Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
TXNRD1	7296	broad.mit.edu	37	12	104712772	104712772	+	Missense_Mutation	SNP	G	G	A			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr12:104712772G>A	ENST00000526691.1	+	6	974	c.518G>A	c.(517-519)cGg>cAg	p.R173Q	TXNRD1_ENST00000378070.4_Missense_Mutation_p.R220Q|TXNRD1_ENST00000354940.6_Missense_Mutation_p.R121Q|TXNRD1_ENST00000540716.1_Missense_Mutation_p.R83Q|TXNRD1_ENST00000529546.1_Missense_Mutation_p.R83Q|TXNRD1_ENST00000526950.1_Missense_Mutation_p.R190Q|TXNRD1_ENST00000526390.1_Missense_Mutation_p.R165Q|TXNRD1_ENST00000525566.1_Missense_Mutation_p.R271Q|TXNRD1_ENST00000524698.1_Missense_Mutation_p.R121Q|TXNRD1_ENST00000503506.2_Missense_Mutation_p.R121Q|TXNRD1_ENST00000429002.2_Missense_Mutation_p.R271Q|TXNRD1_ENST00000427956.1_Missense_Mutation_p.R236Q|TXNRD1_ENST00000397736.2_Missense_Mutation_p.R165Q|TXNRD1_ENST00000542918.1_Missense_Mutation_p.R171Q|TXNRD1_ENST00000388854.3_Missense_Mutation_p.R173Q	NM_001261445.1|NM_003330.3	NP_001248374.1|NP_003321.3	Q16881	TRXR1_HUMAN	thioredoxin reductase 1	271					cell redox homeostasis|cellular lipid metabolic process|electron transport chain|nucleobase, nucleoside and nucleotide interconversion|signal transduction|transport	cytosol|nucleolus	electron carrier activity|flavin adenine dinucleotide binding|NADP binding|protein disulfide oxidoreductase activity|thioredoxin-disulfide reductase activity			cervix(1)|endometrium(3)|kidney(2)|large_intestine(2)|lung(5)|skin(1)|stomach(1)|urinary_tract(1)	16						GTAGCTCTGCGGGAGAAAAAA	0.383000													7	64					0	0	0.000157383	0	0
GALNT15	117248	broad.mit.edu	37	3	16237310	16237310	+	Missense_Mutation	SNP	G	G	A			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr3:16237310G>A	ENST00000339732.5	+	2	1086	c.583G>A	c.(583-585)Gtc>Atc	p.V195I	GALNT15_ENST00000437509.1_Missense_Mutation_p.V195I	NM_054110.4	NP_473451.3			UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 15																		CACAGCCAGCGTCATCCTCTG	0.587000													5	51					0	0	1.23904e-05	0	0
LPIN2	9663	broad.mit.edu	37	18	2960762	2960762	+	Missense_Mutation	SNP	G	G	C			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr18:2960762G>C	ENST00000261596.4	-	2	315	c.77C>G	c.(76-78)aCc>aGc	p.T26S		NM_014646.2	NP_055461.1	Q92539	LPIN2_HUMAN	lipin 2	26	N-LIP.				fatty acid metabolic process|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent|triglyceride biosynthetic process	cytosol|endoplasmic reticulum membrane|nucleus	phosphatidate phosphatase activity|transcription coactivator activity			autonomic_ganglia(1)|breast(1)|endometrium(2)|large_intestine(4)|lung(16)|ovary(1)|pancreas(1)|prostate(2)|skin(1)	29				READ - Rectum adenocarcinoma(2;0.0419)|Colorectal(6;0.156)		CCCAGAGAGGGTGGCCTGGTT	0.493000													8	41					0	0	3.86212e-05	0	0
