Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
ZNF503	0	genome.wustl.edu	37	10	77158854	77158854	+	Missense_Mutation	SNP	A	A	T			TCGA-Z4-AAPF-01A-11D-A38Z-09	TCGA-Z4-AAPF-10A-01D-A38Z-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18bdc8dd-e197-4e9f-8b9d-2f340e191aa7	0a413fb9-5f33-44d6-a538-78b9fd54dd0e	10	77158854	77158854	A	T	SNP	ZNF503	ENST00000372524	human	ensembl	74_37	-1	known	missense	c.1594	p.S532T	1.000	pfscan_Znf_C2H2	pfam_Tscrpt_rep_NocA-like,pfscan_Znf_C2H2	-	no_errors	ZNF503	HGNC	ENSG00000165655	tier1	-	-	12	0	0.00	12	9	42.86	24	0	0.00	31	8	20.51
TXK	0	genome.wustl.edu	37	4	48097218	48097218	+	Missense_Mutation	SNP	C	C	A			TCGA-Z4-AAPF-01A-11D-A38Z-09	TCGA-Z4-AAPF-10A-01D-A38Z-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18bdc8dd-e197-4e9f-8b9d-2f340e191aa7	0a413fb9-5f33-44d6-a538-78b9fd54dd0e	4	48097218	48097218	C	A	SNP	TXK	ENST00000264316	human	ensembl	74_37	-1	known	missense	c.523	p.V175F	1.000	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	TXK	HGNC	ENSG00000074966	tier1	-	-	62	0	0.00	61	22	26.51	88	0	0.00	68	42	38.18
DPH2	0	genome.wustl.edu	37	1	44436462	44436462	+	Missense_Mutation	SNP	A	A	G			TCGA-Z4-AAPF-01A-11D-A38Z-09	TCGA-Z4-AAPF-10A-01D-A38Z-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18bdc8dd-e197-4e9f-8b9d-2f340e191aa7	0a413fb9-5f33-44d6-a538-78b9fd54dd0e	1	44436462	44436462	A	G	SNP	DPH2	ENST00000476260	human	ensembl	74_37	+1	known	missense	c.290	p.N97S	0.000	NULL	NULL	-	no_errors	DPH2	HGNC	ENSG00000132768	tier1	-	-	15	0	0.00	7	4	36.36	88	0	0.00	53	35	39.77
TGS1	0	genome.wustl.edu	37	8	56737232	56737232	+	Silent	SNP	C	C	T			TCGA-Z4-AAPF-01A-11D-A38Z-09	TCGA-Z4-AAPF-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18bdc8dd-e197-4e9f-8b9d-2f340e191aa7	0a413fb9-5f33-44d6-a538-78b9fd54dd0e	8	56737232	56737232	C	T	SNP	TGS1	ENST00000260129	human	ensembl	74_37	+1	known	silent	c.2532	p.D844	1.000	pfam_R_cap_Gua-N2-MeTrfase	pfam_R_cap_Gua-N2-MeTrfase,pfam_R_methylase_dom,pfam_tR_Trfase_Trm5/Tyw2	-	no_errors	TGS1	HGNC	ENSG00000137574	tier1	-	-	106	0	0.00	48	39	44.83	129	0	0.00	48	37	43.53
KRT5	0	genome.wustl.edu	37	12	52910467	52910467	+	Missense_Mutation	SNP	C	C	T			TCGA-Z4-AAPF-01A-11D-A38Z-09	TCGA-Z4-AAPF-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18bdc8dd-e197-4e9f-8b9d-2f340e191aa7	0a413fb9-5f33-44d6-a538-78b9fd54dd0e	12	52910467	52910467	C	T	SNP	KRT5	ENST00000252242	human	ensembl	74_37	-1	known	missense	c.1393	p.V465M	1.000	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT5	HGNC	ENSG00000186081	tier1	-	-	39	0	0.00	33	6	15.38	4	0	0.00	10	3	23.08
SPTB	0	genome.wustl.edu	37	14	65268039	65268039	+	Missense_Mutation	SNP	G	G	A			TCGA-Z4-AAPF-01A-11D-A38Z-09	TCGA-Z4-AAPF-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18bdc8dd-e197-4e9f-8b9d-2f340e191aa7	0a413fb9-5f33-44d6-a538-78b9fd54dd0e	14	65268039	65268039	G	A	SNP	SPTB	ENST00000389722	human	ensembl	74_37	-1	known	missense	c.727	p.R243C	1.000	pirsf_Spectrin_bsu,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Pleckstrin_homology,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTB	HGNC	ENSG00000070182	tier1	-	-	33	0	0.00	19	8	29.63	29	0	0.00	10	9	47.37
