYT6	ENST00000393296	human	ensembl	74_37	-1	known	silent	c.1089	p.G363	0.716	superfamily_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,prints_Synaptotagmin,prints_C2_dom,pfscan_C2_dom	-	no_errors	SYT6	HGNC	ENSG00000134207	tier1	-	-	48	0	0.00	22	11	33.33	75	0	0.00	41	26	38.81
MIR202	0	genome.wustl.edu	37	10	135061186	135061186	+	R	SNP	G	G	A			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	10	135061186	135061186	G	A	SNP	MIR202	ENST00000300167	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.018	-	-	-	no_errors	MIR202	HGNC	ENSG00000166917	tier1	-	-	92	0	0.00	42	32	43.24	63	0	0.00	11	22	66.67
RBP3	0	genome.wustl.edu	37	10	48389030	48389030	+	Silent	SNP	G	G	A			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	10	48389030	48389030	G	A	SNP	RBP3	ENST00000224600	human	ensembl	74_37	-1	known	silent	c.1848	p.I616	0.981	pfam_Interphotoreceptor_retinol-bd,smart_Interphotoreceptor_retinol-bd	pfam_Interphotoreceptor_retinol-bd,pfam_Interphotorcpt_retinol-bd_N,smart_Interphotoreceptor_retinol-bd	-	no_errors	RBP3	HGNC	ENSG00000107618	tier1	-	-	75	0	0.00	32	4	11.11	38	0	0.00	25	5	16.67
C4orf40	0	genome.wustl.edu	37	4	71024318	71024318	+	Missense_Mutation	SNP	T	T	A			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	4	71024318	71024318	T	A	SNP	C4orf40	ENST00000344526	human	ensembl	74_37	+1	known	missense	c.349	p.F117I	0.000	NULL	NULL	-	no_errors	C4orf40	HGNC	ENSG00000187533	tier1	-	-	56	0	0.00	25	17	40.48	95	0	0.00	39	40	50.63
AHK	0	genome.wustl.edu	37	11	62286210	62286210	+	Missense_Mutation	SNP	G	G	A			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	11	62286210	62286210	G	A	SNP	AHK	ENST00000378024	human	ensembl	74_37	-1	known	missense	c.15679	p.P5227S	1.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHK	HGNC	ENSG00000124942	tier1	-	-	43	0	0.00	17	17	50.00	117	0	0.00	54	52	49.06
FRMD1	0	genome.wustl.edu	37	6	168464403	168464403	+	Missense_Mutation	SNP	G	G	A			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	6	168464403	168464403	G	A	SNP	FRMD1	ENST00000283309	human	ensembl	74_37	-1	known	missense	c.682	p.R228W	0.938	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	-	no_errors	FRMD1	HGNC	ENSG00000153303	tier1	-	-	30	0	0.00	21	16	43.24	59	0	0.00	48	31	39.24
TEX10	0	genome.wustl.edu	37	9	103109310	103109310	+	Missense_Mutation	SNP	C	C	A			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	9	103109310	103109310	C	A	SNP	TEX10	ENST00000374902	human	ensembl	74_37	-1	known	missense	c.559	p.V187L	1.000	pfam_IPI1/TEX10,superfamily_ARM-type_fold	pfam_IPI1/TEX10,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	TEX10	HGNC	ENSG00000136891	tier1	-	-	30	0	0.00	11	16	59.26	86	0	0.00	40	41	50.62
FUZ	0	genome.wustl.edu	37	19	50315965	50315965	+	Missense_Mutation	SNP	T	T	C			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	19	50315965	50315965	T	C	SNP	FUZ	ENST00000313777	human	ensembl	74_37	-1	known	missense	c.140	p.N47S	1.000	NULL	NULL	-	no_errors	FUZ	HGNC	ENSG00000010361	tier1	-	-	51	0	0.00	24	21	46.67	99	0	0.00	46	32	41.03