TLL1	7092	broad.mit.edu	37	4	166981216	166981216	+	Missense_Mutation	SNP	C	C	T			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr4:166981216C>T	ENST00000061240.2	+	15	2530	c.1883C>T	c.(1882-1884)aCc>aTc	p.T628I	TLL1_ENST00000507499.1_Missense_Mutation_p.T651I	NM_012464.4	NP_036596.3	O43897	TLL1_HUMAN	tolloid-like 1	628	CUB 3.				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			NS(1)|breast(1)|central_nervous_system(1)|endometrium(7)|kidney(4)|large_intestine(21)|lung(26)|ovary(2)|prostate(5)|skin(6)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	77	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		CTTAACGGCACCATAACCACC	0.463000													6	45					0	0	3.59834e-05	0	0
STRIP1	85369	broad.mit.edu	37	1	110584240	110584240	+	Missense_Mutation	SNP	C	C	T			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr1:110584240C>T	ENST00000369795.3	+	7	755	c.733C>T	c.(733-735)Cgg>Tgg	p.R245W	STRIP1_ENST00000369796.1_Missense_Mutation_p.R150W	NM_033088.2	NP_149079.2			striatin interacting protein 1																		GAGGACCATGCGGCAGACCTT	0.592000													7	65					0	0	0.000274275	0	0
ZNF804B	219578	broad.mit.edu	37	7	88964944	88964944	+	Missense_Mutation	SNP	T	T	C			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr7:88964944T>C	ENST00000333190.4	+	4	3257	c.2648T>C	c.(2647-2649)cTg>cCg	p.L883P		NM_181646.2	NP_857597.1	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	883						intracellular	zinc ion binding			NS(1)|breast(2)|endometrium(5)|kidney(5)|large_intestine(20)|lung(78)|ovary(5)|pancreas(5)|prostate(2)|skin(11)|soft_tissue(1)|upper_aerodigestive_tract(9)	144	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			ATTTGTGATCTGGGAAAAGTC	0.433000										HNSCC(36;0.09)			7	44					0	0	8.12818e-05	0	0
DSG3	1830	broad.mit.edu	37	18	29041337	29041337	+	Missense_Mutation	SNP	G	G	A			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr18:29041337G>A	ENST00000257189.4	+	8	1044	c.961G>A	c.(961-963)Gat>Aat	p.D321N		NM_001944.2	NP_001935.2	P32926	DSG3_HUMAN	desmoglein 3	321	Cadherin 3.				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			breast(1)|central_nervous_system(2)|cervix(3)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(10)|lung(28)|ovary(4)|prostate(1)|skin(8)|upper_aerodigestive_tract(1)	62			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			AATACAAACTGATCCTAGAAC	0.343000													8	52					0	0	3.86212e-05	0	0
GORASP1	64689	broad.mit.edu	37	3	39144332	39144332	+	Missense_Mutation	SNP	T	T	C			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr3:39144332T>C	ENST00000319283.3	-	3	1006	c.185A>G	c.(184-186)aAt>aGt	p.N62S	GORASP1_ENST00000479927.1_Intron|GORASP1_ENST00000422110.2_Intron	NM_031899.2	NP_114105.1	Q9BQQ3	GORS1_HUMAN	golgi reassembly stacking protein 1, 65kDa	62	PDZ.				mitotic prophase|protein transport	cytosol|Golgi apparatus|membrane				central_nervous_system(1)|endometrium(2)|large_intestine(6)|lung(1)|ovary(3)|urinary_tract(1)	14				KIRC - Kidney renal clear cell carcinoma(284;0.0519)|Kidney(284;0.0653)		CTTCTCCACATTGGCTTTCAG	0.592000													14	141					0	0	3.45872e-05	0	0
