Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
TUBBP5	643224	broad.mit.edu	37	9	141070116	141070116	+	RNA	SNP	G	G	A	rs142836124	by1000genomes	TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr9:141070116G>A	ENST00000503395.1	+	0	1196																		p.R77H(1)									GACTCTGTGCGCTCGGGGCCC	0.687000													4	102					0	0	1	0	0
PARP10	84875	broad.mit.edu	37	8	145052111	145052111	+	Missense_Mutation	SNP	C	C	T			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr8:145052111C>T	ENST00000313028.7	-	10	2789	c.2695G>A	c.(2695-2697)Gcc>Acc	p.A899T	PARP10_ENST00000524918.1_Missense_Mutation_p.A890T|PARP10_ENST00000525773.1_Missense_Mutation_p.A911T	NM_032789.3	NP_116178.2	Q53GL7	PAR10_HUMAN	poly (ADP-ribose) polymerase family, member 10	899	Myc binding.|PARP catalytic.					Golgi apparatus|nucleolus	NAD+ ADP-ribosyltransferase activity|nucleotide binding			NS(1)|breast(2)|endometrium(2)|kidney(1)|large_intestine(5)|lung(9)|ovary(4)|pancreas(1)|upper_aerodigestive_tract(2)	27	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.31e-40)|Epithelial(56;1.16e-39)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			AAGCCGTGGGCGCAGATGTCA	0.721000													6	40					0	0	1	0	0
FBXO25	26260	broad.mit.edu	37	8	401279	401279	+	Silent	SNP	C	C	T			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr8:401279C>T	ENST00000352684.2	+	6	702	c.285C>T	c.(283-285)gaC>gaT	p.D95D	FBXO25_ENST00000276326.5_Silent_p.D162D|FBXO25_ENST00000350302.3_Silent_p.D162D|FBXO25_ENST00000382824.1_Silent_p.D95D|RP11-91J19.3_ENST00000607549.1_RNA	NM_012173.3	NP_036305.2	Q8TCJ0	FBX25_HUMAN	F-box protein 25	162				IYVHKESTKE -> LILTSVLLFQ (in Ref. 4; AAF04526).		nucleus|SCF ubiquitin ligase complex	actin binding|ubiquitin-protein ligase activity			cervix(1)|endometrium(1)|kidney(1)|large_intestine(1)|lung(3)|ovary(1)|pancreas(1)|prostate(1)	10		Ovarian(12;0.00965)|Colorectal(14;0.0815)|Myeloproliferative disorder(644;0.116)|all_neural(12;0.122)		Epithelial(5;3.14e-14)|OV - Ovarian serous cystadenocarcinoma(5;1.56e-07)|BRCA - Breast invasive adenocarcinoma(11;1.88e-06)		TTCTTGATGACCACCACAATC	0.358000													4	70					0	0	1	0	0
ZNF14	7561	broad.mit.edu	37	19	19824960	19824960	+	Splice_Site	SNP	C	C	A			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr19:19824960C>A	ENST00000344099.3	-	3	269	c.130_splice	c.e3-1	p.G44_splice		NM_021030.2	NP_066358.2	P17017	ZNF14_HUMAN	zinc finger protein 14	44	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)|cervix(2)|endometrium(1)|large_intestine(9)|lung(8)|ovary(4)|prostate(2)|skin(2)|upper_aerodigestive_tract(3)	32		Renal(1328;0.0474)				CCACTTTTTTCCTAAAATGCA	0.383000													12	113					0.000219431	0.000233438	1	1	0
SPINT1	6692	broad.mit.edu	37	15	41148987	41148987	+	Silent	SNP	C	C	T			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr15:41148987C>T	ENST00000344051.4	+	11	1638	c.1404C>T	c.(1402-1404)gtC>gtT	p.V468V	SPINT1_ENST00000431806.1_Silent_p.V452V|SPINT1_ENST00000562057.1_Silent_p.V452V			O43278	SPIT1_HUMAN	serine peptidase inhibitor, Kunitz type 1	468						extracellular region|membrane fraction	protein binding|serine-type endopeptidase inhibitor activity			central_nervous_system(1)|kidney(2)|large_intestine(1)|lung(9)|ovary(1)|prostate(1)|skin(1)	16		all_cancers(109;1.35e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;9.68e-11)|all_lung(180;2.25e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;2.91e-05)|COAD - Colon adenocarcinoma(120;0.153)|BRCA - Breast invasive adenocarcinoma(123;0.166)		AGATGGCTGTCGCAGTGTTCC	0.562000													10	166					0	0	1	0	0
SMC5	23137	broad.mit.edu	37	9	72933446	72933446	+	Missense_Mutation	SNP	G	G	A			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr9:72933446G>A	ENST00000361138.5	+	14	1881	c.1823G>A	c.(1822-1824)cGa>cAa	p.R608Q		NM_015110.3	NP_055925.2	Q8IY18	SMC5_HUMAN	structural maintenance of chromosomes 5	608	Flexible hinge.				DNA recombination|DNA repair	chromosome|nucleus	ATP binding			breast(1)|central_nervous_system(3)|endometrium(3)|kidney(4)|large_intestine(8)|lung(9)|ovary(2)|prostate(1)|skin(4)	35						CAAGAAACCCGATTAAAACAG	0.279000													8	144					0	0	1	0	0
MAP2	4133	broad.mit.edu	37	2	210560829	210560829	+	Missense_Mutation	SNP	C	C	T			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr2:210560829C>T	ENST00000360351.4	+	7	4441	c.3935C>T	c.(3934-3936)gCa>gTa	p.A1312V	MAP2_ENST00000447185.1_Missense_Mutation_p.A1308V|MAP2_ENST00000392194.1_Intron|MAP2_ENST00000199940.6_Intron|MAP2_ENST00000361559.4_Intron	NM_002374.3	NP_002365.3	P11137	MAP2_HUMAN	microtubule-associated protein 2	1312					central nervous system neuron development|dendrite morphogenesis|negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	beta-dystroglycan binding|calmodulin binding|structural molecule activity			breast(7)|central_nervous_system(1)|cervix(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(2)|kidney(2)|large_intestine(36)|liver(2)|lung(42)|ovary(11)|pancreas(2)|prostate(2)|skin(2)|stomach(4)|upper_aerodigestive_tract(4)|urinary_tract(1)	124		Hepatocellular(293;0.137)|Lung NSC(271;0.163)|Renal(323;0.202)		UCEC - Uterine corpus endometrioid carcinoma (47;6.64e-05)|Epithelial(149;3.12e-100)|all cancers(144;6.88e-91)|Lung(261;0.0624)|LUSC - Lung squamous cell carcinoma(261;0.0662)|STAD - Stomach adenocarcinoma(1183;0.18)	Estramustine(DB01196)	GTGCGTTTTGCAGCCCTAGAG	0.507000													4	121					0	0	1	0	0