TLN2	0	genome.wustl.edu	37	15	63055879	63055879	+	Silent	SNP	C	C	T			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	15	63055879	63055879	C	T	SNP	TLN2	ENST00000306829	human	ensembl	74_37	+1	known	silent	c.5079	p.D1693	0.962	superfamily_Vinculin/catenin	pfam_Talin_cent,pfam_ILWEQ_dom,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ_dom,pfscan_FERM_domain,pfscan_ILWEQ_dom	-	no_errors	TLN2	HGNC	ENSG00000171914	tier1	-	-	33	0	0.00	12	23	65.71	89	1	1.11	43	54	55.67
MOSPD1	0	genome.wustl.edu	37	X	134033514	134033514	+	R	SNP	A	A	C			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	X	134033514	134033514	A	C	SNP	MOSPD1	ENST00000462060	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.873	-	-	-	no_errors	MOSPD1	HGNC	ENSG00000101928	tier1	-	-	65	0	0.00	23	29	55.77	100	0	0.00	58	53	47.75
LOC643201	0	genome.wustl.edu	37	5	175583878	175583878	+	R	SNP	G	G	T			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	5	175583878	175583878	G	T	SNP	LOC643201	ENST00000515403	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.940	-	-	-	no_errors	RP11-844P9.2	Clone_based_vega_gene	ENSG00000248596	tier1	-	-	48	0	0.00	37	4	9.76	128	0	0.00	118	23	16.20
SLC7A9	0	genome.wustl.edu	37	19	33349358	33349358	+	Missense_Mutation	SNP	A	A	C			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	19	33349358	33349358	A	C	SNP	SLC7A9	ENST00000023064	human	ensembl	74_37	-1	known	missense	c.965	p.F322C	1.000	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A9	HGNC	ENSG00000021488	tier1	-	-	37	0	0.00	17	8	32.00	82	0	0.00	46	23	33.33
MLF1IP	0	genome.wustl.edu	37	4	185652114	185652114	+	Missense_Mutation	SNP	C	C	T			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	4	185652114	185652114	C	T	SNP	MLF1IP	ENST00000281453	human	ensembl	74_37	-1	known	missense	c.56	p.R19H	0.000	NULL	NULL	-	no_errors	MLF1IP	HGNC	ENSG00000151725	tier1	-	-	86	0	0.00	35	8	18.60	104	0	0.00	89	17	16.04
PPP2R2A	0	genome.wustl.edu	37	8	26218555	26218555	+	Silent	SNP	T	T	G			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	8	26218555	26218555	T	G	SNP	PPP2R2A	ENST00000380737	human	ensembl	74_37	+1	known	silent	c.525	p.A175	0.997	superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55,prints_PP2A_PR55	-	no_errors	PPP2R2A	HGNC	ENSG00000221914	tier1	-	-	82	0	0.00	40	27	40.30	102	0	0.00	52	46	46.94
OR1S1	0	genome.wustl.edu	37	11	57982690	57982690	+	Silent	SNP	A	A	T			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	11	57982690	57982690	A	T	SNP	OR1S1	ENST00000309433	human	ensembl	74_37	+1	known	silent	c.474	p.T158	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1S1	HGNC	ENSG00000172774	tier1	-	-	43	0	0.00	10	27	72.97	108	0	0.00	49	44	47.31
ETAA1	0	genome.wustl.edu	37	2	67631536	67631539	+	Frame_Shift_Del	DEL	TTCT	TTCT	-			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	TTCT	TTCT	TTCT	-	TTCT	TTCT	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	2	67631536	67631539	TTCT	-	DEL	ETAA1	ENST00000272342	human	ensembl	74_37	+1	known	frame_shift_del	c.1722_1725	p.F576fs	0.011:0.116:0.932:0.987	NULL	NULL	-	no_errors	ETAA1	HGNC	ENSG00000143971	tier1			20	0	0.00	16	5	23.81	145	0	0.00	79	56	41.48