IGSF9	57549	broad.mit.edu	37	1	159900501	159900501	+	Silent	SNP	G	G	A			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr1:159900501G>A	ENST00000368094.1	-	14	1991	c.1794C>T	c.(1792-1794)atC>atT	p.I598I	IGSF9_ENST00000493195.1_5'UTR|IGSF9_ENST00000361509.3_Silent_p.I582I	NM_001135050.1	NP_001128522.1	Q9P2J2	TUTLA_HUMAN	immunoglobulin superfamily, member 9	598	Fibronectin type-III 1.					cell junction|integral to membrane|synapse		p.I582I(1)		central_nervous_system(2)|endometrium(8)|kidney(3)|large_intestine(13)|lung(17)|ovary(3)|prostate(4)|skin(3)|upper_aerodigestive_tract(2)|urinary_tract(1)	56	all_hematologic(112;0.0597)	Breast(1374;0.000126)	BRCA - Breast invasive adenocarcinoma(70;0.111)			CAGACAAGACGATTTCGCTGA	0.607000													7	53					0	0	8.12818e-05	0	0
OR5T3	390154	broad.mit.edu	37	11	56020308	56020308	+	Missense_Mutation	SNP	G	G	C			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr11:56020308G>C	ENST00000303059.3	+	1	633	c.633G>C	c.(631-633)atG>atC	p.M211I		NM_001004747.1	NP_001004747.1	Q8NGG3	OR5T3_HUMAN	olfactory receptor, family 5, subfamily T, member 3	211					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(2)|cervix(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(3)|lung(23)|prostate(2)|skin(2)|upper_aerodigestive_tract(3)	39	Esophageal squamous(21;0.00448)					TTTGTGATATGCCTCCTCTCC	0.413000													23	190					0	0	4.16121e-05	0	0
NUP62	23636	broad.mit.edu	37	19	50412893	50412893	+	Missense_Mutation	SNP	C	C	A			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr19:50412893C>A	ENST00000596217.1	-	2	2059	c.172G>T	c.(172-174)Ggc>Tgc	p.G58C	NUP62_ENST00000597723.1_Missense_Mutation_p.G58C|CTC-326K19.6_ENST00000451973.1_3'UTR|NUP62_ENST00000597029.1_Missense_Mutation_p.G58C|NUP62_ENST00000352066.3_Missense_Mutation_p.G58C|IL4I1_ENST00000595948.1_Intron|NUP62_ENST00000422090.2_Missense_Mutation_p.G58C|IL4I1_ENST00000341114.3_Intron|NUP62_ENST00000413454.1_Missense_Mutation_p.G58C			P37198	NUP62_HUMAN	nucleoporin 62kDa	58	15 X 9 AA approximate repeats.|Thr-rich.				carbohydrate metabolic process|cell death|cell surface receptor linked signaling pathway|glucose transport|hormone-mediated signaling pathway|mRNA transport|negative regulation of apoptosis|negative regulation of cell proliferation|nucleocytoplasmic transport|positive regulation of epidermal growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription, DNA-dependent|protein transport|regulation of glucose transport|transcription, DNA-dependent|transmembrane transport|viral reproduction	cytoplasm|nuclear membrane|nuclear pore|nucleocytoplasmic shuttling complex|ribonucleoprotein complex|spindle pole	chromatin binding|protein serine/threonine kinase activity|receptor signaling complex scaffold activity|SH2 domain binding|structural constituent of nuclear pore|thyroid hormone receptor binding|ubiquitin binding			breast(2)|endometrium(1)|kidney(1)|large_intestine(4)|lung(8)|stomach(1)|urinary_tract(2)	19		all_lung(116;1.47e-05)|all_neural(266;0.0459)|Ovarian(192;0.0481)		GBM - Glioblastoma multiforme(134;0.00242)|OV - Ovarian serous cystadenocarcinoma(262;0.0177)		GAGAACAGGCCGGTGGAAGGG	0.547000													17	148					1.2644e-06	8.54085e-05	0.000175454	1	0
