Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
SORCS1	114815	broad.mit.edu	37	10	108389146	108389146	+	Splice_Site	SNP	C	C	A			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr10:108389146C>A	ENST00000263054.6	-	19	2483	c.2475_splice	c.e19-1	p.G826_splice	SORCS1_ENST00000344440.6_Splice_Site_p.G826_splice|SORCS1_ENST00000369698.1_Splice_Site_p.G361_splice	NM_001206570.1|NM_052918.4	NP_001193499.1|NP_443150.3	Q8WY21	SORC1_HUMAN	sortilin-related VPS10 domain containing receptor 1	826	PKD.					integral to membrane	neuropeptide receptor activity|protein binding			breast(5)|central_nervous_system(1)|cervix(2)|endometrium(9)|kidney(2)|large_intestine(24)|lung(69)|ovary(1)|prostate(8)|skin(1)|stomach(1)|upper_aerodigestive_tract(3)|urinary_tract(1)	127		Breast(234;0.0256)|Colorectal(252;0.09)|Lung NSC(174;0.168)		Epithelial(162;1.66e-05)|all cancers(201;0.000689)		TGAACATCACCCTGAAAAACA	0.517000													13	11					1.49906e-05	0.000101252	0.002450	1	0
RBM33	155435	broad.mit.edu	37	7	155530778	155530778	+	Missense_Mutation	SNP	G	G	A			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr7:155530778G>A	ENST00000401878.3	+	11	1616	c.1418G>A	c.(1417-1419)aGc>aAc	p.S473N		NM_053043.2	NP_444271.2	Q96EV2	RBM33_HUMAN	RNA binding motif protein 33	473	Pro-rich.						nucleotide binding|RNA binding			breast(3)|cervix(1)|endometrium(8)|kidney(3)|large_intestine(4)|lung(6)|ovary(1)|upper_aerodigestive_tract(1)	27	all_neural(206;0.101)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.011)	UCEC - Uterine corpus endometrioid carcinoma (81;0.2)		AGATTCCCGAGCCATCTTTTT	0.468000													40	116					0	0	0.008740	0	0
CA2	760	broad.mit.edu	37	8	86386612	86386612	+	Silent	SNP	T	T	C			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr8:86386612T>C	ENST00000285379.5	+	4	641	c.411T>C	c.(409-411)ccT>ccC	p.P137P		NM_000067.2	NP_000058.1	P00918	CAH2_HUMAN	carbonic anhydrase II	137					one-carbon metabolic process	apical part of cell	carbonate dehydratase activity|zinc ion binding			central_nervous_system(2)|cervix(1)|large_intestine(2)|lung(5)|prostate(1)	11					Acetazolamide(DB00819)|Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Brinzolamide(DB01194)|Chlorothiazide(DB00880)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Dorzolamide(DB00869)|Ethinamate(DB01031)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Topiramate(DB00273)|Trichlormethiazide(DB01021)	TGCAGCAACCTGATGGACTGG	0.398000													7	252					0	0	0.006214	0	0
DPP6	1804	broad.mit.edu	37	7	154143335	154143335	+	Missense_Mutation	SNP	A	A	G			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr7:154143335A>G	ENST00000404039.1	+	2	675	c.88A>G	c.(88-90)Aaa>Gaa	p.K30E	DPP6_ENST00000377770.3_Missense_Mutation_p.K94E|DPP6_ENST00000406326.1_Missense_Mutation_p.K94E|DPP6_ENST00000427557.1_Missense_Mutation_p.K32E|DPP6_ENST00000332007.3_Missense_Mutation_p.K32E|DPP6_ENST00000496611.1_3'UTR	NM_001039350.1|NM_001936.3|NM_130797.2	NP_001034439.1|NP_001927.3|NP_570629.2	P42658	DPP6_HUMAN	dipeptidyl-peptidase 6	94					cell death|proteolysis	integral to membrane	dipeptidyl-peptidase activity|serine-type peptidase activity			NS(3)|breast(2)|endometrium(5)|haematopoietic_and_lymphoid_tissue(2)|kidney(3)|large_intestine(4)|lung(35)|pancreas(4)|prostate(5)|skin(2)|stomach(1)|upper_aerodigestive_tract(4)|urinary_tract(1)	71	all_neural(206;0.181)	all_hematologic(28;0.0044)|all_lung(21;0.0176)|Lung NSC(21;0.0204)	OV - Ovarian serous cystadenocarcinoma(82;0.0562)			GAGGAATTGGAAAGGAATAGC	0.428000													29	85					0	0	0.002836	0	0
CD300E	342510	broad.mit.edu	37	17	72613315	72613315	+	Missense_Mutation	SNP	C	C	G			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr17:72613315C>G	ENST00000392619.1	-	2	446	c.411G>C	c.(409-411)tgG>tgC	p.W137C	CD300E_ENST00000328630.3_Missense_Mutation_p.W110C|CD300E_ENST00000426295.2_Missense_Mutation_p.W151C	NM_181449.2	NP_852114.2	Q496F6	CLM2_HUMAN	CD300e molecule	110						integral to membrane|plasma membrane	receptor activity			breast(1)|kidney(3)|large_intestine(4)|lung(4)|ovary(1)|skin(4)|stomach(1)|upper_aerodigestive_tract(1)	19						AATCCAGGACCCACACTGTCT	0.547000													25	106					0	0	0.006320	0	0
CHI3L2	1117	broad.mit.edu	37	1	111773481	111773481	+	Missense_Mutation	SNP	T	T	G			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr1:111773481T>G	ENST00000445067.2	+	5	959	c.188T>G	c.(187-189)tTc>tGc	p.F63C	CHI3L2_ENST00000369744.2_Missense_Mutation_p.F53C|CHI3L2_ENST00000369748.4_Missense_Mutation_p.F63C|CHI3L2_ENST00000466741.1_5'UTR|CHI3L2_ENST00000524472.1_5'UTR			Q15782	CH3L2_HUMAN	chitinase 3-like 2	63					chitin catabolic process	extracellular space	cation binding|chitinase activity			breast(1)|central_nervous_system(1)|endometrium(2)|large_intestine(6)|lung(8)|prostate(1)	19		all_cancers(81;1.89e-05)|all_epithelial(167;7.36e-06)|all_lung(203;0.00018)|Lung NSC(277;0.000359)		Lung(183;0.0171)|Colorectal(144;0.0387)|all cancers(265;0.0464)|LUSC - Lung squamous cell carcinoma(189;0.0872)|Epithelial(280;0.0994)|COAD - Colon adenocarcinoma(174;0.141)		ATCTATTCATTCGCCAGCATC	0.463000													23	47					0	0	0.002299	0	0