HYLS1	0	genome.wustl.edu	37	11	125770156	125770158	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	CTT	CTT	CTT	-	CTT	CTT	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	11	125770156	125770158	CTT	-	DEL	HYLS1	ENST00000356438	human	ensembl	74_37	+1	known	in_frame_del	c.893_895	p.S299in_frame_del	1.000:1.000:1.000	NULL	NULL	-	no_errors	HYLS1	HGNC	ENSG00000198331	tier1			52	0	0.00	18	20	52.63	95	0	0.00	67	58	46.40
TRIM52	0	genome.wustl.edu	37	5	180687743	180687746	+	Frame_Shift_Del	DEL	CAAG	CAAG	-			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	CAAG	CAAG	CAAG	-	CAAG	CAAG	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	5	180687743	180687746	CAAG	-	DEL	TRIM52	ENST00000327767	human	ensembl	74_37	-1	known	frame_shift_del	c.72_69	p.C23fs	1.000:1.000:1.000:1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM52	HGNC	ENSG00000183718	tier1			40	0	0.00	19	14	42.42	104	0	0.00	48	33	40.74
NPDC1	0	genome.wustl.edu	37	9	139935530	139935531	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	CT	CT	CT	-	CT	CT	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	9	139935530	139935531	CT	-	DEL	NPDC1	ENST00000371600	human	ensembl	74_37	-1	known	frame_shift_del	c.603_602	p.Q201fs	0.001:0.001	pfam_NPDC1	pfam_NPDC1	-	no_errors	NPDC1	HGNC	ENSG00000107281	tier1			84	0	0.00	34	27	44.26	49	0	0.00	16	11	40.74
RSL1D1	0	genome.wustl.edu	37	16	11941583	11941584	+	Frame_Shift_Del	DEL	TT	TT	-			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	TT	TT	TT	-	TT	TT	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	16	11941583	11941584	TT	-	DEL	RSL1D1	ENST00000571133	human	ensembl	74_37	-1	known	frame_shift_del	c.326_325	p.K109fs	0.995:0.892	pfam_Ribosomal_L1/biogenesis,superfamily_Ribosomal_L1-like	pfam_Ribosomal_L1/biogenesis,superfamily_Ribosomal_L1-like	-	no_errors	RSL1D1	HGNC	ENSG00000171490	tier1			68	0	0.00	31	29	48.33	130	0	0.00	60	104	63.41
PRKAR2B	0	genome.wustl.edu	37	7	106786808	106786809	+	Frame_Shift_Del	DEL	TA	TA	-			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	TA	TA	TA	-	TA	TA	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	7	106786808	106786809	TA	-	DEL	PRKAR2B	ENST00000265717	human	ensembl	74_37	+1	known	frame_shift_del	c.643_644	p.Y215fs	1.000:1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom	pfam_cNMP-bd_dom,pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cNMP-bd-like,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom,prints_cAMP/cGMP_kin	-	no_errors	PRKAR2B	HGNC	ENSG00000005249	tier1			84	0	0.00	37	24	39.34	175	0	0.00	95	49	34.03
IRF3	0	genome.wustl.edu	37	19	50165229	50165230	+	Frame_Shift_Del	DEL	AC	AC	-			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	AC	AC	AC	-	AC	AC	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	19	50165229	50165230	AC	-	DEL	IRF3	ENST00000309877	human	ensembl	74_37	-1	known	frame_shift_del	c.958_957	p.F320fs	0.004:0.003	pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_D-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_D-bd_dom,prints_Interferon_reg_fact_D-bd_dom	-	no_errors	IRF3	HGNC	ENSG00000126456	tier1			67	0	0.00	28	21	42.86	118	0	0.00	44	23	34.33