ATP9A	10079	broad.mit.edu	37	20	50235227	50235227	+	Missense_Mutation	SNP	C	C	A			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr20:50235227C>A	ENST00000338821.5	-	21	2588	c.2324G>T	c.(2323-2325)cGc>cTc	p.R775L	ATP9A_ENST00000311637.5_Missense_Mutation_p.R639L|ATP9A_ENST00000402822.1_Missense_Mutation_p.R654L	NM_006045.1	NP_006036.1	O75110	ATP9A_HUMAN	ATPase, class II, type 9A	775					ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			breast(2)|cervix(2)|endometrium(6)|kidney(1)|large_intestine(10)|lung(18)|ovary(5)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	48						CTTGCCCGTGCGCTCCTGAAG	0.647000													6	132					2.7689e-08	1.93269e-06	8.12818e-05	1	0
SLC17A6	57084	broad.mit.edu	37	11	22391731	22391731	+	Silent	SNP	C	C	T			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr11:22391731C>T	ENST00000263160.3	+	8	1475	c.1038C>T	c.(1036-1038)agC>agT	p.S346S		NM_020346.2	NP_065079.1	Q9P2U8	VGLU2_HUMAN	solute carrier family 17 (vesicular glutamate transporter), member 6	346					sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			breast(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(2)|kidney(3)|large_intestine(3)|lung(28)|ovary(3)|skin(4)|upper_aerodigestive_tract(3)	50						TTGAAATTAGCAAGGTATGTA	0.279000													6	52					0	0	0.000274275	0	0
NONO	4841	broad.mit.edu	37	X	70514152	70514152	+	Missense_Mutation	SNP	C	C	T			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chrX:70514152C>T	ENST00000535149.1	+	3	800	c.157C>T	c.(157-159)Cgc>Tgc	p.R53C	NONO_ENST00000490044.1_3'UTR|NONO_ENST00000276079.8_Missense_Mutation_p.R142C|NONO_ENST00000373841.1_Missense_Mutation_p.R142C|NONO_ENST00000373856.3_Missense_Mutation_p.R142C	NM_001145410.1	NP_001138882.1	Q15233	NONO_HUMAN	non-POU domain containing, octamer-binding	142					DNA recombination|DNA repair|mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|transcription, DNA-dependent	nuclear matrix|paraspeckles	DNA binding|identical protein binding|nucleotide binding|RNA binding		NONO/TFE3(2)	endometrium(5)|haematopoietic_and_lymphoid_tissue(2)|kidney(3)|large_intestine(2)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	19	Renal(35;0.156)					GCTGCGTGTGCGCTTTGCCTG	0.507000			T	TFE3	papillary renal cancer								9	77					0	0	2.17888e-05	0	0
TTN	7273	broad.mit.edu	37	2	179504471	179504471	+	Missense_Mutation	SNP	G	G	A			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr2:179504471G>A	ENST00000589042.1	-	223	41055	c.40831C>T	c.(40831-40833)Ccc>Tcc	p.P13611S	TTN-AS1_ENST00000589487.1_RNA|TTN_ENST00000342175.6_Missense_Mutation_p.P4738S|TTN-AS1_ENST00000431752.1_RNA|TTN-AS1_ENST00000418062.1_RNA|TTN_ENST00000359218.5_Missense_Mutation_p.P4671S|TTN-AS1_ENST00000590807.1_RNA|TTN_ENST00000591111.1_Missense_Mutation_p.P11970S|TTN-AS1_ENST00000592630.1_RNA|TTN-AS1_ENST00000589830.1_RNA|TTN_ENST00000342992.6_Missense_Mutation_p.P11043S|TTN-AS1_ENST00000585451.1_RNA|TTN_ENST00000460472.2_Missense_Mutation_p.P4546S	NM_001267550.1	NP_001254479.1	Q8WZ42	TITIN_HUMAN	titin	11970	Ig-like 92.						ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			NS(24)|autonomic_ganglia(1)|breast(64)|central_nervous_system(14)|cervix(14)|endometrium(96)|haematopoietic_and_lymphoid_tissue(16)|kidney(91)|large_intestine(303)|liver(1)|lung(595)|ovary(58)|pancreas(17)|prostate(38)|skin(60)|stomach(29)|upper_aerodigestive_tract(1)|urinary_tract(26)	1448			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCAGCGATGGGGGTTGGTTCA	0.403000													7	40					0	0	2.17888e-05	0	0