XPO4	64328	broad.mit.edu	37	13	21357905	21357905	+	Missense_Mutation	SNP	C	C	G			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr13:21357905C>G	ENST00000400602.2	-	23	3447	c.3412G>C	c.(3412-3414)Gaa>Caa	p.E1138Q	XPO4_ENST00000255305.6_Missense_Mutation_p.E1138Q	NM_022459.4	NP_071904.4	Q9C0E2	XPO4_HUMAN	exportin 4	1138					protein transport	cytoplasm|nucleus	protein binding			breast(1)|endometrium(10)|kidney(4)|large_intestine(7)|lung(14)|ovary(1)|prostate(3)|upper_aerodigestive_tract(1)	41		all_cancers(29;5.05e-24)|all_epithelial(30;5.56e-20)|all_lung(29;2.38e-16)|Lung SC(185;0.0262)|Hepatocellular(188;0.244)		all cancers(112;0.000521)|Epithelial(112;0.000892)|OV - Ovarian serous cystadenocarcinoma(117;0.0148)|Lung(94;0.0189)|LUSC - Lung squamous cell carcinoma(192;0.0548)		ATAAATTCTTCTAAACTCTTT	0.403000													15	209					0	0	1	0	0
IGHA1	3493	broad.mit.edu	37	14	106173575	106173575	+	RNA	SNP	C	C	T			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr14:106173575C>T	ENST00000390547.2	-	0	991																											ACCCGCCAAGCGGTCGATGGT	0.632000													12	48					0	0	1	0	0
CYTH2	9266	broad.mit.edu	37	19	48976636	48976636	+	Splice_Site	SNP	G	G	A			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr19:48976636G>A	ENST00000427476.1	+	5	734		c.e5+1		CYTH2_ENST00000452733.2_Splice_Site	NM_004228.6|NM_017457.5	NP_004219.3|NP_059431.1	Q99418	CYH2_HUMAN	cytohesin 2						actin cytoskeleton organization|endocytosis|regulation of ARF protein signal transduction|regulation of cell adhesion	cytoplasm|membrane fraction|plasma membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			endometrium(1)|kidney(2)|large_intestine(1)|lung(6)|ovary(2)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	15						AGGCCCTCAGGTGAGTGAGGG	0.507000													8	66					0	0	1	0	0
MIR4485	100616263	broad.mit.edu	37	MT	1884	1884	+	RNA	SNP	G	G	A			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chrM:1884G>A	ENST00000387347.2	+	0	214					NR_039705.1																						TAACTTTGCAAGGAGAGCCAA	0.403000													11	79					0	0	1	0	0
AGAP1	116987	broad.mit.edu	37	2	236708163	236708163	+	Silent	SNP	C	C	T			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr2:236708163C>T	ENST00000409538.1	+	8	2245	c.1749C>T	c.(1747-1749)ttC>ttT	p.F583F	AGAP1_ENST00000428334.2_Silent_p.F157F|AGAP1_ENST00000336665.5_Silent_p.F318F|AGAP1_ENST00000304032.7_Silent_p.F318F|AGAP1_ENST00000409457.1_Silent_p.F318F			Q9UPQ3	AGAP1_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	318	PH.				protein transport|regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytoplasm	ARF GTPase activator activity|GTP binding|zinc ion binding			breast(2)|endometrium(6)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(12)|lung(11)|ovary(2)|prostate(1)|skin(3)|upper_aerodigestive_tract(1)	41						CCAACCTGTTCACCGTGAGTG	0.542000													11	69					0	0	1	0	0
F13A1	2162	broad.mit.edu	37	6	6318796	6318796	+	Silent	SNP	G	G	A			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr6:6318796G>A	ENST00000264870.3	-	2	367	c.102C>T	c.(100-102)ggC>ggT	p.G34G		NM_000129.3	NP_000120.2	P00488	F13A_HUMAN	coagulation factor XIII, A1 polypeptide	34					peptide cross-linking|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			NS(1)|autonomic_ganglia(1)|breast(2)|central_nervous_system(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(10)|lung(37)|ovary(2)|pancreas(1)|prostate(1)|skin(2)|upper_aerodigestive_tract(1)	62	Ovarian(93;0.0816)	all_hematologic(90;0.152)			L-Glutamine(DB00130)	GGGGCACCACGCCCTGAAGCT	0.617000													16	151					0	0	1	0	0
AFM	173	broad.mit.edu	37	4	74364894	74364894	+	Silent	SNP	C	C	T			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr4:74364894C>T	ENST00000226355.3	+	11	1446	c.1353C>T	c.(1351-1353)ggC>ggT	p.G451G		NM_001133.2	NP_001124.1	P43652	AFAM_HUMAN	afamin	451	Albumin 3.				vitamin transport		vitamin E binding			breast(2)|central_nervous_system(2)|endometrium(2)|kidney(1)|large_intestine(8)|lung(9)|ovary(2)|skin(2)|upper_aerodigestive_tract(2)|urinary_tract(2)	32	Breast(15;0.00102)		Epithelial(6;5.69e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|all cancers(17;0.000555)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			TGTCTCTTGGCGAGAAAATGG	0.448000													6	60					0	0	1	0	0
OR5M10	390167	broad.mit.edu	37	11	56344734	56344734	+	Missense_Mutation	SNP	T	T	C			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr11:56344734T>C	ENST00000526812.2	-	1	529	c.464A>G	c.(463-465)aAt>aGt	p.N155S		NM_001004741.1	NP_001004741.1	Q6IEU7	OR5MA_HUMAN	olfactory receptor, family 5, subfamily M, member 10	155					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|cervix(1)|endometrium(2)|large_intestine(2)|lung(15)|upper_aerodigestive_tract(2)|urinary_tract(2)	25						AGAGAGCCCATTAAGGAAGCC	0.468000													21	140					0	0	1	0	0
SNPH	9751	broad.mit.edu	37	20	1286074	1286074	+	Silent	SNP	C	C	T			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr20:1286074C>T	ENST00000381867.1	+	7	1635	c.993C>T	c.(991-993)ttC>ttT	p.F331F	SNPH_ENST00000381873.3_Silent_p.F287F			O15079	SNPH_HUMAN	syntaphilin	287					synaptic vesicle docking involved in exocytosis	cell junction|integral to membrane|synapse|synaptosome	syntaxin-1 binding			endometrium(2)|large_intestine(4)|lung(10)|ovary(4)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	23						GCCCCCGCTTCCCTGCCAGCA	0.657000													6	80					0	0	1	0	0
WASH3P	374666	broad.mit.edu	37	15	102515241	102515241	+	RNA	SNP	T	T	C	rs144736022		TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr15:102515241T>C	ENST00000557932.1	+	0	1087																				central_nervous_system(1)|endometrium(6)|kidney(11)|prostate(5)|stomach(1)|urinary_tract(1)	25						GGGAAGTGGTTGACCCCTCCG	0.642000													5	26					0	0	1	0	0