CACHD1	0	genome.wustl.edu	37	1	65157848	65157848	+	R	SNP	A	A	G			TCGA-Z4-AAPF-01A-11D-A38Z-09	TCGA-Z4-AAPF-10A-01D-A38Z-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18bdc8dd-e197-4e9f-8b9d-2f340e191aa7	0a413fb9-5f33-44d6-a538-78b9fd54dd0e	1	65157848	65157848	A	G	SNP	CACHD1	ENST00000470527	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CACHD1	HGNC	ENSG00000158966	tier1	-	-	48	0	0.00	28	17	37.78	124	0	0.00	78	32	29.09
MYBL1	0	genome.wustl.edu	37	8	67511292	67511292	+	Missense_Mutation	SNP	T	T	C			TCGA-Z4-AAPF-01A-11D-A38Z-09	TCGA-Z4-AAPF-10A-01D-A38Z-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18bdc8dd-e197-4e9f-8b9d-2f340e191aa7	0a413fb9-5f33-44d6-a538-78b9fd54dd0e	8	67511292	67511292	T	C	SNP	MYBL1	ENST00000522677	human	ensembl	74_37	-1	known	missense	c.284	p.D95G	1.000	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	pfam_C-myb_C,pfam_SANT/Myb,pfam_Tscrpt_reg_Wos2-domain,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYBL1	HGNC	ENSG00000185697	tier1	-	-	70	0	0.00	41	21	33.87	87	0	0.00	39	23	37.10
TAF1L	0	genome.wustl.edu	37	9	32635503	32635503	+	Silent	SNP	G	G	A			TCGA-Z4-AAPF-01A-11D-A38Z-09	TCGA-Z4-AAPF-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18bdc8dd-e197-4e9f-8b9d-2f340e191aa7	0a413fb9-5f33-44d6-a538-78b9fd54dd0e	9	32635503	32635503	G	A	SNP	TAF1L	ENST00000242310	human	ensembl	74_37	-1	known	silent	c.75	p.S25	1.000	pirsf_TAF1_animal,pfam_TAF_II_230-bd	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728	tier1	-	-	73	0	0.00	73	18	19.78	62	0	0.00	67	29	30.21
ME3	0	genome.wustl.edu	37	11	86160930	86160930	+	Splice_Site	SNP	C	C	T			TCGA-Z4-AAPF-01A-11D-A38Z-09	TCGA-Z4-AAPF-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18bdc8dd-e197-4e9f-8b9d-2f340e191aa7	0a413fb9-5f33-44d6-a538-78b9fd54dd0e	11	86160930	86160930	C	T	SNP	ME3	ENST00000359636	human	ensembl	74_37	-1	known	splice_site	c.1131+1	e9+1	1.000	-	-	-	no_errors	ME3	HGNC	ENSG00000151376	tier1	-	-	34	0	0.00	17	13	43.33	128	0	0.00	34	29	46.03
WWC1	0	genome.wustl.edu	37	5	167855148	167855148	+	Splice_Site	SNP	T	T	C			TCGA-Z4-AAPF-01A-11D-A38Z-09	TCGA-Z4-AAPF-10A-01D-A38Z-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18bdc8dd-e197-4e9f-8b9d-2f340e191aa7	0a413fb9-5f33-44d6-a538-78b9fd54dd0e	5	167855148	167855148	T	C	SNP	WWC1	ENST00000265293	human	ensembl	74_37	+1	known	splice_site	c.1919+2	e12+2	1.000	-	-	-	no_errors	WWC1	HGNC	ENSG00000113645	tier1	-	-	40	0	0.00	13	10	43.48	89	0	0.00	40	17	29.82
RAD50	0	genome.wustl.edu	37	5	131927091	131927091	+	Missense_Mutation	SNP	A	A	G			TCGA-Z4-AAPF-01A-11D-A38Z-09	TCGA-Z4-AAPF-10A-01D-A38Z-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18bdc8dd-e197-4e9f-8b9d-2f340e191aa7	0a413fb9-5f33-44d6-a538-78b9fd54dd0e	5	131927091	131927091	A	G	SNP	RAD50	ENST00000265335	human	ensembl	74_37	+1	known	missense	c.1628	p.K543R	1.000	superfamily_P-loop_NTPase,tigrfam_Rad50_eukaryotes	pfam_Rad50_Zn_hook,superfamily_P-loop_NTPase,superfamily_Prefoldin,pfscan_Zn_hook_Rad50,tigrfam_Rad50_eukaryotes	-	no_errors	RAD50	HGNC	ENSG00000113522	tier1	-	-	32	0	0.00	14	9	39.13	87	0	0.00	48	34	41.46