USP54	159195	broad.mit.edu	37	10	75302825	75302825	+	Missense_Mutation	SNP	G	G	A			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr10:75302825G>A	ENST00000339859.4	-	5	540	c.440C>T	c.(439-441)gCc>gTc	p.A147V	USP54_ENST00000497106.1_5'UTR|USP54_ENST00000408019.1_Missense_Mutation_p.A147V|USP54_ENST00000319786.7_Missense_Mutation_p.A147V|USP54_ENST00000428547.1_Intron|USP54_ENST00000394811.2_5'UTR			Q70EL1	UBP54_HUMAN	ubiquitin specific peptidase 54	147					ubiquitin-dependent protein catabolic process		protein binding|ubiquitin thiolesterase activity	p.A147V(1)		breast(5)|cervix(1)|endometrium(3)|kidney(2)|large_intestine(5)|lung(12)|ovary(1)|prostate(1)	30	Prostate(51;0.0112)					GCAGTGTTGGGCAGTACATAT	0.388000													11	85					0	0	2.31682e-05	0	0
PARP14	54625	broad.mit.edu	37	3	122419866	122419866	+	Missense_Mutation	SNP	C	C	G			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr3:122419866C>G	ENST00000474629.2	+	6	2731	c.2465C>G	c.(2464-2466)gCa>gGa	p.A822G		NM_017554.2	NP_060024.2	Q460N5	PAR14_HUMAN	poly (ADP-ribose) polymerase family, member 14	822	Macro 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	NAD+ ADP-ribosyltransferase activity			NS(2)|breast(5)|cervix(2)|endometrium(7)|kidney(5)|large_intestine(8)|lung(14)|ovary(2)|pancreas(1)|prostate(2)|skin(1)|urinary_tract(1)	50				GBM - Glioblastoma multiforme(114;0.0531)		GTGGTGAATGCATCTAATGAG	0.572000													11	62					0	0	6.40141e-05	0	0
BTN3A3	10384	broad.mit.edu	37	6	26444257	26444257	+	Missense_Mutation	SNP	A	A	C			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr6:26444257A>C	ENST00000244519.2	+	4	401	c.158A>C	c.(157-159)cAc>cCc	p.H53P	BTN3A3_ENST00000361232.3_Missense_Mutation_p.H11P|BTN3A3_ENST00000339789.4_Missense_Mutation_p.H11P	NM_006994.4	NP_008925.1	O00478	BT3A3_HUMAN	butyrophilin, subfamily 3, member A3	53	Ig-like V-type 1.					integral to membrane				cervix(1)|endometrium(3)|large_intestine(4)|liver(1)|lung(15)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(4)	30						CTGCCCTGTCACCTGTTCCCG	0.567000													17	114					0	0	9.7654e-05	0	0
FAM211B	388886	broad.mit.edu	37	22	24982184	24982184	+	Silent	SNP	C	C	T			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr22:24982184C>T	ENST00000318753.8	-	4	641	c.618G>A	c.(616-618)gcG>gcA	p.A206A	GGT1_ENST00000248923.4_Intron	NM_207644.2	NP_997527.2	Q2VPJ9	LRC6X_HUMAN	family with sequence similarity 211, member B	206																	GGCGGGGCAGCGCCCACAGGC	0.657000													8	79					0	0	2.17888e-05	0	0
FXR2	9513	broad.mit.edu	37	17	7497597	7497597	+	Nonsense_Mutation	SNP	G	G	A			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr17:7497597G>A	ENST00000250113.7	-	10	1313	c.979C>T	c.(979-981)Cga>Tga	p.R327*		NM_004860.3	NP_004851.2	P51116	FXR2_HUMAN	fragile X mental retardation, autosomal homolog 2	327						cytosolic large ribosomal subunit	protein binding|RNA binding			NS(1)|breast(2)|endometrium(6)|kidney(1)|large_intestine(7)|lung(8)|prostate(1)	26				READ - Rectum adenocarcinoma(115;0.17)		CCTTCCACTCGAACCCTCACC	0.468000													6	26					0	0	0.000274275	0	0