ZNF506	440515	broad.mit.edu	37	19	19905397	19905397	+	Silent	SNP	A	A	C			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr19:19905397A>C	ENST00000443905.2	-	4	1446	c.1299T>G	c.(1297-1299)ctT>ctG	p.L433L	ZNF506_ENST00000540806.2_Silent_p.L433L|ZNF506_ENST00000450683.2_Silent_p.L401L|CTC-559E9.6_ENST00000591884.1_RNA|CTC-559E9.4_ENST00000590274.1_lincRNA|ZNF506_ENST00000587461.1_Intron|CTC-559E9.6_ENST00000589657.1_RNA			Q5JVG8	ZN506_HUMAN	zinc finger protein 506	433					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|zinc ion binding			breast(1)|endometrium(1)|large_intestine(7)|lung(3)|skin(1)|stomach(1)	14						GAACATTTAAAAGATTTTCCA	0.363000													4	104					0	0	1	0	0
CDH10	1008	broad.mit.edu	37	5	24492935	24492935	+	Missense_Mutation	SNP	C	C	A			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr5:24492935C>A	ENST00000264463.4	-	10	2122	c.1615G>T	c.(1615-1617)Gat>Tat	p.D539Y	CDH10_ENST00000502921.1_5'UTR	NM_006727.3	NP_006718.2	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 (T2-cadherin)	539	Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding	p.D539Y(1)		NS(1)|breast(8)|central_nervous_system(2)|cervix(1)|endometrium(9)|kidney(2)|large_intestine(29)|lung(111)|ovary(6)|pancreas(6)|skin(4)|stomach(2)|upper_aerodigestive_tract(4)	185				STAD - Stomach adenocarcinoma(35;0.0556)		CCTTCATTATCCTGTACTGTG	0.338000										HNSCC(23;0.051)			10	214					4.36969e-10	4.85521e-10	1	1	0
DUS3L	56931	broad.mit.edu	37	19	5787318	5787318	+	Missense_Mutation	SNP	C	C	A			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr19:5787318C>A	ENST00000309061.7	-	7	1363	c.1267G>T	c.(1267-1269)Ggc>Tgc	p.G423C	DUS3L_ENST00000320699.8_Missense_Mutation_p.G181C	NM_020175.2	NP_064560.2	Q96G46	DUS3L_HUMAN	dihydrouridine synthase 3-like (S. cerevisiae)	423					tRNA processing		flavin adenine dinucleotide binding|nucleic acid binding|tRNA dihydrouridine synthase activity|zinc ion binding			endometrium(1)|kidney(1)|large_intestine(1)|lung(8)|prostate(1)|skin(2)	14						TGGTTCATGCCACGGACGATC	0.662000													9	39					0.0692343	0.0706473	1	1	0
ATP1A2	477	broad.mit.edu	37	1	160104348	160104348	+	Silent	SNP	T	T	C			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr1:160104348T>C	ENST00000361216.3	+	14	1991	c.1902T>C	c.(1900-1902)ggT>ggC	p.G634G	ATP1A2_ENST00000472488.1_3'UTR|ATP1A2_ENST00000392233.3_Silent_p.G634G	NM_000702.3	NP_000693.1	P50993	AT1A2_HUMAN	ATPase, Na+/K+ transporting, alpha 2 polypeptide	634					ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			NS(1)|autonomic_ganglia(1)|breast(4)|central_nervous_system(3)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(13)|lung(30)|ovary(2)|skin(3)|upper_aerodigestive_tract(1)	69	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			TATCAGAGGGTAACGAGACTG	0.557000													9	116					0	0	1	0	0
PSD4	23550	broad.mit.edu	37	2	113955151	113955151	+	Silent	SNP	C	C	T			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr2:113955151C>T	ENST00000245796.6	+	13	2592	c.2397C>T	c.(2395-2397)ggC>ggT	p.G799G	PSD4_ENST00000441564.2_Silent_p.G771G	NM_012455.2	NP_036587.2	Q8NDX1	PSD4_HUMAN	pleckstrin and Sec7 domain containing 4	799	PH.				regulation of ARF protein signal transduction	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			cervix(1)|endometrium(2)|large_intestine(4)|lung(13)|ovary(4)|skin(2)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	29						CGCCATGGGGCAAGCGTGGCT	0.547000													7	53					0	0	1	0	0
CYP2A13	1553	broad.mit.edu	37	19	41600994	41600994	+	Missense_Mutation	SNP	C	C	T			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr19:41600994C>T	ENST00000330436.3	+	8	1292	c.1292C>T	c.(1291-1293)cCc>cTc	p.P431L		NM_000766.4	NP_000757.2	Q16696	CP2AD_HUMAN	cytochrome P450, family 2, subfamily A, polypeptide 13	431					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|coumarin 7-hydroxylase activity|electron carrier activity|heme binding			breast(3)|endometrium(6)|kidney(4)|large_intestine(8)|lung(13)|ovary(3)|prostate(3)|skin(2)	42					Clomipramine(DB01242)|Nicotine(DB00184)	GCTTTTGTGCCCTTTTCCATC	0.572000													23	144					0	0	1	0	0
ZNF681	148213	broad.mit.edu	37	19	23926951	23926951	+	Silent	SNP	T	T	C			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr19:23926951T>C	ENST00000402377.3	-	4	1542	c.1401A>G	c.(1399-1401)acA>acG	p.T467T	ZNF681_ENST00000395385.3_Silent_p.T398T	NM_138286.2	NP_612143.2	Q96N22	ZN681_HUMAN	zinc finger protein 681	467					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|endometrium(1)|large_intestine(4)|lung(10)|prostate(1)|skin(1)|urinary_tract(3)	21		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				TTCTTTTATGTGTAGTAAGGT	0.353000													10	74					0	0	1	0	0
ACTN2	88	broad.mit.edu	37	1	236910965	236910965	+	Splice_Site	SNP	A	A	G			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr1:236910965A>G	ENST00000366578.4	+	13	1572		c.e13-1		ACTN2_ENST00000546208.1_Splice_Site|ACTN2_ENST00000542672.1_Splice_Site	NM_001103.2|NM_001278343.1	NP_001094.1|NP_001265272.1	P35609	ACTN2_HUMAN	actinin, alpha 2						focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			endometrium(4)|kidney(2)|large_intestine(15)|lung(55)|ovary(4)|prostate(3)|skin(3)	86	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			CACTTTTAATAGTGAACTGGA	0.373000													7	43					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141760113	141760113	+	Silent	SNP	C	C	G			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr7:141760113C>G	ENST00000475668.2	+	34	4116	c.4062C>G	c.(4060-4062)gtC>gtG	p.V1354V	MGAM_ENST00000549489.2_Silent_p.V1354V			O43451	MGA_HUMAN	maltase-glucoamylase (alpha-glucosidase)	1354	Glucoamylase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			cervix(1)|endometrium(1)|large_intestine(4)|lung(3)|ovary(2)|skin(2)	13	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	CTCCATAGGTCTGGCCTGATT	0.428000													9	42					0	0	1	0	0