DUXA	503835	broad.mit.edu	37	19	57666725	57666725	+	Nonsense_Mutation	SNP	G	G	A			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr19:57666725G>A	ENST00000554048.2	-	5	453	c.454C>T	c.(454-456)Cga>Tga	p.R152*		NM_001012729.1	NP_001012747.1	A6NLW8	DUXA_HUMAN	double homeobox A	152						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(2)|central_nervous_system(1)|endometrium(1)|large_intestine(2)|lung(9)|ovary(1)|upper_aerodigestive_tract(1)	17		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0123)		CTAGATCTTCGATTTTGGAAC	0.383000													12	58					0	0	0.000978	0	0
ELK3	2004	broad.mit.edu	37	12	96653537	96653537	+	Missense_Mutation	SNP	G	G	A			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr12:96653537G>A	ENST00000228741.3	+	4	1357	c.1031G>A	c.(1030-1032)aGt>aAt	p.S344N	ELK3_ENST00000552142.1_Missense_Mutation_p.S79N|ELK3_ENST00000549529.1_3'UTR	NM_005230.2	NP_005221.2	P41970	ELK3_HUMAN	ELK3, ETS-domain protein (SRF accessory protein 2)	344					negative regulation of transcription, DNA-dependent|signal transduction	mitochondrion	protein binding|purine-rich negative regulatory element binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			breast(2)|cervix(1)|endometrium(1)|kidney(1)|large_intestine(4)|liver(1)|lung(5)|ovary(2)|prostate(1)|stomach(2)	20	all_cancers(2;0.00173)					CTGACTCCGAGTCCACTGCTC	0.527000													38	74					0	0	0.004289	0	0
RAB11FIP1	80223	broad.mit.edu	37	8	37729629	37729629	+	Silent	SNP	G	G	A			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr8:37729629G>A	ENST00000330843.4	-	4	2703	c.2691C>T	c.(2689-2691)gtC>gtT	p.V897V	RAB11FIP1_ENST00000522727.1_Intron|RAB11FIP1_ENST00000524118.1_Intron|RAB11FIP1_ENST00000523182.1_5'UTR|RAB11FIP1_ENST00000287263.4_Intron	NM_001002814.2	NP_001002814.2	Q6WKZ4	RFIP1_HUMAN	RAB11 family interacting protein 1 (class I)	897					protein transport	centrosome|phagocytic vesicle membrane|recycling endosome	protein binding	p.V897V(1)		NS(1)|breast(1)|central_nervous_system(4)|endometrium(3)|large_intestine(6)|lung(20)|ovary(3)|prostate(1)|skin(3)|stomach(1)|upper_aerodigestive_tract(3)|urinary_tract(3)	49		Lung NSC(58;0.118)|all_lung(54;0.195)	LUSC - Lung squamous cell carcinoma(8;3.62e-11)			CACTCATGGGGACTTCGGAGA	0.597000													21	59					0	0	0.001523	0	0
CDH11	1009	broad.mit.edu	37	16	64984722	64984722	+	Silent	SNP	G	G	T			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr16:64984722G>T	ENST00000394156.3	-	12	2295	c.1842C>A	c.(1840-1842)ggC>ggA	p.G614G	CDH11_ENST00000566827.1_Silent_p.G488G|CDH11_ENST00000268603.4_Silent_p.G614G			P55287	CAD11_HUMAN	cadherin 11, type 2, OB-cadherin (osteoblast)	614					adherens junction organization|cell junction assembly|homophilic cell adhesion|ossification|skeletal system development	integral to membrane|plasma membrane	calcium ion binding|protein binding			NS(1)|breast(1)|central_nervous_system(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(5)|kidney(5)|large_intestine(19)|lung(40)|ovary(3)|prostate(3)|skin(2)|urinary_tract(2)	88		Ovarian(137;0.0973)		OV - Ovarian serous cystadenocarcinoma(108;0.205)		CTGTGCTCAGGCCGGCGTTCA	0.627000			T	USP6	aneurysmal bone cysts					TSP Lung(24;0.17)			18	53					1.56452e-12	1.09517e-11	0.007413	1	0
BSN	8927	broad.mit.edu	37	3	49690423	49690423	+	Missense_Mutation	SNP	G	G	A			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr3:49690423G>A	ENST00000296452.4	+	5	3548	c.3434G>A	c.(3433-3435)cGg>cAg	p.R1145Q		NM_003458.3	NP_003449.2	Q9UPA5	BSN_HUMAN	bassoon presynaptic cytomatrix protein	1145					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			breast(8)|central_nervous_system(2)|cervix(2)|endometrium(16)|kidney(3)|large_intestine(17)|lung(37)|ovary(7)|pancreas(1)|prostate(4)|skin(6)|upper_aerodigestive_tract(2)|urinary_tract(1)	106				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		GGCCCTAGCCGGCTTTACAAG	0.612000													13	66					0	0	0.001855	0	0
PPP6C	5537	broad.mit.edu	37	9	127912061	127912061	+	Missense_Mutation	SNP	G	G	A			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr9:127912061G>A	ENST00000451402.1	-	8	1140	c.920C>T	c.(919-921)tCg>tTg	p.S307L	PPP6C_ENST00000373547.4_Missense_Mutation_p.S270L|PPP6C_ENST00000373546.3_Missense_Mutation_p.S123L|PPP6C_ENST00000415905.1_Missense_Mutation_p.S248L	NM_001123355.1	NP_001116827.1	O00743	PPP6_HUMAN	protein phosphatase 6, catalytic subunit	270					G1/S transition of mitotic cell cycle|protein dephosphorylation	cytosol	metal ion binding|protein binding|protein serine/threonine phosphatase activity	p.S270L(1)		NS(2)|endometrium(1)|large_intestine(4)|liver(1)|lung(2)|ovary(1)|skin(3)	14						GACCATGATCGAAGCAATATT	0.408000													35	19					0	0	0.003755	0	0