CACNG3	10368	broad.mit.edu	37	16	24366269	24366269	+	Silent	SNP	C	C	T			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr16:24366269C>T	ENST00000005284.3	+	3	1613	c.411C>T	c.(409-411)agC>agT	p.S137S		NM_006539.3	NP_006530.1	O60359	CCG3_HUMAN	calcium channel, voltage-dependent, gamma subunit 3	137					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity			NS(2)|breast(1)|endometrium(4)|kidney(2)|large_intestine(10)|lung(13)|ovary(2)|prostate(4)|skin(2)	40				GBM - Glioblastoma multiforme(48;0.0809)		TCATTCTCAGCGCGGGCATCT	0.577000													6	38					0	0	8.12818e-05	0	0
ARHGAP17	55114	broad.mit.edu	37	16	24981829	24981829	+	Splice_Site	SNP	C	C	A			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr16:24981829C>A	ENST00000289968.6	-	4	340	c.272_splice	c.e4+1	p.G91_splice	ARHGAP17_ENST00000441763.2_Splice_Site_p.G91_splice|ARHGAP17_ENST00000575975.1_5'UTR|ARHGAP17_ENST00000303665.5_Splice_Site_p.G91_splice	NM_001006634.1	NP_001006635.1	Q68EM7	RHG17_HUMAN	Rho GTPase activating protein 17	91	BAR.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|tight junction	GTPase activator activity|SH3 domain binding			breast(2)|cervix(1)|endometrium(5)|kidney(3)|large_intestine(3)|lung(13)|ovary(1)|urinary_tract(2)	30				GBM - Glioblastoma multiforme(48;0.0407)		AACTCTTACCCCAGGAGAGAG	0.498000													6	140					8.12818e-05	0.00531888	8.12818e-05	1	0
FRY	10129	broad.mit.edu	37	13	32768296	32768296	+	Missense_Mutation	SNP	G	G	A			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr13:32768296G>A	ENST00000380250.3	+	29	4104	c.3608G>A	c.(3607-3609)tGc>tAc	p.C1203Y		NM_023037.2	NP_075463.2	Q5TBA9	FRY_HUMAN	furry homolog (Drosophila)	1203					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				NS(3)|breast(4)|cervix(2)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(9)|large_intestine(31)|lung(50)|ovary(5)|pancreas(1)|prostate(6)|skin(9)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	132		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		CAACTTGGCTGCGAAGTTGTT	0.368000													16	86					0	0	7.07596e-05	0	0
ZNF804B	219578	broad.mit.edu	37	7	88966031	88966031	+	Silent	SNP	T	T	C			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr7:88966031T>C	ENST00000333190.4	+	4	4344	c.3735T>C	c.(3733-3735)ccT>ccC	p.P1245P		NM_181646.2	NP_857597.1	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	1245						intracellular	zinc ion binding			NS(1)|breast(2)|endometrium(5)|kidney(5)|large_intestine(20)|lung(78)|ovary(5)|pancreas(5)|prostate(2)|skin(11)|soft_tissue(1)|upper_aerodigestive_tract(9)	144	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			ATTTCAGTCCTATTTCATTTT	0.473000										HNSCC(36;0.09)			23	82					0	0	5.49717e-05	0	0
ZNF275	10838	broad.mit.edu	37	X	152612596	152612596	+	Silent	SNP	C	C	T			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chrX:152612596C>T	ENST00000421401.3	+	4	630	c.453C>T	c.(451-453)caC>caT	p.H151H	ZNF275_ENST00000440091.1_Silent_p.H181H|ZNF275_ENST00000370251.2_Silent_p.H151H|ZNF275_ENST00000370249.2_Silent_p.H98H	NM_001080485.3	NP_001073954.3	A6NFS0	A6NFS0_HUMAN	zinc finger protein 275	151						intracellular	nucleic acid binding|zinc ion binding			endometrium(5)|large_intestine(4)|lung(4)|ovary(1)|prostate(1)|urinary_tract(1)	16	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GGAAAAGCCACGTAGCTGCGG	0.627000													8	35					0	0	0.000274275	0	0