ATRX	0	genome.wustl.edu	37	X	76939473	76939474	+	Frame_Shift_Del	DEL	TT	TT	-			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	TT	TT	TT	-	TT	TT	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	X	76939473	76939474	TT	-	DEL	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	frame_shift_del	c.1275_1274	p.K425fs	0.312:0.307	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	tier1			53	0	0.00	3	15	83.33	150	0	0.00	27	66	70.97
UGGT1	0	genome.wustl.edu	37	2	128900693	128900694	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	AA	AA	AA	-	AA	AA	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	2	128900693	128900694	AA	-	DEL	UGGT1	ENST00000259253	human	ensembl	74_37	+1	known	frame_shift_del	c.1745_1746	p.K583fs	0.996:0.531	NULL	pfam_UDP-g_GGtrans	-	no_errors	UGGT1	HGNC	ENSG00000136731	tier1			99	0	0.00	25	19	43.18	114	0	0.00	86	64	42.67
AFM	0	genome.wustl.edu	37	4	74347514	74347514	+	Frame_Shift_Del	DEL	G	G	-			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	4	74347514	74347514	G	-	DEL	AFM	ENST00000226355	human	ensembl	74_37	+1	known	frame_shift_del	c.22	p.G8fs	0.856	pirsf_Serum_albumin/AFP	pirsf_Serum_albumin/AFP,pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,prints_ALB/AFP/VDB,prints_Alpha-fetoprotein	-	no_errors	AFM	HGNC	ENSG00000079557	tier1			99	0	0.00	35	16	31.37	82	0	0.00	44	34	43.59
TADA3	0	genome.wustl.edu	37	3	9827049	9827050	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	CT	CT	CT	-	CT	CT	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	3	9827049	9827050	CT	-	DEL	TADA3	ENST00000301964	human	ensembl	74_37	-1	known	frame_shift_del	c.871_870	p.A292fs	0.617:0.028	NULL	pfam_Histone_AcTrfase_su3	-	no_errors	TADA3	HGNC	ENSG00000171148	tier1			85	0	0.00	24	12	33.33	111	0	0.00	61	44	41.90
MICALL1	0	genome.wustl.edu	37	22	38323604	38323605	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	CT	CT	CT	-	CT	CT	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	22	38323604	38323605	CT	-	DEL	MICALL1	ENST00000215957	human	ensembl	74_37	+1	known	frame_shift_del	c.1652_1653	p.P551fs	0.572:0.475	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM	-	no_errors	MICALL1	HGNC	ENSG00000100139	tier1			129	0	0.00	8	52	86.67	107	0	0.00	10	46	82.14
TOPAZ1	0	genome.wustl.edu	37	3	44346765	44346766	+	Frame_Shift_Del	DEL	TA	TA	-			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	TA	TA	TA	-	TA	TA	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	3	44346765	44346766	TA	-	DEL	TOPAZ1	ENST00000309765	human	ensembl	74_37	+1	known	frame_shift_del	c.3991_3992	p.Y1331fs	0.462:0.000	NULL	NULL	-	no_errors	TOPAZ1	HGNC	ENSG00000173769	tier1			60	0	0.00	27	12	30.77	149	0	0.00	89	74	45.40
MGME1	0	genome.wustl.edu	37	20	17956397	17956398	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	AG	AG	AG	-	AG	AG	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	20	17956397	17956398	AG	-	DEL	MGME1	ENST00000377710	human	ensembl	74_37	+1	known	frame_shift_del	c.582_583	p.D197fs	0.395:0.212	NULL	superfamily_Restrct_endonuc-II-like	-	no_errors	MGME1	HGNC	ENSG00000125871	tier1			53	0	0.00	36	17	32.08	146	0	0.00	68	56	45.16
ATMIN	0	genome.wustl.edu	37	16	81077734	81077735	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	AT	AT	AT	-	AT	AT	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	16	81077734	81077735	AT	-	DEL	ATMIN	ENST00000299575	human	ensembl	74_37	+1	known	frame_shift_del	c.1631_1632	p.H544fs	0.052:0.000	NULL	smart_Znf_C2H2-like	-	no_errors	ATMIN	HGNC	ENSG00000166454	tier1			50	0	0.00	20	9	31.03	15	0	0.00	3	10	76.92