ZNF609	23060	broad.mit.edu	37	15	64792343	64792343	+	Missense_Mutation	SNP	T	T	C			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr15:64792343T>C	ENST00000326648.3	+	1	853	c.725T>C	c.(724-726)cTa>cCa	p.L242P	ZNF609_ENST00000416172.1_Missense_Mutation_p.L242P	NM_015042.1	NP_055857.1	O15014	ZN609_HUMAN	zinc finger protein 609	242						nucleus	zinc ion binding			breast(3)|central_nervous_system(2)|endometrium(5)|kidney(1)|large_intestine(9)|lung(11)|ovary(1)|pancreas(1)|skin(4)|upper_aerodigestive_tract(1)|urinary_tract(1)	39						TGTCGCCTGCTAAAGAAAGTC	0.517000													11	31					0	0	0.008291	0	0
MOB2	81532	broad.mit.edu	37	11	1491656	1491656	+	Missense_Mutation	SNP	C	C	T			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr11:1491656C>T	ENST00000329957.6	-	5	742	c.553G>A	c.(553-555)Gtg>Atg	p.V185M	MOB2_ENST00000526462.1_5'UTR	NM_001172223.1	NP_001165694.1	Q70IA6	MOB2_HUMAN	MOB kinase activator 2	154						nucleus|perinuclear region of cytoplasm	metal ion binding			breast(1)|kidney(2)|lung(1)	4						TGTGCCAGCACGTGGAACAGG	0.582000													18	27					0	0	0.006122	0	0
C1QC	714	broad.mit.edu	37	1	22973839	22973839	+	Missense_Mutation	SNP	C	C	T			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr1:22973839C>T	ENST00000374639.3	+	3	419	c.301C>T	c.(301-303)Ccc>Tcc	p.P101S	C1QC_ENST00000374637.1_Missense_Mutation_p.P101S|C1QC_ENST00000374640.4_Missense_Mutation_p.P101S	NM_001114101.1	NP_001107573.1	P02747	C1QC_HUMAN	complement component 1, q subcomponent, C chain	101	Collagen-like.				complement activation, classical pathway|innate immune response|negative regulation of granulocyte differentiation|negative regulation of macrophage differentiation	collagen				endometrium(2)|kidney(1)|large_intestine(3)|lung(4)|prostate(1)|skin(3)|upper_aerodigestive_tract(1)	15		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;6.21e-27)|Colorectal(126;1.5e-07)|COAD - Colon adenocarcinoma(152;1.12e-05)|GBM - Glioblastoma multiforme(114;1.61e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000538)|KIRC - Kidney renal clear cell carcinoma(1967;0.00269)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.196)	Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	GGTGCCCGGCCCCATGGGCAT	0.642000													30	59					0	0	0.008361	0	0
PLXNA1	5361	broad.mit.edu	37	3	126707544	126707544	+	Silent	SNP	T	T	G			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr3:126707544T>G	ENST00000251772.4	+	1	108	c.39T>G	c.(37-39)ggT>ggG	p.G13G	PLXNA1_ENST00000393409.2_Silent_p.G36G			Q9UIW2	PLXA1_HUMAN	plexin A1	36					axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity	p.G13G(4)		breast(3)|central_nervous_system(5)|endometrium(10)|kidney(5)|large_intestine(4)|lung(32)|ovary(2)|pancreas(1)|prostate(2)|skin(3)	67				GBM - Glioblastoma multiforme(114;0.155)		CAGGCGGGGGTTCACAGCCCC	0.682000													11	35					0	0	0.002299	0	0
CR1	1378	broad.mit.edu	37	1	207758161	207758161	+	Missense_Mutation	SNP	C	C	T			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr1:207758161C>T	ENST00000367049.4	+	33	5470	c.5470C>T	c.(5470-5472)Cct>Tct	p.P1824S	CR1_ENST00000367052.1_Missense_Mutation_p.P1374S|RP11-78B10.2_ENST00000596003.1_RNA|CR1_ENST00000367053.1_Missense_Mutation_p.P1374S|RP11-78B10.2_ENST00000597497.1_RNA|CR1_ENST00000367051.1_Missense_Mutation_p.P1374S|CR1_ENST00000400960.2_Missense_Mutation_p.P1374S	NM_000651.4	NP_000642.3	P17927	CR1_HUMAN	complement component (3b/4b) receptor 1 (Knops blood group)	1374	Sushi 28.				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			NS(1)|breast(1)|central_nervous_system(1)|endometrium(9)|kidney(11)|large_intestine(13)|lung(33)|ovary(3)|prostate(6)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	82						CACAAGTGACCCTCATGGGAA	0.512000													7	217					0	0	0.001984	0	0
DNAH8	1769	broad.mit.edu	37	6	38830108	38830108	+	Missense_Mutation	SNP	G	G	A			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr6:38830108G>A	ENST00000359357.3	+	42	5787	c.5533G>A	c.(5533-5535)Gca>Aca	p.A1845T	DNAH8_ENST00000449981.2_Missense_Mutation_p.A2062T|DNAH8_ENST00000441566.1_Missense_Mutation_p.A1845T					dynein, axonemal, heavy chain 8											NS(7)|breast(9)|central_nervous_system(4)|cervix(1)|endometrium(12)|haematopoietic_and_lymphoid_tissue(3)|kidney(16)|large_intestine(44)|liver(4)|lung(101)|ovary(7)|pancreas(2)|prostate(8)|skin(28)|stomach(4)|upper_aerodigestive_tract(6)|urinary_tract(4)	260						AGGTGCTCCCGCAGGACCTGC	0.458000													38	79					0	0	0.004878	0	0
C20orf166-AS1	253868	broad.mit.edu	37	20	61143603	61143603	+	RNA	SNP	G	G	A			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr20:61143603G>A	ENST00000475015.1	-	0	735				C20orf166-AS1_ENST00000412495.1_RNA																							GGGGGCTAAGGGGCCACTTGG	0.652000													18	56					0	0	0.004990	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	A	T	rs121913377		TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr7:140453136A>T	ENST00000288602.6	-	15	1859	c.1799T>A	c.