ALG1L2	644974	broad.mit.edu	37	3	129817028	129817028	+	RNA	SNP	G	G	C			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr3:129817028G>C	ENST00000507643.1	+	0	647							C9J202	AG1L2_HUMAN							biosynthetic process		transferase activity, transferring glycosyl groups										ACCTGGGATGGGGTGGGGACA	0.542000													3	37					0	0	1	0	0
PLEKHG6	55200	broad.mit.edu	37	12	6436520	6436520	+	Missense_Mutation	SNP	G	G	A	rs141304328		TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr12:6436520G>A	ENST00000449001.2	+	14	2169	c.1675G>A	c.(1675-1677)Ggc>Agc	p.G559S	PLEKHG6_ENST00000304581.8_Missense_Mutation_p.G121S|PLEKHG6_ENST00000011684.7_Missense_Mutation_p.G591S|PLEKHG6_ENST00000396988.3_Missense_Mutation_p.G591S	NM_001144857.1	NP_001138329.1	Q3KR16	PKHG6_HUMAN	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	591					regulation of Rho protein signal transduction	cleavage furrow|cytoplasm|spindle pole	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity	p.G591C(1)		autonomic_ganglia(1)|breast(1)|central_nervous_system(1)|kidney(3)|large_intestine(4)|lung(6)|ovary(1)|prostate(2)|skin(4)	23						CTCTGGCTACGGCACTTTGAT	0.607000											OREG0021622	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	239					0	0	1	0	0
FCRL1	115350	broad.mit.edu	37	1	157771307	157771307	+	Missense_Mutation	SNP	G	G	A			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr1:157771307G>A	ENST00000368176.3	-	6	1014	c.947C>T	c.(946-948)aCc>aTc	p.T316I	FCRL1_ENST00000489998.1_Intron|FCRL1_ENST00000358292.3_Intron|FCRL1_ENST00000491942.1_Missense_Mutation_p.T316I	NM_001159398.1|NM_052938.4	NP_001152870.1|NP_443170.1	Q96LA6	FCRL1_HUMAN	Fc receptor-like 1	316						integral to membrane|plasma membrane	receptor activity			breast(2)|cervix(1)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(1)|lung(24)|ovary(4)|prostate(1)|skin(6)	42	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			TGGACCAAGGGTGCTGAGCAG	0.478000													5	74					0	0	1	0	0
FUT8	2530	broad.mit.edu	37	14	66135996	66135996	+	Silent	SNP	G	G	A			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr14:66135996G>A	ENST00000360689.5	+	7	2360	c.633G>A	c.(631-633)gtG>gtA	p.V211V	FUT8_ENST00000557164.1_Silent_p.V48V|FUT8_ENST00000394585.1_Silent_p.V211V|FUT8_ENST00000394586.2_Silent_p.V211V|FUT8_ENST00000358307.2_Silent_p.V82V|FUT8_ENST00000554765.1_3'UTR	NM_004480.4|NM_178155.2	NP_004471.4|NP_835368.1	Q9BYC5	FUT8_HUMAN	fucosyltransferase 8 (alpha (1,6) fucosyltransferase)	211					in utero embryonic development|L-fucose catabolic process|N-glycan processing|oligosaccharide biosynthetic process|post-translational protein modification|protein glycosylation in Golgi|protein N-linked glycosylation via asparagine	Golgi cisterna membrane|integral to membrane	glycoprotein 6-alpha-L-fucosyltransferase activity|SH3 domain binding			endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(2)|lung(12)|ovary(1)|prostate(2)|stomach(1)|upper_aerodigestive_tract(2)	22				all cancers(60;0.00109)|OV - Ovarian serous cystadenocarcinoma(108;0.00242)|BRCA - Breast invasive adenocarcinoma(234;0.0114)		AAAAGCTGGTGTGTAATATCA	0.433000													8	72					0	0	1	0	0
HERC2P3	283755	broad.mit.edu	37	15	20644684	20644684	+	RNA	SNP	G	G	C			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr15:20644684G>C	ENST00000428453.1	-	0	3187																				central_nervous_system(1)|endometrium(11)|kidney(2)|large_intestine(1)|lung(14)|pancreas(1)|prostate(2)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)	35						ACAGGGAAGGGAGACGGCCAC	0.632000													3	15					0	0	1	0	0
ZNF653	115950	broad.mit.edu	37	19	11598443	11598443	+	Missense_Mutation	SNP	C	C	T	rs148120504	byFrequency	TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr19:11598443C>T	ENST00000293771.5	-	4	971	c.835G>A	c.(835-837)Gtg>Atg	p.V279M	CTC-398G3.6_ENST00000585656.1_Intron	NM_138783.3	NP_620138.2	Q96CK0	ZN653_HUMAN	zinc finger protein 653	279					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			endometrium(2)|kidney(3)|large_intestine(2)|lung(8)|prostate(1)|skin(1)	17						GGCACCGGCACGCACACCACT	0.677000													7	112					0	0	1	0	0
CHGB	1114	broad.mit.edu	37	20	5902991	5902991	+	Silent	SNP	C	C	T			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr20:5902991C>T	ENST00000378961.4	+	4	405	c.201C>T	c.(199-201)gaC>gaT	p.D67D		NM_001819.2	NP_001810.2	P05060	SCG1_HUMAN	chromogranin B (secretogranin 1)	67						extracellular region	hormone activity			breast(7)|kidney(2)|large_intestine(8)|lung(19)|ovary(1)|pancreas(2)|skin(5)|stomach(2)|upper_aerodigestive_tract(1)	47						GTAGAAAAGACGTCAAAGACA	0.408000													7	57					0	0	1	0	0
ZFYVE1	53349	broad.mit.edu	37	14	73464799	73464799	+	Silent	SNP	C	C	T			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr14:73464799C>T	ENST00000556143.1	-	3	1428	c.708G>A	c.(706-708)acG>acA	p.T236T	ZFYVE1_ENST00000318876.5_Silent_p.T236T|ZFYVE1_ENST00000553891.1_Silent_p.T236T	NM_021260.2	NP_067083.1	Q9HBF4	ZFYV1_HUMAN	zinc finger, FYVE domain containing 1	236						endoplasmic reticulum|Golgi stack|perinuclear region of cytoplasm	1-phosphatidylinositol binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|zinc ion binding			breast(2)|central_nervous_system(1)|endometrium(3)|kidney(2)|large_intestine(6)|lung(17)|ovary(1)|prostate(2)|skin(1)	35		all_lung(585;1.33e-09)		OV - Ovarian serous cystadenocarcinoma(108;1.6e-46)|BRCA - Breast invasive adenocarcinoma(234;0.00349)		GGAGCCCTTCCGTATCGATCA	0.552000													4	72					0	0	1	0	0