VPS13B	157680	broad.mit.edu	37	8	100568870	100568870	+	Missense_Mutation	SNP	T	T	G			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr8:100568870T>G	ENST00000358544.2	+	31	5124	c.5013T>G	c.(5011-5013)aaT>aaG	p.N1671K	VPS13B_ENST00000357162.2_Missense_Mutation_p.N1646K|VPS13B_ENST00000395996.1_3'UTR	NM_017890.4	NP_060360.3	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13 homolog B (yeast)	1671					protein transport					NS(1)|autonomic_ganglia(1)|breast(6)|central_nervous_system(4)|cervix(3)|endometrium(11)|haematopoietic_and_lymphoid_tissue(4)|kidney(10)|large_intestine(37)|lung(78)|ovary(8)|pancreas(3)|prostate(5)|skin(9)|upper_aerodigestive_tract(4)|urinary_tract(9)	193	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			TTGAGTGGAATATGGCCAGCA	0.428000													23	30					0	0	7.16444e-05	0	0
CSNK1A1	1452	broad.mit.edu	37	5	148891414	148891414	+	Silent	SNP	T	T	C			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr5:148891414T>C	ENST00000261798.5	-	6	1050	c.618A>G	c.(616-618)tcA>tcG	p.S206S	CSNK1A1_ENST00000515768.1_Silent_p.S234S|CSNK1A1_ENST00000504676.1_Silent_p.S117S|CSNK1A1_ENST00000606299.1_Intron|CSNK1A1_ENST00000515435.1_Silent_p.S145S|CSNK1A1_ENST00000606719.1_Silent_p.S3S|CSNK1A1_ENST00000377843.2_Silent_p.S206S	NM_001271741.1	NP_001258670.1	P48729	KC1A_HUMAN	casein kinase 1, alpha 1	206	Protein kinase.				cell division|mitosis|Wnt receptor signaling pathway	centrosome|condensed chromosome kinetochore|cytosol|nuclear speck	ATP binding|protein binding|protein serine/threonine kinase activity			breast(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(3)|kidney(1)|large_intestine(2)|lung(4)	14			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;0.0407)		CATATCCTAATGATTCCATGT	0.338000													5	116					0	0	1.23904e-05	0	0
TMEM54	113452	broad.mit.edu	37	1	33361571	33361572	+	Splice_Site	INS	-	-	TG			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr1:33361571_33361572insTG	ENST00000373463.3	-	3	330		c.e3-1		TMEM54_ENST00000475208.1_Intron|TMEM54_ENST00000329151.5_Intron	NM_033504.2	NP_277039.1	Q969K7	TMM54_HUMAN	transmembrane protein 54							integral to membrane				endometrium(1)|kidney(2)|large_intestine(1)|lung(1)|urinary_tract(1)	6		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)				AAGTGATGACCTGTAGGGAAGG	0.609													9	29	---	---	---	---					
EIF4A2	1974	broad.mit.edu	37	3	186507006	186507007	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr3:186507006_186507007delTC	ENST00000323963.5	+	11	1236_1237	c.1172_1173delTC	c.(1171-1173)tfs	p.F391fs	EIF4A2_ENST00000440191.2_Frame_Shift_Del_p.F392fs|EIF4A2_ENST00000356531.5_Frame_Shift_Del_p.F296fs			Q14240	IF4A2_HUMAN	eukaryotic translation initiation factor 4A2	391	Helicase C-terminal.				interspecies interaction between organisms|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	ATP binding|ATP-dependent helicase activity|protein binding|translation initiation factor activity			breast(3)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(5)|lung(8)|ovary(2)|prostate(2)|urinary_tract(1)	28	all_cancers(143;2.68e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;1.07e-20)	GBM - Glioblastoma multiforme(93;0.0704)		ATTGAGACTTTCTACAATACTA	0.446			T	BCL6	NHL								23	222	---	---	---	---					