(1798-1800)gTg>gAg	p.V600E		NM_004333.4	NP_004324.2	P15056	BRAF_HUMAN	v-raf murine sarcoma viral oncogene homolog B	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(15453)|p.V600K(252)|p.V600R(44)|p.V600D(16)|p.V600A(12)|p.V600_K601>E(12)|p.V600G(11)|p.T599_R603>I(2)|p.V600Q(2)|p.V600_S605>EK(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insDFGLAT(1)	SLC45A3/BRAF(2)|AGTRAP/BRAF(2)|FAM131B_ENST00000443739/BRAF(7)|AKAP9_ENST00000356239/BRAF(10)|KIAA1549/BRAF(703)|FCHSD1/BRAF(2)	NS(588)|adrenal_gland(3)|autonomic_ganglia(3)|biliary_tract(29)|bone(7)|breast(21)|central_nervous_system(99)|cervix(6)|endometrium(33)|eye(72)|gastrointestinal_tract_(site_indeterminate)(2)|genital_tract(4)|haematopoietic_and_lymphoid_tissue(436)|kidney(3)|large_intestine(6953)|liver(17)|lung(192)|oesophagus(4)|ovary(275)|pancreas(15)|pituitary(1)|prostate(25)|salivary_gland(1)|skin(6285)|small_intestine(12)|soft_tissue(40)|stomach(11)|testis(7)|thyroid(12220)|upper_aerodigestive_tract(13)|urinary_tract(3)	27380	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600D(K029AX_SKIN)|V600D(WM115_SKIN)|V600D(WM2664_SKIN)|V600E(8505C_THYROID)|V600E(A101D_SKIN)|V600E(A2058_SKIN)|V600E(A375_SKIN)|V600E(A673_BONE)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(BCPAP_THYROID)|V600E(BHT101_THYROID)|V600E(BT474_BREAST)|V600E(C32_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(COLO205_LARGE_INTESTINE)|V600E(COLO679_SKIN)|V600E(COLO741_SKIN)|V600E(COLO783_SKIN)|V600E(COLO800_SKIN)|V600E(COLO818_SKIN)|V600E(COLO829_SKIN)|V600E(COLO849_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(DU4475_BREAST)|V600E(ES2_OVARY)|V600E(G361_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(HS294T_SKIN)|V600E(HS695T_SKIN)|V600E(HS939T_SKIN)|V600E(IGR1_SKIN)|V600E(IGR37_SKIN)|V600E(IGR39_SKIN)|V600E(K029AX_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(LOXIMVI_SKIN)|V600E(MALME3M_SKIN)|V600E(MELHO_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(RKO_LARGE_INTESTINE)|V600E(RPMI7951_SKIN)|V600E(RVH421_SKIN)|V600E(SH4_SKIN)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(SKHEP1_LIVER)|V600E(SKMEL24_SKIN)|V600E(SKMEL28_SKIN)|V600E(SKMEL5_SKIN)|V600E(SW1417_LARGE_INTESTINE)|V600E(UACC257_SKIN)|V600E(UACC62_SKIN)|V600E(WM793_SKIN)|V600E(WM88_SKIN)|V600E(WM983B_SKIN)	61	"""Mis, T, O"""	"""AKAP9, KIAA1549"""	"""melanoma, colorectal, papillary thyroid, borderline ov, Non small-cell lung cancer (NSCLC), cholangiocarcinoma, pilocytic astrocytoma"""		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous syndrome				27	65					0	0	0.006320	0	0
LCLAT1	253558	broad.mit.edu	37	2	30785013	30785013	+	Splice_Site	SNP	T	T	C			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr2:30785013T>C	ENST00000309052.4	+	5	689	c.478_splice	c.e5-1	p.G160_splice	LCLAT1_ENST00000540623.1_Splice_Site_p.G122_splice|LCLAT1_ENST00000379509.3_Splice_Site_p.G122_splice|LCLAT1_ENST00000359433.1_Splice_Site_p.G160_splice|LCLAT1_ENST00000319406.4_Splice_Site_p.G160_splice|LCLAT1_ENST00000491680.2_3'UTR	NM_182551.3	NP_872357.2	Q6UWP7	LCLT1_HUMAN	lysocardiolipin acyltransferase 1	160					multicellular organismal development|phospholipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	1-acylglycerol-3-phosphate O-acyltransferase activity			NS(1)|breast(1)|central_nervous_system(1)|endometrium(1)|kidney(4)|large_intestine(3)|lung(6)|ovary(2)	19						TGATTCTAGGTTGGGCCATGC	0.313000													9	28					0	0	0.006214	0	0
WASH3P	374666	broad.mit.edu	37	15	102515299	102515299	+	RNA	SNP	G	G	A			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr15:102515299G>A	ENST00000557932.1	+	0	1145																		p.G374S(10)		central_nervous_system(1)|endometrium(6)|kidney(11)|prostate(5)|stomach(1)|urinary_tract(1)	25						TGGGGGCATCGGCAAGGCCAA	0.652000													7	11					0	0	0.004482	0	0
TMEM74	157753	broad.mit.edu	37	8	109796547	109796547	+	Missense_Mutation	SNP	G	G	A			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr8:109796547G>A	ENST00000297459.3	-	2	959	c.781C>T	c.(781-783)Cgt>Tgt	p.R261C	TMEM74_ENST00000518838.1_Intron	NM_153015.1	NP_694560.1	Q96NL1	TMM74_HUMAN	transmembrane protein 74	261					autophagy	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane|lysosomal membrane				breast(1)|endometrium(2)|kidney(1)|large_intestine(6)|lung(12)|ovary(1)|prostate(3)|skin(2)|urinary_tract(1)	29			OV - Ovarian serous cystadenocarcinoma(57;3.08e-10)			CTGTTTCGACGATAGAGCTCC	0.512000													17	51					0	0	0.004990	0	0
FGR	2268	broad.mit.edu	37	1	27939461	27939461	+	Silent	SNP	G	G	A			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr1:27939461G>A	ENST00000374005.3	-	13	1842	c.1554C>T	c.(1552-1554)tcC>tcT	p.S518S	FGR_ENST00000374004.1_Silent_p.S518S|FGR_ENST00000545953.1_Silent_p.S452S|FGR_ENST00000399173.1_Silent_p.S518S	NM_005248.2	NP_005239.1	P09769	FGR_HUMAN	feline Gardner-Rasheed sarcoma viral oncogene homolog	518					platelet activation|response to virus	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity			breast(1)|endometrium(2)|kidney(1)|large_intestine(3)|lung(4)|prostate(1)|skin(4)	16		all_lung(284;2.05e-05)|Colorectal(325;3.46e-05)|Lung NSC(340;3.67e-05)|Renal(390;0.00121)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.25e-24)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00244)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		GTGGTTCAGCGGAGGTGAAGT	0.612000													21	35					0	0	0.001882	0	0