COQ9	0	genome.wustl.edu	37	16	57493517	57493519	+	In_Frame_Del	DEL	ACA	ACA	-			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	ACA	ACA	ACA	-	ACA	ACA	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	16	57493517	57493519	ACA	-	DEL	COQ9	ENST00000262507	human	ensembl	74_37	+1	known	in_frame_del	c.752_754	p.N252in_frame_del	1.000:1.000:1.000	pfam_COQ9,tigrfam_Ubiq_biosynth_COQ9	pfam_COQ9,superfamily_Homeodomain-like,tigrfam_Ubiq_biosynth_COQ9	-	no_errors	COQ9	HGNC	ENSG00000088682	tier1			36	0	0.00	5	18	78.26	69	0	0.00	7	22	75.86
LETM1	0	genome.wustl.edu	37	4	1824837	1824837	+	Missense_Mutation	SNP	C	C	T			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	4	1824837	1824837	C	T	SNP	LETM1	ENST00000302787	human	ensembl	74_37	-1	known	missense	c.1354	p.V452M	0.993	NULL	pfam_LETM1,pfscan_EF_hand_dom	-	no_errors	LETM1	HGNC	ENSG00000168924	tier1	-	-	65	0	0.00	6	10	62.50	49	0	0.00	2	15	88.24
MTFR1	0	genome.wustl.edu	37	8	66620234	66620237	+	Frame_Shift_Del	DEL	AGAG	AGAG	-			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	AGAG	AGAG	AGAG	-	AGAG	AGAG	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	8	66620234	66620237	AGAG	-	DEL	MTFR1	ENST00000262146	human	ensembl	74_37	+1	known	frame_shift_del	c.921_924	p.R309fs	0.994:0.993:0.944:0.308	NULL	pfam_Mtfr1	-	no_errors	MTFR1	HGNC	ENSG00000066855	tier1			58	0	0.00	8	19	70.37	98	0	0.00	9	27	75.00
PLXNB2	0	genome.wustl.edu	37	22	50718148	50718148	+	Missense_Mutation	SNP	T	T	C			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	22	50718148	50718148	T	C	SNP	PLXNB2	ENST00000359337	human	ensembl	74_37	-1	known	missense	c.4300	p.K1434E	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB2	HGNC	ENSG00000196576	tier1	-	-	90	0	0.00	4	26	86.67	119	0	0.00	7	57	89.06
SETD1A	0	genome.wustl.edu	37	16	30992058	30992059	+	Splice_Site	DEL	AG	AG	-			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	AG	AG	AG	-	AG	AG	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	16	30992058	30992059	AG	-	DEL	SETD1A	ENST00000262519	human	ensembl	74_37	+1	known	splice_site_del	c.4582-2_4582-1	e15-1	1.000:1.000	-	-	-	no_errors	SETD1A	HGNC	ENSG00000099381	tier1			68	0	0.00	33	31	48.44	19	0	0.00	9	8	47.06
TONSL	0	genome.wustl.edu	37	8	145660403	145660403	+	Silent	SNP	G	G	A			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	8	145660403	145660403	G	A	SNP	TONSL	ENST00000409379	human	ensembl	74_37	-1	known	silent	c.3003	p.D1001	0.999	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TONSL	HGNC	ENSG00000160949	tier1	-	-	95	0	0.00	4	27	87.10	15	0	0.00	1	6	85.71
TP53	0	genome.wustl.edu	37	17	7579346	7579348	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	AAG	AAG	AAG	-	AAG	AAG	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	17	7579346	7579348	AAG	-	DEL	TP53	ENST00000269305	human	ensembl	74_37	-1	known	in_frame_del	c.341_339	p.F113in_frame_del	0.998:1.000:1.000	pfam_p53_D-bd,superfamily_p53-like_TF_D-bd	pfam_p53_D-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_D-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1			124	0	0.00	4	30	88.24	146	0	0.00	7	41	85.42