RBBP8NL	140893	broad.mit.edu	37	20	60987715	60987715	+	Missense_Mutation	SNP	C	C	T	rs138112542	byFrequency	TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr20:60987715C>T	ENST00000252998.1	-	13	1997	c.1841G>A	c.(1840-1842)cGg>cAg	p.R614Q		NM_080833.2	NP_543023.2			RBBP8 N-terminal like																		CTTCCTCTTCCGTGGTGGACC	0.706000													18	153					0	0	1	0	0
SFXN1	94081	broad.mit.edu	37	5	174939195	174939195	+	Nonsense_Mutation	SNP	C	C	T			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr5:174939195C>T	ENST00000321442.5	+	6	846	c.592C>T	c.(592-594)Caa>Taa	p.Q198*		NM_022754.5	NP_073591.2	Q9H9B4	SFXN1_HUMAN	sideroflexin 1	198					iron ion homeostasis	integral to membrane	cation transmembrane transporter activity|protein binding			endometrium(1)|large_intestine(3)|lung(7)|ovary(1)|skin(3)	15	all_cancers(89;0.00922)|Renal(175;0.000269)|Lung NSC(126;0.00515)|all_lung(126;0.00873)	Medulloblastoma(196;0.0399)|all_neural(177;0.0663)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)			ATTAATGAGGCAAAGGTAAGA	0.393000													6	51					0	0	1	0	0
CCDC87	55231	broad.mit.edu	37	11	66360426	66360426	+	Missense_Mutation	SNP	G	G	T			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr11:66360426G>T	ENST00000333861.3	-	1	128	c.61C>A	c.(61-63)Ccg>Acg	p.P21T	CCS_ENST00000533244.1_5'UTR	NM_018219.2	NP_060689.2	Q9NVE4	CCD87_HUMAN	coiled-coil domain containing 87	21										central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(4)|lung(12)|ovary(3)|prostate(2)|skin(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	28						AGCGACAGCGGACGCAGCAGC	0.672000											OREG0021111	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	39					1.58986e-06	1.72811e-06	1	1	0
RP11-417J8.2	0	broad.mit.edu	37	1	142575240	142575240	+	RNA	DEL	G	G	-			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr1:142575240delG	ENST00000415979.2	-	0	215																											acacacaGACGGTGTTGTCAG	0.373													4	2	---	---	---	---					
RP11-423O2.5	0	broad.mit.edu	37	1	142807374	142807376	+	RNA	DEL	AAA	AAA	-			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr1:142807374_142807376delAAA	ENST00000423385.1	-	0	88																											ccctgtctctaaaaaaaaaaaaa	0.468													2	4	---	---	---	---					
LOC645166	645166	broad.mit.edu	37	1	148948176	148948177	+	RNA	DEL	GA	GA	-	rs71805475		TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr1:148948176_148948177delGA	ENST00000539543.1	+	0	254					NR_027355.1																						agaggaagaggagagagagaga	0.411													3	6	---	---	---	---					
LOC101927787	101927787	broad.mit.edu	37	1	234798912	234798913	+	RNA	INS	-	-	CTCA			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr1:234798912_234798913insCTCA	ENST00000441360.1	+	0	98																											cattcactcacctcactcacct	0.535													2	4	---	---	---	---					
LOC339529	339529	broad.mit.edu	37	1	244197196	244197196	+	RNA	DEL	A	A	-			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr1:244197196delA	ENST00000440494.1	+	0	1053					NR_033883.1																						agaaagggtcaaaaggcatat	0.428													2	4	---	---	---	---					
LINC01248	102723818	broad.mit.edu	37	2	5828966	5828967	+	RNA	INS	-	-	TGTG	rs5829020	by1000genomes	TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr2:5828966_5828967insTGTG	ENST00000453678.1	-	0	144				AC108025.2_ENST00000420221.1_RNA|AC107057.2_ENST00000458264.1_RNA																							CACTGGTTCATtgtgtgtgtgt	0.376													3	5	---	---	---	---					
LOC101929418	101929418	broad.mit.edu	37	2	30280085	30280085	+	RNA	DEL	T	T	-			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr2:30280085delT	ENST00000453606.1	-	0	109																											CAAATGCCTGTGAGGAAGAGC	0.517													4	2	---	---	---	---					
AC140481.4	0	broad.mit.edu	37	2	131342032	131342033	+	RNA	INS	-	-	A			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr2:131342032_131342033insA	ENST00000457169.1	-	0	130																											ctccatctcagaaaaaaaaaaa	0.510													2	4	---	---	---	---					
LOC101927795	101927795	broad.mit.edu	37	2	201671924	201671924	+	RNA	DEL	A	A	-			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr2:201671924delA	ENST00000447972.3	-	0	386																											actccgtctcaaaaaaaaaaa	0.453													2	4	---	---	---	---					
AC007563.5	0	broad.mit.edu	37	2	217650442	217650443	+	RNA	INS	-	-	T			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr2:217650442_217650443insT	ENST00000447289.1	+	0	510																											gcccggcTCACTTTTTTTTTTT	0.436													6	2	---	---	---	---					
LINC01322	103695433	broad.mit.edu	37	3	165373075	165373075	+	RNA	DEL	C	C	-			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr3:165373075delC	ENST00000496693.1	+	0	939																											gtgggtgcagcccacagaggg	0.552													7	5	---	---	---	---					
CTC-347C20.1	0	broad.mit.edu	37	5	72013227	72013227	+	RNA	DEL	T	T	-			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr5:72013227delT	ENST00000513767.3	-	0	51																											agtgctaggattacaagcgtg	0.557													2	4	---	---	---	---					
TMEM161B-AS1	100505894	broad.mit.edu	37	5	87693430	87693431	+	RNA	INS	-	-	CACA	rs10684503		TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr5:87693430_87693431insCACA	ENST00000501715.2	+	0	577				TMEM161B-AS1_ENST00000504922.1_RNA|TMEM161B-AS1_ENST00000508015.1_RNA|TMEM161B-AS1_ENST00000501869.2_RNA|TMEM161B-AS1_ENST00000510087.1_RNA																							AACCTCAGAGTcacacacacac	0.540													3	3	---	---	---	---					