UGT1A8	54576	broad.mit.edu	37	2	234526363	234526363	+	Missense_Mutation	SNP	A	A	G	rs150485330		TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr2:234526363A>G	ENST00000373450.4	+	1	73	c.10A>G	c.(10-12)Aca>Gca	p.T4A		NM_019076.4	NP_061949.3												p.T4A(3)		breast(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(5)|lung(12)|ovary(2)|prostate(1)|skin(3)	30		Breast(86;0.000766)|all_lung(227;0.00271)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0334)|Lung NSC(271;0.0461)|Lung SC(224;0.128)		Epithelial(121;2.56e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000482)|Lung(119;0.00404)|LUSC - Lung squamous cell carcinoma(224;0.008)		CATGGCTCGCACAGGGTGGAC	0.562000													4	51					0	0	0.000248	0	0
TNS1	7145	broad.mit.edu	37	2	218757693	218757693	+	Missense_Mutation	SNP	G	G	A			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr2:218757693G>A	ENST00000171887.4	-	9	837	c.385C>T	c.(385-387)Cac>Tac	p.H129Y	TNS1_ENST00000430930.1_Missense_Mutation_p.H129Y|TNS1_ENST00000419504.1_Missense_Mutation_p.H129Y|TNS1_ENST00000310858.6_Missense_Mutation_p.H160Y	NM_022648.4	NP_072174.3	Q9HBL0	TENS1_HUMAN	tensin 1	129	Phosphatase tensin-type.					cytoplasm|cytoskeleton|focal adhesion	actin binding			breast(2)|cervix(1)|endometrium(6)|kidney(3)|large_intestine(23)|liver(1)|lung(24)|ovary(3)|pancreas(1)|prostate(3)|skin(5)|stomach(3)|upper_aerodigestive_tract(3)|urinary_tract(1)	79		Renal(207;0.0483)|Lung NSC(271;0.213)		Epithelial(149;4.43e-06)|all cancers(144;0.000653)|LUSC - Lung squamous cell carcinoma(224;0.0091)|Lung(261;0.013)		TTGCTGTAGTGCATGTAAGCC	0.542000													25	82					0	0	0.005443	0	0
DDX20	11218	broad.mit.edu	37	1	112308358	112308358	+	Splice_Site	SNP	G	G	A			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr1:112308358G>A	ENST00000475700.1	+	3	2494		c.e3-1		DDX20_ENST00000536167.1_Splice_Site|DDX20_ENST00000369702.4_Splice_Site			Q9UHI6	DDX20_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20						assembly of spliceosomal tri-snRNP|ncRNA metabolic process	Cajal body|cytoskeleton|cytosol|spliceosomal complex	ATP binding|ATP-dependent RNA helicase activity|DNA binding|protein binding	p.?(1)		endometrium(3)|kidney(7)|large_intestine(6)|lung(3)|pancreas(1)|prostate(1)	21		all_cancers(81;1.06e-05)|all_epithelial(167;7.36e-06)|all_lung(203;2.44e-05)|Lung NSC(69;4.15e-05)		Lung(183;0.0234)|Colorectal(144;0.0282)|all cancers(265;0.0614)|Epithelial(280;0.0999)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TTTTTATGTAGATCCCATTCC	0.348000													61	107					0	0	0.003610	0	0
AHNAK	79026	broad.mit.edu	37	11	62290254	62290254	+	Missense_Mutation	SNP	C	C	G			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr11:62290254C>G	ENST00000378024.4	-	5	11909	c.11635G>C	c.(11635-11637)Gat>Cat	p.D3879H	AHNAK_ENST00000257247.7_Intron|AHNAK_ENST00000530124.1_Intron	NM_001620.1	NP_001611.1	Q09666	AHNK_HUMAN	AHNAK nucleoprotein	3879					nervous system development	nucleus	protein binding			NS(3)|autonomic_ganglia(1)|breast(10)|central_nervous_system(5)|endometrium(17)|haematopoietic_and_lymphoid_tissue(2)|kidney(33)|large_intestine(40)|liver(1)|lung(108)|ovary(13)|pancreas(4)|prostate(5)|skin(16)|stomach(2)|upper_aerodigestive_tract(2)|urinary_tract(6)	268		Melanoma(852;0.155)				AGGTTAAGATCAATGTCAGGC	0.458000													12	288					0	0	0.001368	0	0
DFNB31	25861	broad.mit.edu	37	9	117266602	117266602	+	Silent	SNP	C	C	T			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr9:117266602C>T	ENST00000362057.3	-	1	648	c.480G>A	c.(478-480)tcG>tcA	p.S160S	DFNB31_ENST00000374057.3_Silent_p.S160S|DFNB31_ENST00000480518.1_5'UTR	NM_001173425.1|NM_015404.3	NP_001166896.1|NP_056219.3	Q9P202	WHRN_HUMAN	deafness, autosomal recessive 31	160	PDZ 1.				inner ear receptor stereocilium organization|retina homeostasis|sensory perception of light stimulus|sensory perception of sound	cytoplasm|growth cone|stereocilium				central_nervous_system(2)|endometrium(3)|kidney(1)|large_intestine(9)|liver(1)|lung(14)|ovary(5)|pancreas(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	38						CGCCGTGCTCCGAGCCCCCAC	0.682000													38	56					0	0	0.006230	0	0
SPPL2A	84888	broad.mit.edu	37	15	51012138	51012138	+	Splice_Site	SNP	T	T	A			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr15:51012138T>A	ENST00000261854.5	-	14	1761	c.1488_splice	c.e14+1	p.Q496_splice		NM_032802.3	NP_116191.2	Q8TCT8	PSL2_HUMAN	signal peptide peptidase like 2A	496						integral to membrane	aspartic-type endopeptidase activity			endometrium(1)|kidney(1)|large_intestine(4)|lung(6)|prostate(1)|stomach(1)|upper_aerodigestive_tract(1)	15				all cancers(107;0.000712)|GBM - Glioblastoma multiforme(94;0.00314)		AGCACATACCTGATAGCTGTT	0.398000													14	48					0	0	0.001855	0	0
AMZ2P1	201283	broad.mit.edu	37	17	62968690	62968690	+	RNA	SNP	A	A	G	rs138671696	by1000genomes	TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr17:62968690A>G	ENST00000430983.1	-	0	1554					NR_026903.1																						AAAATTCCACAAGTCTCTTGG	0.373000													5	119					0	0	0.000602	0	0