ZNF469	0	genome.wustl.edu	37	16	88504643	88504643	+	Frame_Shift_Del	DEL	C	C	-			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	16	88504643	88504643	C	-	DEL	ZNF469	ENST00000437464	human	ensembl	74_37	+1	known	frame_shift_del	c.10681	p.P3561fs	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF469	HGNC	ENSG00000225614	tier1			57	0	0.00	19	28	59.57	15	0	0.00	7	5	41.67
ORM1	0	genome.wustl.edu	37	9	117087474	117087474	+	R	SNP	C	C	G			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	9	117087474	117087474	C	G	SNP	ORM1	ENST00000477456	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ORM1	HGNC	ENSG00000229314	tier1	-	-	108	0	0.00	87	13	13.00	406	1	0.25	464	28	5.68
ARHGAP31	0	genome.wustl.edu	37	3	119133104	119133134	+	Frame_Shift_Del	DEL	TCTGTCTCCTCCACTCCCACCTGCTCCTCCC	TCTGTCTCCTCCACTCCCACCTGCTCCTCCC	-			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	TCTGTCTCCTCCACTCCCACCTGCTCCTCCC	TCTGTCTCCTCCACTCCCACCTGCTCCTCCC	TCTGTCTCCTCCACTCCCACCTGCTCCTCCC	-	TCTGTCTCCTCCACTCCCACCTGCTCCTCCC	TCTGTCTCCTCCACTCCCACCTGCTCCTCCC	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	3	119133104	119133134	TCTGTCTCCTCCACTCCCACCTGCTCCTCCC	-	DEL	ARHGAP31	ENST00000264245	human	ensembl	74_37	+1	known	frame_shift_del	c.2328_2358	p.S778fs	0.057:0.059:0.035:0.024:0.028:0.051:0.004:0.013:0.021:0.004:0.002:0.000:0.000:0.004:0.007:0.006:0.007:0.007:0.006:0.919:0.985:0.990:1.000:1.000:0.998:0.987:1.000:0.998:1.000:1.000:0.990	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081	tier1			117	0	0.00	73	4	5.19	117	0	0.00	73	4	5.19
MALAT1	0	genome.wustl.edu	37	11	65268614	65268614	+	R	SNP	C	C	T			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	11	65268614	65268614	C	T	SNP	MALAT1	ENST00000534336	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562	tier1	-	-	43	0	0.00	23	21	47.73	146	2	1.35	66	71	51.82
AMY1C	0	genome.wustl.edu	37	1	104297408	104297408	+	Missense_Mutation	SNP	G	G	A			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	1	104297408	104297408	G	A	SNP	AMY1C	ENST00000370079	human	ensembl	74_37	+1	known	missense	c.1073	p.R358H	0.998	superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,pfam_A-amylase_b_C,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,smart_A-amylase_b_C,prints_Alpha_amylase	-	no_errors	AMY1C	HGNC	ENSG00000187733	tier1	-	-	19	0	0.00	1	10	90.91	9	0	0.00	0	1	100.00
ENSG00000256982	0	genome.wustl.edu	37	16	89119157	89119157	+	R	DEL	T	T	-			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	16	89119157	89119157	T	-	DEL	ENSG00000256982	ENST00000537498	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	CTD-2555A7.2	Clone_based_vega_gene	ENSG00000256982	tier1			26	0	0.00	15	3	16.67	5	0	0.00	3	1	25.00
NSUN5	0	genome.wustl.edu	37	7	72717970	72717973	+	Frame_Shift_Del	DEL	GCAT	GCAT	-			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	GCAT	GCAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	7	72717970	72717973	GCAT	-	DEL	NSUN5	ENST00000438747	human	ensembl	74_37	-1	known	frame_shift_del	c.998_995	p.H332fs	0.962:0.948:0.057:0.066	pfam_Fmu/NOL1/Nop2p	pfam_Fmu/NOL1/Nop2p,prints_RCMT	-	no_errors	NSUN5	HGNC	ENSG00000130305	tier1			85	0	0.00	34	27	44.26	12	0	0.00	3	1	25.00