FBXO4	0	genome.wustl.edu	37	5	41929978	41929978	+	Missense_Mutation	SNP	A	A	C			TCGA-Z4-AAPF-01A-11D-A38Z-09	TCGA-Z4-AAPF-10A-01D-A38Z-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18bdc8dd-e197-4e9f-8b9d-2f340e191aa7	0a413fb9-5f33-44d6-a538-78b9fd54dd0e	5	41929978	41929978	A	C	SNP	FBXO4	ENST00000281623	human	ensembl	74_37	+1	known	missense	c.605	p.E202A	1.000	NULL	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO4	HGNC	ENSG00000151876	tier1	-	-	79	0	0.00	64	32	33.33	108	0	0.00	75	39	34.21
MED14	0	genome.wustl.edu	37	X	40585955	40585955	+	R	SNP	G	G	A			TCGA-Z4-AAPF-01A-11D-A38Z-09	TCGA-Z4-AAPF-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18bdc8dd-e197-4e9f-8b9d-2f340e191aa7	0a413fb9-5f33-44d6-a538-78b9fd54dd0e	X	40585955	40585955	G	A	SNP	MED14	ENST00000463072	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MED14	HGNC	ENSG00000180182	tier1	-	-	207	0	0.00	102	82	44.57	118	0	0.00	34	31	47.69
TBC1D31	0	genome.wustl.edu	37	8	124132405	124132405	+	Missense_Mutation	SNP	T	T	C			TCGA-Z4-AAPF-01A-11D-A38Z-09	TCGA-Z4-AAPF-10A-01D-A38Z-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18bdc8dd-e197-4e9f-8b9d-2f340e191aa7	0a413fb9-5f33-44d6-a538-78b9fd54dd0e	8	124132405	124132405	T	C	SNP	TBC1D31	ENST00000287380	human	ensembl	74_37	+1	known	missense	c.1547	p.F516S	1.000	pfam_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Rab-GTPase-TBC_dom,smart_WD40_repeat,pfscan_Rab-GTPase-TBC_dom,pfscan_WD40_repeat_dom	-	no_errors	TBC1D31	HGNC	ENSG00000156787	tier1	-	-	50	0	0.00	27	22	44.90	91	0	0.00	45	31	40.79
PDLIM5	0	genome.wustl.edu	37	4	95506840	95506840	+	Nonsense_Mutation	SNP	C	C	T			TCGA-Z4-AAPF-01A-11D-A38Z-09	TCGA-Z4-AAPF-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18bdc8dd-e197-4e9f-8b9d-2f340e191aa7	0a413fb9-5f33-44d6-a538-78b9fd54dd0e	4	95506840	95506840	C	T	SNP	PDLIM5	ENST00000317968	human	ensembl	74_37	+1	known	nonsense	c.835	p.Q279*	1.000	NULL	pfam_Znf_LIM,pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_Znf_LIM,pfscan_Znf_LIM,pfscan_PDZ	-	no_errors	PDLIM5	HGNC	ENSG00000163110	tier1	-	-	21	0	0.00	41	14	25.45	38	0	0.00	44	28	38.89
ABCB8	0	genome.wustl.edu	37	7	150730556	150730556	+	R	SNP	T	T	A			TCGA-Z4-AAPF-01A-11D-A38Z-09	TCGA-Z4-AAPF-10A-01D-A38Z-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18bdc8dd-e197-4e9f-8b9d-2f340e191aa7	0a413fb9-5f33-44d6-a538-78b9fd54dd0e	7	150730556	150730556	T	A	SNP	ABCB8	ENST00000466956	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ABCB8	HGNC	ENSG00000197150	tier1	-	-	16	0	0.00	3	9	75.00	40	0	0.00	23	21	47.73
CYFIP2	0	genome.wustl.edu	37	5	156751051	156751053	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-Z4-AAPF-01A-11D-A38Z-09	TCGA-Z4-AAPF-10A-01D-A38Z-09	CTT	CTT	CTT	-	CTT	CTT	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18bdc8dd-e197-4e9f-8b9d-2f340e191aa7	0a413fb9-5f33-44d6-a538-78b9fd54dd0e	5	156751051	156751053	CTT	-	DEL	CYFIP2	ENST00000318218	human	ensembl	74_37	+1	known	in_frame_del	c.1869_1871	p.F626in_frame_del	1.000:1.000:1.000	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP2	HGNC	ENSG00000055163	tier1			38	0	0.00	18	5	21.74	54	0	0.00	37	12	24.49