FAM217A	222826	broad.mit.edu	37	6	4069856	4069856	+	Missense_Mutation	SNP	C	C	T			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr6:4069856C>T	ENST00000274673.3	-	7	1004	c.601G>A	c.(601-603)Gat>Aat	p.D201N	FAM217A_ENST00000380188.2_5'UTR	NM_173563.2	NP_775834.2	Q8IXS0	CF146_HUMAN	family with sequence similarity 217, member A	201																	TCACTTTCATCTGTGAAATTT	0.323000													34	103					0	0	0.002445	0	0
MYO15A	51168	broad.mit.edu	37	17	18023082	18023082	+	Missense_Mutation	SNP	C	C	T			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr17:18023082C>T	ENST00000205890.5	+	2	1306	c.968C>T	c.(967-969)tCg>tTg	p.S323L		NM_016239.3	NP_057323.3	Q9UKN7	MYO15_HUMAN	myosin XVA	323	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			breast(5)|central_nervous_system(2)|endometrium(17)|kidney(3)|large_intestine(16)|lung(27)|ovary(3)|pancreas(1)|prostate(6)|skin(13)|stomach(1)|upper_aerodigestive_tract(3)|urinary_tract(2)	99	all_neural(463;0.228)					TCGGGGTACTCGTCTCCTTAC	0.607000													21	68					0	0	0.001882	0	0
HMCN1	83872	broad.mit.edu	37	1	185704142	185704142	+	Silent	SNP	T	T	A			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr1:185704142T>A	ENST00000271588.4	+	1	460	c.231T>A	c.(229-231)ccT>ccA	p.P77P	HMCN1_ENST00000367492.2_Silent_p.P77P	NM_031935.2	NP_114141.2	Q96RW7	HMCN1_HUMAN	hemicentin 1	77	VWFA.				response to stimulus|visual perception	basement membrane	calcium ion binding			NS(2)|autonomic_ganglia(1)|breast(10)|central_nervous_system(2)|cervix(1)|endometrium(28)|haematopoietic_and_lymphoid_tissue(4)|kidney(13)|large_intestine(58)|liver(3)|lung(101)|ovary(23)|pancreas(4)|prostate(20)|skin(8)|stomach(1)|upper_aerodigestive_tract(11)|urinary_tract(18)	308						CTAAAAGACCTCTTTTCAACT	0.368000													34	81					0	0	0.004878	0	0
UNC45A	55898	broad.mit.edu	37	15	91496480	91496480	+	Silent	SNP	C	C	T			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr15:91496480C>T	ENST00000394275.2	+	22	3307	c.2472C>T	c.(2470-2472)gcC>gcT	p.A824A	AC068831.6_ENST00000553321.1_RNA|UNC45A_ENST00000418476.2_Silent_p.A839A	NM_001039675.1	NP_001034764.1	Q9H3U1	UN45A_HUMAN	unc-45 homolog A (C. elegans)	839					cell differentiation|muscle organ development	nucleus|perinuclear region of cytoplasm	protein binding			breast(1)|endometrium(4)|kidney(1)|large_intestine(5)|lung(7)|ovary(3)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	25	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.189)			GGGCAGCTGCCGGGGGCTTGG	0.632000													35	314					0	0	0.003755	0	0
SORBS2	8470	broad.mit.edu	37	4	186545335	186545335	+	Silent	SNP	C	C	T			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr4:186545335C>T	ENST00000431808.1	-	14	1799	c.1236G>A	c.(1234-1236)gaG>gaA	p.E412E	SORBS2_ENST00000498125.1_Intron|SORBS2_ENST00000418609.1_Silent_p.E316E|SORBS2_ENST00000319471.9_Intron|SORBS2_ENST00000284776.7_Silent_p.E412E|SORBS2_ENST00000449407.2_Intron|SORBS2_ENST00000448662.2_Intron|SORBS2_ENST00000393528.3_Intron|SORBS2_ENST00000355634.5_Silent_p.E512E|SORBS2_ENST00000437304.2_Intron			O94875	SRBS2_HUMAN	sorbin and SH3 domain containing 2	412						actin cytoskeleton|nucleus|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			endometrium(7)|haematopoietic_and_lymphoid_tissue(3)|kidney(4)|large_intestine(9)|lung(21)|ovary(2)|prostate(2)|skin(4)|urinary_tract(1)	53		all_cancers(14;4.27e-52)|all_epithelial(14;6.58e-39)|all_lung(41;1.42e-13)|Lung NSC(41;3.73e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00692)|Hepatocellular(41;0.00826)|Renal(120;0.00994)|Prostate(90;0.0101)|all_hematologic(60;0.0174)|all_neural(102;0.244)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-09)|BRCA - Breast invasive adenocarcinoma(30;0.000232)|GBM - Glioblastoma multiforme(59;0.000385)|STAD - Stomach adenocarcinoma(60;0.00109)|LUSC - Lung squamous cell carcinoma(40;0.0205)		CCTTGGAGTCCTCCTCACATA	0.592000													17	67					0	0	0.004007	0	0
TLK2	11011	broad.mit.edu	37	17	60600509	60600509	+	Silent	SNP	A	A	C			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr17:60600509A>C	ENST00000326270.9	+	5	506	c.238A>C	c.(238-240)Agg>Cgg	p.R80R	TLK2_ENST00000542523.1_Silent_p.R80R|TLK2_ENST00000346027.5_Silent_p.R80R|TLK2_ENST00000343388.7_Silent_p.R80R|TLK2_ENST00000582809.1_5'UTR			Q86UE8	TLK2_HUMAN	tousled-like kinase 2	80					cell cycle|chromatin modification|intracellular signal transduction|regulation of chromatin assembly or disassembly|response to DNA damage stimulus	nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			NS(1)|breast(2)|central_nervous_system(1)|endometrium(10)|kidney(4)|large_intestine(6)|liver(2)|lung(10)|prostate(1)|stomach(1)|urinary_tract(1)	39						AGGCACTCCTAGGGGACATAA	0.269000													4	13					0	0	0.004482	0	0
RRN3P2	653390	broad.mit.edu	37	16	29110458	29110458	+	RNA	SNP	T	T	C	rs151074589	by1000genomes	TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr16:29110458T>C	ENST00000564580.1	+	0	1131																		p.W375R(25)									GAATTTTGAGTGGATAGTGAT	0.328000													6	70					0	0	0.004482	0	0