CNTP3B	0	genome.wustl.edu	37	9	43915500	43915500	+	Missense_Mutation	SNP	G	G	C			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	9	43915500	43915500	G	C	SNP	CNTP3B	ENST00000377564	human	ensembl	74_37	+1	known	missense	c.3583	p.G1195R	0.363	pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTP3B	HGNC	ENSG00000154529	tier1	-	-	14	0	0.00	9	4	30.77	0	0	0.00	0	0	0.00
ENSG00000244306	0	genome.wustl.edu	37	14	19855845	19855845	+	R	SNP	C	C	T			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	14	19855845	19855845	C	T	SNP	ENSG00000244306	ENST00000551334	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	CTD-2314B22.3	Clone_based_vega_gene	ENSG00000244306	tier1	-	-	9	0	0.00	7	4	36.36	0	0	0.00	1	0	0.00
ENSG00000263378	0	genome.wustl.edu	37	6	73972779	73972793	+	R	DEL	GCGGCGGCGGCGGCA	GCGGCGGCGGCGGCA	-			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	GCGGCGGCGGCGGCA	GCGGCGGCGGCGGCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	6	73972779	73972793	GCGGCGGCGGCGGCA	-	DEL	ENSG00000263378	ENST00000584443	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.010:0.008:0.003:0.004:0.002:0.001:0.002:0.003:0.003:0.012:0.028:0.028:0.029:0.029:0.028	-	-	-	no_errors	AC019205.1	Clone_based_ensembl_gene	ENSG00000263378	tier1			0	0	0.00	0	1	100.00	0	0	0.00	0	1	100.00
FGF9	0	genome.wustl.edu	37	13	22275848	22275849	+	R	INS	-	-	TGTGTG			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	13	22275848	22275849	-	TGTGTG	INS	FGF9	ENST00000478546	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004:0.000	-	-	-	no_errors	FGF9	HGNC	ENSG00000102678	tier1			0	0	0.00	1	0	0.00	0	0	0.00	1	0	0.00
KRTAP10-9	0	genome.wustl.edu	37	21	46048196	46048197	+	R	INS	-	-	CGCTGGT			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	21	46048196	46048197	-	CGCTGGT	INS	KRTAP10-9	ENST00000484861	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.001	-	-	-	no_errors	KRTAP10-9	HGNC	ENSG00000221837	tier1			0	0	0.00	1	0	0.00	0	0	0.00	1	0	0.00
SHOX2	0	genome.wustl.edu	37	3	157816014	157816014	+	Silent	SNP	C	C	T			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	3	157816014	157816014	C	T	SNP	SHOX2	ENST00000389589	human	ensembl	74_37	-1	known	silent	c.870	p.P290	1.000	NULL	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_OAR_dom,pfscan_Homeobox_dom,prints_HTH_motif	-	no_errors	SHOX2	HGNC	ENSG00000168779	tier1	-	-	37	0	0.00	37	4	9.76	3	0	0.00	6	0	0.00
TULP4	0	genome.wustl.edu	37	6	158923753	158923753	+	Frame_Shift_Del	DEL	G	G	-			TCGA-X2-A95T-01A-11D-A37C-09	TCGA-X2-A95T-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	eae14da4-7965-48f3-919d-f1a4d02028a4	9de98674-1ec6-4f41-99e7-4628c6bd23f5	6	158923753	158923753	G	-	DEL	TULP4	ENST00000367097	human	ensembl	74_37	+1	known	frame_shift_del	c.3058	p.V1022fs	0.001	NULL	pfam_Tubby_C,pfam_SOCS_C,pfam_WD40_repeat,superfamily_Tubby_C-like,superfamily_WD40_repeat_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TULP4	HGNC	ENSG00000130338	tier1			35	0	0.00	16	2	11.11	0	0	0.00	4	0	0.00