ZNF518B	85460	broad.mit.edu	37	4	10445874	10445874	+	Frame_Shift_Del	DEL	C	C	-			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr4:10445874delC	ENST00000326756.3	-	3	2517	c.2079delG	c.(2077-2079)ggfs	p.G693fs		NM_053042.2	NP_444270.2	Q9C0D4	Z518B_HUMAN	zinc finger protein 518B	693					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|cervix(1)|endometrium(4)|kidney(3)|large_intestine(7)|lung(16)|ovary(3)|skin(2)|stomach(3)|upper_aerodigestive_tract(1)	42						TTGATGCCTGCCCTACAGAGC	0.458													15	72	---	---	---	---					
POU4F2	5458	broad.mit.edu	37	4	147560457	147560458	+	In_Frame_Ins	INS	-	-	GGC	rs67907220		TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr4:147560457_147560458insGGC	ENST00000281321.3	+	1	413_414	c.165_166insGGC	c.(163-168)gggcgg>ggGGCgcgg	p.55_56GR>GAR	AC093887.1_ENST00000584185.1_RNA	NM_004575.2	NP_004566.2	Q12837	PO4F2_HUMAN	POU class 4 homeobox 2	55	Poly-Gly.				estrogen receptor signaling pathway|MAPKKK cascade|negative regulation of transcription from RNA polymerase II promoter	nuclear speck	RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription			NS(1)|breast(1)|endometrium(7)|kidney(3)|large_intestine(11)|lung(8)|skin(1)|upper_aerodigestive_tract(1)	33	all_hematologic(180;0.151)					ACGCTggtggtggcggcggcgg	0.762													5	5	---	---	---	---					
UBQLN3	50613	broad.mit.edu	37	11	5529918	5529920	+	In_Frame_Del	DEL	TGG	TGG	-	rs2234451	byFrequency	TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr11:5529918_5529920delTGG	ENST00000311659.4	-	2	1016_1018	c.869_871delCCA	c.(868-873)agc>a	p.TS290del	HBG2_ENST00000380259.2_Intron	NM_017481.2	NP_059509.1	Q9H347	UBQL3_HUMAN	ubiquilin 3	290			T -> S (in dbSNP:rs2234451).							NS(2)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(9)|lung(16)|ovary(4)|prostate(1)|skin(2)	39		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GAAGGTTGGCTGGTGGTGGTGGT	0.537													9	160	---	---	---	---					
EMG1	10436	broad.mit.edu	37	12	7080210	7080211	+	RNA	INS	-	-	G	rs141646579	by1000genomes	TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr12:7080210_7080211insG	ENST00000546220.1	+	0	155_156				U47924.19_ENST00000564245.1_RNA|U47924.28_ENST00000261406.6_lincRNA			Q92979	NEP1_HUMAN	EMG1 N1-specific pseudouridine methyltransferase						ribosomal small subunit biogenesis	cytoplasm|nucleolus	rRNA (pseudouridine) methyltransferase activity|rRNA binding										CGGAGGCCGTAGTTTATTGTGG	0.569													3	6	---	---	---	---					
RP13-329D4.3	0	broad.mit.edu	37	20	26113543	26113543	+	RNA	DEL	A	A	-			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr20:26113543delA	ENST00000416563.1	-	0	250																											TCTTTGCCTTAACAACATTAT	0.363													2	4	---	---	---	---					