LOC102467212	102467212	broad.mit.edu	37	5	102871648	102871649	+	RNA	INS	-	-	T			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr5:102871648_102871649insT	ENST00000503367.1	-	0	221																											tcttgcatcactttttttttct	0.416													2	4	---	---	---	---					
HCP5	10866	broad.mit.edu	37	6	31387703	31387704	+	RNA	INS	-	-	G	rs76676841	by1000genomes	TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr6:31387703_31387704insG	ENST00000414046.2	+	0	62					NR_040662.1		Q6MZN7	HCP5_HUMAN							defense response					urinary_tract(1)	1						tgggaatagcagggacatagtt	0.416													6	2	---	---	---	---					
ARID1B	57492	broad.mit.edu	37	6	157099982	157099984	+	In_Frame_Del	DEL	GGC	GGC	-			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr6:157099982_157099984delGGC	ENST00000346085.5	+	1	920_922	c.919_921delGGC	c.(919-921)del	p.G319del	ARID1B_ENST00000367148.1_In_Frame_Del_p.G319del|ARID1B_ENST00000350026.5_In_Frame_Del_p.G319del|ARID1B_ENST00000275248.4_In_Frame_Del_p.G261del	NM_020732.3	NP_065783.3	Q8NFD5	ARI1B_HUMAN	AT rich interactive domain 1B (SWI1-like)	319	Gly-rich.				chromatin-mediated maintenance of transcription|nervous system development|transcription, DNA-dependent	SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			NS(2)|breast(5)|central_nervous_system(4)|endometrium(12)|kidney(4)|large_intestine(11)|lung(30)|ovary(3)|pancreas(1)|prostate(4)|skin(2)|urinary_tract(3)	81		Breast(66;0.000162)|Ovarian(120;0.0265)		OV - Ovarian serous cystadenocarcinoma(65;3.19e-17)|BRCA - Breast invasive adenocarcinoma(81;1.01e-05)		GCCcggcgcgggcggcggcggcg	0.744													2	4	---	---	---	---					
AC004895.4	0	broad.mit.edu	37	7	6129168	6129168	+	RNA	DEL	T	T	-			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr7:6129168delT	ENST00000435547.1	+	0	523																											TGACtttctcttttttttttt	0.478													3	3	---	---	---	---					
TYW1B	441250	broad.mit.edu	37	7	72086285	72086285	+	RNA	DEL	T	T	-	rs79660505		TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr7:72086285delT	ENST00000438125.1	-	0	1231							Q6NUM6	TYW1B_HUMAN	tRNA-yW synthesizing protein 1 homolog B (S. cerevisiae)						tRNA processing		4 iron, 4 sulfur cluster binding|FMN binding|iron ion binding|oxidoreductase activity										tcataaatGATTTTTTTTTCC	0.453													2	4	---	---	---	---					
ARMC10	83787	broad.mit.edu	37	7	102733074	102733077	+	Frame_Shift_Del	DEL	TTAC	TTAC	-			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr7:102733074_102733077delTTAC	ENST00000323716.3	+	5	1071_1074	c.679_682delTTAC	c.(679-684)ttfs	p.LL227fs	ARMC10_ENST00000425331.1_Frame_Shift_Del_p.LL192fs|ARMC10_ENST00000541300.1_Intron|ARMC10_ENST00000454559.1_Intron|ARMC10_ENST00000441711.2_Frame_Shift_Del_p.LL192fs|ARMC10_ENST00000428183.2_Intron	NM_031905.4	NP_114111.2	Q8N2F6	ARM10_HUMAN	armadillo repeat containing 10	227					regulation of growth	endoplasmic reticulum membrane|integral to membrane	binding			NS(1)|breast(1)|central_nervous_system(1)|large_intestine(2)|lung(3)|ovary(1)|prostate(1)|urinary_tract(1)	11						GTTCCAGGTGTTACTTACTGGAAA	0.422													8	76	---	---	---	---					
AC009784.3	0	broad.mit.edu	37	7	135877327	135877328	+	RNA	DEL	TG	TG	-	rs28521774		TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr7:135877327_135877328delTG	ENST00000445293.2	+	0	392																											tttttttttttggaaacagggt	0.520													3	3	---	---	---	---					
OR2A1-AS1	101928492	broad.mit.edu	37	7	144051238	144051238	+	RNA	DEL	A	A	-	rs71206340		TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr7:144051238delA	ENST00000463561.1	-	0	192				RP4-798C17.6_ENST00000489488.1_RNA|RP4-798C17.6_ENST00000478806.1_RNA|RP4-798C17.6_ENST00000470435.1_RNA|RP4-798C17.6_ENST00000468575.1_RNA|RP4-798C17.6_ENST00000478925.1_RNA|RP4-798C17.6_ENST00000462305.1_RNA|RP4-798C17.6_ENST00000475089.1_RNA|RP4-798C17.6_ENST00000488041.1_RNA|RP4-798C17.6_ENST00000487102.1_RNA|RP4-798C17.6_ENST00000476560.1_RNA|RP4-798C17.6_ENST00000486094.1_RNA|RP4-798C17.6_ENST00000496968.1_RNA																							CAAGACTAACAGAACACAACG	0.428													3	3	---	---	---	---					
C7orf13	129790	broad.mit.edu	37	7	156294181	156294182	+	RNA	INS	-	-	A			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr7:156294181_156294182insA	ENST00000447933.1	-	0	300																											aaatttgtaagaaaaaaaaaac	0.337													2	4	---	---	---	---					
XPA	7507	broad.mit.edu	37	9	100455962	100455964	+	In_Frame_Del	DEL	TTC	TTC	-	rs3176652		TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr9:100455962_100455964delTTC	ENST00000375128.4	-	2	314_316	c.250_252delGAA	c.(250-252)del	p.E84del		NM_000380.3	NP_000371.1	P23025	XPA_HUMAN	xeroderma pigmentosum, complementation group A	84	Interaction with CEP164 and required for UV resistance.|Poly-Glu.				nucleotide-excision repair, DNA damage removal	nucleoplasm	damaged DNA binding|metal ion binding|nucleotide binding|protein domain specific binding|protein homodimerization activity	p.E84*(1)		breast(1)|endometrium(4)|large_intestine(1)|lung(4)|prostate(1)	11		Acute lymphoblastic leukemia(62;0.158)				CAATTTTCTGTTCTTCTTCTTCT	0.340			"""Mis, N, F, S"""			"""skin basal cell, skin squamous cell, melanoma"""		Nucleotide excision repair (NER)	Xeroderma Pigmentosum				8	117	---	---	---	---					