HSPBP1	23640	broad.mit.edu	37	19	55785939	55785939	+	Missense_Mutation	SNP	G	G	A			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr19:55785939G>A	ENST00000255631.5	-	5	777	c.467C>T	c.(466-468)gCg>gTg	p.A156V	HSPBP1_ENST00000433386.2_Missense_Mutation_p.A156V|HSPBP1_ENST00000587922.1_Missense_Mutation_p.A156V|HSPBP1_ENST00000376343.3_Missense_Mutation_p.A156V	NM_001130106.1|NM_012267.4	NP_001123578.1|NP_036399.3	Q9NZL4	HPBP1_HUMAN	HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1	159					positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein folding		enzyme inhibitor activity|protein binding			endometrium(1)|kidney(1)|large_intestine(2)|lung(2)|prostate(1)|urinary_tract(1)	8			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0452)		CGCAGCCCCCGCCTCCAGGTA	0.672000													13	19					0	0	0.003163	0	0
SAMSN1	64092	broad.mit.edu	37	21	15884826	15884826	+	Silent	SNP	C	C	T			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr21:15884826C>T	ENST00000285670.2	-	5	726	c.552G>A	c.(550-552)gaG>gaA	p.E184E	SAMSN1_ENST00000400564.1_Intron|SAMSN1_ENST00000400566.1_Silent_p.E116E	NM_001256370.1	NP_001243299.1	Q9NSI8	SAMN1_HUMAN	SAM domain, SH3 domain and nuclear localization signals 1	116	SH3.				negative regulation of adaptive immune response|negative regulation of B cell activation|negative regulation of peptidyl-tyrosine phosphorylation	cytoplasm|nucleus|ruffle	phosphotyrosine binding			breast(2)|endometrium(1)|kidney(1)|large_intestine(3)|lung(9)|ovary(3)|pancreas(1)|prostate(3)|urinary_tract(1)	24				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.00118)|Colorectal(24;0.00961)|Lung(58;0.164)		GGGACACCTTCTCTGTGTGGG	0.478000													61	144					0	0	0.003610	0	0
EDN3	1908	broad.mit.edu	37	20	57896118	57896118	+	Missense_Mutation	SNP	G	G	A			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr20:57896118G>A	ENST00000311585.7	+	3	782	c.412G>A	c.(412-414)Ggc>Agc	p.G138S	EDN3_ENST00000337938.2_Missense_Mutation_p.G138S|EDN3_ENST00000371025.3_Missense_Mutation_p.G138S|EDN3_ENST00000371028.2_Missense_Mutation_p.G138S|EDN3_ENST00000395654.3_Missense_Mutation_p.G138S	NM_207032.1	NP_996915.1	P14138	EDN3_HUMAN	endothelin 3	138					cell surface receptor linked signaling pathway|inositol phosphate-mediated signaling|neutrophil chemotaxis|peptide hormone secretion|positive regulation of heart rate|positive regulation of hormone secretion|positive regulation of leukocyte chemotaxis|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of systemic arterial blood pressure by endothelin|regulation of vasoconstriction|vein smooth muscle contraction	extracellular space|soluble fraction	endothelin B receptor binding|hormone activity			endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(2)|liver(1)|lung(9)|skin(2)|upper_aerodigestive_tract(2)	19	all_lung(29;0.0115)					AAGCTTCCGGGGCAAGAGGTC	0.597000													32	77					0	0	0.003271	0	0
FLT3	2322	broad.mit.edu	37	13	28601295	28601295	+	Missense_Mutation	SNP	T	T	C			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr13:28601295T>C	ENST00000380982.4	-	17	2218	c.2137A>G	c.(2137-2139)Act>Gct	p.T713A	FLT3_ENST00000241453.7_Missense_Mutation_p.T713A|FLT3_ENST00000537084.1_Missense_Mutation_p.T713A			P36888	FLT3_HUMAN	fms-related tyrosine kinase 3	713	Protein kinase.				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity			NS(1)|breast(3)|central_nervous_system(2)|endometrium(1)|haematopoietic_and_lymphoid_tissue(12329)|kidney(2)|large_intestine(8)|lung(30)|ovary(4)|prostate(1)|skin(5)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	12390	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	TCTGTCCAAGTCCTGTGAAAT	0.358000			"""Mis, O"""		"""AML, ALL"""								20	109					0	0	0.001523	0	0
DDX60	55601	broad.mit.edu	37	4	169176878	169176878	+	Missense_Mutation	SNP	C	C	T			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr4:169176878C>T	ENST00000393743.3	-	26	3832	c.3541G>A	c.(3541-3543)Gag>Aag	p.E1181K	DDX60_ENST00000505393.1_5'UTR	NM_017631.5	NP_060101.3	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	1181							ATP binding|ATP-dependent helicase activity|RNA binding			breast(1)|central_nervous_system(3)|endometrium(6)|haematopoietic_and_lymphoid_tissue(2)|kidney(2)|large_intestine(15)|liver(1)|lung(21)|ovary(1)|pancreas(2)|prostate(1)|skin(4)|urinary_tract(4)	63		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		TTTTGTTTCTCTATGGATTTT	0.348000													11	49					0	0	0.001368	0	0
FMN2	56776	broad.mit.edu	37	1	240255569	240255571	+	In_Frame_Del	DEL	GGC	GGC	-	rs71929261		TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr1:240255569_240255571delGGC	ENST00000319653.9	+	1	390_392	c.160_162delGGC	c.(160-162)del	p.G59del		NM_020066.4	NP_064450.3	Q9NZ56	FMN2_HUMAN	formin 2	59					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding	p.G197delG(1)		NS(1)|breast(7)|central_nervous_system(6)|cervix(1)|endometrium(14)|haematopoietic_and_lymphoid_tissue(1)|kidney(10)|large_intestine(13)|lung(87)|ovary(6)|pancreas(3)|prostate(12)|skin(7)|stomach(2)|upper_aerodigestive_tract(6)|urinary_tract(2)	178	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			GGGGGGAgggggcggcggcggcg	0.665													11	16	---	---	---	---					