DERL3	0	genome.wustl.edu	37	22	24176678	24176700	+	R	DEL	CAACAGGTCATGTTCAATTTCTT	CAACAGGTCATGTTCAATTTCTT	-			TCGA-Z4-AAPF-01A-11D-A38Z-09	TCGA-Z4-AAPF-10A-01D-A38Z-09	CAACAGGTCATGTTCAATTTCTT	CAACAGGTCATGTTCAATTTCTT	CAACAGGTCATGTTCAATTTCTT	-	CAACAGGTCATGTTCAATTTCTT	CAACAGGTCATGTTCAATTTCTT	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	18bdc8dd-e197-4e9f-8b9d-2f340e191aa7	0a413fb9-5f33-44d6-a538-78b9fd54dd0e	22	24176678	24176700	CAACAGGTCATGTTCAATTTCTT	-	DEL	DERL3	ENST00000464023	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.881:0.744:0.541:0.169:0.191:0.247:0.273:0.214:0.004:0.003:0.003:0.004:0.017:0.025:0.031:0.034:0.036:0.045:0.051:0.010:0.016:0.016:0.010	-	-	-	no_errors	DERL3	HGNC	ENSG00000099958	tier1			64	1	1.54	14	2	12.50	64	1	1.54	14	2	12.50
DCHS1	0	genome.wustl.edu	37	11	6662746	6662748	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-Z4-AAPF-01A-11D-A38Z-09	TCGA-Z4-AAPF-10A-01D-A38Z-09	CAG	CAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	18bdc8dd-e197-4e9f-8b9d-2f340e191aa7	0a413fb9-5f33-44d6-a538-78b9fd54dd0e	11	6662746	6662748	CAG	-	DEL	DCHS1	ENST00000299441	human	ensembl	74_37	-1	known	in_frame_del	c.99_97	p.L33in_frame_del	1.000:1.000:1.000	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341	tier1			54	0	0.00	38	6	13.64	17	0	0.00	8	0	0.00
FOXC1	0	genome.wustl.edu	37	6	1612142	1612144	+	In_Frame_Del	DEL	GCG	GCG	-			TCGA-Z4-AAPF-01A-11D-A38Z-09	TCGA-Z4-AAPF-10A-01D-A38Z-09	GCG	GCG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	18bdc8dd-e197-4e9f-8b9d-2f340e191aa7	0a413fb9-5f33-44d6-a538-78b9fd54dd0e	6	1612142	1612144	GCG	-	DEL	FOXC1	ENST00000380874	human	ensembl	74_37	+1	known	in_frame_del	c.1462_1464	p.A491in_frame_del	0.998:0.998:0.994	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXC1	HGNC	ENSG00000054598	tier1			26	0	0.00	25	3	10.71	5	0	0.00	4	0	0.00
IBA57	0	genome.wustl.edu	37	1	228362561	228362561	+	Silent	SNP	C	C	T			TCGA-Z4-AAPF-01A-11D-A38Z-09	TCGA-Z4-AAPF-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	18bdc8dd-e197-4e9f-8b9d-2f340e191aa7	0a413fb9-5f33-44d6-a538-78b9fd54dd0e	1	228362561	228362561	C	T	SNP	IBA57	ENST00000366711	human	ensembl	74_37	+1	known	silent	c.510	p.C170	0.000	pfam_GCV_T_N	pfam_GCV_T_N,pfam_GCV_T_C,tigrfam_YgfZ/GcvT_CS	-	no_errors	IBA57	HGNC	ENSG00000181873	tier1	-	-	26	0	0.00	24	4	14.29	8	0	0.00	8	0	0.00
MIR4310	0	genome.wustl.edu	37	15	42158730	42158730	+	R	SNP	G	G	T			TCGA-Z4-AAPF-01A-11D-A38Z-09	TCGA-Z4-AAPF-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	18bdc8dd-e197-4e9f-8b9d-2f340e191aa7	0a413fb9-5f33-44d6-a538-78b9fd54dd0e	15	42158730	42158730	G	T	SNP	MIR4310	ENST00000582950	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIR4310	HGNC	ENSG00000264850	tier1	-	-	22	0	0.00	16	4	20.00	17	0	0.00	9	0	0.00
ENSG00000263120	0	genome.wustl.edu	37	17	55062464	55062465	+	R	INS	-	-	GAAAA			TCGA-Z4-AAPF-01A-11D-A38Z-09	TCGA-Z4-AAPF-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	18bdc8dd-e197-4e9f-8b9d-2f340e191aa7	0a413fb9-5f33-44d6-a538-78b9fd54dd0e	17	55062464	55062465	-	GAAAA	INS	ENSG00000263120	ENST00000572877	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.001	-	-	-	no_errors	RP5-1107A17.4	Clone_based_vega_gene	ENSG00000263120	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