NFKB2	4791	broad.mit.edu	37	10	104159413	104159414	+	Frame_Shift_Del	DEL	CG	CG	-			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr10:104159413_104159414delCG	ENST00000369966.3	+	14	1657_1658	c.1407_1408delCG	c.(1405-1410)gacgfs	p.DA469fs	NFKB2_ENST00000189444.6_Frame_Shift_Del_p.DA469fs|NFKB2_ENST00000428099.1_Frame_Shift_Del_p.DA469fs|NFKB2_ENST00000336486.5_3'UTR	NM_001077494.2	NP_001070962.1	Q00653	NFKB2_HUMAN	nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100)	469					innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	Bcl3/NF-kappaB2 complex|cytosol|nucleoplasm	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			NS(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(3)|lung(10)|skin(2)	23		Colorectal(252;0.00957)		Epithelial(162;3.4e-08)|all cancers(201;6.41e-07)		TCACCGCGGACGCGCGCGCGCT	0.728			T	IGH@	B-NHL								2	4	---	---	---	---					
RP11-51B23.3	0	broad.mit.edu	37	11	12561032	12561032	+	RNA	DEL	C	C	-			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr11:12561032delC	ENST00000526112.1	-	0	57																											TCCAGGTGCTCCAGGTAGATA	0.522													2	4	---	---	---	---					
TEAD1	7003	broad.mit.edu	37	11	12923661	12923664	+	Splice_Site	DEL	GTGA	GTGA	-			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr11:12923661_12923664delGTGA	ENST00000361905.4	+	10	1493		c.e10+1		TEAD1_ENST00000334310.6_Intron|TEAD1_ENST00000527575.1_Intron|TEAD1_ENST00000526600.1_Splice_Site|TEAD1_ENST00000527636.1_Splice_Site|TEAD1_ENST00000361985.2_Splice_Site	NM_021961.5	NP_068780.2	P28347	TEAD1_HUMAN	TEA domain family member 1 (SV40 transcriptional enhancer factor)						hippo signaling cascade		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			breast(2)|central_nervous_system(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(2)|lung(9)	17				Epithelial(150;0.00223)|BRCA - Breast invasive adenocarcinoma(625;0.236)		AAAATTCTGGGTGAGTAAGACATT	0.426													11	246	---	---	---	---					
RP11-655M14.13	0	broad.mit.edu	37	11	67390013	67390013	+	RNA	DEL	C	C	-			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr11:67390013delC	ENST00000533311.1	-	0	258																											ggtcagcaagccatccccagt	0.468													2	4	---	---	---	---					
LOC283177	283177	broad.mit.edu	37	11	134341898	134341899	+	RNA	INS	-	-	GT	rs74429476	by1000genomes	TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr11:134341898_134341899insGT	ENST00000528482.2	+	0	1554																											CTACAGTCCCGGTCTCAGCGCC	0.569													2	4	---	---	---	---					
RP11-167N24.4	0	broad.mit.edu	37	12	95787935	95787935	+	RNA	DEL	T	T	-	rs74780337		TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr12:95787935delT	ENST00000548194.1	-	0	150																											cctggctttcttttttttttg	0.562													2	4	---	---	---	---					
GOLGA2P5	55592	broad.mit.edu	37	12	100562920	100562921	+	RNA	INS	-	-	T	rs58822438		TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr12:100562920_100562921insT	ENST00000397112.4	-	0	599					NR_036632.1															large_intestine(1)|lung(3)	4						GGTCTCATTTGTTTTttttttt	0.406													3	3	---	---	---	---					
IRF2BPL	64207	broad.mit.edu	37	14	77493762	77493767	+	In_Frame_Del	DEL	TGCTGC	TGCTGC	-			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr14:77493762_77493767delTGCTGC	ENST00000238647.3	-	1	1267_1272	c.369_374delGCAGCA	c.(367-375)caa>ca	p.QQQ123del		NM_024496.3	NP_078772.1	Q9H1B7	I2BPL_HUMAN	interferon regulatory factor 2 binding protein-like	123	Poly-Gln.					nucleus				endometrium(2)|kidney(1)|lung(3)|ovary(1)|prostate(1)|skin(1)|urinary_tract(2)	11						GAgctgttgttgctgctgctgctgct	0.714													3	4	---	---	---	---					
AC124997.1	0	broad.mit.edu	37	15	25817645	25817645	+	RNA	DEL	G	G	-			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr15:25817645delG	ENST00000422117.1	-	0	167																											ctcacattatggggggtaatc	0.468													2	4	---	---	---	---					
DPH6-AS1	100507466	broad.mit.edu	37	15	35962931	35962932	+	RNA	DEL	TG	TG	-			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr15:35962931_35962932delTG	ENST00000501169.2	+	0	279					NR_038251.1																						tgcatgtgtatgtgtgtgtgtg	0.485													2	4	---	---	---	---					
PKD1	5310	broad.mit.edu	37	16	2139941	2139942	+	Frame_Shift_Del	DEL	TG	TG	-			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr16:2139941_2139942delTG	ENST00000262304.4	-	46	12906_12907	c.12698_12699delCA	c.(12697-12699)afs	p.T4233fs	PKD1_ENST00000423118.1_Frame_Shift_Del_p.T4232fs	NM_001009944.2	NP_001009944.2	P98161	PKD1_HUMAN	polycystic kidney disease 1 (autosomal dominant)	4233					calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			breast(1)|central_nervous_system(3)|cervix(1)|endometrium(7)|kidney(6)|lung(34)|prostate(4)|skin(10)|upper_aerodigestive_tract(3)|urinary_tract(3)	72						AGACGTCCTCTGTGGCCTGGTT	0.698													8	27	---	---	---	---					
RP11-420N3.2	0	broad.mit.edu	37	16	5856367	5856367	+	RNA	DEL	A	A	-			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr16:5856367delA	ENST00000569895.1	+	0	403																											ggatggggccaaaaagggtaa	0.527													2	4	---	---	---	---					
CTD-3037G24.3	0	broad.mit.edu	37	16	12681783	12681784	+	RNA	DEL	GG	GG	-			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr16:12681783_12681784delGG	ENST00000564505.1	-	0	307																											CCTTTTTTCTGGGGGGTGATAG	0.480													2	4	---	---	---	---					
RP11-481J2.2	0	broad.mit.edu	37	16	58460866	58460866	+	RNA	DEL	A	A	-	rs35224150		TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr16:58460866delA	ENST00000567448.1	+	0	25																											accgtttctcaaaaaaaaaaa	0.478													3	3	---	---	---	---					