THNSL2	55258	broad.mit.edu	37	2	88474921	88474922	+	Splice_Site	DEL	GT	GT	-			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr2:88474921_88474922delGT	ENST00000324166.5	+	3	2262		c.e3+1		THNSL2_ENST00000402102.1_Splice_Site|THNSL2_ENST00000358591.2_Splice_Site|THNSL2_ENST00000343544.4_Splice_Site|THNSL2_ENST00000377254.3_Splice_Site|THNSL2_ENST00000449349.1_Splice_Site|THNSL2_ENST00000496844.1_Splice_Site	NM_018271.4	NP_060741.3	Q86YJ6	THNS2_HUMAN	threonine synthase-like 2 (S. cerevisiae)						threonine biosynthetic process		threonine synthase activity	p.?(1)		breast(4)|lung(17)|ovary(1)|prostate(3)|upper_aerodigestive_tract(2)	27						GTGTTTGGAGGTGTGTGCTGAG	0.505													16	42	---	---	---	---					
GRIP2	80852	broad.mit.edu	37	3	14555758	14555759	+	RNA	INS	-	-	AGTT	rs10656368	by1000genomes	TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr3:14555758_14555759insAGTT	ENST00000273083.3	-	0	1558							Q9C0E4	GRIP2_HUMAN	glutamate receptor interacting protein 2						synaptic transmission	cytosol|plasma membrane	protein binding			endometrium(5)|large_intestine(4)|lung(8)|ovary(1)|pancreas(1)|prostate(5)|skin(1)	25						CAGTTTCTCTCAGAGAGTGGCA	0.579													4	7	---	---	---	---					
PRRC2A	7916	broad.mit.edu	37	6	31597456	31597457	+	Frame_Shift_Ins	INS	-	-	C			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr6:31597456_31597457insC	ENST00000376033.2	+	14	2322_2323	c.2088_2089insC	c.(2086-2091)ccccccfs	p.PP696fs	PRRC2A_ENST00000376007.4_Frame_Shift_Ins_p.PP696fs	NM_004638.3	NP_004629.3	P48634	PRC2A_HUMAN	proline-rich coiled-coil 2A	696	4 X 57 AA type A repeats.|Poly-Pro.					cytoplasm|nucleus	protein binding			breast(6)|central_nervous_system(1)|endometrium(7)|kidney(5)|large_intestine(14)|lung(19)|ovary(3)|pancreas(2)|prostate(4)|skin(5)|soft_tissue(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	70						CACAGGCTCCACCCCCGCCCCC	0.649													8	60	---	---	---	---					
CCT6P1	643253	broad.mit.edu	37	7	65226569	65226569	+	RNA	DEL	T	T	-			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr7:65226569delT	ENST00000442266.1	+	0	1167																											gcccggccCCttttttttttt	0.413													3	4	---	---	---	---					
PRSS3P2	154754	broad.mit.edu	37	7	142482025	142482025	+	RNA	DEL	A	A	-			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr7:142482025delA	ENST00000603901.1	+	0	591					NR_001296.3																						TGCAGTGCCCACATGGAGAAG	0.572													2	4	---	---	---	---					
PRDM12	59335	broad.mit.edu	37	9	133543701	133543702	+	Splice_Site	DEL	GT	GT	-			TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr9:133543701_133543702delGT	ENST00000253008.2	+	3	630		c.e3+1			NM_021619.2	NP_067632.2	Q9H4Q4	PRD12_HUMAN	PR domain containing 12						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			kidney(2)|large_intestine(3)|lung(4)|ovary(1)|upper_aerodigestive_tract(1)	11		all_hematologic(13;0.0433)|Acute lymphoblastic leukemia(5;0.0534)		OV - Ovarian serous cystadenocarcinoma(145;0.000344)		GGCCATTGAGGTGTGTGTGTGT	0.594													9	80	---	---	---	---					
MESP2	145873	broad.mit.edu	37	15	90320121	90320144	+	In_Frame_Del	DEL	AGGGGCAGGGGCAAGGGCAGGGGC	AGGGGCAGGGGCAAGGGCAGGGGC	-	rs56192595		TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr15:90320121_90320144delAGGGGCAGGGGCAAGGGCAGGGGC	ENST00000341735.3	+	1	533_556	c.533_556delAGGGGCAGGGGCAAGGGCAGGGGC	c.(532-558)gag>g	p.EGQGQGQGQ178del	MESP2_ENST00000558723.1_Intron|MESP2_ENST00000560219.1_Intron	NM_001039958.1	NP_001035047.1	Q0VG99	MESP2_HUMAN	mesoderm posterior 2 homolog (mouse)	178					Notch signaling pathway	nucleus	DNA binding	p.Q198_G205delQGQGQGQG(1)		kidney(1)|large_intestine(2)|lung(1)|skin(1)|upper_aerodigestive_tract(1)	6	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)			ACGCaggcggaggggcaggggcaagggcaggggcaggggcaggg	0.777													5	9	---	---	---	---					
AC008984.2	0	broad.mit.edu	37	19	54843564	54843565	+	RNA	INS	-	-	C	rs144647366	by1000genomes	TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr19:54843564_54843565insC	ENST00000507363.1	-	0	430																											CGGCTGCTCCTCCCCAGGCTGC	0.723													3	4	---	---	---	---					
KRTAP10-6	386674	broad.mit.edu	37	21	46012219	46012220	+	In_Frame_Ins	INS	-	-	GGGGCGCAGCAGCTG	rs71199613		TCGA-FS-A1ZH-06A-11D-A197-08	TCGA-FS-A1ZH-10A-01D-A199-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0120a766-01a8-46e2-bd76-7f7a2486cfaa	637507dc-91c1-4850-b3a0-35a1fb1134cd	g.chr21:46012219_46012220insGGGGCGCAGCAGCTG	ENST00000400368.1	-	1	166_167	c.146_147insCAGCTGCTGCGCCCC	c.(145-147)cgc>cCAGCTGCTGCGCCCCgc	p.48_49insPAAAP	TSPEAR_ENST00000323084.4_Intron	NM_198688.2	NP_941961.2	P60371	KR106_HUMAN	keratin associated protein 10-6	48	29 X 5 AA repeats of C-C-X(3).					keratin filament				endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(3)|lung(6)|prostate(3)|skin(1)|stomach(1)|urinary_tract(1)	23						GGCAGGGGGCCGGGGCGCAGCA	0.688													8	40	---	---	---	---					