ENSG00000268812	0	genome.wustl.edu	37	22	30642572	30642573	+	R	INS	-	-	G			TCGA-Z4-AAPF-01A-11D-A38Z-09	TCGA-Z4-AAPF-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	18bdc8dd-e197-4e9f-8b9d-2f340e191aa7	0a413fb9-5f33-44d6-a538-78b9fd54dd0e	22	30642572	30642573	-	G	INS	ENSG00000268812	ENST00000593843	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.129:0.123	-	-	-	no_errors	RP1-102K2.8	Clone_based_vega_gene	ENSG00000268812	tier1			47	0	0.00	16	2	11.11	2	0	0.00	0	0	0.00
FOXF2	0	genome.wustl.edu	37	6	1391085	1391086	+	In_Frame_Ins	INS	-	-	GGC			TCGA-Z4-AAPF-01A-11D-A38Z-09	TCGA-Z4-AAPF-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	18bdc8dd-e197-4e9f-8b9d-2f340e191aa7	0a413fb9-5f33-44d6-a538-78b9fd54dd0e	6	1391085	1391086	-	GGC	INS	FOXF2	ENST00000259806	human	ensembl	74_37	+1	known	in_frame_ins	c.903_904	p.305in_frame_insG	0.009:0.179	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXF2	HGNC	ENSG00000137273	tier1			9	0	0.00	8	3	27.27	1	0	0.00	0	0	0.00
FOXO3	0	genome.wustl.edu	37	6	108882648	108882650	+	In_Frame_Del	DEL	CGG	CGG	-			TCGA-Z4-AAPF-01A-11D-A38Z-09	TCGA-Z4-AAPF-10A-01D-A38Z-09	CGG	CGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	18bdc8dd-e197-4e9f-8b9d-2f340e191aa7	0a413fb9-5f33-44d6-a538-78b9fd54dd0e	6	108882648	108882650	CGG	-	DEL	FOXO3	ENST00000343882	human	ensembl	74_37	+1	known	in_frame_del	c.237_239	p.G83in_frame_del	0.964:0.974:0.982	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXO3	HGNC	ENSG00000118689	tier1			15	0	0.00	6	2	25.00	1	0	0.00	2	0	0.00
LOC101927601	0	genome.wustl.edu	37	15	82637615	82637615	+	Silent	SNP	A	A	T			TCGA-Z4-AAPF-01A-11D-A38Z-09	TCGA-Z4-AAPF-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	18bdc8dd-e197-4e9f-8b9d-2f340e191aa7	0a413fb9-5f33-44d6-a538-78b9fd54dd0e	15	82637615	82637615	A	T	SNP	LOC101927601	ENST00000439287	human	ensembl	74_37	-1	known	silent	c.471	p.S157	0.083	NULL	NULL	-	no_errors	GOLGA6L10	Uniprot_gn	ENSG00000205281	tier1	-	-	22	0	0.00	16	6	27.27	0	0	0.00	0	0	0.00
MMP17	0	genome.wustl.edu	37	12	132313098	132313099	+	In_Frame_Ins	INS	-	-	GCTGCCGCT			TCGA-Z4-AAPF-01A-11D-A38Z-09	TCGA-Z4-AAPF-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	18bdc8dd-e197-4e9f-8b9d-2f340e191aa7	0a413fb9-5f33-44d6-a538-78b9fd54dd0e	12	132313098	132313099	-	GCTGCCGCT	INS	MMP17	ENST00000360564	human	ensembl	74_37	+1	known	in_frame_ins	c.59_60	p.24in_frame_insLPL	0.023:0.052	pirsf_Pept_M10A_Metazoans	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,pirsf_Pept_M10A_Metazoans,prints_Pept_M10A	-	no_errors	MMP17	HGNC	ENSG00000198598	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
RNF126	0	genome.wustl.edu	37	19	648399	648399	+	Missense_Mutation	SNP	G	G	C			TCGA-Z4-AAPF-01A-11D-A38Z-09	TCGA-Z4-AAPF-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	18bdc8dd-e197-4e9f-8b9d-2f340e191aa7	0a413fb9-5f33-44d6-a538-78b9fd54dd0e	19	648399	648399	G	C	SNP	RNF126	ENST00000292363	human	ensembl	74_37	-1	known	missense	c.759	p.D253E	0.992	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF126	HGNC	ENSG00000070423	tier1	-	-	14	0	0.00	5	5	50.00	4	0	0.00	4	5	55.56