CCDC144NL-AS1	440416	broad.mit.edu	37	17	20871340	20871341	+	RNA	DEL	TG	TG	-	rs79118323		TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr17:20871340_20871341delTG	ENST00000582583.1	+	0	799				RP11-344E13.3_ENST00000439794.2_RNA|RP11-344E13.3_ENST00000580056.1_RNA|RP11-344E13.3_ENST00000583481.1_RNA|RP11-381P6.1_ENST00000581673.1_RNA|RP11-344E13.3_ENST00000581958.1_RNA|RP11-344E13.3_ENST00000423473.2_RNA																							AGCACTGTACtgtgtgtgtgtg	0.426													2	4	---	---	---	---					
GIT1	28964	broad.mit.edu	37	17	27902455	27902456	+	Frame_Shift_Del	DEL	TT	TT	-			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr17:27902455_27902456delTT	ENST00000225394.3	-	18	2107_2108	c.1859_1860delAA	c.(1858-1860)afs	p.K620fs	GIT1_ENST00000579937.1_Frame_Shift_Del_p.K620fs|GIT1_ENST00000581348.1_Frame_Shift_Del_p.K606fs|RP11-68I3.2_ENST00000581474.1_RNA|GIT1_ENST00000394869.3_Frame_Shift_Del_p.K629fs	NM_014030.3	NP_054749.2	Q9Y2X7	GIT1_HUMAN	G protein-coupled receptor kinase interacting ArfGAP 1	620					regulation of ARF GTPase activity|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|focal adhesion	ARF GTPase activator activity|protein binding|zinc ion binding			large_intestine(2)|lung(3)|ovary(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	9				READ - Rectum adenocarcinoma(3;0.0419)|Colorectal(3;0.069)		AGTCTTCCTCTTTGCCCAGCTC	0.530													8	201	---	---	---	---					
AC004231.2	0	broad.mit.edu	37	17	39130974	39130975	+	RNA	INS	-	-	TC			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr17:39130974_39130975insTC	ENST00000418393.1	+	0	385																											ctttctttctttctctctctct	0.436													2	4	---	---	---	---					
RP11-527L4.5	0	broad.mit.edu	37	17	41993487	41993487	+	RNA	DEL	G	G	-			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr17:41993487delG	ENST00000585329.1	-	0	387				RP11-527L4.5_ENST00000591374.1_RNA																							AAAAACTTGAGGCCTGCAGCC	0.552													2	4	---	---	---	---					
LOC101927274	101927274	broad.mit.edu	37	17	49405144	49405144	+	RNA	DEL	T	T	-			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr17:49405144delT	ENST00000514726.1	-	0	1356																											ctgaaaaccatggcacaagaa	0.368													2	4	---	---	---	---					
MIR3976HG	645355	broad.mit.edu	37	18	5787083	5787083	+	RNA	DEL	A	A	-			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr18:5787083delA	ENST00000566533.1	+	0	426					NR_038839.1																						actccgtctcaaaaaaaaaaa	0.448													2	4	---	---	---	---					
PSMG2	56984	broad.mit.edu	37	18	12659358	12659358	+	RNA	DEL	A	A	-			TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr18:12659358delA	ENST00000585331.1	+	0	64																											CAACAGGACGAAAAGGAAAAT	0.458													2	4	---	---	---	---					
AC011523.2	0	broad.mit.edu	37	19	51342854	51342866	+	RNA	DEL	GTCCTGGACTCCT	GTCCTGGACTCCT	-	rs75420316	by1000genomes	TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr19:51342854_51342866delGTCCTGGACTCCT	ENST00000598079.1	+	0	213																											aggggctggggtcctggactcctgggtctgaag	0.648													2	4	---	---	---	---					
BAGE2	85319	broad.mit.edu	37	21	11030943	11030944	+	RNA	DEL	TA	TA	-	rs59950800	by1000genomes	TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr21:11030943_11030944delTA	ENST00000470054.1	-	0	1476									B melanoma antigen family, member 2															Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		agcaaacacttaattttttccc	0.411													3	5	---	---	---	---					
BAGE2	85319	broad.mit.edu	37	21	11032070	11032071	+	RNA	INS	-	-	T	rs7277399	by1000genomes	TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr21:11032070_11032071insT	ENST00000470054.1	-	0	1476									B melanoma antigen family, member 2															Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		ttctttctttctttattttttg	0.455													2	4	---	---	---	---					
BAGE2	85319	broad.mit.edu	37	21	11037608	11037609	+	RNA	INS	-	-	GA	rs56247503		TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr21:11037608_11037609insGA	ENST00000470054.1	-	0	1476									B melanoma antigen family, member 2															Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TAACTGTCAAGGAAAATACTTA	0.332													3	6	---	---	---	---					
BAGE2	85319	broad.mit.edu	37	21	11059172	11059175	+	RNA	DEL	CTAT	CTAT	-	rs56885467		TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr21:11059172_11059175delCTAT	ENST00000470054.1	-	0	324									B melanoma antigen family, member 2															Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TGGGAAATGACTATCTAACATAAA	0.373													5	10	---	---	---	---					
BAGE2	85319	broad.mit.edu	37	21	11063807	11063807	+	RNA	DEL	A	A	-	rs150234027		TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr21:11063807delA	ENST00000470054.1	-	0	324									B melanoma antigen family, member 2															Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		tattcagaggaaaaaaatata	0.284													3	3	---	---	---	---					
BAGE2	85319	broad.mit.edu	37	21	11063836	11063836	+	RNA	DEL	T	T	-	rs139029133		TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr21:11063836delT	ENST00000470054.1	-	0	324									B melanoma antigen family, member 2															Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		catgcaaaactgtaagactaa	0.294													3	6	---	---	---	---					
BAGE2	85319	broad.mit.edu	37	21	11073982	11073982	+	RNA	DEL	T	T	-	rs58848388		TCGA-EB-A6L9-06A-11D-A32N-08	TCGA-EB-A6L9-10A-01D-A32N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f2998c05-73d7-499e-8679-8b48b9f4dc83	4f9351b9-b3ff-403a-a2bb-8e5689738b99	g.chr21:11073982delT	ENST00000470054.1	-	0	324									B melanoma antigen family, member 2															Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		aaataactgcttttttcatgg	0.274													4	8	---	---	---	---					
